#Starting miRDeep2 /home/shared/mirdeep2/bin/miRDeep2.pl /home/shared/8TB_HDD_01/sam/gitrepos/deep-dive/F-Pmea/output/11.1-Pmea-sRNAseq-miRdeep2-31bp-fastp-merged-cnidarian_miRBase/collapsed_reads_gt17bp_mirdeep2.fasta /home/shared/8TB_HDD_01/sam/gitrepos/deep-dive/F-Pmea/data/Pocillopora_meandrina_HIv1_nospaces.assembly.fasta /home/shared/8TB_HDD_01/sam/gitrepos/deep-dive/F-Pmea/output/11.1-Pmea-sRNAseq-miRdeep2-31bp-fastp-merged-cnidarian_miRBase/Pmea-mirdeep2-mapping.arf none /home/shared/8TB_HDD_01/sam/gitrepos/deep-dive/data/cnidarian-mirbase-mature-v22.1-no_spaces.fa none -t S.purpuratus -P -v -g -1 miRDeep2 started at 15:27:22 mkdir mirdeep_runs/run_22_04_2024_t_15_27_22 #testing input files started: 15:27:49 sanity_check_mature_ref.pl /home/shared/8TB_HDD_01/sam/gitrepos/deep-dive/data/cnidarian-mirbase-mature-v22.1-no_spaces.fa ended: 15:27:49 total:0h:0m:0s sanity_check_reads_ready_file.pl /home/shared/8TB_HDD_01/sam/gitrepos/deep-dive/F-Pmea/output/11.1-Pmea-sRNAseq-miRdeep2-31bp-fastp-merged-cnidarian_miRBase/collapsed_reads_gt17bp_mirdeep2.fasta started: 15:27:49 ended: 15:28:30 total:0h:0m:41s started: 15:28:30 sanity_check_genome.pl /home/shared/8TB_HDD_01/sam/gitrepos/deep-dive/F-Pmea/data/Pocillopora_meandrina_HIv1_nospaces.assembly.fasta ended: 15:28:30 total:0h:0m:0s started: 15:28:30 sanity_check_mapping_file.pl /home/shared/8TB_HDD_01/sam/gitrepos/deep-dive/F-Pmea/output/11.1-Pmea-sRNAseq-miRdeep2-31bp-fastp-merged-cnidarian_miRBase/Pmea-mirdeep2-mapping.arf ended: 15:28:35 total:0h:0m:5s Pre-quantitation is skipped caused by missing file with known precursor miRNAs rna2dna.pl /home/shared/8TB_HDD_01/sam/gitrepos/deep-dive/data/cnidarian-mirbase-mature-v22.1-no_spaces.fa > mirdeep_runs/run_22_04_2024_t_15_27_22/tmp/cnidarian-mirbase-mature-v22.1-no_spaces.fa ended: 15:28:36 total:0h:0m:6s #parsing genome mappings parse_mappings.pl /home/shared/8TB_HDD_01/sam/gitrepos/deep-dive/F-Pmea/output/11.1-Pmea-sRNAseq-miRdeep2-31bp-fastp-merged-cnidarian_miRBase/Pmea-mirdeep2-mapping.arf -a 0 -b 18 -c 25 -i 5 > mirdeep_runs/run_22_04_2024_t_15_27_22/tmp/mapping.arf_parsed.arf started: 15:28:36 ended: 15:29:10 total:0h:0m:34s #excising precursors started: 15:29:10 excise_precursors_iterative_final.pl /home/shared/8TB_HDD_01/sam/gitrepos/deep-dive/F-Pmea/data/Pocillopora_meandrina_HIv1_nospaces.assembly.fasta mirdeep_runs/run_22_04_2024_t_15_27_22/tmp/mapping.arf_parsed.arf mirdeep_runs/run_22_04_2024_t_15_27_22/tmp/precursors.fa mirdeep_runs/run_22_04_2024_t_15_27_22/tmp/precursors.coords -1 1 995574 ended: 15:30:38 total:0h:1m:28s #preparing signature prepare_signature.pl /home/shared/8TB_HDD_01/sam/gitrepos/deep-dive/F-Pmea/output/11.1-Pmea-sRNAseq-miRdeep2-31bp-fastp-merged-cnidarian_miRBase/collapsed_reads_gt17bp_mirdeep2.fasta mirdeep_runs/run_22_04_2024_t_15_27_22/tmp/precursors.fa 1 -o mirdeep_runs/run_22_04_2024_t_15_27_22/tmp/signature.arf 2>>error_22_04_2024_t_15_27_22.log started: 15:30:38 ended: 15:35:36 total:0h:4m:58s #folding precursors started: 15:35:36 RNAfold < mirdeep_runs/run_22_04_2024_t_15_27_22/tmp/precursors.fa -noPS > mirdeep_runs/run_22_04_2024_t_15_27_22/tmp/precursors.str ended: 18:14:02 total:2h:38m:26s #computing randfold p-values select_for_randfold.pl mirdeep_runs/run_22_04_2024_t_15_27_22/tmp/signature.arf mirdeep_runs/run_22_04_2024_t_15_27_22/tmp/precursors.str > mirdeep_runs/run_22_04_2024_t_15_27_22/tmp/precursors_for_randfold.ids started: 18:14:02 ended: 18:17:06 total:0h:3m:4s started: 18:17:06 fastaselect.pl mirdeep_runs/run_22_04_2024_t_15_27_22/tmp/precursors.fa mirdeep_runs/run_22_04_2024_t_15_27_22/tmp/precursors_for_randfold.ids > mirdeep_runs/run_22_04_2024_t_15_27_22/tmp/precursors_for_randfold.fa ended: 18:17:07 total:0h:0m:1s started: 18:17:07 randfold -s mirdeep_runs/run_22_04_2024_t_15_27_22/tmp/precursors_for_randfold.fa 99 > mirdeep_runs/run_22_04_2024_t_15_27_22/tmp/precursors_for_randfold.rand ended: 20:48:44 total:26h:31m:37s #running miRDeep core algorithm started: 20:48:51 miRDeep2_core_algorithm.pl mirdeep_runs/run_22_04_2024_t_15_27_22/tmp/signature.arf mirdeep_runs/run_22_04_2024_t_15_27_22/tmp/precursors.str -s mirdeep_runs/run_22_04_2024_t_15_27_22/tmp/cnidarian-mirbase-mature-v22.1-no_spaces.fa -v -50 -l 15 -y mirdeep_runs/run_22_04_2024_t_15_27_22/tmp/precursors_for_randfold.rand > mirdeep_runs/run_22_04_2024_t_15_27_22/output.mrd Negative repeat count does nothing at /home/shared/mirdeep2/bin/miRDeep2_core_algorithm.pl line 1458, line 2145246. Negative repeat count does nothing at /home/shared/mirdeep2/bin/miRDeep2_core_algorithm.pl line 1458, line 4958890. Negative repeat count does nothing at /home/shared/mirdeep2/bin/miRDeep2_core_algorithm.pl line 1458, line 6028014. Negative repeat count does nothing at /home/shared/mirdeep2/bin/miRDeep2_core_algorithm.pl line 1458, line 6191822. Negative repeat count does nothing at /home/shared/mirdeep2/bin/miRDeep2_core_algorithm.pl line 1458, line 6191830. Negative repeat count does nothing at /home/shared/mirdeep2/bin/miRDeep2_core_algorithm.pl line 1458, line 6210358. Negative repeat count does nothing at /home/shared/mirdeep2/bin/miRDeep2_core_algorithm.pl line 1458, line 6591440. Negative repeat count does nothing at /home/shared/mirdeep2/bin/miRDeep2_core_algorithm.pl line 1458, line 6920060. Negative repeat count does nothing at /home/shared/mirdeep2/bin/miRDeep2_core_algorithm.pl line 1458, line 7073161. Negative repeat count does nothing at /home/shared/mirdeep2/bin/miRDeep2_core_algorithm.pl line 1458, line 7370839. Negative repeat count does nothing at /home/shared/mirdeep2/bin/miRDeep2_core_algorithm.pl line 1458, line 7534951. Negative repeat count does nothing at /home/shared/mirdeep2/bin/miRDeep2_core_algorithm.pl line 1458, line 7931145. Negative repeat count does nothing at /home/shared/mirdeep2/bin/miRDeep2_core_algorithm.pl line 1458, line 8342251. Negative repeat count does nothing at /home/shared/mirdeep2/bin/miRDeep2_core_algorithm.pl line 1458, line 8414044. Negative repeat count does nothing at /home/shared/mirdeep2/bin/miRDeep2_core_algorithm.pl line 1458, line 8454920. Negative repeat count does nothing at /home/shared/mirdeep2/bin/miRDeep2_core_algorithm.pl line 1458, line 8570900. Negative repeat count does nothing at /home/shared/mirdeep2/bin/miRDeep2_core_algorithm.pl line 1458, line 8586295. Negative repeat count does nothing at /home/shared/mirdeep2/bin/miRDeep2_core_algorithm.pl line 1458, line 8586297. Negative repeat count does nothing at /home/shared/mirdeep2/bin/miRDeep2_core_algorithm.pl line 1458, line 8634912. Negative repeat count does nothing at /home/shared/mirdeep2/bin/miRDeep2_core_algorithm.pl line 1458, line 8634915. Negative repeat count does nothing at /home/shared/mirdeep2/bin/miRDeep2_core_algorithm.pl line 1458, line 8634917. Negative repeat count does nothing at /home/shared/mirdeep2/bin/miRDeep2_core_algorithm.pl line 1458, line 8651517. Negative repeat count does nothing at /home/shared/mirdeep2/bin/miRDeep2_core_algorithm.pl line 1458, line 8669272. Negative repeat count does nothing at /home/shared/mirdeep2/bin/miRDeep2_core_algorithm.pl line 1458, line 8669274. Negative repeat count does nothing at /home/shared/mirdeep2/bin/miRDeep2_core_algorithm.pl line 1458, line 8699667. Negative repeat count does nothing at /home/shared/mirdeep2/bin/miRDeep2_core_algorithm.pl line 1458, line 8775713. Negative repeat count does nothing at /home/shared/mirdeep2/bin/miRDeep2_core_algorithm.pl line 1458, line 8796160. Negative repeat count does nothing at /home/shared/mirdeep2/bin/miRDeep2_core_algorithm.pl line 1458, line 8871458. Negative repeat count does nothing at /home/shared/mirdeep2/bin/miRDeep2_core_algorithm.pl line 1458, line 8961653. Negative repeat count does nothing at /home/shared/mirdeep2/bin/miRDeep2_core_algorithm.pl line 1458, line 9015773. Negative repeat count does nothing at /home/shared/mirdeep2/bin/miRDeep2_core_algorithm.pl line 1458, line 9042367. Negative repeat count does nothing at /home/shared/mirdeep2/bin/miRDeep2_core_algorithm.pl line 1458, line 9218613. Negative repeat count does nothing at /home/shared/mirdeep2/bin/miRDeep2_core_algorithm.pl line 1458, line 9266369. Negative repeat count does nothing at /home/shared/mirdeep2/bin/miRDeep2_core_algorithm.pl line 1458, line 9333810. ended: 20:53:08 total:0h:4m:17s #running permuted controls started: 20:53:08 echo 'miRDeep2_core_algorithm.pl mirdeep_runs/run_22_04_2024_t_15_27_22/tmp/signature.arf mirdeep_runs/run_22_04_2024_t_15_27_22/tmp/precursors.str -s mirdeep_runs/run_22_04_2024_t_15_27_22/tmp/cnidarian-mirbase-mature-v22.1-no_spaces.fa -v -50 -y mirdeep_runs/run_22_04_2024_t_15_27_22/tmp/precursors_for_randfold.rand > mirdeep_runs/run_22_04_2024_t_15_27_22/output.mrd' > mirdeep_runs/run_22_04_2024_t_15_27_22/tmp/command_line perform_controls.pl mirdeep_runs/run_22_04_2024_t_15_27_22/tmp/command_line mirdeep_runs/run_22_04_2024_t_15_27_22/tmp/precursors.str 100 -a > mirdeep_runs/run_22_04_2024_t_15_27_22/tmp/output_permuted.mrd 2>>error_22_04_2024_t_15_27_22.log ended: 4:19:48 total:7h:26m:40s #doing survey of accuracy survey.pl mirdeep_runs/run_22_04_2024_t_15_27_22/output.mrd -a mirdeep_runs/run_22_04_2024_t_15_27_22/tmp/output_permuted.mrd -d 1 > mirdeep_runs/run_22_04_2024_t_15_27_22/survey.csv started: 4:19:48 ended: 4:20:34 total:0h:0m:46s #producing graphic results started: 4:20:34 make_html.pl -f mirdeep_runs/run_22_04_2024_t_15_27_22/output.mrd -p mirdeep_runs/run_22_04_2024_t_15_27_22/tmp/precursors.coords -v 0 -s mirdeep_runs/run_22_04_2024_t_15_27_22/survey.csv -c -e -r /home/shared/mirdeep2/bin//../Rfam_for_miRDeep.fa -y 22_04_2024_t_15_27_22 -o -t S.purpuratus -V 2.0.1.2 parsing input file finished checking Rfam for hits to precursors Build bowtie index of Rfam entries Mapping mature,star and loop sequences against index # reads processed: 147578 # reads with at least one reported alignment: 643 (0.44%) # reads that failed to align: 146935 (99.56%) Reported 2651 alignments creating PDF files creating pdf for Pocillopora_meandrina_HIv1___Sc0000000_60202 finished creating pdf for Pocillopora_meandrina_HIv1___Sc0000017_655645 finished creating pdf for Pocillopora_meandrina_HIv1___Sc0000005_273871 finished creating pdf for Pocillopora_meandrina_HIv1___xfSc0000017_985353 finished creating pdf for Pocillopora_meandrina_HIv1___Sc0000009_442963 finished creating pdf for Pocillopora_meandrina_HIv1___Sc0000002_166394 finished creating pdf for Pocillopora_meandrina_HIv1___Sc0000016_620672 finished creating pdf for Pocillopora_meandrina_HIv1___Sc0000016_620701 finished creating pdf for Pocillopora_meandrina_HIv1___Sc0000016_620687 finished creating pdf for Pocillopora_meandrina_HIv1___Sc0000016_620682 finished creating pdf for Pocillopora_meandrina_HIv1___Sc0000016_620690 finished creating pdf for Pocillopora_meandrina_HIv1___Sc0000016_620680 finished creating pdf for Pocillopora_meandrina_HIv1___Sc0000005_286150 finished creating pdf for Pocillopora_meandrina_HIv1___Sc0000044_970520 finished creating pdf for Pocillopora_meandrina_HIv1___Sc0000016_620719 finished creating pdf for Pocillopora_meandrina_HIv1___Sc0000016_620703 finished 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finished creating pdf for Pocillopora_meandrina_HIv1___Sc0000015_594492 finished creating pdf for Pocillopora_meandrina_HIv1___Sc0000007_375788 finished creating pdf for Pocillopora_meandrina_HIv1___Sc0000015_594457 finished creating pdf for Pocillopora_meandrina_HIv1___Sc0000007_374356 finished creating pdf for Pocillopora_meandrina_HIv1___Sc0000016_620705 finished creating pdf for Pocillopora_meandrina_HIv1___Sc0000034_898278 finished creating pdf for Pocillopora_meandrina_HIv1___Sc0000013_535060 finished creating pdf for Pocillopora_meandrina_HIv1___Sc0000001_125099 finished creating pdf for Pocillopora_meandrina_HIv1___Sc0000022_749847 finished creating pdf for Pocillopora_meandrina_HIv1___Sc0000004_249269 finished creating pdf for Pocillopora_meandrina_HIv1___Sc0000016_619191 finished creating pdf for Pocillopora_meandrina_HIv1___Sc0000002_186979 finished creating pdf for Pocillopora_meandrina_HIv1___Sc0000008_398599 finished creating pdf for 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for Pocillopora_meandrina_HIv1___Sc0000002_136101 finished creating pdf for Pocillopora_meandrina_HIv1___Sc0000005_288536 finished creating pdf for Pocillopora_meandrina_HIv1___Sc0000023_759623 finished creating pdf for Pocillopora_meandrina_HIv1___Sc0000000_48572 finished creating pdf for Pocillopora_meandrina_HIv1___Sc0000009_439231 finished creating pdf for Pocillopora_meandrina_HIv1___Sc0000013_553197 finished creating pdf for Pocillopora_meandrina_HIv1___Sc0000012_527217 finished creating pdf for Pocillopora_meandrina_HIv1___Sc0000030_853295 finished creating pdf for Pocillopora_meandrina_HIv1___Sc0000035_906730 finished creating pdf for Pocillopora_meandrina_HIv1___Sc0000016_623420 finished creating pdf for Pocillopora_meandrina_HIv1___Sc0000025_785598 finished creating pdf for Pocillopora_meandrina_HIv1___Sc0000002_160633 finished creating pdf for Pocillopora_meandrina_HIv1___Sc0000015_587161 finished creating pdf for Pocillopora_meandrina_HIv1___Sc0000005_284579 finished creating pdf for Pocillopora_meandrina_HIv1___Sc0000015_600794 finished creating pdf for Pocillopora_meandrina_HIv1___Sc0000029_841432 finished creating pdf for Pocillopora_meandrina_HIv1___Sc0000003_214357 finished creating pdf for Pocillopora_meandrina_HIv1___Sc0000001_70389 finished creating pdf for Pocillopora_meandrina_HIv1___Sc0000003_198374 finished creating pdf for Pocillopora_meandrina_HIv1___Sc0000000_26505 finished creating pdf for Pocillopora_meandrina_HIv1___Sc0000013_550622 finished creating pdf for Pocillopora_meandrina_HIv1___Sc0000020_723291 finished creating pdf for Pocillopora_meandrina_HIv1___Sc0000004_248151 finished creating pdf for Pocillopora_meandrina_HIv1___Sc0000003_215190 finished creating pdf for Pocillopora_meandrina_HIv1___Sc0000028_828074 finished creating pdf for Pocillopora_meandrina_HIv1___Sc0000005_282102 finished creating pdf for Pocillopora_meandrina_HIv1___Sc0000018_682506 finished creating pdf for Pocillopora_meandrina_HIv1___Sc0000066_979507 finished creating pdf for Pocillopora_meandrina_HIv1___Sc0000034_904185 finished creating pdf for Pocillopora_meandrina_HIv1___Sc0000021_727753 finished creating pdf for Pocillopora_meandrina_HIv1___Sc0000035_909184 finished creating pdf for Pocillopora_meandrina_HIv1___Sc0000031_875073 finished creating pdf for Pocillopora_meandrina_HIv1___Sc0000000_32109 finished creating pdf for Pocillopora_meandrina_HIv1___Sc0000032_879562 finished creating pdf for Pocillopora_meandrina_HIv1___Sc0000014_557863 finished creating pdf for Pocillopora_meandrina_HIv1___Sc0000003_216579 finished creating pdf for Pocillopora_meandrina_HIv1___Sc0000005_306484 finished creating pdf for Pocillopora_meandrina_HIv1___Sc0000011_487876 finished creating pdf for Pocillopora_meandrina_HIv1___Sc0000011_478873 finished creating pdf for Pocillopora_meandrina_HIv1___Sc0000044_968728 finished creating pdf for Pocillopora_meandrina_HIv1___Sc0000003_192441 finished creating pdf for Pocillopora_meandrina_HIv1___Sc0000009_437431 finished creating pdf for Pocillopora_meandrina_HIv1___Sc0000010_454421 finished creating pdf for Pocillopora_meandrina_HIv1___Sc0000018_684325 finished creating pdf for Pocillopora_meandrina_HIv1___Sc0000020_719429 finished creating pdf for Pocillopora_meandrina_HIv1___Sc0000007_382264 finished creating pdf for Pocillopora_meandrina_HIv1___Sc0000017_641779 finished creating pdf for Pocillopora_meandrina_HIv1___Sc0000031_876599 finished creating pdf for Pocillopora_meandrina_HIv1___Sc0000044_970370 finished creating pdf for Pocillopora_meandrina_HIv1___Sc0000022_748892 finished creating pdf for Pocillopora_meandrina_HIv1___Sc0000001_121264 finished creating pdf for Pocillopora_meandrina_HIv1___Sc0000019_699913 finished creating pdf for Pocillopora_meandrina_HIv1___Sc0000022_755637 finished creating pdf for Pocillopora_meandrina_HIv1___Sc0000019_688587 finished creating pdf for Pocillopora_meandrina_HIv1___Sc0000006_311829 finished creating pdf for Pocillopora_meandrina_HIv1___Sc0000036_919526 finished creating pdf for Pocillopora_meandrina_HIv1___Sc0000007_384472 finished creating pdf for Pocillopora_meandrina_HIv1___Sc0000000_15719 finished creating pdf for Pocillopora_meandrina_HIv1___Sc0000007_382579 finished creating pdf for Pocillopora_meandrina_HIv1___Sc0000002_180523 finished creating pdf for Pocillopora_meandrina_HIv1___Sc0000001_114533 finished creating pdf for Pocillopora_meandrina_HIv1___Sc0000014_575110 finished creating pdf for Pocillopora_meandrina_HIv1___Sc0000006_341817 finished creating pdf for Pocillopora_meandrina_HIv1___Sc0000033_892307 finished creating pdf for Pocillopora_meandrina_HIv1___Sc0000007_359182 finished creating pdf for Pocillopora_meandrina_HIv1___Sc0000009_437008 finished creating pdf for Pocillopora_meandrina_HIv1___Sc0000018_674794 finished creating pdf for Pocillopora_meandrina_HIv1___Sc0000008_419876 finished creating pdf for Pocillopora_meandrina_HIv1___Sc0000003_202350 finished creating pdf for Pocillopora_meandrina_HIv1___Sc0000005_282887 finished creating pdf for Pocillopora_meandrina_HIv1___Sc0000000_54565 finished creating pdf for Pocillopora_meandrina_HIv1___Sc0000018_675586 finished creating pdf for Pocillopora_meandrina_HIv1___Sc0000008_394620 finished creating pdf for Pocillopora_meandrina_HIv1___Sc0000005_282725 finished creating pdf for Pocillopora_meandrina_HIv1___Sc0000002_163438 finished creating pdf for Pocillopora_meandrina_HIv1___Sc0000005_282803 finished creating pdf for Pocillopora_meandrina_HIv1___Sc0000021_734176 finished creating pdf for Pocillopora_meandrina_HIv1___Sc0000005_282643 finished creating pdf for Pocillopora_meandrina_HIv1___Sc0000014_571501 finished creating pdf for Pocillopora_meandrina_HIv1___Sc0000000_34275 finished creating pdf for Pocillopora_meandrina_HIv1___Sc0000019_699499 finished creating pdf for Pocillopora_meandrina_HIv1___Sc0000014_569153 finished creating pdf for Pocillopora_meandrina_HIv1___Sc0000005_303290 finished creating pdf for Pocillopora_meandrina_HIv1___Sc0000000_20147 finished creating pdf for Pocillopora_meandrina_HIv1___Sc0000000_58881 finished creating pdf for Pocillopora_meandrina_HIv1___Sc0000004_258795 finished creating pdf for Pocillopora_meandrina_HIv1___Sc0000014_569041 finished creating pdf for Pocillopora_meandrina_HIv1___Sc0000038_934877 finished creating pdf for Pocillopora_meandrina_HIv1___Sc0000030_856433 finished creating pdf for Pocillopora_meandrina_HIv1___Sc0000028_830658 finished creating pdf for Pocillopora_meandrina_HIv1___Sc0000001_83041 finished creating pdf for Pocillopora_meandrina_HIv1___Sc0000038_935159 finished creating pdf for Pocillopora_meandrina_HIv1___Sc0000004_257977 finished creating pdf for Pocillopora_meandrina_HIv1___Sc0000002_156727 finished creating pdf for Pocillopora_meandrina_HIv1___Sc0000007_365352 finished creating pdf for Pocillopora_meandrina_HIv1___Sc0000004_259839 finished creating pdf for Pocillopora_meandrina_HIv1___Sc0000004_267666 finished creating pdf for Pocillopora_meandrina_HIv1___Sc0000003_210738 finished creating pdf for Pocillopora_meandrina_HIv1___Sc0000011_486504 finished creating pdf for Pocillopora_meandrina_HIv1___Sc0000016_632187 finished creating pdf for Pocillopora_meandrina_HIv1___Sc0000005_291802 finished creating pdf for Pocillopora_meandrina_HIv1___Sc0000021_741745 finished creating pdf for Pocillopora_meandrina_HIv1___Sc0000017_642613 finished creating pdf for Pocillopora_meandrina_HIv1___Sc0000014_556022 finished creating pdf for Pocillopora_meandrina_HIv1___Sc0000045_974181 finished creating pdf for Pocillopora_meandrina_HIv1___Sc0000017_641207 finished creating pdf for Pocillopora_meandrina_HIv1___Sc0000029_849430 finished creating pdf for Pocillopora_meandrina_HIv1___Sc0000001_90046 finished creating pdf for Pocillopora_meandrina_HIv1___Sc0000022_755594 finished creating pdf for Pocillopora_meandrina_HIv1___Sc0000009_427195 finished creating pdf for Pocillopora_meandrina_HIv1___Sc0000006_339349 finished creating pdf for Pocillopora_meandrina_HIv1___Sc0000002_149528 finished creating pdf for Pocillopora_meandrina_HIv1___Sc0000006_346569 finished creating pdf for Pocillopora_meandrina_HIv1___Sc0000007_379410 finished creating pdf for Pocillopora_meandrina_HIv1___Sc0000014_556254 finished creating pdf for Pocillopora_meandrina_HIv1___Sc0000024_769972 finished creating pdf for Pocillopora_meandrina_HIv1___Sc0000020_722817 finished creating pdf for Pocillopora_meandrina_HIv1___Sc0000006_311273 finished creating pdf for Pocillopora_meandrina_HIv1___Sc0000024_771594 finished creating pdf for Pocillopora_meandrina_HIv1___Sc0000005_303826 finished creating pdf for Pocillopora_meandrina_HIv1___Sc0000010_450833 finished creating pdf for Pocillopora_meandrina_HIv1___Sc0000012_529706 finished creating pdf for Pocillopora_meandrina_HIv1___Sc0000016_635370 finished creating pdf for Pocillopora_meandrina_HIv1___Sc0000006_311879 finished creating pdf for Pocillopora_meandrina_HIv1___Sc0000038_935160 finished creating pdf for Pocillopora_meandrina_HIv1___Sc0000024_773634 finished creating pdf for Pocillopora_meandrina_HIv1___Sc0000001_71695 finished creating pdf for Pocillopora_meandrina_HIv1___Sc0000008_413462 finished creating pdf for Pocillopora_meandrina_HIv1___Sc0000011_494567 finished creating pdf for Pocillopora_meandrina_HIv1___Sc0000020_717366 finished creating pdf for Pocillopora_meandrina_HIv1___Sc0000018_685582 finished creating pdf for Pocillopora_meandrina_HIv1___Sc0000003_206158 finished creating pdf for Pocillopora_meandrina_HIv1___Sc0000004_265312 finished creating pdf for Pocillopora_meandrina_HIv1___Sc0000000_46878 finished creating pdf for Pocillopora_meandrina_HIv1___Sc0000004_261503 finished creating pdf for Pocillopora_meandrina_HIv1___Sc0000002_133989 finished creating pdf for Pocillopora_meandrina_HIv1___Sc0000016_621672 finished creating pdf for Pocillopora_meandrina_HIv1___Sc0000006_315128 finished creating pdf for Pocillopora_meandrina_HIv1___Sc0000016_612918 finished creating pdf for Pocillopora_meandrina_HIv1___Sc0000011_489092 finished creating pdf for Pocillopora_meandrina_HIv1___Sc0000000_441 finished creating pdf for Pocillopora_meandrina_HIv1___Sc0000017_641596 finished creating pdf for Pocillopora_meandrina_HIv1___Sc0000022_747530 finished creating pdf for Pocillopora_meandrina_HIv1___Sc0000001_76931 finished creating pdf for Pocillopora_meandrina_HIv1___Sc0000017_644785 finished creating pdf for Pocillopora_meandrina_HIv1___Sc0000000_59992 finished creating pdf for Pocillopora_meandrina_HIv1___Sc0000018_668248 finished creating pdf for Pocillopora_meandrina_HIv1___Sc0000027_814217 finished creating pdf for Pocillopora_meandrina_HIv1___Sc0000022_744026 finished creating pdf for Pocillopora_meandrina_HIv1___Sc0000021_726457 finished creating pdf for Pocillopora_meandrina_HIv1___Sc0000007_381736 finished creating pdf for Pocillopora_meandrina_HIv1___Sc0000045_974959 finished creating pdf for Pocillopora_meandrina_HIv1___Sc0000001_121117 finished creating pdf for Pocillopora_meandrina_HIv1___Sc0000005_309787 finished creating pdf for Pocillopora_meandrina_HIv1___Sc0000006_311605 finished creating pdf for Pocillopora_meandrina_HIv1___Sc0000002_156559 finished creating pdf for Pocillopora_meandrina_HIv1___Sc0000029_841496 finished creating pdf for Pocillopora_meandrina_HIv1___Sc0000007_367653 finished creating pdf for Pocillopora_meandrina_HIv1___Sc0000005_289724 finished creating pdf for Pocillopora_meandrina_HIv1___Sc0000022_748302 finished creating pdf for Pocillopora_meandrina_HIv1___Sc0000007_382004 finished creating pdf for Pocillopora_meandrina_HIv1___Sc0000003_215942 finished creating pdf for Pocillopora_meandrina_HIv1___Sc0000014_563762 finished creating pdf for Pocillopora_meandrina_HIv1___Sc0000002_156455 finished creating pdf for Pocillopora_meandrina_HIv1___Sc0000014_575293 finished creating pdf for Pocillopora_meandrina_HIv1___Sc0000014_563757 finished creating pdf for Pocillopora_meandrina_HIv1___Sc0000000_24086 finished creating pdf for Pocillopora_meandrina_HIv1___Sc0000003_195739 finished creating pdf for Pocillopora_meandrina_HIv1___Sc0000008_413428 finished creating pdf for Pocillopora_meandrina_HIv1___Sc0000018_684700 finished creating pdf for Pocillopora_meandrina_HIv1___Sc0000031_877305 finished creating pdf for Pocillopora_meandrina_HIv1___Sc0000016_619293 finished creating pdf for Pocillopora_meandrina_HIv1___Sc0000001_89591 finished creating pdf for Pocillopora_meandrina_HIv1___Sc0000003_205298 finished creating pdf for Pocillopora_meandrina_HIv1___Sc0000002_186878 finished creating pdf for Pocillopora_meandrina_HIv1___Sc0000033_891463 finished creating pdf for Pocillopora_meandrina_HIv1___Sc0000002_135259 finished creating pdf for Pocillopora_meandrina_HIv1___Sc0000004_255860 finished creating pdf for Pocillopora_meandrina_HIv1___Sc0000029_844153 finished creating pdf for Pocillopora_meandrina_HIv1___Sc0000023_767501 finished creating pdf for Pocillopora_meandrina_HIv1___Sc0000000_7869 finished creating pdf for Pocillopora_meandrina_HIv1___Sc0000037_925439 finished creating pdf for Pocillopora_meandrina_HIv1___Sc0000045_974185 finished creating pdf for Pocillopora_meandrina_HIv1___Sc0000013_545565 finished creating pdf for Pocillopora_meandrina_HIv1___Sc0000012_515931 finished creating pdf for Pocillopora_meandrina_HIv1___Sc0000002_155432 finished creating pdf for Pocillopora_meandrina_HIv1___Sc0000008_404005 finished creating pdf for Pocillopora_meandrina_HIv1___Sc0000003_240528 finished creating pdf for Pocillopora_meandrina_HIv1___Sc0000015_593290 finished creating pdf for Pocillopora_meandrina_HIv1___Sc0000002_186454 finished creating pdf for Pocillopora_meandrina_HIv1___Sc0000010_468765 finished creating pdf for Pocillopora_meandrina_HIv1___Sc0000038_932795 finished creating pdf for Pocillopora_meandrina_HIv1___Sc0000010_468769 finished creating pdf for Pocillopora_meandrina_HIv1___Sc0000011_494091 finished creating pdf for Pocillopora_meandrina_HIv1___Sc0000020_718728 finished creating pdf for Pocillopora_meandrina_HIv1___Sc0000025_785779 finished creating pdf for Pocillopora_meandrina_HIv1___Sc0000000_5169 finished creating pdf for Pocillopora_meandrina_HIv1___Sc0000021_725675 finished creating pdf for Pocillopora_meandrina_HIv1___Sc0000011_486470 finished creating pdf for Pocillopora_meandrina_HIv1___Sc0000038_931647 finished creating pdf for Pocillopora_meandrina_HIv1___Sc0000001_65693 finished creating pdf for Pocillopora_meandrina_HIv1___Sc0000019_693991 finished creating pdf for Pocillopora_meandrina_HIv1___Sc0000001_103547 finished creating pdf for Pocillopora_meandrina_HIv1___Sc0000025_778165 finished creating pdf for Pocillopora_meandrina_HIv1___Sc0000032_883039 finished creating pdf for Pocillopora_meandrina_HIv1___Sc0000026_804680 finished creating pdf for Pocillopora_meandrina_HIv1___Sc0000021_739830 finished creating pdf for Pocillopora_meandrina_HIv1___Sc0000001_114449 finished creating pdf for Pocillopora_meandrina_HIv1___Sc0000029_849476 finished creating pdf for Pocillopora_meandrina_HIv1___Sc0000029_849380 finished creating pdf for Pocillopora_meandrina_HIv1___Sc0000012_534606 finished creating pdf for Pocillopora_meandrina_HIv1___Sc0000022_748695 finished creating pdf for Pocillopora_meandrina_HIv1___Sc0000029_849280 finished creating pdf for Pocillopora_meandrina_HIv1___Sc0000026_791989 finished creating pdf for Pocillopora_meandrina_HIv1___Sc0000010_445176 finished creating pdf for Pocillopora_meandrina_HIv1___Sc0000044_968750 finished creating pdf for Pocillopora_meandrina_HIv1___Sc0000003_222600 finished creating pdf for Pocillopora_meandrina_HIv1___Sc0000023_757362 finished creating pdf for Pocillopora_meandrina_HIv1___Sc0000002_130272 finished creating pdf for Pocillopora_meandrina_HIv1___Sc0000027_818449 finished creating pdf for Pocillopora_meandrina_HIv1___Sc0000027_812479 finished creating pdf for Pocillopora_meandrina_HIv1___Sc0000016_615931 finished creating pdf for Pocillopora_meandrina_HIv1___xfSc0000002_982263 finished creating pdf for Pocillopora_meandrina_HIv1___Sc0000069_979698 finished creating pdf for Pocillopora_meandrina_HIv1___Sc0000025_782791 finished creating pdf for Pocillopora_meandrina_HIv1___Sc0000005_305522 finished creating pdf for Pocillopora_meandrina_HIv1___Sc0000010_454181 finished creating pdf for Pocillopora_meandrina_HIv1___Sc0000021_742990 finished creating pdf for Pocillopora_meandrina_HIv1___Sc0000009_429766 finished creating pdf for Pocillopora_meandrina_HIv1___Sc0000016_618593 finished creating pdf for Pocillopora_meandrina_HIv1___Sc0000015_602027 finished creating pdf for Pocillopora_meandrina_HIv1___Sc0000011_479746 finished creating pdf for Pocillopora_meandrina_HIv1___Sc0000023_765176 finished creating pdf for Pocillopora_meandrina_HIv1___Sc0000042_963854 finished creating pdf for Pocillopora_meandrina_HIv1___Sc0000016_620698 finished creating pdf for Pocillopora_meandrina_HIv1___Sc0000017_646740 finished creating pdf for Pocillopora_meandrina_HIv1___Sc0000008_404271 finished creating pdf for Pocillopora_meandrina_HIv1___Sc0000034_905095 finished creating pdf for Pocillopora_meandrina_HIv1___Sc0000026_793118 finished creating pdf for Pocillopora_meandrina_HIv1___Sc0000002_141356 finished creating pdf for Pocillopora_meandrina_HIv1___Sc0000020_716817 finished creating pdf for Pocillopora_meandrina_HIv1___Sc0000002_140765 finished creating pdf for Pocillopora_meandrina_HIv1___Sc0000003_223074 finished creating pdf for Pocillopora_meandrina_HIv1___Sc0000003_202949 finished creating pdf for Pocillopora_meandrina_HIv1___Sc0000000_22141 finished creating pdf for Pocillopora_meandrina_HIv1___Sc0000000_22509 finished creating pdf for Pocillopora_meandrina_HIv1___Sc0000000_21949 finished creating pdf for Pocillopora_meandrina_HIv1___Sc0000001_120993 finished creating pdf for Pocillopora_meandrina_HIv1___Sc0000000_22091 finished creating pdf for Pocillopora_meandrina_HIv1___Sc0000000_22459 finished creating pdf for Pocillopora_meandrina_HIv1___Sc0000015_606777 finished creating pdf for Pocillopora_meandrina_HIv1___Sc0000005_290451 finished creating pdf for Pocillopora_meandrina_HIv1___Sc0000000_22169 finished creating pdf for Pocillopora_meandrina_HIv1___Sc0000020_723261 finished creating pdf for Pocillopora_meandrina_HIv1___Sc0000001_110965 finished creating pdf for Pocillopora_meandrina_HIv1___Sc0000008_410773 finished creating pdf for Pocillopora_meandrina_HIv1___Sc0000007_387701 finished creating pdf for Pocillopora_meandrina_HIv1___Sc0000032_889461 finished creating pdf for Pocillopora_meandrina_HIv1___Sc0000035_907624 finished creating pdf for Pocillopora_meandrina_HIv1___Sc0000004_266588 finished creating pdf for Pocillopora_meandrina_HIv1___Sc0000004_271094 finished creating pdf for Pocillopora_meandrina_HIv1___Sc0000007_389672 finished creating pdf for Pocillopora_meandrina_HIv1___Sc0000010_445024 finished creating pdf for Pocillopora_meandrina_HIv1___Sc0000028_835878 finished creating pdf for Pocillopora_meandrina_HIv1___Sc0000018_677916 finished creating pdf for Pocillopora_meandrina_HIv1___Sc0000018_667466 finished creating pdf for Pocillopora_meandrina_HIv1___Sc0000001_128138 finished creating pdf for Pocillopora_meandrina_HIv1___Sc0000001_86025 finished creating pdf for Pocillopora_meandrina_HIv1___Sc0000013_536735 finished creating pdf for Pocillopora_meandrina_HIv1___Sc0000014_581841 finished creating pdf for Pocillopora_meandrina_HIv1___Sc0000026_799257 finished creating pdf for Pocillopora_meandrina_HIv1___Sc0000000_25962 finished creating pdf for Pocillopora_meandrina_HIv1___Sc0000014_571207 finished creating pdf for Pocillopora_meandrina_HIv1___Sc0000013_535001 finished creating pdf for Pocillopora_meandrina_HIv1___Sc0000024_771735 finished creating 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creating pdf for Pocillopora_meandrina_HIv1___Sc0000016_615100 finished creating pdf for Pocillopora_meandrina_HIv1___Sc0000031_875798 finished creating pdf for Pocillopora_meandrina_HIv1___Sc0000006_350889 finished creating pdf for Pocillopora_meandrina_HIv1___Sc0000002_139398 finished creating pdf for Pocillopora_meandrina_HIv1___Sc0000001_121059 finished creating pdf for Pocillopora_meandrina_HIv1___Sc0000003_208506 finished creating pdf for Pocillopora_meandrina_HIv1___Sc0000016_635859 finished creating pdf for Pocillopora_meandrina_HIv1___Sc0000015_600889 finished creating pdf for Pocillopora_meandrina_HIv1___Sc0000028_827023 finished creating pdf for Pocillopora_meandrina_HIv1___Sc0000000_52368 finished creating pdf for Pocillopora_meandrina_HIv1___Sc0000041_958359 finished creating pdf for Pocillopora_meandrina_HIv1___Sc0000001_74050 finished creating pdf for Pocillopora_meandrina_HIv1___Sc0000001_87192 finished creating pdf for Pocillopora_meandrina_HIv1___Sc0000038_938520 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pdf for Pocillopora_meandrina_HIv1___Sc0000024_775093 finished creating pdf for Pocillopora_meandrina_HIv1___Sc0000007_363881 finished creating pdf for Pocillopora_meandrina_HIv1___Sc0000025_785412 finished creating pdf for Pocillopora_meandrina_HIv1___Sc0000022_747819 finished creating pdf for Pocillopora_meandrina_HIv1___Sc0000024_769060 finished creating pdf for Pocillopora_meandrina_HIv1___Sc0000001_103819 finished creating pdf for Pocillopora_meandrina_HIv1___Sc0000010_447407 finished creating pdf for Pocillopora_meandrina_HIv1___Sc0000025_789212 finished creating pdf for Pocillopora_meandrina_HIv1___Sc0000025_778679 finished creating pdf for Pocillopora_meandrina_HIv1___Sc0000007_388214 finished creating pdf for Pocillopora_meandrina_HIv1___Sc0000028_831227 finished creating pdf for Pocillopora_meandrina_HIv1___Sc0000022_747789 finished creating pdf for Pocillopora_meandrina_HIv1___Sc0000001_87331 finished creating pdf for Pocillopora_meandrina_HIv1___Sc0000020_722246 finished 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pdf for Pocillopora_meandrina_HIv1___Sc0000019_699230 finished creating pdf for Pocillopora_meandrina_HIv1___Sc0000001_117501 finished creating pdf for Pocillopora_meandrina_HIv1___Sc0000008_403025 finished creating pdf for Pocillopora_meandrina_HIv1___Sc0000001_79250 finished creating pdf for Pocillopora_meandrina_HIv1___Sc0000008_416360 finished creating pdf for Pocillopora_meandrina_HIv1___Sc0000001_98188 finished creating pdf for Pocillopora_meandrina_HIv1___Sc0000000_52080 finished creating pdf for Pocillopora_meandrina_HIv1___Sc0000025_787969 finished creating pdf for Pocillopora_meandrina_HIv1___Sc0000016_619186 finished creating pdf for Pocillopora_meandrina_HIv1___Sc0000004_262606 finished creating pdf for Pocillopora_meandrina_HIv1___Sc0000004_266015 finished creating pdf for Pocillopora_meandrina_HIv1___Sc0000000_20153 finished creating pdf for Pocillopora_meandrina_HIv1___Sc0000005_307856 finished creating pdf for Pocillopora_meandrina_HIv1___Sc0000002_169293 finished 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finished creating pdf for Pocillopora_meandrina_HIv1___Sc0000011_498632 finished creating pdf for Pocillopora_meandrina_HIv1___Sc0000009_437823 finished creating pdf for Pocillopora_meandrina_HIv1___Sc0000017_655767 finished creating pdf for Pocillopora_meandrina_HIv1___Sc0000010_472145 finished creating pdf for Pocillopora_meandrina_HIv1___Sc0000004_258970 finished creating pdf for Pocillopora_meandrina_HIv1___Sc0000023_764916 finished creating pdf for Pocillopora_meandrina_HIv1___Sc0000018_686650 finished creating pdf for Pocillopora_meandrina_HIv1___Sc0000014_572243 finished creating pdf for Pocillopora_meandrina_HIv1___Sc0000031_872585 finished creating pdf for Pocillopora_meandrina_HIv1___Sc0000015_603392 finished creating pdf for Pocillopora_meandrina_HIv1___Sc0000007_387412 finished creating pdf for Pocillopora_meandrina_HIv1___Sc0000015_586668 finished creating pdf for Pocillopora_meandrina_HIv1___Sc0000021_734163 finished creating pdf for 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pdf for Pocillopora_meandrina_HIv1___Sc0000001_78644 finished creating pdf for Pocillopora_meandrina_HIv1___Sc0000014_581793 finished creating pdf for Pocillopora_meandrina_HIv1___Sc0000017_640644 finished creating pdf for Pocillopora_meandrina_HIv1___Sc0000018_671687 finished creating pdf for Pocillopora_meandrina_HIv1___Sc0000041_953045 finished creating pdf for Pocillopora_meandrina_HIv1___Sc0000040_950502 finished creating pdf for Pocillopora_meandrina_HIv1___Sc0000002_170036 finished ended: 4:31:49 total:0h:11m:15s fasta and bed files have been created in subfolder mirna_results_22_04_2024_t_15_27_22 rmtree(mirdeep_runs/run_22_04_2024_t_15_27_22/tmp) miRDeep runtime: started: 15:27:22 ended: 4:31:50 total:37h:4m:28s