Genome: /home/shared/8TB_HDD_01/sam/gitrepos/deep-dive/D-Apul/data/Amil/ncbi_dataset/data/GCF_013753865.1/GCF_013753865.1_Amil_v2.1_genomic.fa
Alignments: /home/shared/8TB_HDD_01/sam/gitrepos/deep-dive/D-Apul/output/13.2-Apul-sRNAseq-ShortStack-31bp-fastp-merged/ShortStack_out/merged_alignments.bam
Location: NC_058069.1:21012147-21012242 minus
Post-script file name: /home/shared/8TB_HDD_01/sam/gitrepos/deep-dive/D-Apul/output/13.2-Apul-sRNAseq-ShortStack-31bp-fastp-merged/ShortStack_out/strucVis/Cluster_3674.ps
Locus Name: Cluster_3674
UGAUUCAAGACUAUGUACUCAGCUUUCGCGGGAUAAAAACUCCUUCAUGUGAAUUUUUAGCCCGCGGAAGUUGCGUAAGUAUGUCACAUUCCACCA
........((((((.(((.(((((((((((((.((((((.(((.....).)).)))))).))))))))))))).))).))).)))........... (-34.60)
....................AGCUUUCGCGGGAUAAAAACcC...................................................... len:22 al:1
....................AGCUUUCGCGGGAUAAAAACUC...................................................... len:22 al:63
....................AGCUUUCGCGGGAUAAAAACUCaUU................................................... len:25 al:1
....................AGCUUUCGCGGGAUAAAAACg....................................................... len:21 al:1
....................AGCUUUCGCGGGAUAAAgACUC...................................................... len:22 al:1
....................gGCUUUCGCGGGAUAAAAACUC...................................................... len:22 al:3
....................AGCUUUCGCGGGAUAAAAACUCg..................................................... len:23 al:1
....................AGCUUUCGCGGGAUAAAAACUu...................................................... len:22 al:2
....................AGCUUUCGCGGGAUAAAAACUCC..................................................... len:23 al:9
....................uGCUUUCGCGGGAUAAAAACUC...................................................... len:22 al:2
....................AGCUUUgGCGGGAUAAAAACUC...................................................... len:22 al:1
....................AGCUUUCGCaGGAUAAAAACU....................................................... len:21 al:1
....................gGCUUUCGCGGGAUAAAAACU....................................................... len:21 al:1
....................AGCUUUCGCGGGAUAAAAgCUC...................................................... len:22 al:1
....................AGCUUUCGCGGGAUAAAAACUCuU.................................................... len:24 al:1
....................AGCUUUCGCGGGAUAAAAACUa...................................................... len:22 al:2
....................AGCUUUCGCGGGAUAAAAACc....................................................... len:21 al:8
....................AGCUUUCGCGGuAUAAAAACUCC..................................................... len:23 al:1
....................AGCUUUCGuGGGAUAAAAACU....................................................... len:21 al:1
....................AGCUUUCGCGGGAUAAAAACUCa..................................................... len:23 al:27
....................AGCUUUCGCGGGAUAAAA.......................................................... len:18 al:1
....................AGCUUUCGCGGGAUAAAAACUCu..................................................... len:23 al:12
....................AGCUUUCGCGGGAUAAAAACU....................................................... len:21 al:48
....................AGCUUUCGCaGGAUAAAAACUCC..................................................... len:23 al:1
....................AGCUUUCGCGGGAUAAAAAuU....................................................... len:21 al:1
....................AGCUUUCGCGGGAUAAAAACa....................................................... len:21 al:4
...........................................UUCAUGUGAAUUUUUAGCCCGCGGAAGUUGC...................... len:31 al:1
...................................................AAUUUUUAGCCCGCGGAAGUUGC...................... len:23 al:6
...................................................AAUUUUUAGCCCGCGGAAGUUGCu..................... len:24 al:5
...................................................AAUUUUUAGCCCGCGGAAGUUGu...................... len:23 al:1
...................................................AuUUUUUAGCCCGCGGAAGUUGC...................... len:23 al:1
....................................................AUcUUUAGCCCGCGGAAGUUGC...................... len:22 al:5
....................................................AUUUUUAGCCCGCGGAAGUUGCaU.................... len:24 al:176
....................................................AUUUUUAGCCCGCGGAAGUUGC...................... len:22 al:1284
....................................................AUUUUUAGCCCGCGGgAGUUGC...................... len:22 al:1
....................................................AUUUcUAGCCCGCGGAAGU......................... len:19 al:1
....................................................gUUUUUAGCCCGCGGAAGUUG....................... len:21 al:2
....................................................AUUUUUAGCCCGCGGAAGa......................... len:19 al:3
....................................................AUUUUUAGCCCGuGGAAGUUG....................... len:21 al:1
....................................................AUUUUUAGCCCaCGGAAGUUGC...................... len:22 al:1
....................................................AUUUUUAuCCCGCGGAAGUUGCG..................... len:23 al:1
....................................................AcUUUUAGCCCGCGGAAGUUGCG..................... len:23 al:1
....................................................AUUUUUAGuCCGCGGAAGUUGC...................... len:22 al:1
....................................................cUUUUUAGCCCGCGGAAGUUGC...................... len:22 al:1
....................................................AUUUUUAGCCCGCGGAAGUUGCa..................... len:23 al:1933
....................................................AUUUUUAGCCCGCGGAAGUUG....................... len:21 al:73
....................................................AUUUUUAGCCCGCGGAAGcUGC...................... len:22 al:6
....................................................AUUUUUAGCuCGCGGAAGUUGC...................... len:22 al:2
....................................................AUUUcUAGCCCGCGGAAGUUGCG..................... len:23 al:1
....................................................uUUUUUAGCCCGCGGAAGU......................... len:19 al:1
....................................................AUcUUUAGCCCGCGGAAGUUG....................... len:21 al:2
....................................................AUUUUUAGCCCGCGGAAGUcGCG..................... len:23 al:1
....................................................AUUUUUAGCCCGCGGAAGUUGCGU.................... len:24 al:5
....................................................AUUcUUAGCCCGCGGAAGUUGC...................... len:22 al:2
....................................................AUUUUUAGCCCGCGGgAGUUGCG..................... len:23 al:2
....................................................AcUUUUAGCCCGCGGAAGUUGC...................... len:22 al:5
....................................................AUUUUUAGCCCGCGGAAGgU........................ len:20 al:1
....................................................AUUUUUAGCCCGCGGAgGUUGC...................... len:22 al:1
....................................................AUUUcUAGCCCGCGGAAGUUGC...................... len:22 al:1
....................................................AUUUUUAGCCCGCGGAAGUUGg...................... len:22 al:16
....................................................AUUUUUAGCCCGCGGAAuUUGCG..................... len:23 al:1
....................................................AUUUUUAGCCCGCaGAAGUUG....................... len:21 al:1
....................................................AUUUUUgGCCCGCGGAAGUUGC...................... len:22 al:1
....................................................AUUUUUAGCCCGCGGuAGUUGC...................... len:22 al:1
....................................................AUUUUUAGCCCGCGGgAGUUG....................... len:21 al:1
....................................................AUUUUUAGCCCGCGGAgGUUGCG..................... len:23 al:5
....................................................AUUUUaAGCCCGCGGAAGUUGCG..................... len:23 al:1
....................................................AUUUUUAGCCCGCGGAAGUUGCaUA................... len:25 al:39
....................................................AUUUUUAGCCCGCGGAAGUgG....................... len:21 al:1
....................................................AUUUUUAGCCCGCGGAAGUUGCcU.................... len:24 al:18
....................................................AUUUUUAGCCCGCGGAAGUUGa...................... len:22 al:93
....................................................AUUUUUAGCCCGCGGAAGUcGC...................... len:22 al:5
....................................................AUUUUUAGCCCGCGGAAGUUGCG..................... len:23 al:342
....................................................AUcUUUAGCCCGCGGAAGUUGCG..................... len:23 al:1
....................................................AUUUUUAGCCCGCGGAAGUUcC...................... len:22 al:2
....................................................AUUUUUAGCCCGCGGAAGUUa....................... len:21 al:8
....................................................AUUUUUAGCCCGCGGAAGg......................... len:19 al:2
....................................................AUUUUUAGCCCGCGGAAGUUaC...................... len:22 al:7
....................................................uUUUUUAGCCCGCGGAAGUUGC...................... len:22 al:7
....................................................AUUUUUAGCCCGCGGAAG.......................... len:18 al:5
....................................................AUUUUUAGCCCGCGGAAGU......................... len:19 al:54
....................................................AUgUUUAGCCCGCGGAAGUUGC...................... len:22 al:1
....................................................AUUUUUAGCCCGCGGAAGUUGCuUA................... len:25 al:45
....................................................AUUUUUAGCCCGCGGAAGUc........................ len:20 al:6
....................................................AUUUUUAGCCCGCGGAAGc......................... len:19 al:8
....................................................AUUUUcAGCCCGCGGAAGUUGC...................... len:22 al:5
....................................................gUUUUUAGCCCGCGGAAGUUGC...................... len:22 al:11
....................................................AUUUUUAGCCCGCGGAAuUUGC...................... len:22 al:3
....................................................AUUUUUAGCCCGuGGAAGUUGC...................... len:22 al:2
....................................................AUUUUUAGCCCGCGGAAGUUGCuU.................... len:24 al:272
....................................................AUUUUUAGCCuGCGGAAGUUGC...................... len:22 al:1
....................................................AUUUUUAGCCCGCGGAAaUUGC...................... len:22 al:2
....................................................AUUUUUAGCCCGCGGAAGUUGu...................... len:22 al:761
....................................................AUUUUUAGCCCGCGGAAGUUGCGc.................... len:24 al:2
....................................................AUUUUUAGCCCGCGGAAGUa........................ len:20 al:3
....................................................AUUUUUAaCCCGCGGAAGUUGC...................... len:22 al:1
....................................................cUUUUUAGCCCGCGGAAGUUGCG..................... len:23 al:1
....................................................AUUUUUAGCCCGCGGAAGgUGC...................... len:22 al:2
....................................................AUUUUUAGCCCGCGGAAGUUc....................... len:21 al:9
....................................................AUUUUUAGCCCGCGGAAGUU........................ len:20 al:41
....................................................AUUaUUAGCCCGCGGAAGUUGC...................... len:22 al:4
....................................................AUUUaUAGCCCGCGGAAGUUGC...................... len:22 al:1
....................................................AUUUUUAGCCCGCGGAAGUUGCu..................... len:23 al:7236
....................................................AUUUUUAGCCCGCGGAAGUUGCc..................... len:23 al:1516
.....................................................UUUUUAGCCCGCGGAAGUUGu...................... len:21 al:21
.....................................................UUUUUAGCCCGCGGAAGUU........................ len:19 al:2
.....................................................UUUUUuGCCCGCGGAAGU......................... len:18 al:1
.....................................................UUUUUAGCCCGCGGAAGUUGCcU.................... len:23 al:1
.....................................................gUUUUAGCCCGCGGAAGUUGC...................... len:21 al:1
.....................................................aUUUUAGCCCGCGGAAGUUGC...................... len:21 al:2
.....................................................UUUUUAGCCCGCGGAAGUUGa...................... len:21 al:3
.....................................................UUUUUAGCCCGCGGAAGUUG....................... len:20 al:1
.....................................................UUUUUAGCCCGCGGAAGUUGC...................... len:21 al:33
.....................................................UUUUUAGCCCGCGGAAGUUGCu..................... len:22 al:460
.....................................................UUUUUAGCCCGCGGAAGUUGCaU.................... len:23 al:6
.....................................................UUUUUAGCCCGCGGAAGU......................... len:18 al:3
.....................................................UUUUUAGCCCGCGGAAGUUGCc..................... len:22 al:114
.....................................................UUUUUAGCCCGCGGAAGUUGCG..................... len:22 al:22
.....................................................UUUUUAGCCCGCGGAAGUUGCa..................... len:22 al:107
.....................................................UUUUUAGCCCGCGGAAGUUGCuU.................... len:23 al:9
......................................................UUUUAGCCCGCGGAAGUUGC...................... len:20 al:12
......................................................UUUUAGCCCGCGGAAGUUG....................... len:19 al:3
......................................................UUUUAGCCCGCGGAAGUUGCc..................... len:21 al:52
......................................................UUUUAGCCCGCGGAAGUUGCu..................... len:21 al:134
......................................................UUUUAGCCCGCGGAAGUUGCuU.................... len:22 al:7
......................................................UUUUAGCCCGCGGAAGUUGCaUA................... len:23 al:1
......................................................UUUUAGCCCGCGGAAGUUGCG..................... len:21 al:4
......................................................UUUUAGCCCGCGGAAGUUGCa..................... len:21 al:32
......................................................UUUUAGCCCGCGGAAGUUGu...................... len:20 al:5
......................................................UUUUAGCCCGCGGAAGUUGa...................... len:20 al:2
.......................................................UUUAGCCCGCGGAAGUUGCc..................... len:20 al:3
.......................................................UUUAGCCCGCGGAAGUUGCa..................... len:20 al:4
.......................................................UUUAGCCCGCGGAAGUUGCuU.................... len:21 al:2
.......................................................UUUAGCCCGCGGAAGUUGCu..................... len:20 al:12
........................................................UUAGCCCGCGGAAGUUGu...................... len:18 al:1
.........................................................UAGCCCGCGGAAGUUGCu..................... len:18 al:1