Genome: /home/shared/8TB_HDD_01/sam/gitrepos/deep-dive/D-Apul/data/Amil/ncbi_dataset/data/GCF_013753865.1/GCF_013753865.1_Amil_v2.1_genomic.fa
Alignments: /home/shared/8TB_HDD_01/sam/gitrepos/deep-dive/D-Apul/output/13.2-Apul-sRNAseq-ShortStack-31bp-fastp-merged/ShortStack_out/merged_alignments.bam
Location: NC_058068.1:598123-598215 plus
Post-script file name: /home/shared/8TB_HDD_01/sam/gitrepos/deep-dive/D-Apul/output/13.2-Apul-sRNAseq-ShortStack-31bp-fastp-merged/ShortStack_out/strucVis/Cluster_2521.ps
Locus Name: Cluster_2521
UGAAAACUGACAAUAGUUACAUUUCACUAGAUGAGCGCUAACUGUUAUUGUUCUGCGUUAUCGGUGAAAUUGUAACUGUUGUCUCCUGUUGUU
........((((((((((((((((((((.(((((.(((.(((.......)))..))))))))))))))).))))))))))))).......... (-34.50)
....................AUUUCACaAGAUGAGCGCUAAC................................................... len:22 al:1
....................AUaUCACUAGAUGAGCGCUA..................................................... len:20 al:1
....................AUUUCAuUAGAUGAGCGCUAAC................................................... len:22 al:1
....................uUUUCACUAGAUGAGCGCUA..................................................... len:20 al:1
....................AUUUCACUAGAUcAGCGCUAAC................................................... len:22 al:1
....................AUUUCACUAGAUGAGCGCUAACUG................................................. len:24 al:1
....................AUUUCACUAGAUGAGCGCg...................................................... len:19 al:1
....................AUUUCACUAGAUGAGCGCU...................................................... len:19 al:51
....................AUUUCACUAGAUGAGCGCa...................................................... len:19 al:4
....................AUUUCACUAGAUuAGCGCUAAC................................................... len:22 al:1
....................AUUUCACUgGAUGAGCGCUAAC................................................... len:22 al:7
....................AUUUCACUAGAUGAGCGCUgAC................................................... len:22 al:5
....................AUUUCACUAGAUGAGCGCUg..................................................... len:20 al:2
....................cUUUCACUAGAUGAGCGCUAACU.................................................. len:23 al:1
....................AUUUCACUAGAUGAGCGCUAAa................................................... len:22 al:10
....................uUUUCACUAGAUGAGCGCUAAC................................................... len:22 al:7
....................AUUUCACUAGAUGAGCGCgAAC................................................... len:22 al:1
....................AUUUCACUAGAUGAGCaCU...................................................... len:19 al:2
....................AUUUCACUAGAUGAGCGCUAACc.................................................. len:23 al:31
....................AUUUCACUAGAUGAaCGCUAAC................................................... len:22 al:2
....................AUUUuACUAGAUGAGCGCUAAC................................................... len:22 al:4
....................AUUUCACUAGAUGAGCGCUAAC................................................... len:22 al:1178
....................AUUUCACUAGAUGAGCGCUAu.................................................... len:21 al:1
....................AUUUCACUAGAUGAGCGCUAgCU.................................................. len:23 al:2
....................AUUUCACUAGAUGAGCGCUAACUuU................................................ len:25 al:2
....................AUUUCACUAGAUGAGCGCUA..................................................... len:20 al:85
....................AUUUCACUAGAUGAGCGCUgA.................................................... len:21 al:2
....................AUUUCACUAGAUGAGCGCUAgC................................................... len:22 al:10
....................AUUUCACUAGAUGAGCGCUu..................................................... len:20 al:1
....................AUUUCACUAGAUGgGCGCUAA.................................................... len:21 al:2
....................AUUUCACUAGAUGAGgGCU...................................................... len:19 al:1
....................AUUUCACUAGAUGAGCGCUAAuU.................................................. len:23 al:1
....................AUUUCAgUAGAUGAGCGCUAACU.................................................. len:23 al:1
....................AUUUCACUAGAUGAGCGCUAc.................................................... len:21 al:1
....................AUUUCACUAGAUGAGCGCUAACUu................................................. len:24 al:1
....................AUUUCACUAGAcGAGCGCUAAC................................................... len:22 al:4
....................AUUUCACUAGAUGAGCGCcA..................................................... len:20 al:9
....................gUUUCACUAGAUGAGCGCU...................................................... len:19 al:2
....................AUUcCACUAGAUGAGCGCU...................................................... len:19 al:2
....................gUUUCACUAGAUGAGCGCUAAC................................................... len:22 al:18
....................AUUUCgCUAGAUGAGCGCUA..................................................... len:20 al:1
....................AUUUCACUAGAUGAGCGCUAcC................................................... len:22 al:2
....................AUUUCcCUAGAUGAGCGCUA..................................................... len:20 al:1
....................AUUUCACUAGAUGAGCGCUAA.................................................... len:21 al:20
....................gUUUCACUAGAUGAGCGCUAACU.................................................. len:23 al:2
....................AUUUCACUAGgUGAGCGCUAAC................................................... len:22 al:4
....................AUUUCACUAGAUGgGCGCUAACU.................................................. len:23 al:1
....................AUUUCACUAGAUGgGCGCUAAC................................................... len:22 al:3
....................AUUUCACUAGAUGAGCGCgA..................................................... len:20 al:2
....................AUUUCACUAGAUGAGCGCUAACg.................................................. len:23 al:7
....................AUUUCACUAGAUGcGCGCUAAC................................................... len:22 al:1
....................AUUUCACUAGAUGAGCGCUAACU.................................................. len:23 al:176
....................AUUUCACUAGAUGAGCGCUcAC................................................... len:22 al:1
....................AUUUCACUAGAUGAGuGCUAAC................................................... len:22 al:1
....................uUUUCACUAGAUGAGCGCUAACU.................................................. len:23 al:2
....................AUUUCACUAGAUGAGCGCUAACa.................................................. len:23 al:148
....................AUUUCACUAGAUGAGCGCc...................................................... len:19 al:13
....................AUUcCACUAGAUGAGCGCUAAC................................................... len:22 al:8
....................AUUUCACUAGAUGAGCGuUAAC................................................... len:22 al:2
....................AcUUCACUAGAUGAGCGCUAAC................................................... len:22 al:6
....................AUUUuACUAGAUGAGCGCUAACU.................................................. len:23 al:1
....................AUcUCACUAGAUGAGCGCUAAC................................................... len:22 al:3
....................AUUcCACUAGAUGAGCGCUAACU.................................................. len:23 al:2
....................AUUUCACUAGAUGAGCGCcAACU.................................................. len:23 al:1
....................AUUUCACUuGAUGAGCGCUAAC................................................... len:22 al:1
....................AUUUCACUAGAUGAGCGCUAAu................................................... len:22 al:97
....................AUUUCACcAGAUGAGCGCUAAC................................................... len:22 al:5
....................AUUUCACUAGAcGAGCGCUA..................................................... len:20 al:1
.....................UUUCACUAGAUGAGCGCUAACU.................................................. len:22 al:1
.....................UUUCACUAGAUGAGCGCU...................................................... len:18 al:2
.....................UUUCACUAGAUGAGCGCUAACa.................................................. len:22 al:3
.....................UUUCACUAGAUGAGCGCUAAC................................................... len:21 al:4
......................UUCACUAGAUGAGCGCUAACUGUUAUUGUUa........................................ len:31 al:1
......................UUCACUAGAUGAGCGCUA..................................................... len:18 al:1
......................UUCACUAGAUGAGCGCUAACU.................................................. len:21 al:1
......................UUCACUAGAUGAGCGCUAACa.................................................. len:21 al:1
......................UUCACUAGAUGAGCGCUAACUGUUAUUGUU......................................... len:30 al:1
......................UUCACUAGAUGAGCGCUAAu................................................... len:20 al:1
.......................UCACUAGAUGAGCGCUAAC................................................... len:19 al:1
..........................................UGUUAUUGUUCUGCGUUAUCGGUGAAAUUa..................... len:30 al:1
..........................................cGUUAUUGUUCUGCGUUAUCGGUGAAAU....................... len:28 al:1
..........................................UGUUAUUGUUCUGCGUUAUCGGUGAAAcUGU.................... len:31 al:1
..........................................cGUUAUUGUUCUGCGUUAUCGGUGAAAUUGU.................... len:31 al:2
..........................................UGUUAUUGUUCUGCGUUAUCGGUaAAAUUGU.................... len:31 al:1
..........................................UGUUAUUGUUCUGCGUUAUCGGUGAAAUUGa.................... len:31 al:9
..........................................UGUUAUUGUUCUGCGUUAUCGGUGAAAUcGU.................... len:31 al:1
..........................................UGUUAUUGUUCUGCGUUAUCGGUG........................... len:24 al:1
..........................................UGUUAUUGUUCUGCGcUAUCGGUGAAAUUGU.................... len:31 al:2
..........................................UGUUAUUGUUCUGCGUUAUCaGUGAAAUUGU.................... len:31 al:1
..........................................UGUUAUUGUUCUGCGUUAUCGGUGAAAUUGU.................... len:31 al:288
..........................................UuUUAUUGUUCUGCGUUAUCGGUGAAAUUGU.................... len:31 al:1
..........................................UGUUAUUGUUCUGCGUUAUCGGUGAAAUU...................... len:29 al:3
..........................................UGUUAUUGUUCUGCGUUAUCGGUGAAAUUGc.................... len:31 al:58
..........................................UGUUAUUGUUCcGCGUUAUCGGUGAAAUUGU.................... len:31 al:4
..........................................UGUUAUUGUUCUGCGUUAUCGGUGAAgUUGU.................... len:31 al:1
..........................................aGUUAUUGUUCUGCGUUAUCGGUGAAAUUGU.................... len:31 al:1
..........................................UGUUAUUGUUCUGCGUUAUCGGUGAAAUUGg.................... len:31 al:2
..........................................UGUUAUUGUUCUGCGUUAUCGGUGAAAU....................... len:28 al:1
..........................................UGUcAUUGUUCUGCGUUAUCGGUGAAAUUGU.................... len:31 al:1
..........................................UGUUAUUGUUCUGCGUUAUC............................... len:20 al:1
..........................................UGUUAUUGUUCUGCGUUAUCGGcGAAAUUGU.................... len:31 al:3
..........................................UGUUAUcGUUCUGCGUUAUCGGUGAAAUUGU.................... len:31 al:1
..........................................UGUUAUUGUUCUGCGUUAUCGGUGgAAUUGU.................... len:31 al:1
..........................................UGcUAUUGUUCUGCGUUAUCGGUGAAAUUGU.................... len:31 al:3
..........................................UGUUAUUGUcCUGCGUUAUCGGUGAAAUUGU.................... len:31 al:1
..........................................UGUUAcUGUUCUGCGUUAUCGGUGAAAUUGU.................... len:31 al:1
..........................................UGUUAUUGUUCUGCGUUAUCGGUGAAAUUcU.................... len:31 al:1
..........................................UGUUAUUGUUCUGCGUUAUCGGUGAAAUUG..................... len:30 al:10
..........................................UGUUAUUGUUCUGCGUUAUCGGUGAgAUUGU.................... len:31 al:2
...........................................GUUAUUGUUCUGCGUUAUCGGUGAAAUUGU.................... len:30 al:2
.................................................GUUCUGCGUUAUCGGUGAAAUUGU.................... len:24 al:1
..................................................cUCUGCGUUAUCGGUGAAAUUGU.................... len:23 al:5
..................................................UUCUGCGUUAUCGGUGAAAUUGU.................... len:23 al:6
..................................................UUCUGCGUUAUCGGUGAAAUUGUu................... len:24 al:1
..................................................cUCUGCGUUAUCGGUGAAAUU...................... len:21 al:1
...................................................UgUGCGUUAUCGGUGAAAUUGUA................... len:23 al:1
...................................................UCUGCGUUAUCGGUGAAAaU...................... len:20 al:1
...................................................gCUGCGUUAUCGGUGAAAUUGU.................... len:22 al:10
...................................................UCUGCGUUAUCGGgGAAAUU...................... len:20 al:1
...................................................UCUGCGUUAUCGGUGAAAU....................... len:19 al:151
...................................................UCUGCGcUAUCGGUGAAAUU...................... len:20 al:1
...................................................UCUGCGUUAUCGGUGAAAUUGg.................... len:22 al:232
...................................................UCUGCGUUAUCGGUGAgAUUGU.................... len:22 al:78
...................................................UCUGCGUUAUCGGUGAAAUUGc.................... len:22 al:2870
...................................................UCUGCGUUAUCGGUGAAAUcG..................... len:21 al:6
...................................................UCUGCGUUAUCGGUGAAAUUa..................... len:21 al:57
...................................................cCUGCGUUAUCGGUGAAAUU...................... len:20 al:3
...................................................UCUGCGaUAUCGGUGAAAUUGU.................... len:22 al:4
...................................................cCUGCGUUAUCGGUGAAAUUG..................... len:21 al:2
...................................................UCUGCGUUAUaGGUGAAAU....................... len:19 al:1
...................................................UCUGCGUUAUCGGUuAAAUU...................... len:20 al:1
...................................................UuUGCGUUAUCGGUGAAAUUGU.................... len:22 al:39
...................................................UCUGCGUUAUCGGUGgAAUUG..................... len:21 al:1
...................................................UCUGCGUUAUCGGUGAAAg....................... len:19 al:7
...................................................UCUGCGUUAUCGGUGAAAcUGU.................... len:22 al:37
...................................................aCUGCGUUAUCGGUGAAAU....................... len:19 al:1
...................................................UCUGCGUUAUCGGUGAAAUUGUc................... len:23 al:45
...................................................UCUGCGUUAUCGGgGAAAUUGU.................... len:22 al:1
...................................................UCUGCGUUAUCGGUaAAAUUGU.................... len:22 al:1
...................................................UCUGCGUUAUgGGUGAAAUUGU.................... len:22 al:2
...................................................UCUGCGUaAUCGGUGAAAUUGU.................... len:22 al:1
...................................................UCgGCGUUAUCGGUGAAAUUGU.................... len:22 al:3
...................................................UCUGCGUUAUCGGUGAAAUUuU.................... len:22 al:8
...................................................UCUGCGUUAUCGGUGAAAUcGU.................... len:22 al:27
...................................................UuUGCGUUAUCGGUGAAAU....................... len:19 al:1
...................................................UCUGCGUUAUCGGUGAAAUUGUA................... len:23 al:187
...................................................UCcGCGUUAUCGGUGAAAUUGU.................... len:22 al:79
...................................................UCUuCGUUAUCGGUGAAAUUGU.................... len:22 al:5
...................................................UCUGCGUUAUCGGcGAAAU....................... len:19 al:2
...................................................UCUGCGUUAUCGGUGAAgUU...................... len:20 al:2
...................................................UCUGCGUUAUCGGUGAgAU....................... len:19 al:1
...................................................UCUGCGUUAUCGGUGAAAUUGUAc.................. len:24 al:1
...................................................UCUGCGUUAUCGGUGAAAc....................... len:19 al:18
...................................................UCUGCGUUAUCaGUGAAAUUGU.................... len:22 al:17
...................................................UCUGCGUUAUCGGUGAAA........................ len:18 al:21
...................................................UCUGCGUUAUCGGUGAAAUUGU.................... len:22 al:14856
...................................................UCUGCGUUAcCGGUGAAAUUGUA................... len:23 al:1
...................................................UCUGCGUUAUCGGUGAAgUUGU.................... len:22 al:49
...................................................UCUGCGUUAUCGaUGAAAUUGU.................... len:22 al:15
...................................................UCUGCGUUAUCGGUGAAAUa...................... len:20 al:2
...................................................UuUGCGUUAUCGGUGAAAUU...................... len:20 al:3
...................................................UCUGCGcUAUCGGUGAAAUUG..................... len:21 al:1
...................................................UCUGCGUUAUCGGUGAAAUUaUA................... len:23 al:2
...................................................UCUGaGUUAUCGGUGAAAUUGU.................... len:22 al:4
...................................................UCUGCGUUAUCGGUGAAAUc...................... len:20 al:37
...................................................UCUGCGUUAUCGGUGAgAUU...................... len:20 al:1
...................................................UCUGCGUUAUCGGgGAAAUUG..................... len:21 al:2
...................................................UCUGCGUUAUCGGUGAAAUUcU.................... len:22 al:15
...................................................UCUGCGUUAUCGGUGAAAa....................... len:19 al:11
...................................................UCUGCGUUAUCGGUGAAAUUGUu................... len:23 al:236
...................................................UgUGCGUUAUCGGUGAAAUUGU.................... len:22 al:4
...................................................UCUGCGUUAcCGGUGAAAUUGU.................... len:22 al:15
...................................................UCUGCGUUAcCGGUGAAAUUG..................... len:21 al:1
...................................................UCUGCGUUAUCGGcGAAAUUGU.................... len:22 al:55
...................................................UCUGCGUUAUCGGUGAAAUgGU.................... len:22 al:12
...................................................UCUGCGUUAaCGGUGAAAUUGU.................... len:22 al:1
...................................................UuUGCGUUAUCGGUGAAAUUG..................... len:21 al:2
...................................................UCUGCGcUAUCGGUGAAAUUGU.................... len:22 al:41
...................................................aCUGCGUUAUCGGUGAAAUUGU.................... len:22 al:23
...................................................UCUGuGUUAUCGGUGAAAUUGU.................... len:22 al:21
...................................................UCUGCGUUAUaGGUGAAAUUGU.................... len:22 al:3
...................................................UCUGCGUUAUCGGaGAAAUUGU.................... len:22 al:2
...................................................UCUGCGUUAUCGGUGAAAUUu..................... len:21 al:3
...................................................UCaGCGUUAUCGGUGAAAUUGU.................... len:22 al:15
...................................................UCUGCGUUAUCGGUGAAAgUGU.................... len:22 al:3
...................................................UCUGCGUUAUuGGUGAAAUUGUA................... len:23 al:1
...................................................UCUGCGUUAUCGGUGAAAaUGU.................... len:22 al:3
...................................................UCcGCGUUAUCGGUGAAAUU...................... len:20 al:3
...................................................UCUGCGUUAUCGGUGAAuUUGU.................... len:22 al:7
...................................................cCUGCGUUAUCGGUGAAAUUGU.................... len:22 al:63
...................................................UCUGCGUUAUCGGUGgAAUUGUA................... len:23 al:2
...................................................UCUGCGUUAUCGGUGAAAUUGUAA.................. len:24 al:1
...................................................UCUGCGUUAUCGGcGAAAUU...................... len:20 al:1
...................................................UCUGCGUUAUCGGUGAAAUgG..................... len:21 al:2
...................................................UCUGCGUUAUCGGUGAAu........................ len:18 al:2
...................................................UCUGCGUcAUCGGUGAAAUU...................... len:20 al:1
...................................................UCaGCGUUAUCGGUGAAAUU...................... len:20 al:1
...................................................UCcGCGUUAUCGGUGAAAUUG..................... len:21 al:3
...................................................aCUGCGUUAUCGGUGAAAUUG..................... len:21 al:1
...................................................UCUGCGgUAUCGGUGAAAUUGU.................... len:22 al:5
...................................................UCUGCGUUAUCGGUGAAcUUGU.................... len:22 al:3
...................................................UCUGCGUUAgCGGUGAAAUUGU.................... len:22 al:2
...................................................UCcGCGUUAUCGGUGAAAU....................... len:19 al:1
...................................................UaUGCGUUAUCGGUGAAAUUG..................... len:21 al:2
...................................................UCUGCGUUAUCGGUuAAAUUGU.................... len:22 al:1
...................................................UCUGCGUUAUCGGUGAAAUUGcA................... len:23 al:12
...................................................UCUGCGUUAUCGGUGAAAcU...................... len:20 al:3
...................................................UCUGCGUUAUCGuUGAAAUUGU.................... len:22 al:2
...................................................UCUGCGUUAUCGGUGAAAUU...................... len:20 al:279
...................................................UCUGCGUUAUCGGUGAAAUUGUAu.................. len:24 al:16
...................................................UCUGCGUUgUCGGUGAAAU....................... len:19 al:2
...................................................UCUGCGUUgUCGGUGAAAUUG..................... len:21 al:2
...................................................UCUGCGUUAUCGGUGcAAUUGU.................... len:22 al:2
...................................................UCUGCGUUAUCGGUaAAAUUGUA................... len:23 al:1
...................................................UCUaCGUUAUCGGUGAAAUUGU.................... len:22 al:11
...................................................UCUGCGUUAUCGGUGAAgU....................... len:19 al:2
...................................................UCgGCGUUAUCGGUGAAAUUG..................... len:21 al:1
...................................................UCUGCGUUAUCGGUGAAgUUGUA................... len:23 al:1
...................................................UaUGCGUUAUCGGUGAAAUUGU.................... len:22 al:4
...................................................UCUGCcUUAUCGGUGAAAUUG..................... len:21 al:1
...................................................UCUGCGUUAUCGGUGAAAUUGa.................... len:22 al:327
...................................................UCUGCGUUAUCGGUGgAAUUGU.................... len:22 al:70
...................................................aCUGCGUUAUCGGUGAAAUU...................... len:20 al:1
...................................................UCUGCGUUAUuGGUGAAAUUGU.................... len:22 al:15
...................................................UCUGCGUUAUCGGUGAAAcUG..................... len:21 al:2
...................................................UCUGCGUUAUCGGUGAAAUUGUuA.................. len:24 al:6
...................................................UCUGCGUUAUCGGUGAAAUaGU.................... len:22 al:3
...................................................UCUGCGUUAcCGGUGAAAU....................... len:19 al:1
...................................................UCUGCGUUAUCGGUGAgAUUG..................... len:21 al:4
...................................................UCUGCGUUAUCGGUGAAgUUG..................... len:21 al:2
...................................................UCUGCGUUAUCGGUGAcAUUGU.................... len:22 al:1
...................................................UCUGCGUUgUCGGUGAAAUUGU.................... len:22 al:14
...................................................UCUGuGUUAUCGGUGAAAUU...................... len:20 al:1
...................................................UCUGCGUUAUCGGUGAAAUUc..................... len:21 al:4
...................................................UCUGCGUUAUCGGUGuAAUUGU.................... len:22 al:6
...................................................UCUGCGUUAUCGGUGAAAUUG..................... len:21 al:563
...................................................UCUGCcUUAUCGGUGAAAUUGU.................... len:22 al:2
...................................................UCUGCuUUAUCGGUGAAAUUGU.................... len:22 al:1
...................................................UCUGCGUcAUCGGUGAAAUUGU.................... len:22 al:21
...................................................UCUGCGUUAUCGGUGAAAUUaU.................... len:22 al:16
...................................................UCUGCGUUAUCGGUGAAAUUGUAAu................. len:25 al:1
...................................................UCUGCaUUAUCGGUGAAAUUGU.................... len:22 al:18
...................................................UCUGCGUUAUCGGUGAAAcUGUA................... len:23 al:1
...................................................UCUGCGUUAUCGGUGcAAUU...................... len:20 al:1
...................................................UCUGCGUUAUCGGUGAuAUUGU.................... len:22 al:1
...................................................UCUGCGUUAUCGGUGAAAUUGUg................... len:23 al:8
....................................................CUGCGUUAUCGGUGAAAUUGc.................... len:21 al:3
....................................................uUGCGUUAUCGGUGAAAUUGU.................... len:21 al:1
....................................................CUGCGUUAUCGGUGAAAUUG..................... len:20 al:2
....................................................CUGCGUUAUCGGUGAAAUU...................... len:19 al:1
....................................................CUGCGUUAUCGGUGAAAUUGU.................... len:21 al:11
.....................................................UGCGUUAUCGGUGAAAUUGc.................... len:20 al:1
.....................................................UGCGUUAUCGGUGgAAUUGU.................... len:20 al:1
.....................................................UGCGUUAUCGGUGAAAUU...................... len:18 al:1
.....................................................UGCGUUAUCGGUGAAAUUGU.................... len:20 al:17
.....................................................UGCGUUAUCGGUGAAAUUG..................... len:19 al:1
.....................................................UGCGUUAUCGGUGAAAUUGUA................... len:21 al:1
......................................................GCGUUAUCGGUGAAAUUGU.................... len:19 al:2
......................................................GCGUUAUCGGUGAAAUUGc.................... len:19 al:1
.......................................................CGUUAUCGGUGAAAUUGc.................... len:18 al:1