Genome: /home/shared/8TB_HDD_01/sam/gitrepos/deep-dive/D-Apul/data/Amil/ncbi_dataset/data/GCF_013753865.1/GCF_013753865.1_Amil_v2.1_genomic.fa
Alignments: /home/shared/8TB_HDD_01/sam/gitrepos/deep-dive/D-Apul/output/13.2.1-Apul-sRNAseq-ShortStack-31bp-fastp-merged-cnidarian_miRBase/ShortStack_out/merged_alignments.bam
Location: NC_058077.1:2892656-2892749 plus
Post-script file name: /home/shared/8TB_HDD_01/sam/gitrepos/deep-dive/D-Apul/output/13.2.1-Apul-sRNAseq-ShortStack-31bp-fastp-merged-cnidarian_miRBase/ShortStack_out/strucVis/Cluster_9460.ps
Locus Name: Cluster_9460
GGCAUCUGUGAACUCCAGCCUACAUGUGCUGCACUGGAACUCUUUUGCAAGACAUUCCAUGGCAGCUGUGUGCGCUAGGGCUUCACCUUUCUCA
.......(((((.((((((.((((((.(((((..(((((.((((....))))..)))))..))))))))))).))).))).)))))........ (-33.10)
.GCAUCUGUGAACUCCAGCu.......................................................................... len:19 al:1
.GCAUCUGUGAACUCCAGCC.......................................................................... len:19 al:5
.GCAUCUGUGAACUCCAGCa.......................................................................... len:19 al:2
..CAUCUGUGAACUCCAGCu.......................................................................... len:18 al:1
..CAUCUGUGAACUCCAGCC.......................................................................... len:18 al:4
...................CUACAUGUGCUGCACUGGAACUCUc.................................................. len:25 al:1
...................CUACAUGUGCUGCACUGGAACUCUUUaGCAA............................................ len:31 al:1
...................CUACAUGUGCUGCACUGGAACUCU................................................... len:24 al:1
...................CUACAUGUGCUGCACUGGAACU..................................................... len:22 al:1
....................UACAUGUGCUGCACUGGAACgCU................................................... len:23 al:7
....................UcCAUGUGCUGCACUGGAACU..................................................... len:21 al:2
....................UgCAUGUGCUGCACUGGAACUCU................................................... len:23 al:16
....................UACAUGUGCUGCACUGGuACUCU................................................... len:23 al:1
....................UACAUGUGCUGCACUGGAgCUC.................................................... len:22 al:3
....................UACAUGUGCUGuACUGGAACU..................................................... len:21 al:2
....................cACAUGUGCUGCACUGGAAC...................................................... len:20 al:1
....................UACAUGUGCUGCACUGGAACU..................................................... len:21 al:745
....................UACAUGUGCUGCACUGGAACUCUUU................................................. len:25 al:86
....................UACAUGUGCUGCACUGGAACUCUg.................................................. len:24 al:4
....................UgCAUGUGCUGCACUGGAACUCUU.................................................. len:24 al:2
....................UACAUGUGCUGCACUGGAcCUC.................................................... len:22 al:1
....................UACAUGUGCUGCACUGGAA....................................................... len:19 al:13
....................UACAUGUGCUGCACUGGgACUCU................................................... len:23 al:11
....................aACAUGUGCUGCACUGGAACUCU................................................... len:23 al:4
....................UACAUGUGCUGCACUGGAACUCUUUa................................................ len:26 al:10
....................UACAUGUGCUGCACUGGAAa...................................................... len:20 al:1
....................UAuAUGUGCUGCACUGGAACUCUU.................................................. len:24 al:1
....................UACAUGUGCUGCACUGGAgCU..................................................... len:21 al:8
....................cACAUGUGCUGCACUGGAACU..................................................... len:21 al:4
....................UACAUGUGCcGCACUGGAACU..................................................... len:21 al:1
....................UACAUGUGCUGCACUGGAAuUCU................................................... len:23 al:5
....................UACAUGUGCUGCACUGGAACUCaU.................................................. len:24 al:87
....................UACuUGUGCUGCACUGGAACUCU................................................... len:23 al:3
....................UACAUGUGCUGCuCUGGAACUCU................................................... len:23 al:1
....................UACAUGUGCUGCgCUGGAACUC.................................................... len:22 al:1
....................UACAUGUGCUGCACUGGAACUCUcU................................................. len:25 al:2
....................UACAUGUGCUGCACUGGAACUCUUUaGCA............................................. len:29 al:1
....................UACAUGcGCUGCACUGGA........................................................ len:18 al:2
....................UACAUGcGCUGCACUGGAACUCU................................................... len:23 al:16
....................UACAUGUGCUGCACUGGAACUCUc.................................................. len:24 al:47
....................UACAUGUGCUGCACUGGAACUCUaU................................................. len:25 al:71
....................UACAUGUGCUGCACUGGgACUCUU.................................................. len:24 al:1
....................UACAUGUGCUGCACUGGAAg...................................................... len:20 al:1
....................UACAUGUGCUGCACUaGAACU..................................................... len:21 al:3
....................UACAcGUGCUGCACUGGAACUCUU.................................................. len:24 al:1
....................UACAUGUGCUGCACUGGAACUgU................................................... len:23 al:1
....................UACAUGUGuUGCACUGGAACUCU................................................... len:23 al:3
....................UACAUGUGCUGCACUGGAACUCaUU................................................. len:25 al:29
....................UACAUGUGCUaCACUGGAACUCU................................................... len:23 al:4
....................UACAUGUGCUGCACUaGAACUCU................................................... len:23 al:1
....................UACAUGUGCUGCgCUGGAACUCUU.................................................. len:24 al:2
....................UACAUGUGCUGCACUGGAACUCUa.................................................. len:24 al:115
....................UACAUGUGCUGCACUGGAAuU..................................................... len:21 al:2
....................UACAUGUGCUGCACUGGAACcC.................................................... len:22 al:7
....................UcCAUGUGCUGCACUGGAACUCU................................................... len:23 al:2
....................UACAUGUGCUGCACUGGAACUaU................................................... len:23 al:2
....................UACAUGUGCUGCACUGGAg....................................................... len:19 al:1
....................UuCAUGUGCUGCACUGGAAC...................................................... len:20 al:1
....................UACAcGUGCUGCACUGGAACU..................................................... len:21 al:4
....................UACAUGaGCUGCACUGGAACUCU................................................... len:23 al:3
....................UACAUGUGCUGCACaGGAACUCU................................................... len:23 al:4
....................UACAUGUGCUGCACUaGAACUC.................................................... len:22 al:1
....................UACgUGUGCUGCACUGGAACU..................................................... len:21 al:6
....................UACAUGUGCUGCACcGGAACUCUUU................................................. len:25 al:1
....................UACAUGUGCUGCACaGGAACUCUUU................................................. len:25 al:2
....................UACAUGUGCUGCACUGGAuCUCU................................................... len:23 al:1
....................UACgUGUGCUGCACUGGAACUCUU.................................................. len:24 al:2
....................UACAUGUGCUGCACUGGAACUCU................................................... len:23 al:2505
....................UACAUGUGCUGCgCUGGAACU..................................................... len:21 al:3
....................UgCAUGUGCUGCACUGGAACU..................................................... len:21 al:6
....................UACAUGUGCUGCACUGGAcCUCU................................................... len:23 al:1
....................UACAUGUGCcGCACUGGA........................................................ len:18 al:1
....................gACAUGUGCUGCACUGGAACUCU................................................... len:23 al:6
....................UACAUGUGCUGuACUGGAACUCU................................................... len:23 al:3
....................UuCAUGUGCUGCACUGGAACUCU................................................... len:23 al:2
....................UACAUGUGCUGCACUGaAACUCUU.................................................. len:24 al:1
....................UcCAUGUGCUGCACUGGAACUCUU.................................................. len:24 al:1
....................UgCAUGUGCUGCACUGGAAC...................................................... len:20 al:1
....................UACAUGUGCUGCACUGGA........................................................ len:18 al:39
....................UACAUGUGCUGCACUGGu........................................................ len:18 al:3
....................UACAUGUGCUGCACUGGAACUC.................................................... len:22 al:193
....................UACAUGUGCUGCACUGGAACgC.................................................... len:22 al:1
....................UACAUGUGCUGCACUGGAACUCUaUU................................................ len:26 al:35
....................UACAUGUGCUGCACUGGAACUCUUUUu............................................... len:27 al:1
....................UACAUGUGCUGCACUGGAACUCUUa................................................. len:25 al:23
....................UACAUGUGCUGCACU........................................................... len:15 al:1
....................UACAUGUGCUGCACUGGAACUCc................................................... len:23 al:530
....................UACAUGUGCUGCACUGGAACgCUU.................................................. len:24 al:3
....................UACAUGUGCUGCACUGGAAu...................................................... len:20 al:11
....................UACAUGUGCUGCACUGGAACUCg................................................... len:23 al:72
....................UACAUGUGCUGCACgGGAACUCU................................................... len:23 al:2
....................UACAUGUGCUGCACUGGAACUCa................................................... len:23 al:594
....................UACAUGUGCUGCAuUGGAACUCU................................................... len:23 al:1
....................UACAUGUGCUGCACUGGAACUuU................................................... len:23 al:9
....................UACAUGUGCUGCACUuGAACU..................................................... len:21 al:1
....................UACAUGUGCUGCACUGGAAC...................................................... len:20 al:48
....................UACAUGUGCUGCACUGaAACUCU................................................... len:23 al:1
....................UACAUGUGCUGCACUGGAACUCUUaU................................................ len:26 al:17
....................UACAUGUGCUGCACUGGAACUCUUUaGCAA............................................ len:30 al:1
....................UACAUGUGCUGCACUGGAACg..................................................... len:21 al:26
....................UACAUGUGCUGCACUGGAgCUCU................................................... len:23 al:9
....................UACAUGUGCUGCACcGGAACUCUU.................................................. len:24 al:1
....................UACAUGUGCUGCACUaGAACUCUU.................................................. len:24 al:1
....................UACAUGcGCUGCACUGGAACU..................................................... len:21 al:3
....................UACAUGUGCcGCACUGGAACUC.................................................... len:22 al:1
....................UACAUGUGCUGCACUGGAACcCUU.................................................. len:24 al:3
....................UACAUaUGCUGCACUGGAACUCU................................................... len:23 al:1
....................UACAUGUaCUGCACUGGAACU..................................................... len:21 al:1
....................UACAUGUGCcGCACUGGAACUCU................................................... len:23 al:10
....................UACAUGUGCUGCgCUGGAAC...................................................... len:20 al:1
....................UACcUGUGCUGCACUGGAACU..................................................... len:21 al:1
....................UACAcGUGCUGCACUGGAACUCU................................................... len:23 al:6
....................UACAUGUGCUGCAuUGGAACU..................................................... len:21 al:1
....................UACAUGUGCUGCgCUGGA........................................................ len:18 al:1
....................UACAUGUGCUGCACUGGAc....................................................... len:19 al:1
....................UACAUGUGCUGCACUGGAACUCUUc................................................. len:25 al:10
....................UACAUGUGCcGCACUGGAA....................................................... len:19 al:1
....................UACAUGUGCUGCACUGGgACU..................................................... len:21 al:6
....................UACAUGUGCUGCACcGGAACUCU................................................... len:23 al:8
....................UACAUGUGCUGCACUGGAACaCU................................................... len:23 al:1
....................UACuUGUGCUGCACUGGAACU..................................................... len:21 al:3
....................UACAUGUGCUGCACUGGAACUCUUUaGC.............................................. len:28 al:11
....................UACAUGUGCUGuACUGGAACUCUU.................................................. len:24 al:2
....................UACAUGUGCUGCACUGGAACUCaUUU................................................ len:26 al:1
....................UACAUGUaCUGCACUGGAACUCU................................................... len:23 al:2
....................cACAUGUGCUGCACUGGAACUCU................................................... len:23 al:12
....................cACAUGUGCUGCACUGGAACUC.................................................... len:22 al:1
....................UACAUGUGCUGCAuUGGAACUC.................................................... len:22 al:1
....................UACAUGUGCUGCACUGGAACUCUUUUa............................................... len:27 al:2
....................UACAUGUGCUGCACUGGAACa..................................................... len:21 al:146
....................UACAcGUGCUGCACUGGAAC...................................................... len:20 al:1
....................gACAUGUGCUGCACUGGAACUCUU.................................................. len:24 al:1
....................UACAUGUGCUGCACUGGAACUu.................................................... len:22 al:45
....................UACAgGUGCUGCACUGGAACUCU................................................... len:23 al:2
....................UACAaGUGCUGCACUGGAACUCUUU................................................. len:25 al:1
....................UACAUGUcCUGCACUGGAACUCU................................................... len:23 al:1
....................UACAUGUGCUGCACUGGAACUCcU.................................................. len:24 al:10
....................UACAUGUGCUGCACUGGAACUa.................................................... len:22 al:24
....................UACAUGUGCUGCgCUGGAACUCU................................................... len:23 al:17
....................UAuAUGUGCUGCACUGGAACUCU................................................... len:23 al:5
....................UACAUGUGCUGCACUGGAACUCUcUU................................................ len:26 al:2
....................UuCAUGUGCUGCACUGGAACUC.................................................... len:22 al:3
....................UACAUGUGCUGCACUGGuACU..................................................... len:21 al:4
....................UACAUGUGCUGCACUGGAu....................................................... len:19 al:3
....................cACAUGUGCUGCACUGGAACUCUU.................................................. len:24 al:1
....................UACAUGUGCaGCACUGGAACUCU................................................... len:23 al:2
....................UACgUGUGCUGCACUGGAACUCU................................................... len:23 al:9
....................UACAUGUGCUGCACUGaA........................................................ len:18 al:1
....................UACAUGUGCUGCACUGGAACUCgU.................................................. len:24 al:1
....................UACAUGUGCUGCACUGGAACcCU................................................... len:23 al:41
....................UACAUGUGCUGCACUGGAgCUCUU.................................................. len:24 al:4
....................UACAUGUGCUGCACUGGAACUCUU.................................................. len:24 al:285
....................UACAUGUGCUGCACUGGAACc..................................................... len:21 al:141
....................UACAUGcGCUGCACUGGAACUCUU.................................................. len:24 al:2
....................UACAUGUGCUGCACUGGAAgU..................................................... len:21 al:1
....................UACAUGUGCUGCACUGGAACUCUUUU................................................ len:26 al:25
.....................ACAUGUGCUGCACUGGAACUCUc.................................................. len:23 al:1
.....................ACAUGUGCUGCACUGGAACUCU................................................... len:22 al:10
.....................ACAUGUGCUGCACUGGAACUCaU.................................................. len:23 al:2
.....................ACAUGUGCUGCACUGGAACc..................................................... len:20 al:1
.....................ACAUGUGCUGCACUGGAACUC.................................................... len:21 al:1
.....................ACAUGUGCUGCACUGGAACUCUU.................................................. len:23 al:1
.....................ACAUGUGCUGCACUGGAACUa.................................................... len:21 al:1
.....................ACAUGUGCUGCACUGGAACUCc................................................... len:22 al:1
.....................ACAUGUGCUGCACUGGAACcCU................................................... len:22 al:1
.......................AUGUGCUGCACUGGAACc..................................................... len:18 al:1
.......................AUGUGCUGCACUGGAACUCU................................................... len:20 al:3
.......................AUGUGCUGCACUGGAACUCUU.................................................. len:21 al:1
.......................AUGUGCaGCACUGGAACUCUUU................................................. len:22 al:1
........................UGUGCUGCACUGGAACUC.................................................... len:18 al:1
........................UGUGCUGCACUGGAACUCUU.................................................. len:20 al:5
........................UGUGCUGCACUGGAACUCa................................................... len:19 al:1
........................UGUGCUGCACUGGAACUu.................................................... len:18 al:1
........................UGUGCUGCACUGGAACcCU................................................... len:19 al:4
........................UGUGCUGCACUGGAACUCUUc................................................. len:21 al:1
........................UGUGCUGCACUGGAACUCUa.................................................. len:20 al:3
........................UGUGCUGCACUGGAACUCg................................................... len:19 al:1
........................UGUGCUGCACUGGAACUCUUUc................................................ len:22 al:2
........................UGUGCUGCACUGGAACUCU................................................... len:19 al:19
........................UGUGCUGCACUGGAACUCc................................................... len:19 al:3
.........................GUGCUGCACUGGAACUCaU.................................................. len:19 al:1
...........................................UUaGCAAGACAUUCCAUGGCAGCUGUGUGC..................... len:30 al:1
...........................................UUaGCAAGACAUUCCAUGGCAGCUGUGU....................... len:28 al:1
...........................................UUaGCAAGACAUUCCAUGGCAGCUGUGUG...................... len:29 al:1
...........................................UUaGCAAGACAUUCCAUGGCAGCUGUGUGCG.................... len:31 al:42
...................................................ACAUUCCAUGGCAGCUGUGUGCa.................... len:23 al:36
...................................................ACAUUCCAUGGCAGCUGUGUGCG.................... len:23 al:51
...................................................ACAUUCCAUGGCAGCUGUGUGu..................... len:22 al:1
...................................................ACAUUCCAUGGCAGCUGUGUGCGC................... len:24 al:3
...................................................ACAUUCCAUGGCAGCUGUGUGCGuU.................. len:25 al:1
...................................................ACAUUCCAUGGCAGCUGUGUGCGu................... len:24 al:14
...................................................gCAUUCCAUGGCAGCUGUGUGCG.................... len:23 al:1
...................................................ACAUUCCAUGGCAGCUGUGUGCGaU.................. len:25 al:3
...................................................ACuUUCCAUGGCAGCUGUGUGCG.................... len:23 al:1
...................................................ACAUUCCAUGGCAGCUGUGUGCu.................... len:23 al:12
...................................................ACAUUCCAUGGCAGCUGUGUGC..................... len:22 al:7
...................................................ACAUUCCAUGGCAGCUGUGUa...................... len:21 al:2
...................................................ACAUUCCAUGGCAGCUGUGUGCGg................... len:24 al:1
...................................................ACAUUCCAUGGCAGCUGUGUGCuC................... len:24 al:1
...................................................ACAUUCCAUGGCAGCUGUGUGCc.................... len:23 al:5
...................................................ACAUUCCAUGGCAGCUGUGUG...................... len:21 al:2
....................................................CAUUCCAUGGCAGCUGUGUGg..................... len:21 al:1
....................................................CAUUCCAUGGCgGCUGUGUGCG.................... len:22 al:1
....................................................CAUUCCAUGGCAGCUGUG........................ len:18 al:1
....................................................gAUUCCAUGGCAGCUGUGUG...................... len:20 al:1
....................................................CAUUCCAUGGCAGCUGUGUGCGa................... len:23 al:1
....................................................CgUUCCAUGGCAGCUGUGUGCG.................... len:22 al:1
....................................................CAUUCCAUGGCAGCUGUGUGCu.................... len:22 al:26
....................................................gAUUCCAUGGCAGCUGUGUGCG.................... len:22 al:2
....................................................CAUUCCAUGGCAGCUGUGUGCGC................... len:23 al:1
....................................................uAUUCCAUGGCAGCUGUGUGC..................... len:21 al:1
....................................................CAUUCCAUGGCAGCUGUGUGu..................... len:21 al:13
....................................................CAUUCCAUGGCAGCcGUGUGCG.................... len:22 al:2
....................................................CAUUCCAUGGCAGCUGUGUGa..................... len:21 al:7
....................................................CAUUCCAUGGCAGCUGUGU....................... len:19 al:3
....................................................CAUUCCAUGGCAGCUGUGUGuG.................... len:22 al:1
....................................................CAUUCCAUGGuAGCUGUGUGCG.................... len:22 al:2
....................................................CAUUCCAUGGCAGCUGUGUGCG.................... len:22 al:257
....................................................CAUUCCAUGGCAGCUGUGUGCGu................... len:23 al:17
....................................................uAUUCCAUGGCAGCUGUGUGCG.................... len:22 al:1
....................................................gAUUCCAUGGCAGCUGUGUGC..................... len:21 al:1
....................................................CAUUCCAUGcCAGCUGUGUGCG.................... len:22 al:1
....................................................CAUUCCAUGGCAGCUGUGUG...................... len:20 al:23
....................................................CAUUCCAUGGCAGCUGUGUGCa.................... len:22 al:157
....................................................CAUUCCAUGGCAGCUGUGUGgG.................... len:22 al:1
....................................................CAcUCCAUGGCAGCUGUGUGCG.................... len:22 al:2
....................................................CAUUCCAcGGCAGCUGUGUGCG.................... len:22 al:1
....................................................uAUUCCAUGGCAGCUGUGUGCGC................... len:23 al:1
....................................................CAUUCCAUGGCAGCUGUGUGC..................... len:21 al:15
....................................................CAUUCCAUGGCAGCUGUGUGCc.................... len:22 al:10
....................................................CAUUCCAUGGCAGCaGUGUGCG.................... len:22 al:1
....................................................CAUcCCAUGGCAGCUGUGUGCG.................... len:22 al:1
....................................................CAUUCCAUGGCAGCUGUGUa...................... len:20 al:3
.....................................................AUUCCAUGGCAGCUGUGUGC..................... len:20 al:16
.....................................................AUUCCAUGGCAGCUGUGUGa..................... len:20 al:1
.....................................................AUUCCAUGGCAGCUGUGUG...................... len:19 al:20
.....................................................AUUCuAUGGCAGCUGUGUGC..................... len:20 al:1
.....................................................AUUCCAUGGCAGCUGUGUGu..................... len:20 al:8
.....................................................AUUCCAUGGCAGCUGUGUGCc.................... len:21 al:15
.....................................................AUcCCAUGGCAGCUGUGUGCG.................... len:21 al:1
.....................................................AUUCCAUGGCAGCUGUGUa...................... len:19 al:6
.....................................................AUcCCAUGGCAGCUGUGUGC..................... len:20 al:1
.....................................................gUUCCAUGGCAGCUGUGUGC..................... len:20 al:1
.....................................................AUUCCAUGGCAGCUGUGUGCu.................... len:21 al:28
.....................................................AUUCCAUGGCAGCUGUGUGCGC................... len:22 al:1
.....................................................AUUCCAUGGCAGCUGUGUGCGu................... len:22 al:20
.....................................................AUUCCAUGGCAGCUGUGUGCGa................... len:22 al:1
.....................................................AUUCCAUGGCAGCUGUGU....................... len:18 al:4
.....................................................uUUCCAUGGCAGCUGUGUGCG.................... len:21 al:2
.....................................................AUUCCAUGGCAGCUGUGUGCG.................... len:21 al:103
.....................................................uUUCCAUGGCAGCUGUGUGC..................... len:20 al:1
.....................................................AUUCCgUGGCAGCUGUGUGCG.................... len:21 al:1
.....................................................AUUCCAUGGCAGuUGUGUGCG.................... len:21 al:1
.....................................................AUUCCAUGGCAGCUGUGUGCa.................... len:21 al:89
.....................................................AUUCCAUGGCAGCUGUGUGCGuU.................. len:23 al:3
.....................................................gUUCCAUGGCAGCUGUGUGCG.................... len:21 al:2
.....................................................AUUCCAUGGCAGCUaUGUGCG.................... len:21 al:1
......................................................UUCCAUGGCAGCUGUGUGCu.................... len:20 al:1
......................................................UUCCAUGGCAGCUGUGUGCGC................... len:21 al:1
......................................................UUCCAUGGCAGCUGUGUGCG.................... len:20 al:2
......................................................UUCCAUGGCAGCUGUGUGu..................... len:19 al:3
......................................................UUCCAUGGCAGCUGUGUGC..................... len:19 al:1
.......................................................UCCAUGGCAGCUGUGUGCG.................... len:19 al:1
........................................................CCAUGGCAGCUGUGUGCG.................... len:18 al:1