Genome: /home/shared/8TB_HDD_01/sam/gitrepos/deep-dive/D-Apul/data/Amil/ncbi_dataset/data/GCF_013753865.1/GCF_013753865.1_Amil_v2.1_genomic.fa
Alignments: /home/shared/8TB_HDD_01/sam/gitrepos/deep-dive/D-Apul/output/13.11-Apul-sRNAseq-ShortStack-R1-reads-cnidarian_miRBase/ShortStack_out/merged_alignments.bam
Location: NC_058070.1:2184956-2185050 minus
Post-script file name: /home/shared/8TB_HDD_01/sam/gitrepos/deep-dive/D-Apul/output/13.11-Apul-sRNAseq-ShortStack-R1-reads-cnidarian_miRBase/ShortStack_out/strucVis/Cluster_4131.ps
Locus Name: Cluster_4131
UUGCAAGUUCAGCUUGGAGUAAGAACACCCAAAAUAGCUGAGGAUUUUGUUUCCUGCUAUAUUGAGUGUUCUAACUCCUGCGAGAGCCUAGUGCA
.((((.((((.((..(((((.(((((((.(((.(((((..((((.......))))))))).))).))))))).))))).))..))))....)))) (-37.50)
..............UaGAGUAAGAACACC.................................................................. len:15 al:1
...................UAAGAACACCCAAAAUAGCUGAGGA................................................... len:25 al:9
...................UAAGAACACCCAAAAUAGCUGAGGAUU................................................. len:27 al:2
...................UAAGAACACCCAAAAUAGCUG....................................................... len:21 al:2
...................UAAGAACACCCAAAAUAGCUGA...................................................... len:22 al:9
...................UAAGAACACCCAAAAUAGCUGAG..................................................... len:23 al:4
...................UAAGAACACCCAAAAUAGCUGAu..................................................... len:23 al:1
...................UAAGAACACCCAAAAUAGCUGAGa.................................................... len:24 al:4
...................UAAGAACACCCAAAAUAGCUGAGG.................................................... len:24 al:16
...................UAAGAACACCCAAAAUAGCUa....................................................... len:21 al:1
...................UAAGAACACCCAAAAUAGCUGAGGg................................................... len:25 al:1
...................UAAGAACgCCCAAAAUAGCUG....................................................... len:21 al:1
...................UAAGAACACCCAAAAUAGCUGAGu.................................................... len:24 al:2
...................UAAGAACACCCAAAgU............................................................ len:16 al:1
...................UAAGAACACCCgAAAUAGCUGAGG.................................................... len:24 al:1
...................UAAGAACACCCAAAAUAGCUGAa..................................................... len:23 al:2
...................cAAGAACACCCAAAAUAGCUGAGG.................................................... len:24 al:1
...................UAAGAACACCCAAAAU............................................................ len:16 al:1
....................gAGAACACCCAAAAUAGCUGAGGAU.................................................. len:25 al:2
....................AAGAACACaCAAAAUAGCUG....................................................... len:20 al:1
....................AAGAACACCCAAAAUAGCUuAGG.................................................... len:23 al:1
....................AAGAACACCCAAAAUAGCUuA...................................................... len:21 al:1
....................AAGAACACCCAAAAUAGuUGAGGA................................................... len:24 al:5
....................AAGAACACCCgAAAUAGCUGAGGA................................................... len:24 al:2
....................AAGAACACCCAAAAcAGCUGAGGA................................................... len:24 al:1
....................AAGAACACCCAAAAUAGCUGAuG.................................................... len:23 al:3
....................AAGAACACCCAAAgUAGCUGAGG.................................................... len:23 al:2
....................AAGgACACCCAAAAUAGCUGAGG.................................................... len:23 al:9
....................gAGAACACCCAAAAUAGCUGAGG.................................................... len:23 al:17
....................uAGAACACCCAAAAUAGCUGA...................................................... len:21 al:5
....................AAGgACACCCAAAAUAGCUGA...................................................... len:21 al:3
....................cAGAACACCCAAAAUAGCUGAGGA................................................... len:24 al:1
....................AAGAACACCCAAAAUAGCUGg...................................................... len:21 al:17
....................AAGAACACCCAAAAUAGu......................................................... len:18 al:3
....................AAGAACAuCCAAAAUAGCUGA...................................................... len:21 al:1
....................AAGgACACCCAAAAUAGCUGAG..................................................... len:22 al:1
....................AAGAACACCCAAAAUAGCaGAGGA................................................... len:24 al:1
....................AAGAACACCCAAAAUAGCUGAGGuU.................................................. len:25 al:3
....................AAGAACACCCAAAAUAGuUGAG..................................................... len:22 al:1
....................AuGAACACCCAAAAUAGCUGA...................................................... len:21 al:1
....................AAGAACACCCAAAAUAGCUGAGGAUU................................................. len:26 al:36
....................AAGAACACCCAAAAUAGCUGu...................................................... len:21 al:24
....................AAGAACACCCAuAAUAGCUGA...................................................... len:21 al:1
....................AAGAACACCCAAAAUAGCUGAGGAU.................................................. len:25 al:49
....................AAGAACACCCgAAAUAGCUGAGG.................................................... len:23 al:2
....................AAGAACACCCAAAAUAGCUGAGGAUUUU............................................... len:28 al:3
....................AAGuACACCCAAAAUAGCUGAG..................................................... len:22 al:1
....................AuGAACACCCAAAAUAGCUGAGGA................................................... len:24 al:1
....................AAGAACACCCAAAgUAGCUGA...................................................... len:21 al:1
....................AAGAACACCCAgAAUAGCUG....................................................... len:20 al:1
....................AAGAACACCCAAAAUAGCUGc...................................................... len:21 al:4
....................AAGAACACCCAAAAUAGCa........................................................ len:19 al:1
....................AAGAACACCCAAAAUAGCUGAGcA................................................... len:24 al:5
....................AAuAACACCCAAAAUAGCUGAGGA................................................... len:24 al:3
....................AAGAACACCCAAAAUAuCUG....................................................... len:20 al:1
....................AAGAgCACCCAAAAUAGCUGAG..................................................... len:22 al:2
....................AAGAACACCCAgAAUAGCUGA...................................................... len:21 al:4
....................uAGAACACCCAAAAUAGCU........................................................ len:19 al:1
....................AAGAACuCCCAAAAUAGCUGA...................................................... len:21 al:1
....................AgGAACACCCAAAAUAGCUGAGGA................................................... len:24 al:6
....................AAGAACACCCgAAAUAGCUG....................................................... len:20 al:1
....................AAGAACACCCAAAAUAGCUGAG..................................................... len:22 al:353
....................AAGAACACCCAAgAUAGCUGAG..................................................... len:22 al:2
....................AAGAACACCCAAAAUAGuUGAGG.................................................... len:23 al:1
....................AAGAACgCCCAAAAUAGCUGA...................................................... len:21 al:4
....................AgGAACACCCAAAAUAGCUGAGG.................................................... len:23 al:10
....................AAGAACACCCAAAAUAGuUGA...................................................... len:21 al:1
....................AAGAACACCCAAgAUAGCUGAGG.................................................... len:23 al:4
....................AAGAACACCCgAAAUAGCUGA...................................................... len:21 al:1
....................AAGAACgCCCAAAAUAGCUGAGGA................................................... len:24 al:7
....................AAGAACACCCAuAAUAGCUGAGG.................................................... len:23 al:2
....................AAGAACACCCAAAAUAGCUGAa..................................................... len:22 al:43
....................AAGAACACCCAAAAUAGCcG....................................................... len:20 al:1
....................AAGAACACCaAAAAUAGCUGAGGA................................................... len:24 al:2
....................AAGAACACCCAAAAUgGCUGA...................................................... len:21 al:3
....................AAGAuCACCCAAAAUAGCUGAGGA................................................... len:24 al:1
....................AAGAACACCuAAAAUAGCUGAGG.................................................... len:23 al:4
....................AAGAACACCCAAAAUAGCUGAc..................................................... len:22 al:1
....................AAGAACACCCAAAAU............................................................ len:15 al:22
....................gAGAACACCCAAAAUAGCUG....................................................... len:20 al:9
....................AAGAACACCCAAAAUAGCUcAGGA................................................... len:24 al:1
....................AAGAACACCCAgAAUAGCUGAG..................................................... len:22 al:1
....................AAuAACACCCAAAAUAGCUGAGG.................................................... len:23 al:1
....................gAGAACACCCAAAAUAGCUGA...................................................... len:21 al:16
....................AAGAACACCCAAAAUAGCUcA...................................................... len:21 al:3
....................AAGAACACCCAAAAUAGCUGA...................................................... len:21 al:893
....................AAGAACACaCAAAAUAGCUGAGG.................................................... len:23 al:1
....................AAGAACACCCAAAAUAGCUGAGc.................................................... len:23 al:14
....................AAGAACACCCAAAgUAGCUGAGGA................................................... len:24 al:1
....................AAGAACACCCAAAAUAGCUGAGG.................................................... len:23 al:964
....................AAGAACACCCAAAAUAGCcGA...................................................... len:21 al:2
....................AAGAAgACCCAAAAUAGCUGA...................................................... len:21 al:1
....................AAGAACACCCAAAAUAGCUGAGGAcU................................................. len:26 al:1
....................AAcAACACCCAAAAUAGCUGAGGA................................................... len:24 al:1
....................AAGAACACCCAAAAUAGCUa....................................................... len:20 al:46
....................AAGAACACCCAAAAUgGCUGAG..................................................... len:22 al:1
....................uAGAACACCCAAAAUAGCUGAGG.................................................... len:23 al:7
....................AgGAACACCCAAAAUAGCUG....................................................... len:20 al:3
....................AgGAACACCCAAAAUAGCUGAG..................................................... len:22 al:2
....................AAGAACACCCAAAAUAGCUG....................................................... len:20 al:214
....................AcGAACACCCAAAAUAGCUGAGG.................................................... len:23 al:1
....................AAGAACACCCAgAAUAGCUGAGG.................................................... len:23 al:3
....................AAGAACACCCAAAAUAGCU........................................................ len:19 al:7
....................AuGAACACCCAAAAUAGCUGAGG.................................................... len:23 al:1
....................AAGAACgCCCAAAAUAGCUGAGG.................................................... len:23 al:4
....................AAGAACACCCAAAAUAGCUu....................................................... len:20 al:14
....................AAGAgCACCCAAAAUAGCUGA...................................................... len:21 al:8
....................AAGAACACCCAAAAUAaCUGAGG.................................................... len:23 al:1
....................AAGAACACCCuAAAUAGCUGAGG.................................................... len:23 al:1
....................AAGAACACCCAAAAUAGCUGgGG.................................................... len:23 al:3
....................AAGAACACCCAAAAUAGCUGAaG.................................................... len:23 al:1
....................AAGAACACCCAAAAUAGCUGAGa.................................................... len:23 al:272
....................AAGAACACCCAAAAUAGCUaA...................................................... len:21 al:4
....................AAGAACACCCAAAAUAGCUcAGG.................................................... len:23 al:1
....................AAGAACACCCAAAAUAGCUGAGGAg.................................................. len:25 al:1
....................AAGAACACCCAAAAUAGCUGAGGA................................................... len:24 al:978
....................AAGAACACCuAAAAUAGCUGAG..................................................... len:22 al:1
....................AAGAACACCCAAAAUAGCUc....................................................... len:20 al:4
....................AAGAACACCCAAAAUAGCUGAGGAUUU................................................ len:27 al:2
....................AAGAACACCCAAgAUAGCUGA...................................................... len:21 al:1
....................AAGAACACCCAAAAUAGCgG....................................................... len:20 al:4
....................AAGAACACCCAAAAUAGCUGAu..................................................... len:22 al:3
....................AAGAACACCCAAAAUAGCUGAGGAc.................................................. len:25 al:5
....................AAGAACACCaAAAAUAGCUGA...................................................... len:21 al:2
....................AAGAACACCCAAAAUAGCcGAGGA................................................... len:24 al:5
....................AAGAACACCCAAAAUAGCUGAaGA................................................... len:24 al:1
....................AAGAACACCCAAAAUAGCcGAGG.................................................... len:23 al:4
....................AAGAACACCCAAAAUAGCUGAGGAgU................................................. len:26 al:1
....................AAGAACACCCAAAAUgGCUGAGGA................................................... len:24 al:1
....................gAGAACACCCAAAAUAGCUGAGGA................................................... len:24 al:7
....................AAGAACACCCAAAAUAGCUGAGGAa.................................................. len:25 al:8
....................AAGAACAuCCAAAAUAGCUGAGG.................................................... len:23 al:1
....................AAGAgCACCCAAAAUAGCUG....................................................... len:20 al:1
....................cAGAACACCCAAAAUAGCUGA...................................................... len:21 al:3
....................AAGAACACCCAAAAUAGCUGAGGgU.................................................. len:25 al:1
....................AcGAACACCCAAAAUAGCUGAGGA................................................... len:24 al:1
....................AAGAACACCuAAAAUAGCUGAGGA................................................... len:24 al:1
....................gAGAACACCCAAAAUAGCUGAG..................................................... len:22 al:9
....................AAGuACACCCAAAAUAGCUGAGG.................................................... len:23 al:1
....................AAGAACACCCAAgAUAGCUG....................................................... len:20 al:3
....................AAGAACACCCuAAAUAGCUGAG..................................................... len:22 al:1
....................AAGAACACCCAAAAUAGCUGAGGg................................................... len:24 al:13
....................AAGAACACCCAAAAUAGCaG....................................................... len:20 al:1
....................AAGAgCACCCAAAAUAGCUGAGGA................................................... len:24 al:4
....................AAGAACACCCAAAAUAGCUGAGGAUg................................................. len:26 al:1
....................AAGAACACCCAAAAUAGCc........................................................ len:19 al:1
....................AAGAACACCCAAAAUAGCUGgGGA................................................... len:24 al:7
....................AAGgACACCCAAAAUAGCUGAGGA................................................... len:24 al:7
....................AAGAACACCCAAAAUAGCUGAGGAUa................................................. len:26 al:6
....................AAGAACACCCAAAAUAGCUGAGGu................................................... len:24 al:27
....................AAGAACACCCAAAAUAGC......................................................... len:18 al:3
....................AAGAACACCCAAgAUAGCUGAGGA................................................... len:24 al:1
....................AAGAACACCCAAAAUAGCgGAGGAUU................................................. len:26 al:3
....................cAGAACACCCAAAAUAGCUGAG..................................................... len:22 al:2
....................AgGAACACCCAAAAUAGCUGA...................................................... len:21 al:16
....................uAGAACACCCAAAAUAGCUGAGGA................................................... len:24 al:11
....................AcGAACACCCAAAAUAGCUGA...................................................... len:21 al:2
....................AAGAgCACCCAAAAUAGCUGAGG.................................................... len:23 al:2
....................AAGAACACCCAAAAUAGCUGAuGA................................................... len:24 al:1
....................cAGAACACCCAAAAUAGCUGAGG.................................................... len:23 al:3
....................AAaAACACCCAAAAUAGCUG....................................................... len:20 al:2
....................AAGAACACCCAAAAUgGCUGAGG.................................................... len:23 al:3
....................AAGAACACCCAAAAUAGCUGAGu.................................................... len:23 al:49
....................AAGAACACCCAAAAUAGCUGgG..................................................... len:22 al:2
....................AAGAAuACCCAAAAUAGCUGAG..................................................... len:22 al:1
....................AAGAACACCCAAAAUAGCUGAGGAUc................................................. len:26 al:5
....................AAGAACACCCAAAAaAGCUGAGGA................................................... len:24 al:2
....................uAGAACACCCAAAAUAGCUGAG..................................................... len:22 al:1
....................AAGAcCACCCAAAAUAGCUGA...................................................... len:21 al:1
.....................AGAACACCCAAAAUAGCUGAGGA................................................... len:23 al:2
.....................AGgACACCCAAAAUAGCUGAGGA................................................... len:23 al:2
.....................AGAACACCCAAAAUAGCUGAGG.................................................... len:22 al:1
.....................uGAACACCCAAAAUAGCUGAGG.................................................... len:22 al:2
.....................AGAACACCCAAAAUAGCUGgGG.................................................... len:22 al:1
......................GAACACCCAAAAUAGCUGAG..................................................... len:20 al:1
......................GAACACCCAAAAUAGCUGA...................................................... len:19 al:1
.........................CACCCAAAAUAGCUGAGGA................................................... len:19 al:1
...........................CCCAAAAUAGCUGAGGAUUU................................................ len:20 al:1
..........................................GAUUUUGUUUCCUGCUAUAUUGAGUGU.......................... len:27 al:1
............................................UUUUGUUUCCUGCUAUAUUGAGUGU.......................... len:25 al:1
.....................................................CUGCUAUAUUGAGUGUUCUAAuU................... len:23 al:1
.....................................................CUGCUAUAUUGAGUGUUCc....................... len:19 al:1
.....................................................CUGCUAUAUUGAGUGUUCUA...................... len:20 al:1
.....................................................CUGCUAUAUUGAGUGUUC........................ len:18 al:1
.....................................................CUGCUAUAUUGAGUGUUCUAACU................... len:23 al:12
.....................................................CUGCUAUAUUGAGUGUUCUAACa................... len:23 al:1
.....................................................CUGCUAUAUUGAGUGUUCUAAC.................... len:22 al:32
.....................................................CUGCUAUAUUGAGUGUUCUAAu.................... len:22 al:2
.....................................................CUGCUAUAcUGAGUGUUCUAAC.................... len:22 al:1
.....................................................CUGCUAUAUUGAGUGUUCUAACc................... len:23 al:1
......................................................UGCUAUAUUGAGUGUUCUAAC.................... len:21 al:1