Genome: /home/shared/8TB_HDD_01/sam/gitrepos/deep-dive/F-Pmea/data/Pocillopora_meandrina_HIv1.assembly.fa
Alignments: /home/shared/8TB_HDD_01/sam/gitrepos/deep-dive/F-Pmea/output/13.1-Pmea-sRNAseq-ShortStack-R1-reads/ShortStack_out/merged_alignments.bam
Location: Pocillopora_meandrina_HIv1___Sc0000003:495066-495158 plus
Post-script file name: /home/shared/8TB_HDD_01/sam/gitrepos/deep-dive/F-Pmea/output/13.1-Pmea-sRNAseq-ShortStack-R1-reads/ShortStack_out/strucVis/Cluster_1232.ps
Locus Name: Cluster_1232
AAACUGCUGUCUGUGGACAUGGUGAAAGUCGCUUCAAUAAACAUUUGACUGUAUAUUGUACGACUCUCAUCGUGUCCAAGGCGGCCUCGACCG
.....(((((((.((((((((((((.(((((...(((((.(((......))).)))))..))))).)))))))))))))))))))........ (-40.80)
...................UGGUGAAAGUCGCUUCAAUAAACA.................................................. len:24 al:2
....................aGUGAAAGUCGCUUCAAUAAACA.................................................. len:23 al:1
....................GGUGAAAGUCGCUUCAAUAAA.................................................... len:21 al:1
....................GGUGAAAGUCGCUUCAAUAAACA.................................................. len:23 al:8
..................................................GUAUAUUGUACGACUCUCAUCGgG................... len:24 al:1
...................................................UAUAUUGUACGACUCUCAUu...................... len:20 al:1
...................................................UAUAUcGUACGACUCUCAUCGUG................... len:23 al:1
...................................................UAUAUUGUACGACUCUCAUCGUc................... len:23 al:8
...................................................UAUAUUGUACGACUCUCAUCGUa................... len:23 al:34
...................................................UAUAUUGUACGACUCUCAUCGUG................... len:23 al:62
...................................................UAUAUUGUACGACUCUCAUuGU.................... len:22 al:11
...................................................UAUAUUGUACGACUCUCAUCGUGc.................. len:24 al:6
...................................................UAUAaUGUACGACUCUCAUCGU.................... len:22 al:3
...................................................UAcAUUGUACGACUCU.......................... len:16 al:1
...................................................UAUAUUGUgCGACUCUCAUCG..................... len:21 al:1
...................................................UAUAUUGUACGgCUCUCAUCGUG................... len:23 al:1
...................................................UAUAUUGUACGACUCUCAU....................... len:19 al:4
...................................................UAUAUUGUACGACUCUCAUCa..................... len:21 al:4
...................................................UAUAUUGUACGACUCUCAcC...................... len:20 al:1
...................................................UAUAUUGUACGACUCUCAUCGa.................... len:22 al:43
...................................................UAUAUUGUACGACUuUCAUCGU.................... len:22 al:1
...................................................UAUAUUGUACGACUCUCA........................ len:18 al:2
...................................................cAUAUUGUACGACUCUCAUC...................... len:20 al:2
...................................................cAUAUUGUACGACUCUCAUCGUG................... len:23 al:1
...................................................UAUAUUGUACGACUCUCAUC...................... len:20 al:54
...................................................UAUAUUGUACGACUCUCAUCGUGa.................. len:24 al:4
...................................................aAUAUUGUACGACUCUCAUC...................... len:20 al:1
...................................................UAUAUUGUgCGACUCUCAUCGUG................... len:23 al:1
...................................................UAUAUUGUACGACUCUCgUC...................... len:20 al:1
...................................................UAUAUUGUACGACUa........................... len:15 al:1
...................................................UAUAUUGUgCGACUCUCAUCGU.................... len:22 al:1
...................................................UAUAUUGUgCGACUCU.......................... len:16 al:2
...................................................UAUAUUGUACGgCUCUCAUCGU.................... len:22 al:1
...................................................UAUAUUGUACGACUCUCAUCGg.................... len:22 al:32
...................................................UAUAUUGUACGACUCUCAUCGUGUa................. len:25 al:2
...................................................aAUAUUGUACGACUCUCAUCGU.................... len:22 al:3
...................................................UAUAUUGUACGACUCUCAUCGUGUu................. len:25 al:4
...................................................UgUAUUGUACGACUCUCAUCGU.................... len:22 al:1
...................................................UAcAUUGUACGACUCUCAUCGU.................... len:22 al:1
...................................................UAUAUUGUACGACUCUCAUa...................... len:20 al:3
...................................................UAUAUUGUACGACUCUC......................... len:17 al:3
...................................................UAUAUUGUACGACUCUCAUCGUu................... len:23 al:30
...................................................UAUAUUGUACGACUCUCAaCGU.................... len:22 al:1
...................................................UAUAUUGUACGACUCUCAUCcU.................... len:22 al:6
...................................................UAUAUUGUACGACcCUCAUCGU.................... len:22 al:1
...................................................UAUAUUGUACGACUCUCAUCGcG................... len:23 al:4
...................................................UAUAUUGUAuGACUCUCAUCGU.................... len:22 al:2
...................................................UAUAUcGUACGACUCUC......................... len:17 al:1
...................................................UAUAUUGUACGACUCUCAUCaU.................... len:22 al:13
...................................................UAUAUUGUACGACUCU.......................... len:16 al:6
...................................................UAUAUUGcACGACUCUCAUCGU.................... len:22 al:1
...................................................UAUAUUGUACGACUCUCAUCGgG................... len:23 al:12
...................................................UAUAUUGUACGACUCUCAUCGUGU.................. len:24 al:22
...................................................UgUAUUGUACGACUCUCAUCGUGU.................. len:24 al:1
...................................................UAaAUUGUACGACUCUCAUCGU.................... len:22 al:1
...................................................UAUAUUGUACGACUCUCAUCG..................... len:21 al:6
...................................................UAUAUUGUACGACUCcCAUCGU.................... len:22 al:1
...................................................UAUAUUGUACGACUC........................... len:15 al:1
...................................................UAUAUUGUACGACUCUCAUCGaG................... len:23 al:1
...................................................UAUAUUGUACGACUCUCAUCGU.................... len:22 al:425
...................................................UAUAUUGUACGACUCUCAUCGUuU.................. len:24 al:4
...................................................cAUAUUGUACGACUCUCAUCGU.................... len:22 al:4
...................................................UAUAUUGUACGACUCUCAUuGUG................... len:23 al:2
...................................................UAUAUUGUACGACUCUCAUCGUGg.................. len:24 al:4
...................................................UAUAUUGUACGACUCUCAcCGU.................... len:22 al:1
...................................................UAUAUUGUACGACUCUCAUCGc.................... len:22 al:109
...................................................UAUAcUGUACGACUCUCAUCGU.................... len:22 al:1
...................................................UAUAUUGUACGACUCa.......................... len:16 al:4
....................................................AUAUUGUACGACUCUCAUCGgG................... len:22 al:1
....................................................AUAUUGUACGACUCUCAUCGU.................... len:21 al:1
.....................................................UAUUGUACGACUCUCgU....................... len:17 al:1
.....................................................UAUUGUACGACUCUCAUCGU.................... len:20 al:1
.....................................................UAUUGUACGACUCUCAU....................... len:17 al:1
.............................................................................AAGGCuGCCUCGACC. len:15 al:1