Genome: /home/shared/8TB_HDD_01/sam/gitrepos/deep-dive/F-Pmea/data/Pocillopora_meandrina_HIv1.assembly.fa
Alignments: /home/shared/8TB_HDD_01/sam/gitrepos/deep-dive/F-Pmea/output/13.1-Pmea-sRNAseq-ShortStack-R1-reads/ShortStack_out/merged_alignments.bam
Location: Pocillopora_meandrina_HIv1___Sc0000003:10129514-10129606 minus
Post-script file name: /home/shared/8TB_HDD_01/sam/gitrepos/deep-dive/F-Pmea/output/13.1-Pmea-sRNAseq-ShortStack-R1-reads/ShortStack_out/strucVis/Cluster_1432.ps
Locus Name: Cluster_1432
UUGCUGUUUCAGCUGUAUAUCGAUGUACUUCAGAGCAAUUUUUUUUACAAAAAUUGCUCCGAAAUACAUCUAUGUAACGUUGAAAAUUUAUUG
......(((((((..(((((.((((((.(((.(((((((((((.....))))))))))).))).)))))).)))))..)))))))........ (-31.20)
........UCAGCUGUAUAUCGAcGUAC................................................................. len:20 al:1
...................cCGAUGUACUUCAGAGCAAUUUUU.................................................. len:24 al:1
....................CGAUGUACUUCAGAGCAAUUUUUUa................................................ len:25 al:14
....................CGAUGUACUUCAGAGCAAUUUUc.................................................. len:23 al:304
....................CGAUGUACUcCAGAGCAAUUUUU.................................................. len:23 al:5
....................CGAUGUACUUCAGAGaAAUUUUU.................................................. len:23 al:3
....................CGAUGUACUUCAGAGCAAUUUaUU................................................. len:24 al:1
....................CGAUGcACUUCAGAGCAAUUUU................................................... len:22 al:1
....................uGAUGUACUUCAGAGCAAUUUUUU................................................. len:24 al:3
....................CGAUGUACUUCAGAGCAAgU..................................................... len:20 al:1
....................CGAUGUACUUCgGAGCA........................................................ len:17 al:1
....................gGAUGUACUUCAGAGCAAUUUUU.................................................. len:23 al:10
....................CGAUGUACUUCAGAGCA........................................................ len:17 al:25
....................CGAUGUACgUCAGAGCAAUUUUU.................................................. len:23 al:1
....................CGAUGUACcUCAGAGCAAUUUUUU................................................. len:24 al:5
....................CGAUGUACUUCAGAGCAAUUUUUUU................................................ len:25 al:44
....................CGAaGUACUUCAGAGCAAUUUUU.................................................. len:23 al:1
....................CGAUGUACUaCAGAGCAAUUUUU.................................................. len:23 al:1
....................CGgUGUACUUCAGAGCAAUUUUU.................................................. len:23 al:15
....................CGAUGUACUUCAGgGCAAUUUUU.................................................. len:23 al:14
....................CGAUGUACUUCAGAGCAAUUU.................................................... len:21 al:40
....................CaAUGUACUUCAGAGCAAUUUUUU................................................. len:24 al:13
....................CGAUGUACUUCAGAGu......................................................... len:16 al:3
....................CGAUGUACUUCAGAGCAAc...................................................... len:19 al:1
....................CGAUGUACUUCAGAGuAAUUUUUU................................................. len:24 al:2
....................CGAUGUACUUCAGAGCgAUU..................................................... len:20 al:1
....................CGAUGcACUUCAGAGCAAUUUUU.................................................. len:23 al:6
....................CGAUGUACUUCAGAcCAAUUUUUU................................................. len:24 al:1
....................CGAUGUACUUCAGAGCAAUUgU................................................... len:22 al:1
....................CGAUGUACUUCAGAGCAAUUcUUU................................................. len:24 al:1
....................CGAUGUACUUCAGAGCAAcUUUU.................................................. len:23 al:3
....................aGAUGUACUUCAGAGCAAUUUUUU................................................. len:24 al:1
....................CGAUGUACUUCAGAGCAAUUUUaU................................................. len:24 al:5
....................CGAUGUACUUCAGAGCg........................................................ len:17 al:1
....................CGAUGUACUUCAGAGCAAUUcUU.................................................. len:23 al:3
....................CGAUGUACUUCAGAGCgAUUUUU.................................................. len:23 al:5
....................CGAUGUACUUCAGAGCAAUUUU................................................... len:22 al:123
....................CGAUGUACUUCAGuGCAAUUUUUU................................................. len:24 al:1
....................CuAUGUACUUCAGAGCAAUUUUUU................................................. len:24 al:1
....................CGAUGUACUUCAGAGCAAU...................................................... len:19 al:24
....................CGAUGUACUUCAGAGCAAUUUcU.................................................. len:23 al:3
....................CGAUGUACUUCAGAGCAAUgUUU.................................................. len:23 al:2
....................CGAUGUACUUCAGAaCAAUUUUU.................................................. len:23 al:3
....................CGAcGUACUUCAGAGCAAUUUUU.................................................. len:23 al:10
....................CGAUGUACUUCAGAGCgAU...................................................... len:19 al:1
....................CGgUGUACUUCAGAGCAAUUUUUU................................................. len:24 al:6
....................CGAUGUACUUCAGAGCAAUUUUUUUU............................................... len:26 al:1
....................CGAUGUACUUCAGAGCAAUcUUU.................................................. len:23 al:2
....................CGAUGUACUUCAGAGCAAUUUUUc................................................. len:24 al:126
....................CGAUGUACUUCAGAGCAAUUUUcU................................................. len:24 al:1
....................CGAUGUACUUCAGAGCAAUU..................................................... len:20 al:88
....................CGAUGUACUUCAGAGCAAUcUU................................................... len:22 al:1
....................CGAUGUACUUCAGAGCAAUUgUU.................................................. len:23 al:1
....................CGAUGUACUUCAGAGCAAUUUa................................................... len:22 al:3
....................CGAUGUACUUCAGAGCAAUUUUgUU................................................ len:25 al:1
....................CGAUGUACUUCgGAGCAAUUUUU.................................................. len:23 al:7
....................CGAUGUACUUCAGAGCAgUUUUUU................................................. len:24 al:2
....................aGAUGUACUUCAGAGCAAUUUUU.................................................. len:23 al:7
....................CGgUGUACUUCAGAGCAAUUU.................................................... len:21 al:2
....................CGAUGUACUUCAGAG.......................................................... len:15 al:2
....................CGAUGUACUUCAGAGCAAcUUUUU................................................. len:24 al:4
....................CGAUGUACUUCAGAGCAAUUUUgU................................................. len:24 al:18
....................CGAUGUACUUCAGAGCAAUc..................................................... len:20 al:11
....................CGAUGUACUUCAGAGCAAUUUaU.................................................. len:23 al:3
....................CGgUGUACUUCAGAGCAAUUUU................................................... len:22 al:1
....................CuAUGUACUUCAGAGCAAUUUUU.................................................. len:23 al:2
....................CGAUGUACUUCAGAGCgAUUU.................................................... len:21 al:1
....................CGAUGUACUUCAGAGCAAUUUc................................................... len:22 al:11
....................CGgUGUACUUCAGAGCAAUU..................................................... len:20 al:1
....................CGAUGUACUUCAGgGCAAUUUUUU................................................. len:24 al:11
....................CGAUaUACUUCAGAGCAAUUUUU.................................................. len:23 al:3
....................gGAUGUACUUCAGAGCAAU...................................................... len:19 al:1
....................CGAUGUACUUCAGAGCAAUUgUUU................................................. len:24 al:1
....................CGuUGUACUUCAGAGCAAUUUUU.................................................. len:23 al:1
....................CGAUGUACUUCAGAGCAAUUUUUg................................................. len:24 al:1
....................CGAUGUACUUCAGAGCAAUUUUUU................................................. len:24 al:1082
....................gGAUGUACUUCAGAGCAAUU..................................................... len:20 al:1
....................CaAUGUACUUCAGAGCAAUUUUU.................................................. len:23 al:19
....................CGAUGUACUUCAGAGCAAUUUUUUUUACAAA.......................................... len:31 al:2
....................CGAUGUACcUCAGAGCAAUUUUU.................................................. len:23 al:6
....................CGAgGUACUUCAGAGCAAUUUUUU................................................. len:24 al:1
....................CGAUGUACUcCAGAGCAAUUUUUU................................................. len:24 al:1
....................CGAUuUACUUCAGAGCAAUUUUUU................................................. len:24 al:1
....................CGAUGUACUUCAGAGCAAUUUUUa................................................. len:24 al:345
....................CGAUGUACUUCAGAGCgAUUUUUU................................................. len:24 al:2
....................CGAUGUgCUUCAGAGCAAUUUUUU................................................. len:24 al:6
....................CGAUGUACUUCAGAGCAAUUUUUUaU............................................... len:26 al:4
....................uGAUGUACUUCAGAGCAAUUUUU.................................................. len:23 al:22
....................CGAUGUACUUCAGAGCAAUUUUUUc................................................ len:25 al:2
....................CGAUGUACUUCAGAGCAAUa..................................................... len:20 al:2
....................CGAUGaACUUCAGAGCAAUUUUU.................................................. len:23 al:1
....................CGAUGUACUUCAGAGCAuUUUU................................................... len:22 al:1
....................CGAUGUACUUuAGAGCAAUUUUU.................................................. len:23 al:10
....................CGAUGUACUUCAGAGCAAaUUUU.................................................. len:23 al:1
....................CGAUGUACUUCAGAGCAAUUUUUUUUACA............................................ len:29 al:1
....................CGAaGUACUUCAGAGCAAUUUUUU................................................. len:24 al:1
....................CGAUGUACcUCAGAGCAAUUUU................................................... len:22 al:1
....................CGAUGUACUUCAGAGCAAUUUUa.................................................. len:23 al:39
....................CGAUGUACUUCgGAGCAAUUUUUUU................................................ len:25 al:1
....................CGAUGUACUUCAGAGCAAUUUUUaU................................................ len:25 al:42
....................gGAUGUACUUCAGAGCAAUUUUUU................................................. len:24 al:1
....................CGAUGUACUUCcGAGCAAUUUUUU................................................. len:24 al:1
....................CGAUGUACUUCAGuGCAAUUUUU.................................................. len:23 al:2
....................CaAUGUACUUCAGAGCAAUUUU................................................... len:22 al:1
....................CGAUGUACUUCAGAGCAgUUUUU.................................................. len:23 al:5
....................CGAUGUACUUCAGAGCAAUUUgU.................................................. len:23 al:66
....................CGAUGUACUUCAGAGCAA....................................................... len:18 al:5
....................CuAUGUACUUCAGAGC......................................................... len:16 al:1
....................CGAUGUACUUCAGAGCuAUUUUUU................................................. len:24 al:1
....................CGAUGUACUUCAGAGCAuUUUUUU................................................. len:24 al:1
....................CGAUGUACUUCAGAGCAAUUc.................................................... len:21 al:7
....................CGAUGUACUUCAGAGCAAUUUUUUUa............................................... len:26 al:1
....................CGAUGUACUUCAGAGCAAUUUUg.................................................. len:23 al:5
....................CGAUGUACUUCAGAGCAAUUUUU.................................................. len:23 al:2791
....................CGAUGUACUUCAGAGCAAUUg.................................................... len:21 al:2
....................CGAUGUgCUUCAGAGCAAUUUUU.................................................. len:23 al:10
....................CGAUGUACaUCAGAGCAAUUUUUU................................................. len:24 al:1
....................CGAUGUAaUUCAGAGCAAUUUUU.................................................. len:23 al:2
....................CGAUGUACUUCgGAGCAAUUUUUU................................................. len:24 al:6
....................CGAUGUACUUCAGAGCAAUUUUUgU................................................ len:25 al:2
....................CGAUGUACUUCAGAGC......................................................... len:16 al:11
....................CGAcGUACUUCAGAGCAAUUUUUU................................................. len:24 al:6
.....................GAUGUACUUCAGAGCAAUUU.................................................... len:20 al:1
.....................GAUGUACUUCAGAGCAAUUUUU.................................................. len:22 al:8
.....................GAUGUACUUCAGAGCAAUUUUUc................................................. len:23 al:2
.....................GAUGUACUUCAGAGCAAUc..................................................... len:19 al:1
.....................GAcGUACUUCAGAGCAAUUUUUU................................................. len:23 al:2
.....................GAUGUACUUCAGAGCAAUUUUUUa................................................ len:24 al:1
..................................................AAAUUGCcCCGAAAUACAUCU...................... len:21 al:9
..................................................AAAgUGCUCCGAAAUACAUCU...................... len:21 al:2
..................................................AAAUUGCUCuGAAAUACAUCU...................... len:21 al:3
..................................................AAAUUGCUCCGAAAUAuAUCU...................... len:21 al:4
..................................................AAAUUGCUCCGAAAUACgUCU...................... len:21 al:15
..................................................AAAUUGCUCCGAAgUACAUCU...................... len:21 al:1
..................................................AAAUUGCUCCGAAAUACAUCUAU.................... len:23 al:1107
..................................................AAAUUGCUCCGAAAUAC.......................... len:17 al:3
..................................................AAAUUGCUCCGAAAUACAUCUcU.................... len:23 al:7
..................................................AAAUUGCUCCGAAAUACAUCUAUa................... len:24 al:11
..................................................AAAUUGCUCCGAAAcACAUCU...................... len:21 al:4
..................................................AAAUUGCUCCGAAAUACAUaU...................... len:21 al:7
..................................................AAAcUGCUCCGAAAUACAUCUAU.................... len:23 al:6
..................................................AAAUUGCUCCGAAAUACAUa....................... len:20 al:1
..................................................AAAUUGCUCCGAAAUgCAUCUAU.................... len:23 al:2
..................................................AAAUUGCUCCGuAAUACAUCUAU.................... len:23 al:3
..................................................AAAUUGCUCCGgAAUACAUCUAU.................... len:23 al:5
..................................................AAAUUGCUCCGAAgUACAUCUA..................... len:22 al:1
..................................................AAAUUGCUCCGAAAUACA......................... len:18 al:5
..................................................AAAUUGCUCCGAAgUACAUCUAU.................... len:23 al:6
..................................................AAAUUGCUCCGAAAUAuAUCUAU.................... len:23 al:1
..................................................AAAUUGCUCCGAAAUACgUC....................... len:20 al:2
..................................................AAAUUGCUCCGAAAUACAcCU...................... len:21 al:5
..................................................AAAUUGCUCCGAAAUACAUuU...................... len:21 al:3
..................................................AAAUUGCUCCGAAAUACgUCUAU.................... len:23 al:10
..................................................AAAUUGCUCCGAAAUACAc........................ len:19 al:1
..................................................AAAUUGCUCCGAAAUACAUCU...................... len:21 al:1984
..................................................AAcUUGCUCCGAAAUACAUCUAU.................... len:23 al:27
..................................................AAAUcGCUCCGAAAUACAUCUAU.................... len:23 al:3
..................................................AAgUUGCUCCGAAAUACAUCU...................... len:21 al:9
..................................................AAAUUGCUCCGAAAUuCAUCUAU.................... len:23 al:1
..................................................AAAUUGCUCCGgAAUACAUCU...................... len:21 al:8
..................................................AAgUUGCUCCGAAAUACAUCUAU.................... len:23 al:3
..................................................gAAUUGCUCCGAAAUACAUCUAU.................... len:23 al:6
..................................................AAAUUGCUCCGAAAUACAUCgAU.................... len:23 al:1
..................................................AAAUUGCUCCGAAAUgCAUCU...................... len:21 al:3
..................................................cAAUUGCUCCGAAAUACAUCUAU.................... len:23 al:6
..................................................AAAUUGCUaCGAAAUACAUCU...................... len:21 al:1
..................................................AcAUUGCUCCGAAAUACAUCU...................... len:21 al:4
..................................................AAAUUGaUCCGAAAUACAUCU...................... len:21 al:1
..................................................uAAUUGCUCCGAAAUACAUCU...................... len:21 al:4
..................................................AAAUUGCUCCGAAAUACAUCa...................... len:21 al:732
..................................................AAAUUGCUCCGAAAUACAaCU...................... len:21 al:1
..................................................AAAUUGCUCCGAAAgACAUCU...................... len:21 al:1
..................................................AAAUUGCUuCGAAAUACAUCU...................... len:21 al:2
..................................................AAAUUGCUCCGAAAUACAUCUAUc................... len:24 al:8
..................................................AAAUUGCUCCGAAAUACAUCUAUu................... len:24 al:40
..................................................AAAUUGCUCCGAAAUACAgCU...................... len:21 al:3
..................................................AAAUcGCUCCGAAAUACAUCU...................... len:21 al:4
..................................................AAAcUGCUCCGAAAUACAUCU...................... len:21 al:5
..................................................uAAUUGCUCCGAAAUACAUCUAU.................... len:23 al:2
..................................................AAAUUGCUCCGAAAUACg......................... len:18 al:1
..................................................AAAUUGuUCCGAAAUACAUCU...................... len:21 al:3
..................................................AAAUUGCUCCGAAAUACAUCUA..................... len:22 al:82
..................................................AAAUaGCUCCGAAAUACAUCU...................... len:21 al:1
..................................................AAAUUGCUCCGAAAUACcUCU...................... len:21 al:2
..................................................AAcUUGCUCCGAAAUACAUCU...................... len:21 al:37
..................................................gAAUUGCUCCGAAAUACAUCU...................... len:21 al:12
..................................................AAAUUGCaCCGAAAUACAUCU...................... len:21 al:3
..................................................AAAUUGCUCuGAAAUACAUCUAU.................... len:23 al:3
..................................................AAAUUGCUCCGAAcUACAUCUAU.................... len:23 al:1
..................................................AAAaUGCUCCGAAAUACAUCU...................... len:21 al:1
..................................................AAAUUGCUCCGAAAUACAUCUAc.................... len:23 al:194
..................................................AAAUUGCUCCGAAAUACAUCUAg.................... len:23 al:19
..................................................AAAUUGCUCCGAAAUACAa........................ len:19 al:1
..................................................uAAUUGCUCCGAAAUACAUCUA..................... len:22 al:1
..................................................AAAUUGCUCCGAAAUACAU........................ len:19 al:5
..................................................AAAUUGCUCCGAAAUACAUCUAa.................... len:23 al:47
..................................................AAAUUGCUCCGAAAUACAcCUAU.................... len:23 al:4
..................................................AAAUUGCUCCGAAAUACAUCUAcG................... len:24 al:2
..................................................AAAUUGCUCCGAAAUACAUCg...................... len:21 al:194
..................................................AAAUUGCUCCGAAAUACAUCc...................... len:21 al:524
..................................................AAAUUGuUCCGAAAUACAUCUAU.................... len:23 al:2
..................................................AuAUUGCUCCGAAAUACAUCU...................... len:21 al:2
..................................................AAAUUGCUCCGAAAUA........................... len:16 al:2
..................................................AAAaUGCUCCGAAAUACAUCUAU.................... len:23 al:1
..................................................AAAUUGCUaCGAAAUACAUCUAU.................... len:23 al:1
..................................................AAAUUGCUCCGAAAUAaAUCUAU.................... len:23 al:1
..................................................AgAUUGCUCCGAAAUACAUCU...................... len:21 al:11
..................................................AAAUUGCUCCGAAAcACAUCUAU.................... len:23 al:8
..................................................AAAUUGgUCCGAAAUACAUCUAU.................... len:23 al:1
..................................................cAAUUGCUCCGAAAUACAUCU...................... len:21 al:18
..................................................AAAUUGCUCCGAAAUACAUCcAU.................... len:23 al:1
..................................................AAAUUGCUCCGAAAU............................ len:15 al:19
..................................................AcAUUGCUCCGAAAUACAUCUA..................... len:22 al:1
..................................................AAAUUGCcCCGAAAUACAUCUAU.................... len:23 al:3
..................................................AAuUUGCUCCGAAAUACAUCU...................... len:21 al:2
..................................................AAAUUcCUCCGAAAUACAUCUAU.................... len:23 al:1
..................................................AAAUUGCUCCGAAAUACAUC....................... len:20 al:7
..................................................AAcUUGCUCCGAAAUACAUCUA..................... len:22 al:4
..................................................AcAUUGCUCCGAAAUACAUCUAU.................... len:23 al:2
..................................................AAAUUaCUCCGAAAUACAUCUAU.................... len:23 al:2
..................................................AAAUUGCUCCGAAAc............................ len:15 al:4
..................................................AAAUUGCUCCGAAAUACAUCUgU.................... len:23 al:21
...................................................AAaUGCUCCGAAAUACAUCU...................... len:20 al:1
...................................................AAUUGCUCCGAAAUACAUCUAU.................... len:22 al:2
...................................................AAUUGCUCCGAAAUACAUCU...................... len:20 al:2
...................................................AAUUGCUCCGAAAUACAUCc...................... len:20 al:3
...................................................AAUUGCUCCGAAAUACgUCU...................... len:20 al:1
...................................................AAUUGCUCCGAAAUACAUCUAc.................... len:22 al:3
...................................................AAUUGCUCCGAAAUACA......................... len:17 al:2
....................................................AUUGCUCCGAAAUACAUCUA..................... len:20 al:1
....................................................AUUGCUCCGAAcUACAUCU...................... len:19 al:1
....................................................AUUGCUCCGAAAUACAUCUAU.................... len:21 al:9
....................................................AUUGCUCCGAAAUACAUCU...................... len:19 al:16
....................................................AUUGCUCCGAAAUACAUCUAc.................... len:21 al:2
....................................................AUUGCUCCGAAAUACAUCc...................... len:19 al:5
....................................................AUUGCUCCGAAAUACAUCa...................... len:19 al:9
.....................................................UUGCUCCGAAAUACAUuU...................... len:18 al:1
.....................................................UUGCUCCGAAAUACAUgU...................... len:18 al:1
.....................................................UUGCUCCGAAAUACAUCU...................... len:18 al:82
.....................................................UUGCUCCGAAAUACAUCUAU.................... len:20 al:28
.....................................................UcGCUCCGAAAUACAUCU...................... len:18 al:1
.....................................................aUGCUCCGAAAUACAUCUAU.................... len:20 al:1
.....................................................UUGCUCCGAAAUACAUCUAc.................... len:20 al:2
.....................................................UUGCUCCGAAAUACAUCa...................... len:18 al:34
.....................................................UUGCUCCGAAAUACAUCUAUu................... len:21 al:2
.....................................................UUGCUCCGAAAUACAUCUAa.................... len:20 al:3
.....................................................UUGCUCCGAAAUACAUCUA..................... len:19 al:1
.....................................................UUGCUCCGAAAUACAUCUAUc................... len:21 al:1
.....................................................UUGCUCCGAAAUACAc........................ len:16 al:1
.....................................................UcGCUCCGAAAUACAUCUAU.................... len:20 al:1
.....................................................UUGCUCCGAAAUACAUCc...................... len:18 al:21
.....................................................UUGCUCCGAAAUACAUCg...................... len:18 al:12
......................................................UGCUCCGAAAUACAUCUAU.................... len:19 al:1
......................................................UGCUCCGAAAUACAUCa...................... len:17 al:1