Genome: /home/shared/8TB_HDD_01/sam/gitrepos/deep-dive/F-Pmea/data/Pocillopora_meandrina_HIv1.assembly.fa
Alignments: /home/shared/8TB_HDD_01/sam/gitrepos/deep-dive/F-Pmea/output/13.1-Pmea-sRNAseq-ShortStack-R1-reads/ShortStack_out/merged_alignments.bam
Location: Pocillopora_meandrina_HIv1___Sc0000002:16106559-16106650 plus
Post-script file name: /home/shared/8TB_HDD_01/sam/gitrepos/deep-dive/F-Pmea/output/13.1-Pmea-sRNAseq-ShortStack-R1-reads/ShortStack_out/strucVis/Cluster_1183.ps
Locus Name: Cluster_1183
CUGAAAUACAGCUGAAGCCUGAUGGGCGAUAAGGAUUCACAUCUUUAAGGUGUUAUUUUUAUCGUCCAUUAGGAUUUGCGUGUAAAGAUACC
......((((((.(((.(((((((((((((((((((..((((((...)))))).))))))))))))))))))).))))).))))........ (-36.40)
....................GAUGGGCGAUAAGGAUUCACAUCa................................................ len:24 al:1
....................aAUGGGCGAUAAGGAUUCACAU.................................................. len:22 al:1
....................GAUGGGCGAUAAGGAUUCACAUaU................................................ len:24 al:1
....................GAUGGGCGAUAAGGAUUCACAUCaU............................................... len:25 al:1
....................GAUGGGCGAUAAGGAUUCACu................................................... len:21 al:3
....................GAUGGGCGAUAAGGAUUCACAUCUUUu............................................. len:27 al:1
....................GAUGGGCGAUAAGGAUUCACAc.................................................. len:22 al:2
....................GAUGGGCGAUAAGGAUUCACAUu................................................. len:23 al:13
....................GAUGGGCGAUAAaGAUUCACAUC................................................. len:23 al:1
....................GAUGGGCGAUAAGGAUUCACg................................................... len:21 al:2
....................GAUGGGCGAUAAGGAUUCAC.................................................... len:20 al:3
....................GAUGGGCGAUAAGGAUUCACgUC................................................. len:23 al:1
....................GAUGGGCGAUAAGGAUUCACAUCUUUAAGGU......................................... len:31 al:1
....................GAUGGGCGAUAAGGAUUCA..................................................... len:19 al:1
....................GAUGGGCGAUAAGGAUUCACAUCU................................................ len:24 al:2
....................GAUGGGCGAUAAGGAUUCACAU.................................................. len:22 al:11
....................GAUGGGCGAUAAGGAUUCACAUCUUUAAGa.......................................... len:30 al:1
....................GAUGGGCGAUAAGGAUUCACA................................................... len:21 al:13
....................GAUGGGCGAUAAGGAUUCACAUC................................................. len:23 al:29
....................GAUGGGCGAUAAGGAUUCACAUCUUU.............................................. len:26 al:1
....................GgUGGGCGAUAAGGAUUCACA................................................... len:21 al:2
....................GAUGGGCGAUAAGGAUUCACAUCUUUAAGG.......................................... len:30 al:2
....................GAUGGGCGAUAAGGAUUCACAUa................................................. len:23 al:1
.....................AUGGGCGAUAAGGAUUCACAUCU................................................ len:23 al:1
.....................AUGGGCGAUAAGGAUUCACAUCg................................................ len:23 al:1
.....................AUGGGCGAUAAGGAUUCACu................................................... len:20 al:1
.....................AUGGGCGAUAAGGAUUCACAUCa................................................ len:23 al:2
.....................AUGGGCGAUAAGGAUUCACAU.................................................. len:21 al:2
......................UGGGCGAUAAGGAUUCACAUCU................................................ len:22 al:5
......................UGGGCGAUAAGGAUUCACAUC................................................. len:21 al:8
......................UGGGCGAUAAGGAUUCACAUCa................................................ len:22 al:3
......................UGGGuGAUAAGGAUUCACAUCU................................................ len:22 al:1
......................UGGGCGAUAAGGAUUCACAU.................................................. len:20 al:1
......................UGGGCGAUAAGGAUUC...................................................... len:16 al:1
......................UGGGCGAUAAGGAUUCACAUu................................................. len:21 al:6
........................GGCGAUAAGGAUUCACAUCa................................................ len:20 al:1
...............................................AGGUGUUAUUUUUAUCGUCCAUUAGcA.................. len:27 al:1
.................................................GUGUUAUUUUUAUCGUCCAUUAGu................... len:24 al:1
.................................................GUGUUAUUUUUAUCGUCCAUUAGuA.................. len:25 al:1
..................................................UGUUgUUUUUAUCGUCCAUUAGG................... len:23 al:1
..................................................UGUUAUUUUUAUCGUCCcUUAG.................... len:22 al:1
..................................................UGUUAUUUUUAUCGUCCAUUAGGu.................. len:24 al:2
..................................................gGUUAUUUUUAUCGUCCAUU...................... len:20 al:1
..................................................UGUUAUUUUUAUCGcCCAUU...................... len:20 al:3
..................................................UGUUAUUUUUAUCGUuCAUU...................... len:20 al:1
..................................................UGUUAUUUUUAUCGUCCAcUA..................... len:21 al:1
..................................................UGUUgUUUUUAUCGUCCAUU...................... len:20 al:1
..................................................aGUUAUUUUUAUCGUCCAUUAGG................... len:23 al:1
..................................................UGUUAUUUUUAUCGUCCAcU...................... len:20 al:15
..................................................UGcUAUUUUUAUCGUCCAUU...................... len:20 al:1
..................................................UGUUAUUUUUAUCGUCCAUgAGG................... len:23 al:1
..................................................cGUUAUUUUUAUCGUCCAUUAG.................... len:22 al:1
..................................................UGUUAUUUUUAUCGUCCg........................ len:18 al:2
..................................................UGcUAUUUUUAUCGUCCAUUAG.................... len:22 al:1
..................................................UGUUAUUUUUAUCGUCCAUUAGc................... len:23 al:267
..................................................UGUUAUUUUUAUCGUCCAUU...................... len:20 al:739
..................................................cGUUAUUUUUAUCGUCCAUU...................... len:20 al:2
..................................................UGUUAUUUUUAUCGUCCAUUAa.................... len:22 al:7
..................................................UGUUAUcUUUAUCGUCCAUU...................... len:20 al:1
..................................................UGUUAUUUUcAUCGUCCAUU...................... len:20 al:2
..................................................UGUUAUUUUUAUCGUCCAUc...................... len:20 al:113
..................................................UGUUAUUUUUAUCGUCCAUUAGaA.................. len:24 al:2
..................................................UGUUAUUUUUAUCGUCCAaU...................... len:20 al:6
..................................................UGUUAUUUUUAUCGUCCAU....................... len:19 al:6
..................................................UGUUAUUUUUAUCGUCCAUUg..................... len:21 al:1
..................................................UGUUAUUUUUAUCGUCCAUUAGG................... len:23 al:54
..................................................aGUUAUUUUUAUCGUCCAUU...................... len:20 al:4
..................................................UGUUAUUUUUAUCGUCCAUUAGuA.................. len:24 al:21
..................................................UGUUAUUUUUAUCGUCCgUU...................... len:20 al:4
..................................................UGUUAUUUUcAUCGUCCAUUAG.................... len:22 al:1
..................................................UGUUAUUUUUAUCGUCCA........................ len:18 al:1
..................................................UGUUAUUUUUAUCGUCCAgU...................... len:20 al:19
..................................................UGUUAUUUUUAUCGUCCAUUcGG................... len:23 al:4
..................................................UGUUAUUaUUAUCGUCCAUU...................... len:20 al:1
..................................................UGUUAUUUUUgUCGUCCAUU...................... len:20 al:2
..................................................UGUUAUUUUUAUCGUCCAUUgG.................... len:22 al:1
..................................................UGUUAUUUUUAUCGUCCAUUAu.................... len:22 al:1
..................................................UcUUAUUUUUAUCGUCCAUU...................... len:20 al:1
..................................................UGUUAUUUUUAUCGUCCAgUA..................... len:21 al:1
..................................................UGUUAUUUUUAUCGUCgAUU...................... len:20 al:1
..................................................UGUUAUUUUUAUCGUCCAUUAG.................... len:22 al:145
..................................................UGUUAUUUUUAUCGUCCAUUuG.................... len:22 al:2
..................................................UGUUAUUUUUAUCGUCCAUg...................... len:20 al:9
..................................................UGUUAUUUUUAUCGUCCAUUAGa................... len:23 al:49
..................................................UGUUAUUUUUAUCGUCCAUUAc.................... len:22 al:3
..................................................UGUUAUUUUUAUCGUCCAUUcG.................... len:22 al:14
..................................................UaUUAUUUUUAUCGUCCAUU...................... len:20 al:2
..................................................UGUUAUUUUUAUCGUCCAUUuGG................... len:23 al:2
..................................................UGUUAUUUUUAUCGUCCAUUAGu................... len:23 al:1136
..................................................UGUUAUUUUUAUCGUCCuUU...................... len:20 al:1
..................................................UGUUAUUUUUAUCGUCuAUU...................... len:20 al:1
..................................................UGUUAUUUUUAUCGUCCAUUA..................... len:21 al:18
..................................................UGUUAUUUUUAUCGUCCAUa...................... len:20 al:73
...................................................GUUAUUUUUAUCGUCCAUUAGu................... len:22 al:1
...................................................GUUAUUUUUAUCGUCCAUU...................... len:19 al:5
....................................................UUAUUUUUAUCGUCCAUUAGu................... len:21 al:3
....................................................UUAUUUUUAUCGUCCAUUAGc................... len:21 al:1
....................................................UUAUUUUUAUCGUCCAUU...................... len:18 al:4
.....................................................UAUUUUUAUCGUCCAUUAGu................... len:20 al:1
......................................................AUUUUUAUCGUCCAUUAGu................... len:19 al:1