Genome: /home/shared/8TB_HDD_01/sam/gitrepos/deep-dive/F-Pmea/data/Pocillopora_meandrina_HIv1.assembly.fa
Alignments: /home/shared/8TB_HDD_01/sam/gitrepos/deep-dive/F-Pmea/output/13.1-Pmea-sRNAseq-ShortStack-R1-reads/ShortStack_out/merged_alignments.bam
Location: Pocillopora_meandrina_HIv1___Sc0000002:15749261-15749351 plus
Post-script file name: /home/shared/8TB_HDD_01/sam/gitrepos/deep-dive/F-Pmea/output/13.1-Pmea-sRNAseq-ShortStack-R1-reads/ShortStack_out/strucVis/Cluster_1171.ps
Locus Name: Cluster_1171
AGGAAAUUUUUGUCACCUUUACGGCAUCACUUGUUAGCAUUAUUUACUAACGCUAGGAAGGGAUGCCGGGAAGGCGAUAGAACAUUUGACG
...(((((((((((.((((..(((((((.(((.(((((.(((.....))).))))).))).)))))))..)))).))))))).)))).... (-36.20)
....................ACGGCAUCACUUGUUAGCAUUA................................................. len:22 al:3
....................ACGGCAUCACUUGUUAGCAUUAUa............................................... len:24 al:2
....................ACGGCAUCACUUGUUAGCAg................................................... len:20 al:1
..........................................UUUACUAACGCUAGGAAGGGAUGCCGGGA.................... len:29 al:1
.................................................ACGCUAGGAAGGGAUGCCGGu..................... len:21 al:3
.................................................ACGCUAGGAAGGGAUGCCGGGA.................... len:22 al:162
.................................................ACGCUAGGAAGGGAUGCCGGGAA................... len:23 al:5
.................................................ACGCUAGGAAGGGAUGCCGGaA.................... len:22 al:2
.................................................ACGCUgGGAAGGGAUGCCGGGA.................... len:22 al:1
.................................................ACGCUAGGAAGGGAUGCCGGG..................... len:21 al:21
.................................................ACaCUAGGAAGGGAUGCCGGGA.................... len:22 al:1
.................................................ACGCUAGGAAGGGAUGuCGGG..................... len:21 al:1
.................................................ACGCUAGGAAGGGAUGCCGGa..................... len:21 al:3
.................................................ACGCUAGGAAGGGAUGCCGGGu.................... len:22 al:14
.................................................ACGCUAGGAAGGGgUGCCGGGA.................... len:22 al:2
.................................................ACGCUAGGAAGGGAUGCCa....................... len:19 al:2
.................................................ACGCUAGGAAGGGAUGCC........................ len:18 al:1
.................................................ACGCUAGGAAGGGAUGCCGGGAu................... len:23 al:12
.................................................ACGCUAGGAAaGGAUGCCGGGA.................... len:22 al:1
.................................................ACGCUAGGAAGGGAUGCCGGGg.................... len:22 al:8
.................................................cCGCUAGGAAGGGAUGCCGGGA.................... len:22 al:1
.................................................ACGCUAGGAAGGGAUGCCG....................... len:19 al:2
.................................................ACGCUAGGAAGGGAUGCCGG...................... len:20 al:1
.................................................ACGCUAGGAAGGGAUGCCGGGc.................... len:22 al:3
.................................................ACGCUAGGAAGGGAUGCCGGGAg................... len:23 al:1
.................................................ACGCUAGGAAGGGAUGCaG....................... len:19 al:1
.................................................gCGCUAGGAAGGGAUGCCGGGA.................... len:22 al:1
.................................................AuGCUAGGAAGGGAUGCCGGG..................... len:21 al:1
........................................................GAAGGGAUGCCGGGA.................... len:15 al:1
...........................................................GGGAgGCCGGGAAGGC................ len:16 al:1
...........................................................GGGAUGCCGGGAAGu................. len:15 al:1