Genome: /home/shared/8TB_HDD_01/sam/gitrepos/deep-dive/D-Apul/data/Amil/ncbi_dataset/data/GCF_013753865.1/GCF_013753865.1_Amil_v2.1_genomic.fa
Alignments: /home/shared/8TB_HDD_01/sam/gitrepos/deep-dive/D-Apul/output/13.2.1-Apul-sRNAseq-ShortStack-31bp-fastp-merged-cnidarian_miRBase/ShortStack_out/merged_alignments.bam
Location: NC_058070.1:11598945-11599040 plus
Post-script file name: /home/shared/8TB_HDD_01/sam/gitrepos/deep-dive/D-Apul/output/13.2.1-Apul-sRNAseq-ShortStack-31bp-fastp-merged-cnidarian_miRBase/ShortStack_out/strucVis/Cluster_4247.ps
Locus Name: Cluster_4247
UUUAUCAUUACAUGUCUAGAAUUCUCAGAUUACAGUAGUUAAGUAAUUAAAUACUUAACUACUGCAAUCUGAACAUUCUAGACAUCUGUAGUUUCG
......((((((((((((((((..(((((((.(((((((((((((......))))))))))))).)))))))..))))))))))..)))))).... (-43.30)
...AUCAUUACAUGUCUAGAAU.......................................................................... len:19 al:2
.....................UUCUCAGAUUACAGUAGUUA....................................................... len:20 al:2
.....................UUCUCAGAUUACAGUAGUUAAGc.................................................... len:23 al:3
.....................UUCUCAGAUUACAGUAGUUAAGU.................................................... len:23 al:8
.....................cUCUCAGAUUACAGUAGUUAAGU.................................................... len:23 al:5
......................UCUCAGAUUgCAGUAGUUAAGU.................................................... len:22 al:165
......................UCUCAGAUUACAGUAaUUAAGU.................................................... len:22 al:25
......................UCUCAGAcUACAGUAGUUAAGUA................................................... len:23 al:12
......................UCUCAGAUUgCAGUAGUUAAGUA................................................... len:23 al:9
......................UCUCAGAUUACAaUAGUUAAGUA................................................... len:23 al:1
......................UCUCAuAUUACAGUAGUUAAGU.................................................... len:22 al:3
......................UCUCAGAUUACAGUAGUUAAGc.................................................... len:22 al:9086
......................UCUCAGAUUACAaUAGUUAAGU.................................................... len:22 al:40
......................UCUCAGAUUACAGUcGUUAAGU.................................................... len:22 al:3
......................UCUCAGgUUACAGUAGUUA....................................................... len:19 al:3
......................UCUCAGAUUACAGUAGUUAAGUAu.................................................. len:24 al:241
......................UCUCAGAUUACAGUAGUcA....................................................... len:19 al:18
......................UCUCAGAUUACcGUAGUUAAGU.................................................... len:22 al:15
......................UCUCAGAUUAuAGUAGUUA....................................................... len:19 al:2
......................cCUCAGAUUACAGUAGUUAAGU.................................................... len:22 al:341
......................UCUCAGAUUACAGUAGUaAAGUA................................................... len:23 al:2
......................UCUCAGAUUACAGcAGUUAAGU.................................................... len:22 al:101
......................UCUCAGAUUACAGUAGUUAcGU.................................................... len:22 al:7
......................UCUgAGAUUACAGUAGUUAAGU.................................................... len:22 al:3
......................UCUCAGAUUAaAGUAGUUAAGUA................................................... len:23 al:3
......................UCUCAGAcUACAGUAGUUA....................................................... len:19 al:2
......................UCUCgGAUUACAGUAGUUAAG..................................................... len:21 al:1
......................UCUCAGAUUACAGUAGUUAAGaA................................................... len:23 al:1
......................UCUCcGAUUACAGUAGUUA....................................................... len:19 al:1
......................UCUCAGAUUACAGUAGUUAAGUuA.................................................. len:24 al:1
......................UCUCAGAUUACAGUAGaU........................................................ len:18 al:2
......................UCUaAGAUUACAGUAGUUAAGU.................................................... len:22 al:6
......................UCUCAGAUUACAGUAGUUAuGU.................................................... len:22 al:31
......................UCUCAGAUUACAGUAGUUAAGg.................................................... len:22 al:556
......................UCUCAGAUUACAGUAGUgA....................................................... len:19 al:8
......................UCUCAGAUgACAGUAGUUA....................................................... len:19 al:1
......................UCUCAGAUUACAGUAGUUAA...................................................... len:20 al:9
......................UCUCAGAUUACAGUAGUaAAGU.................................................... len:22 al:13
......................UCUCAGAUUACAGUAGUUAAaU.................................................... len:22 al:63
......................UCUCAGAUUACAGUAGUUAAGUAuU................................................. len:25 al:34
......................UgUCAGAUUACAGUAGUUAAGUA................................................... len:23 al:1
......................UCcCAGAUUACAGUAGUUAAG..................................................... len:21 al:1
......................aCUCAGAUUACAGUAGUUA....................................................... len:19 al:1
......................UCcCAGAUUACAGUAGUUAAGUA................................................... len:23 al:17
......................UgUCAGAUUACAGUAGUUA....................................................... len:19 al:1
......................UCUCAGAUUACAGUAGUUcAGU.................................................... len:22 al:4
......................UCUCAGAUUACAGUAGUcAAGUA................................................... len:23 al:8
......................UCUCAGAUUACAGgAGUUAAGUA................................................... len:23 al:1
......................UCUCAGAUUACAGUgGUUAAGUA................................................... len:23 al:8
......................UuUCAGAUUACAGUAGUUA....................................................... len:19 al:3
......................UCUCAGAUUACAGUAGUUAAGa.................................................... len:22 al:807
......................UCUCAGAUUACAGUAGUUAAGcA................................................... len:23 al:176
......................UCUCAGAUUACAGUAGUaA....................................................... len:19 al:3
......................UCUCAGAUUACAGUAGUUAAGUAg.................................................. len:24 al:1
......................UCUCAGAUUACAGUAGcUAAGUA................................................... len:23 al:13
......................UCUCgGAUUACAGUAGUUAAGU.................................................... len:22 al:295
......................UCUCAGAUUACAGUAGUUAAGUu................................................... len:23 al:63
......................UCaCAGAUUACAGUAGUUAAGUA................................................... len:23 al:3
......................UCUCAGAUUACAGUAGUUc....................................................... len:19 al:6
......................UCUCAGAUUACgGUAGUUA....................................................... len:19 al:10
......................UCUCAGuUUACAGUAGUUA....................................................... len:19 al:1
......................gCUCAGAUUACAGUAGUUAAGU.................................................... len:22 al:22
......................UCUCAGAUUACAGUgGUUAAGU.................................................... len:22 al:164
......................UCUCAGAUUACAGUAGUUAAGU.................................................... len:22 al:56403
......................UCUCAGAUUACAGUAGUUAAcU.................................................... len:22 al:135
......................UCUCAGAUUACAGcAGUU........................................................ len:18 al:1
......................UCUCAGAUUACuGUAGUUAAGU.................................................... len:22 al:27
......................UCUCAGAUUACAGUAcUUAAGU.................................................... len:22 al:2
......................UaUCAGAUUACAGUAGUUAAGU.................................................... len:22 al:30
......................UCUCAaAUUACAGUAGUUA....................................................... len:19 al:1
......................UCUCAGAUUACAGUAGUUgAGUA................................................... len:23 al:6
......................UCUCAGAUUACAGUAGUUAgGUA................................................... len:23 al:15
......................UCcCAGAUUACAGUAGUUAAGU.................................................... len:22 al:271
......................UCUCuGAUUACAGUAGUUAAGUA................................................... len:23 al:6
......................UaUCAGAUUACAGUAGUUAAGUA................................................... len:23 al:3
......................UCUCAGAUUACAGUAGUU........................................................ len:18 al:117
......................UCUCAGAUUACAGUAGUUAAGgA................................................... len:23 al:8
......................UCUCAaAUUACAGUAGUUAAGUA................................................... len:23 al:1
......................UCUCAGuUUACAGUAGUUAAGU.................................................... len:22 al:5
......................UCUCAGAUUcCAGUAGUUAAGU.................................................... len:22 al:3
......................UCUCAGAUUACAGcAGUUA....................................................... len:19 al:3
......................UCUCuGAUUACAGUAGUUAAG..................................................... len:21 al:1
......................UgUCAGAUUACAGUAGUUAAGU.................................................... len:22 al:9
......................UCUCAGAUUACAGUAGcUAAGU.................................................... len:22 al:157
......................UCUuAGAUUACAGUAGUUAAGU.................................................... len:22 al:21
......................UCUCAGAUUACAGUAGgUAAGU.................................................... len:22 al:8
......................UCUCAGAUUACuGUAGUUAAGUA................................................... len:23 al:3
......................UCUCAGAUUACAGUAGUUA....................................................... len:19 al:1046
......................UCgCAGAUUACAGUAGUUAAGU.................................................... len:22 al:5
......................UCUCAGAUcACAGUAGUUAAGUA................................................... len:23 al:6
......................UCUCAGAUUACAGUuGUUAAGU.................................................... len:22 al:8
......................UCUCAGAUaACAGUAGUUAAGU.................................................... len:22 al:9
......................UCUCAGAUUACAGUAGUUAAGUg................................................... len:23 al:24
......................UCUCuGAUUACAGUAGUUAAGU.................................................... len:22 al:29
......................UCUCAGcUUACAGUAGUUAAGU.................................................... len:22 al:1
......................UCUCAaAUUACAGUAGUUAAGU.................................................... len:22 al:26
......................UCUCcGAUUACAGUAGUUAAGU.................................................... len:22 al:4
......................cCUCAGAUUACAGUAGUUAAG..................................................... len:21 al:1
......................UCUCAGAUUACAGUAGUUuA...................................................... len:20 al:1
......................cCUCAGAUUACAGUAGUUA....................................................... len:19 al:1
......................UCUCAGgUUACAGUAGUUAAGU.................................................... len:22 al:163
......................UCUCAGAUUACAcUAGUUAAGU.................................................... len:22 al:1
......................UCUCAGAUUACgGUAGUUAAGUA................................................... len:23 al:17
......................UCUCAGAUUAaAGUAGUUAAGU.................................................... len:22 al:2
......................aCUCAGAUUACAGUAGUUAAGUA................................................... len:23 al:4
......................UCUCAGAUUACAGUAGUc........................................................ len:18 al:18
......................UCaCAGAUUACAGUAGUUAAGU.................................................... len:22 al:42
......................UCUCAGAUUACAGgAGUUAAGU.................................................... len:22 al:6
......................UCUCcGAUUACAGUAGUUAAGUA................................................... len:23 al:1
......................UCUCAGAUUACAGUAGaUAAGU.................................................... len:22 al:15
......................UCUCAGAUUACAGUAGUUAAGUc................................................... len:23 al:8
......................UCUCAGAUUAgAGUAGUUAAGU.................................................... len:22 al:4
......................UCUCAGAUUACAGUAGUcAAGU.................................................... len:22 al:143
......................UCUCAGAUUACAGUAGUUAAuU.................................................... len:22 al:24
......................UCUCAGAUUACuGUAGUUA....................................................... len:19 al:1
......................UCUCAGAgUACAGUAGUUAAGU.................................................... len:22 al:7
......................UCUCAGAUUACAGUAGUUAAGUA................................................... len:23 al:3499
......................UCUuAGAUUACAGUAGUUAAGUA................................................... len:23 al:1
......................UCUCAGAUUACAGUAuUUAAGU.................................................... len:22 al:2
......................UCUCAGgUUACAGUAGUUAAGUA................................................... len:23 al:11
......................UCUCAGAUcACAGUAGUUAAGU.................................................... len:22 al:65
......................UCUCAGAUUACAGUAGUUAAGUAA.................................................. len:24 al:8
......................UCUCAGAUUACAGUAGcUA....................................................... len:19 al:5
......................aCUCAGAUUACAGUAGUUAAGU.................................................... len:22 al:152
......................UCcCAGAUUACAGUAGUUA....................................................... len:19 al:3
......................UCUCAGAUgACAGUAGUUAAGU.................................................... len:22 al:3
......................UCUCAGAaUACAGUAGUUAAGU.................................................... len:22 al:8
......................UCUCAGAUUuCAGUAGUUAAGU.................................................... len:22 al:7
......................UCUCAGAUUACAuUAGUUAAGU.................................................... len:22 al:4
......................UCUCAGAcUACAGUAGUUAAGU.................................................... len:22 al:142
......................UCUCAGAUUAuAGUAGUUAAGU.................................................... len:22 al:47
......................UCUCAGAUUACAGUAGUg........................................................ len:18 al:1
......................UCUCAGuUUACAGUAGUUAAGUA................................................... len:23 al:1
......................UCUCAcAUUACAGUAGUUAAGU.................................................... len:22 al:2
......................UCUCgGAUUACAGUAGUUA....................................................... len:19 al:3
......................UCUCAGAUUACAGUAGUa........................................................ len:18 al:7
......................UCUCAGAUUACAGUgGUUA....................................................... len:19 al:6
......................UCUCAGAUUACAGUAaUUA....................................................... len:19 al:1
......................UCUCAGAUUACAGUAGUUAAGUAc.................................................. len:24 al:48
......................UCUCAGAUUACAGUAGUUAAaUA................................................... len:23 al:2
......................UCUCAGAUUACAGUAaUUAAGUA................................................... len:23 al:1
......................UCUCAGAUUACAGUAGUUuAGU.................................................... len:22 al:9
......................UCUaAGAUUACAGUAGUUA....................................................... len:19 al:2
......................UCUCAGAUUuCAGUAGUUAAGUA................................................... len:23 al:2
......................UCUCAGAUcACAGUAGUU........................................................ len:18 al:2
......................UCUCAGAUUACgGUAGUUAAGU.................................................... len:22 al:262
......................UCUCgGAUUACAGUAGUUAAGUA................................................... len:23 al:21
......................UCUCAGAUUACAGUAGUUAuGUA................................................... len:23 al:2
......................UuUCAGAUUACAGUAGUUAAGU.................................................... len:22 al:178
......................UCUCAGAUUACAGUAGUUAAG..................................................... len:21 al:122
......................UCUCAGAUUACAGUAGUUAAc..................................................... len:21 al:3
......................UCUCAGAUUACAGUAGaUA....................................................... len:19 al:3
......................UCUCAGAUUACAGcAGUUAAGUA................................................... len:23 al:6
......................gCUCAGAUUACAGUAGUUAAGUA................................................... len:23 al:2
......................UCUCAGAUUACAGaAGUUAAGU.................................................... len:22 al:5
......................UuUCAGAUUACAGUAGUUAAGUA................................................... len:23 al:11
......................UCUCAGAUUACAGUAGUUAgG..................................................... len:21 al:1
......................UCUCAGAUUAuAGUAGUUAAGUA................................................... len:23 al:7
......................UCUCAGAUUACAGUAGUUu....................................................... len:19 al:20
......................UCUCAGAUUgCAGUAGUUA....................................................... len:19 al:5
......................cCUCAGAUUACAGUAGUUAAGUA................................................... len:23 al:21
......................UCUCAGAUUACAGUAGUUAgGU.................................................... len:22 al:274
......................UCUCAGAUcACAGUAGUUA....................................................... len:19 al:3
......................UCUCAGAUUACAGUAGUUgAGU.................................................... len:22 al:117
......................UCUCAGAUUACAGUAGUUAAa..................................................... len:21 al:12
......................UCUCAGAUUACAGUAGUgAAGU.................................................... len:22 al:1
......................UCUCAGAUUACAGUAGcU........................................................ len:18 al:1
......................UCUCAGAUUACAGUAGUUg....................................................... len:19 al:9
......................UCUCAGAcUACAGUAGUU........................................................ len:18 al:1
......................UCUCAGAUUACAGUcGUUAAGUA................................................... len:23 al:1
......................UCUCAGAUUACAGUAGUUAAcUA................................................... len:23 al:1
......................UCUCAGAUUACAGUAGUUAAuUA................................................... len:23 al:2
.......................CUCAGAUUACAGUAGUUAAGa.................................................... len:21 al:21
.......................CUCAGAUUACAGUAGUUAgGUA................................................... len:22 al:1
.......................CUCAGAUUACAGUAGUgAAGU.................................................... len:21 al:1
.......................CUCAGAUUACAGUAGUUAAcU.................................................... len:21 al:7
.......................CUCAGAUUACAGUAGUUAAGUA................................................... len:22 al:94
.......................CUCAGAUcACAGUAGUUAAGU.................................................... len:21 al:4
.......................CUCAGAUUACAGUgGUUAAG..................................................... len:20 al:1
.......................CUCgGAUUACAGUAGUUAAGU.................................................... len:21 al:12
.......................CUCAGAUUACAGUAGUUAAGUAc.................................................. len:23 al:8
.......................CUuAGAUUACAGUAGUUAAGU.................................................... len:21 al:1
.......................CUCAGAUUACAGUAGaUAAGU.................................................... len:21 al:1
.......................CUCAGAUUACAGUAGUUAAG..................................................... len:20 al:1
.......................CUCAGAUUACAGUAGUUu....................................................... len:18 al:1
.......................CUCAGAUUACAGUAGUUAAGUc................................................... len:22 al:1
.......................CUCAGAUUACAGUAGUUAAGUuA.................................................. len:23 al:1
.......................CUCAGgUUACAGUAGUUAAGUA................................................... len:22 al:3
.......................CUCAGAUUACAGUAGUUAAGcA................................................... len:22 al:9
.......................CUCAGAcUACAGUAGUUAAGUA................................................... len:22 al:1
.......................CUCAGAUUACAGUAGUUAAGUAA.................................................. len:23 al:1
.......................CUCAGAcUACAGUAGUUAAGU.................................................... len:21 al:4
.......................CUCAaAUUACAGUAGUUAAGU.................................................... len:21 al:1
.......................CUCAGAUUACAGUAGUUAAGUu................................................... len:22 al:6
.......................CUCAGAUUACAGUAGUUAAGg.................................................... len:21 al:24
.......................CUCAGAUUACAGUAGUcA....................................................... len:18 al:1
.......................CUCAGAUUACAGUAGUUAAaUA................................................... len:22 al:1
.......................CUCAGAUUACAGUAGUUAu...................................................... len:19 al:2
.......................CUCAGAUUACAGUgGUUAAGU.................................................... len:21 al:6
.......................CUCAGgUUACAGUAGUUAAGU.................................................... len:21 al:2
.......................CUCAGAUUACAGUAGUUAAGU.................................................... len:21 al:1808
.......................CUCAGAUUACAGUAGUUAAaU.................................................... len:21 al:1
.......................CUCAGAUUACAGcAGUUAAGUA................................................... len:22 al:1
.......................CUCAGAUUACAGUAGUUAAGc.................................................... len:21 al:305
.......................CUCAGAUUgCAGUAGUUAAGU.................................................... len:21 al:4
.......................CaCAGAUUACAGUAGUUAAGUA................................................... len:22 al:1
.......................CUCAGAUUACAGUAGUcAAGU.................................................... len:21 al:7
.......................gUCAGAUUACAGUAGUUAAGU.................................................... len:21 al:1
.......................CUCAGAUUcCAGUAGUUAAGU.................................................... len:21 al:1
.......................CcCAGAUUACAGUAGUUAAGU.................................................... len:21 al:10
.......................CUCAGAUUACAGUAGUc........................................................ len:17 al:1
.......................CUCAGAUUACAGUAGUUAgGU.................................................... len:21 al:15
.......................uUCAGAUUACAGUAGUUAAGU.................................................... len:21 al:4
.......................CUCAGAUUACAaUAGUUAAGU.................................................... len:21 al:2
.......................CUCAGAUUACAGUAGUUAAGUg................................................... len:22 al:1
.......................CUCAGAUUACgGUAGUUAAGU.................................................... len:21 al:7
.......................CUCgGAUUACAGUAGUUAAGUA................................................... len:22 al:1
.......................CUCAGAUUACAGUAGUUAAGUAu.................................................. len:23 al:30
.......................CUCAGAUUACAGcAGUUAAGU.................................................... len:21 al:4
.......................CUCAGAUUACAGUAGUUAuGU.................................................... len:21 al:1
.......................CUCuGAUUACAGUAGUUAAGU.................................................... len:21 al:2
.......................CUCAGAUUACAGUAGUUA....................................................... len:18 al:24
.......................CUCAGAUUACAGUAGUUAAGUAuU................................................. len:24 al:10
........................UCAGAcUACAGUAGUUAAGU.................................................... len:20 al:2
........................UCAGAUUACAGUAGUUAAGg.................................................... len:20 al:3
........................UCAGAUUACAGUAGUUAAGc.................................................... len:20 al:23
........................UCAGAUUACgGUAGUUAAGU.................................................... len:20 al:2
........................UCAGAUUACAGUAGUUAgGU.................................................... len:20 al:3
........................UCAGAUUACAGUAGUUAAGcA................................................... len:21 al:1
........................UCAGAUUACAGUAGUUAAcU.................................................... len:20 al:1
........................UCAGAUUACAGUAGUUAAGa.................................................... len:20 al:1
........................UCAGAUUACAGUAGcUAAGU.................................................... len:20 al:1
........................UCAGAUUACAGUAGUUAAGU.................................................... len:20 al:114
........................UCAGAUUACAGUAGUUgAGU.................................................... len:20 al:1
........................UCAGAUUACAGUAGUcAAGU.................................................... len:20 al:2
........................UCAGAUUACAGUAGUUAAaU.................................................... len:20 al:1
........................UCAGAUUACAGUAGUUAAGUA................................................... len:21 al:7
.........................CAGAUUACAGUAGUUAAGUA................................................... len:20 al:4
.........................CAGAUUACAGUAGUUAAGU.................................................... len:19 al:45
.........................CAGAUUACAGUAGUUAAGa.................................................... len:19 al:1
.........................CgGAUUACAGUAGUUAAGU.................................................... len:19 al:4
.........................CAGAUUACAGUAGUUAAGg.................................................... len:19 al:1
.........................CAGAUUACAGUAGcUAAGU.................................................... len:19 al:1
.........................CAGAUUACAGUAGUUAAGc.................................................... len:19 al:5
..........................AGAUUACAGUAGUUAAGU.................................................... len:18 al:2
..........................AGAcUACAGUAGUUAAGU.................................................... len:18 al:1
.............................................AUUAAAUACUUAACUACUGuAAUCUGAACAU.................... len:31 al:6
.....................................................CUUAACUACUGuAAUCUGAACAU.................... len:23 al:181
.....................................................CUUAACUACUGuAAUCUGAACA..................... len:22 al:50
.....................................................CUUAACUACUGuAAUCUGAAC...................... len:21 al:4
.....................................................CUUAACUACUGuAAUCUGAACAUU................... len:24 al:47
......................................................UUAACUACUGuAAUCUGAACA..................... len:21 al:18
......................................................UUAACUACUGuAAUCUGAACAU.................... len:22 al:123
......................................................UUAACUACUGuAAUCUGAAC...................... len:20 al:3
......................................................UUAACUACUGuAAUCUGAACAUU................... len:23 al:110
......................................................UUAACUACUGCAAUaUGAACAU.................... len:22 al:1
.......................................................UAACUACUGuAAUCUGAACAUU................... len:22 al:1
.......................................................UAACUACUGuAAUCUGAAC...................... len:19 al:1
........................................................AACUACUGuAAUCUGAACAUUCUAGACAUCU......... len:31 al:1
..........................................................CUACUGuAAUCUGAACAUUCUAGACAUCU......... len:29 al:2
...........................................................UACUGuAAUCUGAACAUUCUAGACAUCU......... len:28 al:3
...........................................................UACUGuAAUCUGAACAUU................... len:18 al:1
............................................................ACUGuAAUCUGAACAUUCUAGACAU........... len:25 al:1
............................................................ACUGuAAUCUGAACAUUCUAGACAUCU......... len:27 al:4