Genome: /home/shared/8TB_HDD_01/sam/gitrepos/deep-dive/D-Apul/data/Amil/ncbi_dataset/data/GCF_013753865.1/GCF_013753865.1_Amil_v2.1_genomic.fa
Alignments: /home/shared/8TB_HDD_01/sam/gitrepos/deep-dive/D-Apul/output/13.2-Apul-sRNAseq-ShortStack-31bp-fastp-merged/ShortStack_out/merged_alignments.bam
Location: NC_058067.1:16118215-16118311 minus
Post-script file name: /home/shared/8TB_HDD_01/sam/gitrepos/deep-dive/D-Apul/output/13.2-Apul-sRNAseq-ShortStack-31bp-fastp-merged/ShortStack_out/strucVis/Cluster_1898.ps
Locus Name: Cluster_1898
ACAGUUUCUGUCCGUGGCUCAAAAAUGUCGGUUGCUUAAGCUCUCUAAUAGUAAGCUCAAGCACACGACGUUUUUGAGCCACGGGCGGCAAAAGCAA
...(((((((((((((((((((((((((((..(((((.((((..((...))..)))).)))))..)))))))))))))))))))))))...)))).. (-55.20)
.CAGUUUCUGUCCGUGGCUC............................................................................. len:19 al:3
.CAGUUUCUGcCCGUGGCUC............................................................................. len:19 al:1
..AGUUUCUGUCCGUGGCUu............................................................................. len:18 al:2
...GUUUCUGUCCGUGGCUCA............................................................................ len:18 al:1
...................CuAAAAUGUCGGUUGCUUAAGCU....................................................... len:23 al:2
....................cAAAAUGUCGGUUGCUUA........................................................... len:18 al:1
....................uAAAAUGUCGGUUGCUUAAGCUCUCUAAU................................................ len:29 al:1
....................cAAAAUGUCGGUUGCUUAAGCU....................................................... len:22 al:22
....................AAAAAUGUCGGUUGCUUg........................................................... len:18 al:1
....................uAAAAUGUCGGUUGCUUA........................................................... len:18 al:463
....................AAAAAUGUCGGUUGCUUAAGCa....................................................... len:22 al:3
....................uAAAAUGUCGGUUGCUUAA.......................................................... len:19 al:12
....................AAAAAUGUCGGUUGCUUAAGCcC...................................................... len:23 al:1
....................uAAAAUGUCGGUUGCUUAAG......................................................... len:20 al:35
....................uAAAAUGUCGGUUGCUUAAGC........................................................ len:21 al:243
....................uAAAAUGUCGGUUGCUUAAGCUCU..................................................... len:24 al:17
....................uAAAAUGUCGGUUGCUUAAGCU....................................................... len:22 al:7452
....................cAAAAUGUCGGUUGCUUAAGC........................................................ len:21 al:2
....................AAAAAUGUCGGUUGCUUAAGCU....................................................... len:22 al:7
....................gAAAAUGUCGGUUGCUUAAGC........................................................ len:21 al:2
....................uAAAAUGUCGGUUGCUUAAGCUCUCU................................................... len:26 al:2
....................uAAAAUGUCGGUUGCUUAAGCUC...................................................... len:23 al:15
....................gAAAAUGUCGGUUGCUUAAGCU....................................................... len:22 al:2
....................uAAAAUGUCGGUUGCUUAAGCUCUCUAAUA............................................... len:30 al:2
.....................AAAAUGUCGGUUGCUUgAGC........................................................ len:20 al:3
.....................AAAAUGUCGGUUGCUUAAGCUuU..................................................... len:23 al:1
.....................AAAAUGUCGGUUGCUUAAGCUCa..................................................... len:23 al:13
.....................AAAAUGUCGGUUGCUUgAGCU....................................................... len:21 al:15
.....................AAAAUGUCGGUUGCUUAAGCUaU..................................................... len:23 al:2
.....................AAAAUGUCGGUUGCUUAAGCUCc..................................................... len:23 al:15
.....................AAAAUGUCGGUUGCUUAAGCUCUu.................................................... len:24 al:1
.....................AAAAUGUCGGUUGCUUAAGCUu...................................................... len:22 al:4
.....................AAAAUGUCGGUUGCUUAAGCUC...................................................... len:22 al:4
.....................AAAAUGUCGGUUGCUUAAGCUCU..................................................... len:23 al:34
.....................AAAAUGUCGGUUGCUUAAGCcCU..................................................... len:23 al:2
.....................AAAAUGUCGGUUGCUUAAGCa....................................................... len:21 al:8
.....................AAAAUGUCGGUUGCUUgAGCUCU..................................................... len:23 al:25
.....................AAAAUGUCGGUUGCUUAAGCUaUC.................................................... len:24 al:1
.....................AAAAUGUCGGUUGCUUAAGCUCg..................................................... len:23 al:2
.....................uAAAUGUCGGUUGCUUAAGCU....................................................... len:21 al:3
.....................AAAAUGUCGGUUGCUUAAGCU....................................................... len:21 al:36
.....................AAAAUGUCGGUUGCUUAA.......................................................... len:18 al:1
.....................AAAAUGUCGGUUGCUUAAGCUCUa.................................................... len:24 al:1
.....................AAAAUGUCGGUUGCUUgAGCUC...................................................... len:22 al:7
.....................AAAAUGUCGGUUGCUUAAGCc....................................................... len:21 al:11
.....................AAAAUGUCGGUUGCUUAAGC........................................................ len:20 al:4
......................AAAUGUCGGUUGCUUAAGCUCUu.................................................... len:23 al:1
......................AAAUGUCGGUUGCUUAAGCa....................................................... len:20 al:1
......................AAAUGUCGGUUGCUUAAGCU....................................................... len:20 al:4
......................AAAUGUCGGUUGCUUAAGCc....................................................... len:20 al:4
......................AAAUGUCGGUUGuUUAAGCU....................................................... len:20 al:1
......................AAAUGUCGGUUGCUUAAGCUCa..................................................... len:22 al:1
......................AAAUGUCGGUUGCUUAAGCUCU..................................................... len:22 al:3
......................uAAUGUCGGUUGCUUAAGCU....................................................... len:20 al:2
.......................AAUGUCGGUUGCUUAAGCU....................................................... len:19 al:1
.......................AAUGUCGGUUGCUUgAGCU....................................................... len:19 al:3
.......................AAUGUCGGUUGCUUAAGCa....................................................... len:19 al:1
.......................AAUGUCGGUUGCUUAAGCUCU..................................................... len:21 al:2
.......................AAUGUCGGUUGCUUAAGC........................................................ len:18 al:1
.......................AAUGUCGGUUGCUUAAGCc....................................................... len:19 al:2
........................AUGUCGGUUGCUUAAGCUCc..................................................... len:20 al:1
........................AUGUCGGUUGCUUAAGCUCU..................................................... len:20 al:1
.........................UGUCGGUUGCUUAAGCUCUCU................................................... len:21 al:1
............................................CUAAUAGUAAGCUCAAGCACACGACGUUUU....................... len:30 al:1
............................................CUAAUAGUAAGCUCAAGCACACGACGg.......................... len:27 al:1
..............................................AAUAGUAAGCUCAAGCACA................................ len:19 al:1
...................................................UAAGCUCAAGCACACGACGUUc........................ len:22 al:1
...................................................UAAGCUCAAGCACACGACGUUU........................ len:22 al:1
......................................................GCUCAAGCACACGACGUUUUg...................... len:21 al:1
......................................................GCUCAAGCACACGACGUUUU....................... len:20 al:2
......................................................GCUCAAGCACACGACGUUUUgG..................... len:22 al:2
......................................................GCUCAAGCACACGACGUUUc....................... len:20 al:1
.......................................................CUCAAGCACACGACGUUUUgGA.................... len:22 al:6
.......................................................CUCAAGCACACGACGUUU........................ len:18 al:1