Genome: /home/shared/8TB_HDD_01/sam/gitrepos/deep-dive/F-Pmea/data/Pocillopora_meandrina_HIv1.assembly.fa
Alignments: /home/shared/8TB_HDD_01/sam/gitrepos/deep-dive/F-Pmea/output/13.1-Pmea-sRNAseq-ShortStack-R1-reads/ShortStack_out/merged_alignments.bam
Location: Pocillopora_meandrina_HIv1___Sc0000008:1783802-1783891 plus
Post-script file name: /home/shared/8TB_HDD_01/sam/gitrepos/deep-dive/F-Pmea/output/13.1-Pmea-sRNAseq-ShortStack-R1-reads/ShortStack_out/strucVis/Cluster_3043.ps
Locus Name: Cluster_3043
CCACCAUGUGAUCACCUGUGUUUAUGUUUUGGCUUGUUCCCAAUUUUUUGAGAGUAAGCCAACUCAUAAACAUCGACCGGUCAAUGCUCA
....(((.(((((....(((((((((..(((((((((((.(((....))).)))))))))))..))))))))).....)))))))).... (-29.50)
..ACCAUGUGAUCACCUGUa...................................................................... len:18 al:1
...CCAUGUGAUCACCUGUGUU.................................................................... len:19 al:2
...CCAUGUGAUCACCUGUGUa.................................................................... len:19 al:2
...CCAUGUGAUCACCUGUGgU.................................................................... len:19 al:2
...aCAUGUGAUCACCUGUGUU.................................................................... len:19 al:1
....CAUGUGAUCACCUGUGUU.................................................................... len:18 al:4
....CAUGcGAUCACCUGUGUU.................................................................... len:18 al:1
.....AUGUGAUCACCUGUGUU.................................................................... len:17 al:9
.....AUGUGAUCACCUGUGU..................................................................... len:16 al:1
......UGUGAUCACCUGUGcU.................................................................... len:16 al:1
......UGUGAUCACCUGUGUU.................................................................... len:16 al:1
.....................UUAUGUUUUGGCUUGa..................................................... len:16 al:1
.....................UUAUGUUUUGGCUUGUcC................................................... len:18 al:1
.....................UUAUGUUUUGGCUUGU..................................................... len:16 al:14
.....................UUAUGUUUUGGCUUGUUC................................................... len:18 al:39
.....................UUAUGUUUUGGCUUGUUu................................................... len:18 al:13
.....................UUAUGUUUUGGCUUGUUuCC................................................. len:20 al:1
.....................UUAUGUUUUGGCUUGUUCuCA................................................ len:21 al:4
.....................UUAUGUUUUGGCUUGUUuCCA................................................ len:21 al:6
.....................UUAcGUUUUGGCUUGUU.................................................... len:17 al:1
.....................UUAUGUUUUGGCUUGUUCC.................................................. len:19 al:1
.....................UUAUGUUUUGGCUUGUU.................................................... len:17 al:15
.....................UUAUGUUUUGGCUUG...................................................... len:15 al:2
.....................UaAUGUUUUGGCUUGUU.................................................... len:17 al:1
.....................UUAUGUUUUGGCUUGUc.................................................... len:17 al:4
.....................cUAUGUUUUGGCUUGUUCCC................................................. len:20 al:1
.....................UUAUGUUUUGGCUUGaU.................................................... len:17 al:1
.....................UUAUGUUUUGGCUUGUUuC.................................................. len:19 al:20
.....................cUAUGUUUUGGCUUGUU.................................................... len:17 al:1
.....................UUAUGUUUUGGCUUGUUCaC................................................. len:20 al:1
.....................UUAUGUUUUGGCUUGgU.................................................... len:17 al:1
......................UAUGUUUUGGCUUGUUCCCAu............................................... len:21 al:5
......................UAUGUUUUGGCUUGUUCCCAg............................................... len:21 al:3
......................UAUGUUUUGGCUUGUUCCg................................................. len:19 al:8
......................UAUGUcUUGGCUUGUUCCCA................................................ len:20 al:2
......................UAUGUUUUGGCUUGUUCCCAAUUUUUUGAGA..................................... len:31 al:4
......................UAUGUUUUGGCUUGUUCCCAc............................................... len:21 al:3
......................UAUGUUUUGGCUUGUU.................................................... len:16 al:8
......................UAUGUUUUGGCUUGUUCCCgA............................................... len:21 al:2
......................UAUGUUUUGGCUUGUUuCCA................................................ len:20 al:1
......................UAUGUUUUGGCUUGUUCCCgAU.............................................. len:22 al:2
......................UAUGUUUUGGCUUaU..................................................... len:15 al:1
......................UAUGUUUUGGCUUGUUCCa................................................. len:19 al:84
......................UAUGUUUUGGCUUGUUCCCAAU.............................................. len:22 al:6
......................UAUGUUUUGGCUUGUUCCCAAUUUUUUG........................................ len:28 al:1
......................UAUGUUUUGGCUUGUUuCC................................................. len:19 al:1
......................UAUGUUUUGGCUUGUcCCCAA............................................... len:21 al:1
......................cAUGUUUUGGCUUGUUCCCA................................................ len:20 al:4
......................UAUGUUUUGGCUUGUUCCCcA............................................... len:21 al:1
......................UAUGUUcUGGCUUGUUCCCA................................................ len:20 al:1
......................UAUGUUUUGGCUUGUUCCCc................................................ len:20 al:6
......................UAUGUUUUGGCUUGUUCa.................................................. len:18 al:11
......................UAUGgUUUGGCUUGUUCCCA................................................ len:20 al:1
......................UAUGUUUUGGCUUGUUC................................................... len:17 al:14
......................UAUGUUUUGGCUUGUUCCCAgU.............................................. len:22 al:1
......................UAUGUUUUGGCUcGUUCCCAA............................................... len:21 al:2
......................UAUGUUUUGGCUUGUUCuCAA............................................... len:21 al:1
......................UAUGUUUUGGCUUGUc.................................................... len:16 al:1
......................UAUGUUUUGGCUUGUUCCuA................................................ len:20 al:1
......................UAUGUUUUGGCUcGUUCCCA................................................ len:20 al:2
......................UAUGUUUUGGCcUGUUCCCA................................................ len:20 al:2
......................UAUGUUUUGGCUUGUUCCCAuU.............................................. len:22 al:1
......................UAUGUUUUGGCUUGU..................................................... len:15 al:4
......................UAUGUUUUGGCUUGUUCC.................................................. len:18 al:33
......................UAUGUUgUGGCUUGUUCCCA................................................ len:20 al:1
......................cAUGUUUUGGCUUGUUCCCAA............................................... len:21 al:1
......................aAUGUUUUGGCUUGUUCCCAA............................................... len:21 al:1
......................aAUGUUUUGGCUUGUUCCCA................................................ len:20 al:3
......................UAcGUUUUGGCUUGUUCCC................................................. len:19 al:2
......................UAUGUUUUGGCUUGUUCCCg................................................ len:20 al:27
......................UAUGUUUUGGCUUGcUCCC................................................. len:19 al:3
......................UAUGUUUUGGCUUGUUCuC................................................. len:19 al:1
......................UAUGUUUcGGCUUGUUCCCAA............................................... len:21 al:1
......................cAUGUUUUGGCUUGUUCCC................................................. len:19 al:1
......................UAUGUUUUGGCUUGUUCCu................................................. len:19 al:56
......................UAUGUUUUGGCUUaUUCCCAA............................................... len:21 al:1
......................UAUGUUUUGGCUUGUUCCC................................................. len:19 al:211
......................UAUGUUUUGGCUUGUUCCCAA............................................... len:21 al:68
......................UAUGUUUUGGCUUGUUCCCA................................................ len:20 al:332
......................UAUGUUUUGGCUUGUUCCCu................................................ len:20 al:5
.......................AUGUUUcGGCUUGUUCCCAAUU............................................. len:22 al:1
.......................AUGUUUUGGCUUGUUCCC................................................. len:18 al:2
........................UGUUUUGGCUUGUUCCCAAUUUUUUGAu...................................... len:28 al:1
........................UGUUUUGGCUUGUUCCCAuU.............................................. len:20 al:1
........................................CAAUUUUUUGAGAGUAAGCCAAuUCA........................ len:26 al:1
........................................CAAUUUUUUGAGAGUAAGCCAAuUCAUAAA.................... len:30 al:1
................................................UGAGAGUAAGCCAAuUCAUAAA.................... len:22 al:1
.................................................GAGAGUAAGCCAAuUCAUAAA.................... len:21 al:1
.................................................GAGAGUAAGCCAAuUCAUAAAC................... len:22 al:1
.................................................GAGAGUAAGCCAAuUCAUA...................... len:19 al:1
..................................................AGAGUAAGCCAAuUCAUAAA.................... len:20 al:1
..................................................AGAGUAAGCCAAuUCAU....................... len:17 al:1
......................................................................CAUCGgCCGGUCAAUGCU.. len:18 al:2