Genome: /home/shared/8TB_HDD_01/sam/gitrepos/deep-dive/D-Apul/data/Amil/ncbi_dataset/data/GCF_013753865.1/GCF_013753865.1_Amil_v2.1_genomic.fa
Alignments: /home/shared/8TB_HDD_01/sam/gitrepos/deep-dive/D-Apul/output/13.11-Apul-sRNAseq-ShortStack-R1-reads-cnidarian_miRBase/ShortStack_out/merged_alignments.bam
Location: NC_058068.1:3756500-3756594 minus
Post-script file name: /home/shared/8TB_HDD_01/sam/gitrepos/deep-dive/D-Apul/output/13.11-Apul-sRNAseq-ShortStack-R1-reads-cnidarian_miRBase/ShortStack_out/strucVis/Cluster_2631.ps
Locus Name: Cluster_2631
ACUGGUAAGCAGAAACAACCACGCUAACCUGCUUUCACUUCCAUUUAAUGCAAGUGAGAGAAGGUUAGUGUGGUAGUUUCUGUACAACUGAAAUU
...(((..((((((((.(((((((((((((.(((((((((.(((...))).))))))))).))))))))))))).))))))))...)))...... (-46.70)
....................ACGCUAACCUGCUUUCACUUu...................................................... len:21 al:1
....................ACGCUAACCUGCUUUCACUUCCu.................................................... len:23 al:5
....................ACGCUAACCUGCUUUCACUc....................................................... len:20 al:1
....................AuGCUAACCUGCUUUCACUUCC..................................................... len:22 al:2
....................ACGCUAACCUGCUcUCACUUCCA.................................................... len:23 al:1
....................ACGCUAACCUGCUUUCACUUCCAUU.................................................. len:25 al:1
....................AgGCUAACCUGCUUUCACUUCCA.................................................... len:23 al:1
....................ACGCUAACCUGCUUUCACUUCC..................................................... len:22 al:15
....................ACGCUAACCUGCUUUCACUUCaA.................................................... len:23 al:1
....................ACGCUAACCUGCUUUCACUUCCAU................................................... len:24 al:1
....................ACGCUAACCUGCUUUCACUUCCAaU.................................................. len:25 al:1
....................AuGCUAACCUGCUUUCACUUCCA.................................................... len:23 al:2
....................ACGCUAACCUGCUUUCACUUCCA.................................................... len:23 al:34
....................ACGCUAACCUGCUUcCACUUCC..................................................... len:22 al:1
....................AuGCUAACCUGCUUUCACUUC...................................................... len:21 al:1
....................ACGCUAACCUGCUUUCACUU....................................................... len:20 al:1
....................ACGCUAACCUGCUUUCACUUCu..................................................... len:22 al:8
....................AuGCUAACCUGCUUUCACUUCCAUUU................................................. len:26 al:1
....................ACGCUAACCUGCUUUCACUUC...................................................... len:21 al:5
....................ACGCUAACCUGCUUUCACUUuC..................................................... len:22 al:1
....................gCGCUAACCUGCUUUCACUUCCA.................................................... len:23 al:1
....................ACGCUAACCUGCUUUCACUUCa..................................................... len:22 al:4
.....................CGCUAACCUGCUUUCACUUCa..................................................... len:21 al:1
.....................uGCUAACCUGCUUUCACUUCC..................................................... len:21 al:1
......................GCUAACCUGCUUUCACUUCu..................................................... len:20 al:2
......................GCUAACCUGCUUUCACUUCCA.................................................... len:21 al:1
..........................................AUUUAAUGCAAGUGAGAGAAGGUUAGUGUGa...................... len:31 al:2
...........................................UUUAAUGCAAGUGAGAGAAGGUUAGUGUGa...................... len:30 al:1
...........................................UUUAAUGCAAGUGAGAGAAGaUU............................. len:23 al:1
.................................................aCAAGUGAGAGAAGGUUAGUGU........................ len:22 al:1
.................................................cCAAGUGAGAGAAGGUUAGUGUGG...................... len:24 al:1
.................................................cCAAGUGAGAGAAGGUUAGUGU........................ len:22 al:1
..................................................CAgGUGAGAGAAGGUUAGUGU........................ len:21 al:8
..................................................CAAGUGAGAGAAGGUaAGUGUGG...................... len:23 al:2
..................................................CAAGUGAGAGAAuGUUAGUGUGG...................... len:23 al:1
..................................................CAgGUGAGAGAAGGUUAGUGUGGU..................... len:24 al:2
..................................................CAAGgGAGAGAAGGUUAGUGU........................ len:21 al:5
..................................................CAAGUGAGAGAAGGUUAGUGUGGU..................... len:24 al:248
..................................................CAAGUGAGAGAAGGUUcGUGUGG...................... len:23 al:1
..................................................CAAGUGAGAGAAGGUUAGUGcG....................... len:22 al:2
..................................................CAAGUGAGAGAAGGUUAGgGUGG...................... len:23 al:3
..................................................CAAGUGAGAGAAGGUUAGUGUa....................... len:22 al:51
..................................................CAAGUGAGAGAAGGUUAGUGUGGUc.................... len:25 al:5
..................................................CAAGUGAGAGuAGGUUAGUGUGG...................... len:23 al:3
..................................................CAgGUGAGAGAAGGUUAGUGUG....................... len:22 al:1
..................................................CAAGUGAGAGAAGGUUAGcGU........................ len:21 al:2
..................................................CAAGUGAGAGAAGGUUAGUGc........................ len:21 al:355
..................................................CAAGUGAGgGAAGGUUAGUGUGG...................... len:23 al:13
..................................................CAAGUGAGAGAAGGUU............................. len:16 al:41
..................................................CAAGUGAGAGAAGGUUAGUGUGGUuG................... len:26 al:2
..................................................CAAGUGAGAGgAGGUUAGUGUG....................... len:22 al:1
..................................................CAAGUGAGAGAAGGUUAGUaU........................ len:21 al:8
..................................................CAAGUcAGAGAAGGUUAGUGUGG...................... len:23 al:1
..................................................CAAGUGAGAGAAGGUUAGUGUc....................... len:22 al:2
..................................................CAAuUGAGAGAAGGUUAGUGUGG...................... len:23 al:2
..................................................CAAGUGAGAGAAGGUUAGUGUaG...................... len:23 al:9
..................................................CAAGUGAGAGAAGGUUAGcGUGG...................... len:23 al:7
..................................................CAAGUGAGAGAAGGgUAGUGUGG...................... len:23 al:2
..................................................CAAGUGAGAGAAGGUUAGUGUGu...................... len:23 al:511
..................................................CAAaUGAGAGAAGGUUAGUGU........................ len:21 al:1
..................................................CAAGUGAGAGAAGGUg............................. len:16 al:1
..................................................CAAGUGAGAGAAaGUUAGUGUGG...................... len:23 al:3
..................................................CAAGUGAGAGAAGGUUAGUa......................... len:20 al:8
..................................................CuAGUGAGAGAAGGUUAGUGU........................ len:21 al:1
..................................................CAAGUGuGAGAAGGUUAGUGUGG...................... len:23 al:3
..................................................CAAGUGcGAGAAGGUUAGUGUGG...................... len:23 al:6
..................................................CAAGUGAGAuAAGGUUAGUGUGG...................... len:23 al:1
..................................................CAAGUGAGAGAAGGUUAGUGUGcU..................... len:24 al:6
..................................................gAAGUGAGAGAAGGUUAGUGUGG...................... len:23 al:32
..................................................CAAGUGAGAGgAGGUUAGUGU........................ len:21 al:6
..................................................CAAGUGAGAGAAGGUUAGUGaGG...................... len:23 al:4
..................................................CAAGUGAGAGAAGGUUAGaGUGG...................... len:23 al:5
..................................................CAAGUGAGAGAAGGUUAGUGa........................ len:21 al:97
..................................................CAcGUGAGAGAAGGUUAGUGU........................ len:21 al:1
..................................................CgAGUGAGAGAAGGUUAGUGUGG...................... len:23 al:20
..................................................CAAGUGAGAGAAGGUUAGc.......................... len:19 al:6
..................................................CAAGUGAGAGAAGGUUAGcGUGGU..................... len:24 al:3
..................................................CAAGUGAGAGAAGGUUAGgGU........................ len:21 al:2
..................................................CcAGUGAGAGAAGGUUAGUGUG....................... len:22 al:1
..................................................CAAGUGAGAGAAGGUUAu........................... len:18 al:1
..................................................CAAGUGuGAGAAGGU.............................. len:15 al:1
..................................................CAAGUGAGAGAAGGUUgGUGU........................ len:21 al:4
..................................................CAAGUGAGAGAAGGUUAGUaUGG...................... len:23 al:3
..................................................CAAGUGAGAGAAGGUUAGUGUGc...................... len:23 al:157
..................................................CcAGUGAGAGAAGGUUAGUGUGG...................... len:23 al:3
..................................................CAAGUaAGAGAAGGUUAGUGUGG...................... len:23 al:1
..................................................CAAGUGAGAGAAGGUUAGUuU........................ len:21 al:3
..................................................CAAGUGAGAGAAGGUUAGUG......................... len:20 al:62
..................................................CAAGUGAGAGAAGGUUuGUGUGG...................... len:23 al:2
..................................................CAAGUGAGAGgAGGUU............................. len:16 al:1
..................................................CAAGcGAGAGAAGGUUAGUGUGG...................... len:23 al:16
..................................................CAgGUGAGAGAAGGUUAGUGUGG...................... len:23 al:21
..................................................CAAGUGAGAGAAGGUUAGUuUGG...................... len:23 al:3
..................................................CAAGUGAGAGAgGGUUAGUGU........................ len:21 al:9
..................................................CAAGUGAGAGAAGGUUA............................ len:17 al:6
..................................................CAAGUGAGAGAAGGUUAGUGUGGa..................... len:24 al:47
..................................................CAAGUGAGAGAAGGUUAGUGcGG...................... len:23 al:20
..................................................CAcGUGAGAGAAGGUUAGUGUGG...................... len:23 al:1
..................................................gAAGUGAGAGAAGGUUAGUGUG....................... len:22 al:1
..................................................CAAGUGAGAGAAGuUUAGUGUGG...................... len:23 al:4
..................................................CAAGUGAGAGAAGGUUAGUGUGG...................... len:23 al:5040
..................................................CAAGUGAGAGAAGGUUAGUGUcG...................... len:23 al:4
..................................................CAAGaGAGAGAAGGUUAGUGUGG...................... len:23 al:1
..................................................CAAGUGAGAGAAGGUUAGUGUGa...................... len:23 al:1758
..................................................CAAGUGAGAGAcGGUUAGUGU........................ len:21 al:2
..................................................CAAGUGgGAGAAGGUUAGUGU........................ len:21 al:11
..................................................CAAGUGAGAGgAGGUUAGUGUGG...................... len:23 al:28
..................................................gAAGUGAGAGAAGGUUAGU.......................... len:19 al:1
..................................................CAAGUGAGAGAAGGUUAGgGUG....................... len:22 al:1
..................................................aAAGUGAGAGAAGGUUAGUGUGG...................... len:23 al:2
..................................................uAAGUGAGAGAAGGUUAGUGUGGU..................... len:24 al:2
..................................................CAAGUGAGAGAAGGUUgGUGUG....................... len:22 al:1
..................................................CAAGUGAGAGAAGGUcAGUGUGG...................... len:23 al:10
..................................................CAAGUGcGAGAAGGUUAGUGU........................ len:21 al:1
..................................................CAAGUGAGAGAAGGUUgG........................... len:18 al:1
..................................................CAuGUGAGAGAAGGUUAGUGUGG...................... len:23 al:1
..................................................CAuGUGAGAGAAGGUUAGUGU........................ len:21 al:5
..................................................uAAGUGAGAGAAGGUUAGUGUG....................... len:22 al:2
..................................................CAAGUGAGuGAAGGUUAGUGUGG...................... len:23 al:4
..................................................CAAGUGAGcGAAGGUUAGUGU........................ len:21 al:1
..................................................gAAGUGAGAGAAGGUUAGUGUGGU..................... len:24 al:1
..................................................CAAGUGAGAGAgGGU.............................. len:15 al:2
..................................................CuAGUGAGAGAAGGUUAGUGUGG...................... len:23 al:3
..................................................CAAGUGAGAGAAGcUUAGUGUGG...................... len:23 al:1
..................................................CAAGUGgGAGAAGGUU............................. len:16 al:1
..................................................CAAGUGAGAGAAGaUUAGUGU........................ len:21 al:2
..................................................CAAGUGAGAGAAGGUUAGUGUGGUA.................... len:25 al:8
..................................................CAAGUGAGAGAAGGUUAGaGU........................ len:21 al:3
..................................................CAAGUGAGAGAAGGUUAGa.......................... len:19 al:1
..................................................CAAuUGAGAGAAGGUUAGUGU........................ len:21 al:2
..................................................CAAGUGAGAGAAGGUcAGUGUGGU..................... len:24 al:1
..................................................CAAGUGAGAGAAGcUUAGUGU........................ len:21 al:1
..................................................CAAGUGAGAGAgGGUUAGUGUGGU..................... len:24 al:1
..................................................CAAGUGAGAGAAGGUcAGUGUG....................... len:22 al:1
..................................................uAAGUGAGAGAAGGUUAGUGUGG...................... len:23 al:28
..................................................CAAGUGAGAGAgGGUUAGUGUGG...................... len:23 al:26
..................................................CAAGUGAGAGAuGGUUAGUGUGG...................... len:23 al:1
..................................................aAAGUGAGAGAAGGUUAGUGU........................ len:21 al:1
..................................................CAAGUGAGAGAgGGUUAGUGUG....................... len:22 al:2
..................................................CAAGUGAGAGAAGGUUAGUGUGGc..................... len:24 al:68
..................................................CAAGUGgGAGAAGGUUAGUGUGG...................... len:23 al:29
..................................................CAAGUGAGAGAAGGUUAGUGU........................ len:21 al:1779
..................................................CAAGUGAGgGAAGGUUAGUGUG....................... len:22 al:2
..................................................CAAGUGAGAGAAGGUUAGUGg........................ len:21 al:45
..................................................CAAGUGAGAGAAGuUUAGUGU........................ len:21 al:2
..................................................CAAGUGAaAGAAGGUUAGUGUGG...................... len:23 al:1
..................................................CAAGUGAGAGAAGaUUAGUGUGG...................... len:23 al:4
..................................................CAAGUGAGAGAAGGUUAG........................... len:18 al:11
..................................................uAAGUGAGAGAAGGUUAGUGU........................ len:21 al:7
..................................................CAAGUGAGAGAAGGUcAGUGU........................ len:21 al:5
..................................................CAAGUGAGcGAAGGUUAGUGUGGU..................... len:24 al:1
..................................................CAAGcGAGAGAAGGUUAGUGU........................ len:21 al:9
..................................................CAAGUGAGAGAAGGUUAGUGUu....................... len:22 al:4
..................................................uAAGUGAGAGAAGGUU............................. len:16 al:1
..................................................CAAGUGAGAGAAGGgUAGUGU........................ len:21 al:2
..................................................CAAGUGAGAGAAGGUUAGUGUuGU..................... len:24 al:1
..................................................CAAGUGgGAGAAGGUUAGUGUGGU..................... len:24 al:3
..................................................CAAGUGAGAGAAGGUUAGUGgGG...................... len:23 al:11
..................................................CAAGUGAGuGAAGGUUAGUGU........................ len:21 al:1
..................................................CAAGUGAGAGAAGGUUgGUGUGG...................... len:23 al:14
..................................................CAAGUGAGgGAAGGUUAGUGU........................ len:21 al:8
..................................................CAAGUGAGAGAAGGUUAa........................... len:18 al:1
..................................................CAAGUGAGAGAAGGUUAGg.......................... len:19 al:1
..................................................CAAGUGAGAGAAGGcUAGUGUGG...................... len:23 al:9
..................................................CAAGUGAGAGAAGGUUAaUGUGGU..................... len:24 al:1
..................................................CAAGUGAGAGAAGGUUAGUGUGuU..................... len:24 al:29
..................................................CAAGUGAGAGAAGGcUAGUGU........................ len:21 al:5
..................................................CAAGUGAGgGAAGGUU............................. len:16 al:1
..................................................CAAGUGuGAGAAGGUUAGUGU........................ len:21 al:1
..................................................CgAGUGAGAGAAGGUUAGUGU........................ len:21 al:8
..................................................CAAGUGAGAGAAGGUUAGUGUG....................... len:22 al:131
..................................................CAAGUGAGAGAAGGUUAGUcU........................ len:21 al:9
..................................................CAAGUGAGAGAAGGUUAGU.......................... len:19 al:53
..................................................CAAGUGAGAaAAGGUUAGUGU........................ len:21 al:1
..................................................CAAGUGAGcGAAGGUUAGU.......................... len:19 al:1
..................................................CAAGUaAGAGAAGGUUAGUGU........................ len:21 al:3
..................................................CAAGUGAGAGAAGGUUAGUGUGGg..................... len:24 al:8
..................................................CAAGUGAGAGAAGGUUAGUGUGGUAu................... len:26 al:2
..................................................gAAGUGAGAGAAGGUUAGUGU........................ len:21 al:11
..................................................CAAGUGAGAGAAGGU.............................. len:15 al:7
..................................................CAAGgGAGAGAAGGUUAGUGUGG...................... len:23 al:8
..................................................CAAGUGAGAGAAGGUUAGUGUGGUu.................... len:25 al:22
..................................................CAAGUGAGAGAAuGUUAGUGUGGU..................... len:24 al:2
..................................................CAAGUGAGAGAAGGUc............................. len:16 al:12
..................................................CAAGUGAGAGAAGGUUAuUGUGG...................... len:23 al:3
...................................................AAGUGAGAGAAuGUUAGUGUGG...................... len:22 al:1
...................................................AAGUGAGAGAAGGUUAGUGUGG...................... len:22 al:40
...................................................AAGUGAGAGAAGGUUAGUGU........................ len:20 al:11
...................................................AAGUGAGAGAAGGUUAGUGUGGUc.................... len:24 al:1
...................................................AAGUGAGAGAAGGUUAGUGUGu...................... len:22 al:2
...................................................gAGUGAGAGAAGGUUAGUGUGG...................... len:22 al:1
...................................................AAGUGAGAGAAGGUUAGUGUGGU..................... len:23 al:1
...................................................AAGUGAGAGAAGGUUAGUGUGGa..................... len:23 al:1
...................................................AAGUGAGAGAAGGUUAGUGUGa...................... len:22 al:14
...................................................AAGUGAGAGAAGGUUAGUGc........................ len:20 al:5
...................................................AAGUGAGAGAAGGUUAGUGUG....................... len:21 al:2
...................................................AAGUGAGAGAAGGUUAGUGUGc...................... len:22 al:5
...................................................AAGUGAGAGAAGGUU............................. len:15 al:2
....................................................AGUGAGAGAAGGUUAGUGUGGU..................... len:22 al:2
....................................................AGUGAGAGAAGGUUAGUGg........................ len:19 al:1
....................................................gGUGAGAGAAGGUUAGUGUGG...................... len:21 al:1
....................................................AGUGAGAGAAGGUUAGUGUGGUu.................... len:23 al:2
....................................................AGUGAGAGAAGGUUAGUGa........................ len:19 al:1
....................................................AGUGAGAGAAGGUUAGUGUGGa..................... len:22 al:1
....................................................AGUGAGAGAAGGUUAGUGU........................ len:19 al:20
....................................................AGUGAGAGAAGGUUAGUGUGGUc.................... len:23 al:2
....................................................AGUGAGAGAAGGUUAGUaU........................ len:19 al:1
....................................................AGUGAGAGAAGGUUAGUGUGu...................... len:21 al:3
....................................................AGUGAGAGAAGGUUAGUG......................... len:18 al:2
....................................................AGUGgGAGAAGGUUAGUGUG....................... len:20 al:1
....................................................AGUGAGAGgAGGUUAGUGUGG...................... len:21 al:1
....................................................AGUGAGAGAAGGUUAGUcU........................ len:19 al:1
....................................................AGUGAGAGAAGGUUAGUGUGG...................... len:21 al:48
....................................................AGUGAGAGAAGGUUAGUGUGa...................... len:21 al:23
....................................................AGUGAGAGAgGGUUAGUGUGG...................... len:21 al:1
....................................................AGUGAGAGAAGGUUAGUGUcG...................... len:21 al:1
....................................................AGUGAGAGAAGGUUAGUGUGuU..................... len:22 al:1
.....................................................GUGAGAGAAGGUUAGUGUGa...................... len:20 al:1
.....................................................GUGAGAGAAGGUUAGUGUGu...................... len:20 al:2
.....................................................GUGAGAGAAGGUUAGUGU........................ len:18 al:1
.....................................................GUGAGAGAAGGUUAGUGUGG...................... len:20 al:4
......................................................UGAGAGAAGGUUAGUGUGGUu.................... len:21 al:4
......................................................UGAGAGAAGGUUAGUGUGGc..................... len:20 al:1
......................................................UGAGAGAAGGUUAGUGUGG...................... len:19 al:2
......................................................UGAGAGAAGGUUAGUGUGuU..................... len:20 al:2
.......................................................GAGAGAAGGUUAGUGUGG...................... len:18 al:1
.........................................................GAGAAGGUUAGUGUGa...................... len:16 al:2