Genome: /home/shared/8TB_HDD_01/sam/gitrepos/deep-dive/D-Apul/data/Amil/ncbi_dataset/data/GCF_013753865.1/GCF_013753865.1_Amil_v2.1_genomic.fa
Alignments: /home/shared/8TB_HDD_01/sam/gitrepos/deep-dive/D-Apul/output/13.2-Apul-sRNAseq-ShortStack-31bp-fastp-merged/ShortStack_out/merged_alignments.bam
Location: NC_058077.1:2892656-2892749 plus
Post-script file name: /home/shared/8TB_HDD_01/sam/gitrepos/deep-dive/D-Apul/output/13.2-Apul-sRNAseq-ShortStack-31bp-fastp-merged/ShortStack_out/strucVis/Cluster_9465.ps
Locus Name: Cluster_9465
GGCAUCUGUGAACUCCAGCCUACAUGUGCUGCACUGGAACUCUUUUGCAAGACAUUCCAUGGCAGCUGUGUGCGCUAGGGCUUCACCUUUCUCA
.......(((((.((((((.((((((.(((((..(((((.((((....))))..)))))..))))))))))).))).))).)))))........ (-33.10)
.GCAUCUGUGAACUCCAGCC.......................................................................... len:19 al:5
.GCAUCUGUGAACUCCAGCu.......................................................................... len:19 al:1
.GCAUCUGUGAACUCCAGCa.......................................................................... len:19 al:2
..CAUCUGUGAACUCCAGCu.......................................................................... len:18 al:1
..CAUCUGUGAACUCCAGCC.......................................................................... len:18 al:4
...................CUACAUGUGCUGCACUGGAACU..................................................... len:22 al:1
...................CUACAUGUGCUGCACUGGAACUCU................................................... len:24 al:1
...................CUACAUGUGCUGCACUGGAACUCUc.................................................. len:25 al:1
...................CUACAUGUGCUGCACUGGAACUCUUUaGCAA............................................ len:31 al:1
....................UACAUGUGCUGCACUGGAACUCaUUU................................................ len:26 al:1
....................UACAUGUGCUGCACUaGAACUC.................................................... len:22 al:1
....................UACAUGUGCUGCgCUGGAAC...................................................... len:20 al:1
....................UACAUGUGCUGCACUGGAACgCU................................................... len:23 al:7
....................UACAgGUGCUGCACUGGAACUCU................................................... len:23 al:2
....................UACAUGUGCUGuACUGGAACUCU................................................... len:23 al:3
....................UACAUGUGCUGCAuUGGAACUC.................................................... len:22 al:1
....................UACAUGUGCUGCACUGGAACUCcU.................................................. len:24 al:10
....................cACAUGUGCUGCACUGGAACUC.................................................... len:22 al:1
....................UACAUGUGCUGCACcGGAACUCUUU................................................. len:25 al:1
....................UACAUGUGCUGCACUGaAACUCUU.................................................. len:24 al:1
....................UACgUGUGCUGCACUGGAACU..................................................... len:21 al:6
....................UACAUGUGCUGCgCUGGAACUCUU.................................................. len:24 al:2
....................UACAUGcGCUGCACUGGAACUCUU.................................................. len:24 al:2
....................UACAUGUGCUaCACUGGAACUCU................................................... len:23 al:4
....................UACAUGUGCUGCACgGGAACUCU................................................... len:23 al:2
....................UcCAUGUGCUGCACUGGAACUCU................................................... len:23 al:2
....................UACAUGUGCUGCACUGGAc....................................................... len:19 al:1
....................UACAUGUGCUGCACUGGAuCUCU................................................... len:23 al:1
....................UACAUGUGCUGCACUGGAACUCUUUUu............................................... len:27 al:1
....................UACAUGUGCUGCACUGGAACUCUcUU................................................ len:26 al:2
....................UACAUGUGCUGCACUGGAACUa.................................................... len:22 al:24
....................UACAUGUGCUGCACUGGAACUu.................................................... len:22 al:45
....................UACAUGUGCUGCACUGGAgCUC.................................................... len:22 al:3
....................UACAUGUGCUGCACUGGAAgU..................................................... len:21 al:1
....................UACAUGUGCUGCACUGGAACUCUg.................................................. len:24 al:4
....................UACAUGUGCUGCACUGGAACUuU................................................... len:23 al:9
....................UcCAUGUGCUGCACUGGAACUCUU.................................................. len:24 al:1
....................UACAUGUGCUGuACUGGAACU..................................................... len:21 al:2
....................UACAUGUGCUGCACUGGAACUCU................................................... len:23 al:2505
....................UACAUGUGCUGCACcGGAACUCUU.................................................. len:24 al:1
....................UAuAUGUGCUGCACUGGAACUCUU.................................................. len:24 al:1
....................UACAUGUGCUGCACUGGAA....................................................... len:19 al:13
....................UACAUGUGuUGCACUGGAACUCU................................................... len:23 al:3
....................UACAUGUGCUGCACUGGAACUCUUUUa............................................... len:27 al:2
....................UACuUGUGCUGCACUGGAACU..................................................... len:21 al:3
....................UACgUGUGCUGCACUGGAACUCUU.................................................. len:24 al:2
....................UgCAUGUGCUGCACUGGAACU..................................................... len:21 al:6
....................UACAUGUGCcGCACUGGAACU..................................................... len:21 al:1
....................UACAUGUGCUGCACUGGAACUCUUc................................................. len:25 al:10
....................UACAUGUGCUGCACUuGAACU..................................................... len:21 al:1
....................UACAUGUGCUGCgCUGGAACU..................................................... len:21 al:3
....................UACAUGUGCUGCACUGGAACUCUUUaGCA............................................. len:29 al:1
....................UACAUGUGCUGCACUGGgACU..................................................... len:21 al:6
....................UACAUGUGCcGCACUGGAACUCU................................................... len:23 al:10
....................UgCAUGUGCUGCACUGGAACUCUU.................................................. len:24 al:2
....................UcCAUGUGCUGCACUGGAACU..................................................... len:21 al:2
....................UACAUGUGCcGCACUGGA........................................................ len:18 al:1
....................UACAUGUGCUGCAuUGGAACUCU................................................... len:23 al:1
....................UACAUGUGCUGCACUGGAcCUC.................................................... len:22 al:1
....................UACAUGUGCUGCACUGGAACg..................................................... len:21 al:26
....................UACAUGUGCUGCACUGGAACUCUUUU................................................ len:26 al:25
....................UACAUGUGCUGCACUGGAACUCUU.................................................. len:24 al:285
....................UACAUGUGCaGCACUGGAACUCU................................................... len:23 al:2
....................UACAUGUaCUGCACUGGAACU..................................................... len:21 al:1
....................UACAUGUGCUGCACUGGAACUCUUUa................................................ len:26 al:10
....................UACAUGUGCUGCAuUGGAACU..................................................... len:21 al:1
....................cACAUGUGCUGCACUGGAACU..................................................... len:21 al:4
....................cACAUGUGCUGCACUGGAAC...................................................... len:20 al:1
....................UACAUGUGCUGCACUGGAACUaU................................................... len:23 al:2
....................UACAUGUGCUGCACUGGAAC...................................................... len:20 al:48
....................UACAUGUGCUGCgCUGGA........................................................ len:18 al:1
....................UACAUGUGCUGCACUGGAACUCUUU................................................. len:25 al:86
....................UACAUGUGCUGCACUGGAACUC.................................................... len:22 al:193
....................UACAUGUGCUGCACUGGAACU..................................................... len:21 al:745
....................UACAUGcGCUGCACUGGAACUCU................................................... len:23 al:16
....................UACAUGUGCUGCACUGGAACUCUaU................................................. len:25 al:71
....................UACAUGUcCUGCACUGGAACUCU................................................... len:23 al:1
....................aACAUGUGCUGCACUGGAACUCU................................................... len:23 al:4
....................UACAUGUGCUGCACUGGAACUCUa.................................................. len:24 al:115
....................UACAUGUGCUGCACUGGu........................................................ len:18 al:3
....................UACAUGUGCUGCACUGGAACc..................................................... len:21 al:141
....................UACAUGUGCUGCACUGGAAuUCU................................................... len:23 al:5
....................UACAUGUGCUGCACaGGAACUCU................................................... len:23 al:4
....................UACAUGUGCUGCACUGGAACUCUaUU................................................ len:26 al:35
....................UACgUGUGCUGCACUGGAACUCU................................................... len:23 al:9
....................UACuUGUGCUGCACUGGAACUCU................................................... len:23 al:3
....................UACAUGUGCUGCACUGGAACcCUU.................................................. len:24 al:3
....................UACAUGUGCUGCACUGGAACUCc................................................... len:23 al:530
....................UAuAUGUGCUGCACUGGAACUCU................................................... len:23 al:5
....................UuCAUGUGCUGCACUGGAACUCU................................................... len:23 al:2
....................UACAUGUGCUGCACUGGuACU..................................................... len:21 al:4
....................UACAUGcGCUGCACUGGAACU..................................................... len:21 al:3
....................UACAUGUGCUGCgCUGGAACUCU................................................... len:23 al:17
....................UACAUGUGCUGCACUGGgACUCUU.................................................. len:24 al:1
....................UACAUGUGCUGCACUGGAACUCUcU................................................. len:25 al:2
....................UACAUGUGCUGCACUaGAACU..................................................... len:21 al:3
....................UACAUGUGCUGCACUGGAAg...................................................... len:20 al:1
....................UACAUGUGCUGCACUGGAcCUCU................................................... len:23 al:1
....................UACAUGUGCUGCACUaGAACUCUU.................................................. len:24 al:1
....................UACAUGUGCUGCACUGGAACUCa................................................... len:23 al:594
....................cACAUGUGCUGCACUGGAACUCU................................................... len:23 al:12
....................UACAUGUGCUGCACUGGAACUCUUUaGCAA............................................ len:30 al:1
....................UACAUGcGCUGCACUGGA........................................................ len:18 al:2
....................UACAUGUGCUGCACUGGAACUCgU.................................................. len:24 al:1
....................UACAUGUGCUGCACaGGAACUCUUU................................................. len:25 al:2
....................UACAUGUGCUGCACUGGAACUCUUUaGC.............................................. len:28 al:11
....................UuCAUGUGCUGCACUGGAACUC.................................................... len:22 al:3
....................UACAUGUGCUGCACcGGAACUCU................................................... len:23 al:8
....................UACAUGUGCUGCACUGaA........................................................ len:18 al:1
....................UACAUGUGCUGCACUGGAACa..................................................... len:21 al:146
....................UACAUGUGCUGCACUGGAgCUCU................................................... len:23 al:9
....................UACAUGUGCUGCACUGGAAa...................................................... len:20 al:1
....................UACAUGUGCUGCACUGGAACcC.................................................... len:22 al:7
....................UACAUGUGCcGCACUGGAACUC.................................................... len:22 al:1
....................UACAUGUGCcGCACUGGAA....................................................... len:19 al:1
....................UACAcGUGCUGCACUGGAACUCUU.................................................. len:24 al:1
....................gACAUGUGCUGCACUGGAACUCU................................................... len:23 al:6
....................UACAUGUGCUGCACUGGAACaCU................................................... len:23 al:1
....................UACAcGUGCUGCACUGGAACU..................................................... len:21 al:4
....................UACAUGUGCUGCACUGGgACUCU................................................... len:23 al:11
....................UACAUGUGCUGCACU........................................................... len:15 al:1
....................UACAUGUGCUGCACUGGA........................................................ len:18 al:39
....................UACAUGUaCUGCACUGGAACUCU................................................... len:23 al:2
....................UACAUGUGCUGCACUGGAACUgU................................................... len:23 al:1
....................UACAUGUGCUGCACUGGAACUCUUaU................................................ len:26 al:17
....................UACAUGUGCUGCACUGGAAu...................................................... len:20 al:11
....................UACAaGUGCUGCACUGGAACUCUUU................................................. len:25 al:1
....................UACAUGUGCUGCACUGGAACcCU................................................... len:23 al:41
....................UACAUGUGCUGCACUGGAu....................................................... len:19 al:3
....................UACAUGUGCUGCACUGGAgCU..................................................... len:21 al:8
....................UACcUGUGCUGCACUGGAACU..................................................... len:21 al:1
....................UACAUGUGCUGuACUGGAACUCUU.................................................. len:24 al:2
....................UACAUaUGCUGCACUGGAACUCU................................................... len:23 al:1
....................UACAUGUGCUGCACUGGAACgCUU.................................................. len:24 al:3
....................UACAUGUGCUGCACUGGAg....................................................... len:19 al:1
....................UACAUGUGCUGCACUGGAAuU..................................................... len:21 al:2
....................UACAUGUGCUGCACUGaAACUCU................................................... len:23 al:1
....................UACAUGUGCUGCACUGGAACUCg................................................... len:23 al:72
....................UACAUGUGCUGCACUGGAgCUCUU.................................................. len:24 al:4
....................UACAUGUGCUGCACUGGAACUCUUa................................................. len:25 al:23
....................UACAUGUGCUGCuCUGGAACUCU................................................... len:23 al:1
....................UACAcGUGCUGCACUGGAACUCU................................................... len:23 al:6
....................UgCAUGUGCUGCACUGGAACUCU................................................... len:23 al:16
....................UgCAUGUGCUGCACUGGAAC...................................................... len:20 al:1
....................UACAUGUGCUGCACUaGAACUCU................................................... len:23 al:1
....................UACAUGUGCUGCACUGGAACUCaU.................................................. len:24 al:87
....................gACAUGUGCUGCACUGGAACUCUU.................................................. len:24 al:1
....................UuCAUGUGCUGCACUGGAAC...................................................... len:20 al:1
....................UACAUGUGCUGCACUGGAACUCaUU................................................. len:25 al:29
....................UACAUGUGCUGCACUGGuACUCU................................................... len:23 al:1
....................UACAUGaGCUGCACUGGAACUCU................................................... len:23 al:3
....................UACAUGUGCUGCACUGGAACgC.................................................... len:22 al:1
....................cACAUGUGCUGCACUGGAACUCUU.................................................. len:24 al:1
....................UACAUGUGCUGCACUGGAACUCUc.................................................. len:24 al:47
....................UACAUGUGCUGCgCUGGAACUC.................................................... len:22 al:1
....................UACAcGUGCUGCACUGGAAC...................................................... len:20 al:1
.....................ACAUGUGCUGCACUGGAACUCUc.................................................. len:23 al:1
.....................ACAUGUGCUGCACUGGAACcCU................................................... len:22 al:1
.....................ACAUGUGCUGCACUGGAACUa.................................................... len:21 al:1
.....................ACAUGUGCUGCACUGGAACUCc................................................... len:22 al:1
.....................ACAUGUGCUGCACUGGAACUC.................................................... len:21 al:1
.....................ACAUGUGCUGCACUGGAACUCU................................................... len:22 al:10
.....................ACAUGUGCUGCACUGGAACc..................................................... len:20 al:1
.....................ACAUGUGCUGCACUGGAACUCaU.................................................. len:23 al:2
.....................ACAUGUGCUGCACUGGAACUCUU.................................................. len:23 al:1
.......................AUGUGCUGCACUGGAACc..................................................... len:18 al:1
.......................AUGUGCUGCACUGGAACUCUU.................................................. len:21 al:1
.......................AUGUGCaGCACUGGAACUCUUU................................................. len:22 al:1
.......................AUGUGCUGCACUGGAACUCU................................................... len:20 al:3
........................UGUGCUGCACUGGAACUCUUc................................................. len:21 al:1
........................UGUGCUGCACUGGAACUC.................................................... len:18 al:1
........................UGUGCUGCACUGGAACcCU................................................... len:19 al:4
........................UGUGCUGCACUGGAACUCc................................................... len:19 al:3
........................UGUGCUGCACUGGAACUCUa.................................................. len:20 al:3
........................UGUGCUGCACUGGAACUCa................................................... len:19 al:1
........................UGUGCUGCACUGGAACUCU................................................... len:19 al:19
........................UGUGCUGCACUGGAACUu.................................................... len:18 al:1
........................UGUGCUGCACUGGAACUCg................................................... len:19 al:1
........................UGUGCUGCACUGGAACUCUUUc................................................ len:22 al:2
........................UGUGCUGCACUGGAACUCUU.................................................. len:20 al:5
.........................GUGCUGCACUGGAACUCaU.................................................. len:19 al:1
...........................................UUaGCAAGACAUUCCAUGGCAGCUGUGUGCG.................... len:31 al:42
...........................................UUaGCAAGACAUUCCAUGGCAGCUGUGU....................... len:28 al:1
...........................................UUaGCAAGACAUUCCAUGGCAGCUGUGUGC..................... len:30 al:1
...........................................UUaGCAAGACAUUCCAUGGCAGCUGUGUG...................... len:29 al:1
...................................................ACAUUCCAUGGCAGCUGUGUGCc.................... len:23 al:5
...................................................ACAUUCCAUGGCAGCUGUGUGCG.................... len:23 al:51
...................................................ACAUUCCAUGGCAGCUGUGUGCGg................... len:24 al:1
...................................................ACAUUCCAUGGCAGCUGUGUGCu.................... len:23 al:12
...................................................ACAUUCCAUGGCAGCUGUGUGCGC................... len:24 al:3
...................................................ACAUUCCAUGGCAGCUGUGUGCa.................... len:23 al:36
...................................................ACAUUCCAUGGCAGCUGUGUGC..................... len:22 al:7
...................................................ACAUUCCAUGGCAGCUGUGUGu..................... len:22 al:1
...................................................ACAUUCCAUGGCAGCUGUGUG...................... len:21 al:2
...................................................ACAUUCCAUGGCAGCUGUGUGCGu................... len:24 al:14
...................................................ACAUUCCAUGGCAGCUGUGUGCuC................... len:24 al:1
...................................................ACAUUCCAUGGCAGCUGUGUGCGaU.................. len:25 al:3
...................................................gCAUUCCAUGGCAGCUGUGUGCG.................... len:23 al:1
...................................................ACuUUCCAUGGCAGCUGUGUGCG.................... len:23 al:1
...................................................ACAUUCCAUGGCAGCUGUGUGCGuU.................. len:25 al:1
...................................................ACAUUCCAUGGCAGCUGUGUa...................... len:21 al:2
....................................................CAUUCCAUGGCgGCUGUGUGCG.................... len:22 al:1
....................................................CAUUCCAUGGCAGCUGUGUGCGC................... len:23 al:1
....................................................CAUUCCAUGGCAGCUGUGUGCGa................... len:23 al:1
....................................................gAUUCCAUGGCAGCUGUGUGC..................... len:21 al:1
....................................................CAUUCCAUGGCAGCUGUGUGCa.................... len:22 al:157
....................................................CAUcCCAUGGCAGCUGUGUGCG.................... len:22 al:1
....................................................CAUUCCAUGGCAGCUGUGUGuG.................... len:22 al:1
....................................................CgUUCCAUGGCAGCUGUGUGCG.................... len:22 al:1
....................................................uAUUCCAUGGCAGCUGUGUGCGC................... len:23 al:1
....................................................gAUUCCAUGGCAGCUGUGUG...................... len:20 al:1
....................................................CAUUCCAUGGCAGCUGUGUGCc.................... len:22 al:10
....................................................CAUUCCAUGGCAGCUGUGUG...................... len:20 al:23
....................................................CAUUCCAcGGCAGCUGUGUGCG.................... len:22 al:1
....................................................CAUUCCAUGGuAGCUGUGUGCG.................... len:22 al:2
....................................................CAUUCCAUGGCAGCUGUGUGu..................... len:21 al:13
....................................................CAUUCCAUGGCAGCUGUGU....................... len:19 al:3
....................................................gAUUCCAUGGCAGCUGUGUGCG.................... len:22 al:2
....................................................CAcUCCAUGGCAGCUGUGUGCG.................... len:22 al:2
....................................................CAUUCCAUGGCAGCUGUGUGa..................... len:21 al:7
....................................................CAUUCCAUGGCAGCUGUGUGC..................... len:21 al:15
....................................................CAUUCCAUGGCAGCUGUGUa...................... len:20 al:3
....................................................uAUUCCAUGGCAGCUGUGUGCG.................... len:22 al:1
....................................................CAUUCCAUGcCAGCUGUGUGCG.................... len:22 al:1
....................................................CAUUCCAUGGCAGCUGUGUGg..................... len:21 al:1
....................................................CAUUCCAUGGCAGCUGUGUGCGu................... len:23 al:17
....................................................CAUUCCAUGGCAGCUGUGUGgG.................... len:22 al:1
....................................................uAUUCCAUGGCAGCUGUGUGC..................... len:21 al:1
....................................................CAUUCCAUGGCAGCUGUG........................ len:18 al:1
....................................................CAUUCCAUGGCAGCaGUGUGCG.................... len:22 al:1
....................................................CAUUCCAUGGCAGCcGUGUGCG.................... len:22 al:2
....................................................CAUUCCAUGGCAGCUGUGUGCu.................... len:22 al:26
....................................................CAUUCCAUGGCAGCUGUGUGCG.................... len:22 al:257
.....................................................AUUCCAUGGCAGCUGUGUGCc.................... len:21 al:15
.....................................................AUUCCAUGGCAGCUGUGUGCa.................... len:21 al:89
.....................................................uUUCCAUGGCAGCUGUGUGCG.................... len:21 al:2
.....................................................gUUCCAUGGCAGCUGUGUGCG.................... len:21 al:2
.....................................................AUcCCAUGGCAGCUGUGUGC..................... len:20 al:1
.....................................................AUUCCAUGGCAGCUGUGUGC..................... len:20 al:16
.....................................................AUUCuAUGGCAGCUGUGUGC..................... len:20 al:1
.....................................................AUUCCAUGGCAGCUGUGUGCGu................... len:22 al:20
.....................................................uUUCCAUGGCAGCUGUGUGC..................... len:20 al:1
.....................................................AUUCCgUGGCAGCUGUGUGCG.................... len:21 al:1
.....................................................AUUCCAUGGCAGCUGUGUGCGC................... len:22 al:1
.....................................................AUUCCAUGGCAGCUGUGUGCG.................... len:21 al:103
.....................................................AUUCCAUGGCAGCUGUGUGCGa................... len:22 al:1
.....................................................AUcCCAUGGCAGCUGUGUGCG.................... len:21 al:1
.....................................................AUUCCAUGGCAGCUGUGUa...................... len:19 al:6
.....................................................AUUCCAUGGCAGCUGUGU....................... len:18 al:4
.....................................................AUUCCAUGGCAGCUGUGUGu..................... len:20 al:8
.....................................................AUUCCAUGGCAGuUGUGUGCG.................... len:21 al:1
.....................................................AUUCCAUGGCAGCUGUGUG...................... len:19 al:20
.....................................................AUUCCAUGGCAGCUGUGUGCu.................... len:21 al:28
.....................................................gUUCCAUGGCAGCUGUGUGC..................... len:20 al:1
.....................................................AUUCCAUGGCAGCUGUGUGCGuU.................. len:23 al:3
.....................................................AUUCCAUGGCAGCUGUGUGa..................... len:20 al:1
.....................................................AUUCCAUGGCAGCUaUGUGCG.................... len:21 al:1
......................................................UUCCAUGGCAGCUGUGUGu..................... len:19 al:3
......................................................UUCCAUGGCAGCUGUGUGCu.................... len:20 al:1
......................................................UUCCAUGGCAGCUGUGUGCGC................... len:21 al:1
......................................................UUCCAUGGCAGCUGUGUGC..................... len:19 al:1
......................................................UUCCAUGGCAGCUGUGUGCG.................... len:20 al:2
.......................................................UCCAUGGCAGCUGUGUGCG.................... len:19 al:1
........................................................CCAUGGCAGCUGUGUGCG.................... len:18 al:1