Genome: /home/shared/8TB_HDD_01/sam/gitrepos/deep-dive/D-Apul/data/Amil/ncbi_dataset/data/GCF_013753865.1/GCF_013753865.1_Amil_v2.1_genomic.fa
Alignments: /home/shared/8TB_HDD_01/sam/gitrepos/deep-dive/D-Apul/output/13.11-Apul-sRNAseq-ShortStack-R1-reads-cnidarian_miRBase/ShortStack_out/merged_alignments.bam
Location: NC_058074.1:2966501-2966594 plus
Post-script file name: /home/shared/8TB_HDD_01/sam/gitrepos/deep-dive/D-Apul/output/13.11-Apul-sRNAseq-ShortStack-R1-reads-cnidarian_miRBase/ShortStack_out/strucVis/Cluster_7306.ps
Locus Name: Cluster_7306
UUCUGUUUACGGUUUAACUGGGUAGCAUAACAUUGUAAGAGAUCUUUAAAGGUCUCUUACAUUGUUGUGCUGCCUGGAAAAACUGAACUGACUG
.((.(((..((((((..(((((((((((((((.((((((((((((....)))))))))))).)))))))))))))))..))))))))).))... (-47.20)
......................UAGCAUAACAUUGUAAGAGAc................................................... len:21 al:2
......................UAGCAUAACuUUGUAAGAGAUCU................................................. len:23 al:1
......................UAGCAUAACAUUGUAAGAGAUuUU................................................ len:24 al:1
......................UAGCAUAACAUUGUAAGAGgUCUU................................................ len:24 al:3
......................UAGCAUAACAUcGUAAG....................................................... len:17 al:3
......................UAGCAUAACAUUGUAAGAGAUCc................................................. len:23 al:841
......................UAGCAUAACAUUGUAAGAGAU................................................... len:21 al:7
......................UcGCAUAACAUUGUAAGAGAUCU................................................. len:23 al:7
......................UAGCAUAACAUUGUAAc....................................................... len:17 al:1
......................UAGCAUAACAUUGUAAGAGAUCUUU............................................... len:25 al:140
......................cAGCAUAACAUUGUAAG....................................................... len:17 al:2
......................UAGCAUAACAUUGUAAGAGA.................................................... len:20 al:3
......................UAGCAUAACAUUGaAAG....................................................... len:17 al:1
......................UAGCAUAACAcUGUAAGAGAUCU................................................. len:23 al:8
......................UAGCAgAACAUUGUAAGAGAUC.................................................. len:22 al:1
......................UAGCAUAACAUUGUgAGAGAUCUUU............................................... len:25 al:2
......................UgGCAUAACAUUGUAAGAGAUCUUU............................................... len:25 al:1
......................UAGCuUAACAUUGUAAGAGAUCU................................................. len:23 al:3
......................UAGCAUAACAUUGUAgGAGAUCU................................................. len:23 al:16
......................UAGCAUAACAUUGUAcGAGAUC.................................................. len:22 al:1
......................UAGCAUAACcUUGUAAGAGAUCU................................................. len:23 al:1
......................UAGCAUAACgUUGUAAGAGAUCUUUAAA............................................ len:28 al:1
......................UAGCAUAACAUUGUAAaAGAUCU................................................. len:23 al:1
......................UAGCAUAACAUaGUAAGAGAUCU................................................. len:23 al:3
......................UAGCAUAACAUUGUAAGAGAgCUU................................................ len:24 al:1
......................UAGCAUAACAUUGUAAGAGAUCUUg............................................... len:25 al:3
......................cAGCAUAACAUUGUAAGAGAUCU................................................. len:23 al:24
......................gAGCAUAACAUUGUAAG....................................................... len:17 al:1
......................UAGCAUAACAUUGUAAGAGcUCU................................................. len:23 al:2
......................UgGCAUAACAUUGUAAGAGAUCU................................................. len:23 al:23
......................UAGCAUAACAUUGUAAGAGAUCaU................................................ len:24 al:1
......................aAGCAUAACAUUGUAAGAGAUCUU................................................ len:24 al:1
......................UAGCAUAACAUUGcAAGAGAUCU................................................. len:23 al:12
......................UAGCAUAACAUUGUAAGAGg.................................................... len:20 al:1
......................UAGCAUAACAUUGUAuGAGAUCU................................................. len:23 al:3
......................UAGCAUAACAUUGUAAGAGAUCg................................................. len:23 al:159
......................UAGCAUAACAUUGUAAGAGAUu.................................................. len:22 al:14
......................UAGCAUAACAUUGUAAGAGAUCU................................................. len:23 al:5039
......................UAGCAUAACAUcGUAAGAGAUCU................................................. len:23 al:19
......................UAGCAUAACAUUGUAAGAuAUCU................................................. len:23 al:2
......................UAGCAUAAuAUUGUAAGAGAUCU................................................. len:23 al:4
......................UAGCAUAACAUaGUAAGAGAUCUUUAAAGG.......................................... len:30 al:1
......................UAGCAUAACAUUGUAAGAGAcCUU................................................ len:24 al:1
......................gAGCAUAACAUUGUAAGAGAUC.................................................. len:22 al:1
......................UAGuAUAACAUUGUAAGAGAUCU................................................. len:23 al:10
......................UAGCAUAACAUUGUAAGAGAUCUcU............................................... len:25 al:4
......................UAGCAUAACAcUGUAAG....................................................... len:17 al:2
......................UAGCAUAACAUUGUAAGgGAUCU................................................. len:23 al:29
......................UAGCAUAACgUUGUAAGAGAUCU................................................. len:23 al:13
......................UAGCAUAACAUUGUAAGAGAUCUU................................................ len:24 al:334
......................UAGCAUAACAUUGUAAGAGAUCUg................................................ len:24 al:3
......................UAGCAUAACAUUGUAAGAGAUCUUUuA............................................. len:27 al:6
......................UAGuAUAACAUUGUAAG....................................................... len:17 al:1
......................UAGCAUAACAUUGUAuGAGAUCUUU............................................... len:25 al:1
......................UAGCAUAACAUUGcAAGAGAUCUU................................................ len:24 al:1
......................UAGCAUAACAUgGUAAGAGAUCU................................................. len:23 al:1
......................UAaCAUAACAUUGUAAGAGAUCU................................................. len:23 al:4
......................UAGCAUAACAUUuUAAGAGAUCU................................................. len:23 al:1
......................UAGCAUAACAUUGUAAGAGAUCUaU............................................... len:25 al:22
......................UAGCAUAACAUUGUAAGAGAUCUUUg.............................................. len:26 al:1
......................UAGCAcAACAUUGUAAGAGAUCU................................................. len:23 al:13
......................UAGCAUAACAUUGUAAGAGAUuU................................................. len:23 al:6
......................UAGCAUAACAUUGUAAGAaAUCU................................................. len:23 al:1
......................UuGCAUAACAUUGUAAGAGAUCU................................................. len:23 al:10
......................UAGCAUgACAUUGUAAGAGAUCU................................................. len:23 al:8
......................UAGCAUAACAUUGUAAGgGAUCUU................................................ len:24 al:1
......................UAGCAUAACAUUGUAAGAGAUCUUa............................................... len:25 al:9
......................UAGCAUAACAUUGUgAG....................................................... len:17 al:1
......................UAGCAUAgCAUUGUAAGAGAUCU................................................. len:23 al:55
......................cAGCAUAACAUUGUAAGAGAUCUU................................................ len:24 al:1
......................aAGCAUAACAUUGUAAGAGAUCU................................................. len:23 al:8
......................UAGCAUAACAUUGUuAGAGAUCU................................................. len:23 al:1
......................UAGCAUAACAUUGUAAu....................................................... len:17 al:1
......................UAGCAUAACAUUaUAAGAGAUCU................................................. len:23 al:2
......................UAGCAUAACAUUGUAAGAGAUCUUUu.............................................. len:26 al:30
......................UAGCAUAACAUUGUAAGAGAUCUc................................................ len:24 al:35
......................UAGCAUAACAUUGUAAGA...................................................... len:18 al:3
......................UAGCAUAgCAUUGUAAGAGAUCUUU............................................... len:25 al:1
......................UAGaAUAACAUUGUAAGAGAUCU................................................. len:23 al:2
......................aAGCAUAACAUUGUAAG....................................................... len:17 al:1
......................UAGCAUAACAUUGUcAGAGAUCU................................................. len:23 al:1
......................UgGCAUAACAUUGUAAGAGAUCUU................................................ len:24 al:3
......................UAGCAUAACAUUGUAAGAGAcCU................................................. len:23 al:61
......................UAGCAUAACAUUGUAAGAGAUCUUUAu............................................. len:27 al:4
......................UAGCAUAACAUUGUAAGAGAUa.................................................. len:22 al:6
......................UAGCAUAACAUUGUAAGAGAgC.................................................. len:22 al:1
......................UAGCAUAACAUUGUAAGAGAUCUUUAAAGu.......................................... len:30 al:1
......................UAGCAUAACAUUGUAAGAGAUCUUaA.............................................. len:26 al:2
......................UAGCAUAACAaUGUAAGAGAUCU................................................. len:23 al:2
......................UAGCAUAACAUcGUAAGAGAUCUU................................................ len:24 al:3
......................UAGCAUAACAgUGUAAGAGAUCU................................................. len:23 al:3
......................UAGCAUAACAUUGUAAGAGAUC.................................................. len:22 al:209
......................UAGCAUAACAUUGUAAGAGAcCUUU............................................... len:25 al:1
......................UAGCAUAgCAUUGUAAGAGAUC.................................................. len:22 al:5
......................UAGCAUAACAUUGUAAuAGAUCUU................................................ len:24 al:1
......................UAGCAUAACAUUGUAAGAGAUCcU................................................ len:24 al:13
......................UAGCAaAACAUUGUAAGAGAUCU................................................. len:23 al:5
......................UAGCAUAAaAUUGUAAGAGAUCU................................................. len:23 al:2
......................UAGCAUAACAUUGUAAGAGAUCUaUA.............................................. len:26 al:1
......................UAGCAUAACAUUGUAAGAGAUCUUc............................................... len:25 al:22
......................UAGCAUAACAUUGUAAGAGgUCU................................................. len:23 al:30
......................cAGCAUAACAUUGUAAGAGAUC.................................................. len:22 al:4
......................UAaCAUAACAUUGUAAGAGAUCUU................................................ len:24 al:1
......................UAGCAUAACAUUGUAAG....................................................... len:17 al:351
......................UAGCAUAACAUUGUAAGAGAUaU................................................. len:23 al:3
......................UAGCAUAACAUUGUAgG....................................................... len:17 al:6
......................UAGCAUAACAUUGUAAGAGAUCUa................................................ len:24 al:21
......................gAGCAUAACAUUGUAAGAGAUCUU................................................ len:24 al:1
......................UAGCAUAACAUUGUAcGAGAUCU................................................. len:23 al:6
......................UAGCAUAuCAUUGUAAGAGAUCU................................................. len:23 al:2
......................UAGCAgAACAUUGUAAGA...................................................... len:18 al:3
......................UAGCAUAgCAUUGUAAG....................................................... len:17 al:9
......................UAGCAgAACAUUGUAAGAGAUCU................................................. len:23 al:1
......................UAGCAUAACAUUGaAAGAGAUCU................................................. len:23 al:1
......................UAGCAUAACAUUGUAAGAGu.................................................... len:20 al:1
......................UuGCAUAACAUUGUAAGAGAUC.................................................. len:22 al:1
......................UAGCAUAACAUUGUAAGAGAaCU................................................. len:23 al:4
......................UAGCAUAACAUUGUAAGAGAUCa................................................. len:23 al:624
......................UAGCAUAgCAUUGUAAGAGAUCUU................................................ len:24 al:2
......................UAGCAUAACAUUGUAAGAGAUCUUUAAAGG.......................................... len:30 al:1
......................UAGCAUAACAUUGUAAGuGAUCU................................................. len:23 al:2
......................UAGCAUAACAUUGUAAGAGuUCU................................................. len:23 al:3
......................UAGCAUuACAUUGUAAGAGAUC.................................................. len:22 al:1
......................UAGCAUAACAUUGUAAGAGAUCUUUA.............................................. len:26 al:5
......................UAGCgUAACAUUGUAAGAGAUCU................................................. len:23 al:18
......................UAGCAUAACAUUGUAAGAGAUCUUUc.............................................. len:26 al:2
......................UAGCAUAACgUUGUAAGAGAUCUUU............................................... len:25 al:2
......................UAGCAUAACAUUGUgAGAGAUCU................................................. len:23 al:15
......................UAGCAUAACAUcGUAAGAGAUC.................................................. len:22 al:3
......................UAGCAUAACAUUGUAcG....................................................... len:17 al:1
......................UAGCgUAACAUUGUAAGAGAUCUUU............................................... len:25 al:1
......................gAGCAUAACAUUGUAAGAGAUCU................................................. len:23 al:17
......................UAGCAUAACAUUGUAAGAGAUCUUUAuA............................................ len:28 al:2
......................UAGCAUAACAUUGUAAGAGAgCU................................................. len:23 al:8
......................UAGCAUAgCAUUGUAAGAGAU................................................... len:21 al:1
......................UuGCAUAACAUUGUAAGAGAUCUU................................................ len:24 al:1
.......................AGCAUAACAUUGUAAGAGAUCU................................................. len:22 al:8
.......................AGCAUAACAUUGUAAGAGAUuU................................................. len:22 al:1
.......................AGCAUAACAUUGUAAGAGAUCa................................................. len:22 al:3
........................GCAUAACAUUGUAAGAGAUCU................................................. len:21 al:1
........................GCAUAACAUcGUAAGAGAUCU................................................. len:21 al:1
........................GCAUAACAUUGUAAGAGAUCc................................................. len:21 al:1
.........................CAUAACAUUGUAAGAGAUCU................................................. len:20 al:2
..........................AUAgCAUUGUAAGAGAUCU................................................. len:19 al:1
..........................AUAACAUUGUAAGAGAUCU................................................. len:19 al:5
..........................AUAACAUUGUAAGAGAUCc................................................. len:19 al:1
............................................UUUAAAGGUCUCUUACAUUGUUGUGCUGCa.................... len:30 al:1
............................................UUUAAAGGUCUCUUACAUUGUUGUGCUGCu.................... len:30 al:2
.............................................UUAAAGGUCUCUUACAUUGUUGUGCUGCa.................... len:29 al:2
.............................................UUAAAGGUCUCUUACAUUGUUGUGCUGCu.................... len:29 al:2
.............................................UUAAAGGUCUCUUACAUUGUUGUGCUGCC.................... len:29 al:6
.............................................UUAAAGGUCUCUUACAUUGUUGUGCUGCCa................... len:30 al:1
...................................................GUCUCUUACAUUGUUGUGCcGC..................... len:22 al:1
...................................................GUCUCcUACAUUGUUGUGCUGCC.................... len:23 al:3
...................................................GUCUCUUACAUUGUUGUGCUGCuU................... len:24 al:1
...................................................GUCUCUUACAUUGUUGUGCUGCCUu.................. len:25 al:11
...................................................GUCUCUUACAUUGUUGUGCUGCCUa.................. len:25 al:2
...................................................GUCUCUUACAUUGUUGUGCUcCCU................... len:24 al:1
...................................................aUCUCUUACAUUGUUGUGCUGC..................... len:22 al:1
...................................................GUCUCgUACAUUGUUGUGCUGCC.................... len:23 al:1
...................................................GUCUCUUACAUUGUUGUGCUGCCUc.................. len:25 al:1
...................................................GUCUCUUACAUUGUUGUGCUGaC.................... len:23 al:2
...................................................GUCUCUUACAUUGUUGUGCUGu..................... len:22 al:31
...................................................GUCUCUUACAUUGUUGUGCUGCC.................... len:23 al:273
...................................................GUCUCUUACAUUGUUGUGCUuCCU................... len:24 al:1
...................................................GUCUCUUACAUUGUUGUGCUa...................... len:21 al:1
...................................................GUCcCUUACAUUGUUGUGCUGCC.................... len:23 al:2
...................................................GUCUCUUACAUUGUUGUGCUGCu.................... len:23 al:215
...................................................GUCUCUUACAUUGUUGUGuUGCC.................... len:23 al:1
...................................................aUCUCUUACAUUGUUGUGCUGCCU................... len:24 al:1
...................................................GUCUCUUACgUUGUUGUGCUGCC.................... len:23 al:1
...................................................GUCcCUUACAUUGUUGUGCUGC..................... len:22 al:1
...................................................GUCUCUUACAUUGUUGUGCUGCCc................... len:24 al:12
...................................................GUCUCUUACAUUGUUGUGCUGa..................... len:22 al:6
...................................................GUCUCUUgCAUUGUUGUGCUGC..................... len:22 al:2
...................................................GUCUCUUACAUUGUUGUGCUG...................... len:21 al:18
...................................................GUCUCUUACAUUGUUGUGCUaCC.................... len:23 al:1
...................................................GUCUCUUACAUUGcUGUGCUGCC.................... len:23 al:3
...................................................GUCUCUUACAUUGUUGUGCc....................... len:20 al:1
...................................................GUCUCUUACAUUGUUGUGCUGCCU................... len:24 al:42
...................................................aUCUCUUACAUUGUUGUGCUGCC.................... len:23 al:2
...................................................GUCUCUUACAUUGUUGUGCg....................... len:20 al:1
...................................................GUCUCUUACAUUGUUGUGCUGCg.................... len:23 al:12
...................................................GUCUCUUACAUUGUUGUGCUGC..................... len:22 al:93
...................................................GUCUCUUACAUUGUUGUGCUGCa.................... len:23 al:138
...................................................GUCUCUUACAUUGUUGUGCUGCCg................... len:24 al:7
...................................................GUCUCUUACAUUGUUGcGCUGCC.................... len:23 al:1
...................................................GUCUCUUACAUUGUUGUGCU....................... len:20 al:6
...................................................aUCUCUUACAUUGUUGUGCUG...................... len:21 al:1
...................................................GUCUCUUACAUUGUUGUGCaG...................... len:21 al:1
...................................................GUCUCUUACAUUGUUGUGC........................ len:19 al:1
...................................................GUCUCUUACAUUGUUGUGCUGCCa................... len:24 al:98
...................................................GUCUCUUACAUUGUUGUGCUGuC.................... len:23 al:2
...................................................GUCUCUUACAUUGUUGUGCUGg..................... len:22 al:2
...................................................GUCUCUUACAUcGUUGUGCUGCC.................... len:23 al:2
...................................................GUCUCUUACAUUGUUGUGCUGCaU................... len:24 al:2
...................................................GUCUCUUACAUUGUcGUGCUGCC.................... len:23 al:1
...................................................GcCUCUUACAUUGUUGUGCUGCC.................... len:23 al:3
....................................................UCUCUUACAUUGUUGUGCUGCCc................... len:23 al:5
....................................................UCUCUUACAUUGUUGUGCUGa..................... len:21 al:5
....................................................UCUCUUACAUUGUUGUGCc....................... len:19 al:2
....................................................UCaCUUACAUUGUUGUGCUGCC.................... len:22 al:2
....................................................UCUCUUACAUUGUUGUGCUcCCU................... len:23 al:1
....................................................UCUCUUACAUUGUUGUGCgGC..................... len:21 al:1
....................................................UCcCUUACAUUGUUGUGCUGCCU................... len:23 al:2
....................................................UCUCUUACAUUGUUGUaCUGCC.................... len:22 al:1
....................................................UCUCUUAuAUUGUUGUGCUGCC.................... len:22 al:1
....................................................aCUCUUACAUUGUUGUGCUGCC.................... len:22 al:2
....................................................UCUCUUACAUUGUUGUGCUGC..................... len:21 al:38
....................................................UCUCUUACAUUGUUGUGCUGCuU................... len:23 al:1
....................................................UCUCUUACAUUGUUGUGCUu...................... len:20 al:2
....................................................UCUCUUAuAUUGUUGUGCUGC..................... len:21 al:1
....................................................UCUCUUACAUUGUcGUGCUGCC.................... len:22 al:4
....................................................UCUCUUACAUUGUUGUGCUGCC.................... len:22 al:389
....................................................gCUCUUACAUUGUUGUGCUGC..................... len:21 al:1
....................................................UCUCUUACAUUGUUGUGCcGCC.................... len:22 al:4
....................................................UCUCUUACAUUGUUGUGCUGaC.................... len:22 al:3
....................................................UCUCUUACAUUGUUGUGCUG...................... len:20 al:16
....................................................UCUCUUACAUUGUUaUGCUGCC.................... len:22 al:1
....................................................UCUCUUACAUaGUUGUGCUGCC.................... len:22 al:1
....................................................UCUCUUACAUUGUUGUGCUGCCg................... len:23 al:8
....................................................UCUCUUACAUUGUUGUGCUaCC.................... len:22 al:4
....................................................UCUCUUACAUUGUUGUGCUGCCUc.................. len:24 al:1
....................................................UCUCUUACAUUGUUGUGCUGCa.................... len:22 al:195
....................................................UCUCUUACAUUGUUGUGCUGCu.................... len:22 al:295
....................................................UCUCUUACAUUGUUGUGCUGCg.................... len:22 al:11
....................................................UCUCUUACAUUGUUGUGCUGCCU................... len:23 al:37
....................................................UCUCUUACAUUGUUGUGgUGC..................... len:21 al:2
....................................................UCUCUUACAUUGUUGUGCUGCCa................... len:23 al:94
....................................................UCUCUUACAUcGUUGUGCUGCC.................... len:22 al:2
....................................................UaUCUUACAUUGUUGUGCUGCC.................... len:22 al:3
....................................................UCUCUUAaAUUGUUGUGCUGCC.................... len:22 al:1
....................................................UCUCUUACgUUGUUGUGCUGCC.................... len:22 al:1
....................................................UCUCUUACAUUGUUGUGCU....................... len:19 al:5
....................................................UCUCUUACAUUGUUGUGCUGCCUu.................. len:24 al:5
....................................................UCUCUUACAUUGUUGUGCUcC..................... len:21 al:2
....................................................UCUCUUACAUUGUUGUGCUa...................... len:20 al:6
....................................................UCUCUUACAUUGcUGUGCUGCC.................... len:22 al:4
....................................................UCUCUUACAUUGUUGUGCUGuC.................... len:22 al:1
....................................................UCUCUUACAUUGUUGUGCUGu..................... len:21 al:16
....................................................UCcCUUACAUUGUUGUGCUGCC.................... len:22 al:4
.....................................................CUCUUACAUUGUUGUGCUGu..................... len:20 al:2
......................................................UCUUACAUUGUUGUGCUGCCa................... len:21 al:1
...........................................................CAUUGUUGUGCUGCu.................... len:15 al:3
...........................................................CAUUGUUGUGCUGCC.................... len:15 al:1