Building DAG of jobs...
File path /home/shared/8TB_HDD_02/shedurkin/deep-dive/F-Pmea/data/Pmea//Pocillopora_meandrina_HIv1.assembly.fasta contains double '/'. This is likely unintended. It can also lead to inconsistent results of the file-matching approach used by Snakemake.
Nothing to be done (all requested files are present and up to date).
Complete log: .snakemake/log/2023-11-30T084234.532475.snakemake.log
##gff-version 3
# MirMachine version: 0.2.12
# CM Models: Built using MirGeneDB 2.1(2022)
# Total families searched: 556
# Node: Metazoa
# Model: combined
# Genome file: /home/shared/8TB_HDD_02/shedurkin/deep-dive/F-Pmea/data/Pmea//Pocillopora_meandrina_HIv1.assembly.fasta
# Species: Pmea-MirMachine
# Params: /home/sam/programs/mambaforge/envs/mirmachine_env/bin/MirMachine.py --node Metazoa --species Pmea-MirMachine --genome /home/shared/8TB_HDD_02/shedurkin/deep-dive/F-Pmea/data/Pmea//Pocillopora_meandrina_HIv1.assembly.fasta --cpu 40 --add-all-nodes
# miRNAs families searched: ['BANTAM', 'IAB-4', 'LET-7', 'LSY-6', 'MIR-1', 'MIR-10', 'MIR-1000', 'MIR-1001', 'MIR-1003', 'MIR-1006', 'MIR-1007', 'MIR-101', 'MIR-1010', 'MIR-103', 'MIR-105', 'MIR-1175', 'MIR-1180', 'MIR-12', 'MIR-12085', 'MIR-12086', 'MIR-12087', 'MIR-122', 'MIR-12316', 'MIR-12355', 'MIR-12358', 'MIR-12366', 'MIR-12380', 'MIR-124', 'MIR-12404', 'MIR-1247', 'MIR-1249', 'MIR-1251', 'MIR-126', 'MIR-127', 'MIR-1271', 'MIR-1277', 'MIR-128', 'MIR-129', 'MIR-1296', 'MIR-1298', 'MIR-130', 'MIR-1301', 'MIR-1306', 'MIR-1307', 'MIR-132', 'MIR-1323', 'MIR-1329', 'MIR-133', 'MIR-134', 'MIR-1343', 'MIR-135', 'MIR-136', 'MIR-137', 'MIR-1379', 'MIR-138', 'MIR-1388', 'MIR-139', 'MIR-1397', 'MIR-14', 'MIR-140', 'MIR-1416', 'MIR-142', 'MIR-143', 'MIR-144', 'MIR-145', 'MIR-1451', 'MIR-146', 'MIR-1467', 'MIR-147', 'MIR-148', 'MIR-149', 'MIR-15', 'MIR-150', 'MIR-153', 'MIR-154', 'MIR-1540', 'MIR-1541', 'MIR-1542', 'MIR-1546', 'MIR-1547', 'MIR-1549', 'MIR-155', 'MIR-1552', 'MIR-1559', 'MIR-1641', 'MIR-1662', 'MIR-1677', 'MIR-17', 'MIR-1720', 'MIR-1729', 'MIR-1781', 'MIR-1788', 'MIR-1805', 'MIR-181', 'MIR-1817', 'MIR-184', 'MIR-1842', 'MIR-185', 'MIR-186', 'MIR-187', 'MIR-188', 'MIR-19', 'MIR-190', 'MIR-191', 'MIR-1911', 'MIR-1912', 'MIR-192', 'MIR-193', 'MIR-194', 'MIR-1955', 'MIR-196', 'MIR-1962', 'MIR-197', 'MIR-1984', 'MIR-1985', 'MIR-1986', 'MIR-1987', 'MIR-1989', 'MIR-199', 'MIR-1990', 'MIR-1992', 'MIR-1993', 'MIR-1994', 'MIR-1995', 'MIR-1996', 'MIR-1997', 'MIR-1998', 'MIR-2', 'MIR-2000', 'MIR-2001', 'MIR-2002', 'MIR-2004', 'MIR-2005', 'MIR-2006', 'MIR-2007', 'MIR-2008', 'MIR-2009', 'MIR-2010', 'MIR-2011', 'MIR-2012', 'MIR-2014', 'MIR-2015', 'MIR-2017', 'MIR-2018', 'MIR-2019', 'MIR-202', 'MIR-2020', 'MIR-2021', 'MIR-2022', 'MIR-203', 'MIR-2030', 'MIR-204', 'MIR-205', 'MIR-2056', 'MIR-2057', 'MIR-2058', 'MIR-2061', 'MIR-2062', 'MIR-2068', 'MIR-2070', 'MIR-2071', 'MIR-2072', 'MIR-2076', 'MIR-208', 'MIR-21', 'MIR-210', 'MIR-2114', 'MIR-2131', 'MIR-214', 'MIR-216', 'MIR-217', 'MIR-218', 'MIR-2184', 'MIR-2188', 'MIR-2189', 'MIR-219', 'MIR-2191', 'MIR-22', 'MIR-221', 'MIR-223', 'MIR-224', 'MIR-2279', 'MIR-23', 'MIR-230', 'MIR-231', 'MIR-2355', 'MIR-238', 'MIR-2387', 'MIR-24', 'MIR-242', 'MIR-246', 'MIR-248', 'MIR-2483', 'MIR-249', 'MIR-2499', 'MIR-2501', 'MIR-252', 'MIR-253', 'MIR-254', 'MIR-255', 'MIR-2582', 'MIR-2583', 'MIR-2584', 'MIR-26', 'MIR-2685', 'MIR-2686', 'MIR-2687', 'MIR-2689', 'MIR-2690', 'MIR-2691', 'MIR-2693', 'MIR-27', 'MIR-2705', 'MIR-2707', 'MIR-2722', 'MIR-275', 'MIR-276', 'MIR-2765', 'MIR-277', 'MIR-278', 'MIR-279', 'MIR-2796', 'MIR-28', 'MIR-281', 'MIR-282', 'MIR-284', 'MIR-29', 'MIR-2954', 'MIR-296', 'MIR-2970', 'MIR-298', 'MIR-2984', 'MIR-3', 'MIR-30', 'MIR-303', 'MIR-3049', 'MIR-305', 'MIR-3059', 'MIR-306', 'MIR-3068', 'MIR-3072', 'MIR-3075', 'MIR-3085', 'MIR-3099', 'MIR-31', 'MIR-3112', 'MIR-314', 'MIR-3140', 'MIR-3145', 'MIR-3146', 'MIR-315', 'MIR-316', 'MIR-317', 'MIR-3173', 'MIR-32', 'MIR-320', 'MIR-3200', 'MIR-324', 'MIR-325', 'MIR-326', 'MIR-328', 'MIR-33', 'MIR-330', 'MIR-331', 'MIR-335', 'MIR-337', 'MIR-338', 'MIR-339', 'MIR-34', 'MIR-340', 'MIR-342', 'MIR-345', 'MIR-346', 'MIR-350', 'MIR-351', 'MIR-355', 'MIR-357', 'MIR-358', 'MIR-36', 'MIR-361', 'MIR-3613', 'MIR-3617', 'MIR-362', 'MIR-370', 'MIR-374', 'MIR-375', 'MIR-376', 'MIR-378', 'MIR-383', 'MIR-384', 'MIR-392', 'MIR-3931', 'MIR-3934', 'MIR-4057', 'MIR-423', 'MIR-425', 'MIR-430', 'MIR-431', 'MIR-432', 'MIR-433', 'MIR-448', 'MIR-450', 'MIR-451', 'MIR-452', 'MIR-4524', 'MIR-4541', 'MIR-4542', 'MIR-4543', 'MIR-4544', 'MIR-4545', 'MIR-455', 'MIR-456', 'MIR-458', 'MIR-459', 'MIR-460', 'MIR-4677', 'MIR-4766', 'MIR-4813', 'MIR-4818', 'MIR-4819', 'MIR-4820', 'MIR-4824', 'MIR-4825', 'MIR-4826', 'MIR-4828', 'MIR-4829', 'MIR-483', 'MIR-4830', 'MIR-4831', 'MIR-4835', 'MIR-4838', 'MIR-4839', 'MIR-4857', 'MIR-4859', 'MIR-486', 'MIR-4860', 'MIR-4861', 'MIR-4862', 'MIR-4863', 'MIR-4864', 'MIR-4865', 'MIR-4866', 'MIR-4869', 'MIR-4871', 'MIR-4872', 'MIR-4873', 'MIR-4874', 'MIR-4876', 'MIR-4879', 'MIR-488', 'MIR-4880', 'MIR-4886', 'MIR-4887', 'MIR-4888', 'MIR-489', 'MIR-4891', 'MIR-490', 'MIR-491', 'MIR-493', 'MIR-4969', 'MIR-498', 'MIR-4983', 'MIR-499', 'MIR-504', 'MIR-505', 'MIR-506', 'MIR-511', 'MIR-52', 'MIR-5305', 'MIR-54', 'MIR-540', 'MIR-541', 'MIR-542', 'MIR-544', 'MIR-550', 'MIR-551', 'MIR-5735', 'MIR-574', 'MIR-576', 'MIR-577', 'MIR-579', 'MIR-582', 'MIR-584', 'MIR-589', 'MIR-590', 'MIR-592', 'MIR-598', 'MIR-599', 'MIR-605', 'MIR-615', 'MIR-62', 'MIR-624', 'MIR-628', 'MIR-64', 'MIR-642', 'MIR-651', 'MIR-652', 'MIR-6529', 'MIR-653', 'MIR-666', 'MIR-667', 'MIR-67', 'MIR-670', 'MIR-671', 'MIR-6715', 'MIR-672', 'MIR-673', 'MIR-674', 'MIR-675', 'MIR-676', 'MIR-7', 'MIR-70', 'MIR-700', 'MIR-71', 'MIR-7132', 'MIR-7133', 'MIR-7147', 'MIR-7148', 'MIR-7149', 'MIR-7180', 'MIR-722', 'MIR-723', 'MIR-724', 'MIR-7246', 'MIR-7247', 'MIR-725', 'MIR-7251', 'MIR-7254', 'MIR-726', 'MIR-7262', 'MIR-727', 'MIR-728', 'MIR-7281', 'MIR-7284', 'MIR-7286', 'MIR-729', 'MIR-7292', 'MIR-7293', 'MIR-73', 'MIR-7303', 'MIR-7304', 'MIR-7309', 'MIR-7319', 'MIR-732', 'MIR-7323', 'MIR-7327', 'MIR-7332', 'MIR-7333', 'MIR-7336', 'MIR-734', 'MIR-7363', 'MIR-7368', 'MIR-737', 'MIR-7370', 'MIR-7371', 'MIR-7373', 'MIR-7376', 'MIR-7377', 'MIR-7378', 'MIR-7379', 'MIR-7383', 'MIR-7385', 'MIR-7392', 'MIR-7394', 'MIR-7397', 'MIR-7398', 'MIR-744', 'MIR-7463', 'MIR-750', 'MIR-76', 'MIR-760', 'MIR-769', 'MIR-77', 'MIR-770', 'MIR-784', 'MIR-785', 'MIR-787', 'MIR-788', 'MIR-789', 'MIR-791', 'MIR-8', 'MIR-8160', 'MIR-85', 'MIR-86', 'MIR-87', 'MIR-872', 'MIR-873', 'MIR-874', 'MIR-875', 'MIR-876', 'MIR-877', 'MIR-879', 'MIR-885', 'MIR-887', 'MIR-9', 'MIR-90', 'MIR-92', 'MIR-927', 'MIR-929', 'MIR-932', 'MIR-934', 'MIR-935', 'MIR-9369', 'MIR-9388', 'MIR-944', 'MIR-95', 'MIR-9538', 'MIR-9540', 'MIR-955', 'MIR-956', 'MIR-957', 'MIR-959', 'MIR-96', 'MIR-960', 'MIR-961', 'MIR-9619', 'MIR-962', 'MIR-963', 'MIR-964', 'MIR-965', 'MIR-966', 'MIR-967', 'MIR-9681', 'MIR-9682', 'MIR-969', 'MIR-9690', 'MIR-9692', 'MIR-9696', 'MIR-9698', 'MIR-9699', 'MIR-970', 'MIR-9701', 'MIR-9703', 'MIR-9707', 'MIR-971', 'MIR-9717', 'MIR-972', 'MIR-973', 'MIR-974', 'MIR-975', 'MIR-976', 'MIR-977', 'MIR-978', 'MIR-982', 'MIR-983', 'MIR-984', 'MIR-985', 'MIR-9851', 'MIR-986', 'MIR-987', 'MIR-988', 'MIR-989', 'MIR-991', 'MIR-992', 'MIR-997', 'MIR-999']
Total runtime: 0:00:02.232567