Genome: /home/shared/8TB_HDD_01/sam/gitrepos/deep-dive/D-Apul/data/Amil/ncbi_dataset/data/GCF_013753865.1/GCF_013753865.1_Amil_v2.1_genomic.fa
Alignments: /home/shared/8TB_HDD_01/sam/gitrepos/deep-dive/D-Apul/output/13.1-Apul-sRNAseq-ShortStack-R1-reads/ShortStack_out/merged_alignments.bam
Location: NC_058074.1:2966503-2966594 plus
Post-script file name: /home/shared/8TB_HDD_01/sam/gitrepos/deep-dive/D-Apul/output/13.1-Apul-sRNAseq-ShortStack-R1-reads/ShortStack_out/strucVis/Cluster_7310.ps
Locus Name: Cluster_7310
CUGUUUACGGUUUAACUGGGUAGCAUAACAUUGUAAGAGAUCUUUAAAGGUCUCUUACAUUGUUGUGCUGCCUGGAAAAACUGAACUGACUG
..(((..((((((..(((((((((((((((.((((((((((((....)))))))))))).)))))))))))))))..))))))....))).. (-46.60)
....................UAGCAUAACuUUGUAAGAGAUCU................................................. len:23 al:1
....................UAGCAUAgCAUUGUAAGAGAUCU................................................. len:23 al:55
....................gAGCAUAACAUUGUAAGAGAUCUU................................................ len:24 al:1
....................UAGCAUAACAUUGUAAGA...................................................... len:18 al:3
....................UAGCAUAACAUcGUAAGAGAUC.................................................. len:22 al:3
....................UgGCAUAACAUUGUAAGAGAUCUUU............................................... len:25 al:1
....................UAGCAUAACAUUGcAAGAGAUCU................................................. len:23 al:12
....................UAGCAUAACAUcGUAAGAGAUCU................................................. len:23 al:19
....................UAGCAcAACAUUGUAAGAGAUCU................................................. len:23 al:13
....................UAGCAUAACAUUGUAAGuGAUCU................................................. len:23 al:2
....................UAGCAUAgCAUUGUAAGAGAUCUU................................................ len:24 al:2
....................UAGCAUAACAUUGUAAGAGAUCUUUAAAGG.......................................... len:30 al:1
....................UAGuAUAACAUUGUAAGAGAUCU................................................. len:23 al:10
....................UAGCAUAACAUUGUAAGAGAUCUc................................................ len:24 al:35
....................UAGCAUAACAUUGUAAGAGAgC.................................................. len:22 al:1
....................UAGCAUAgCAUUGUAAGAGAUCUUU............................................... len:25 al:1
....................UAGCAUAACAUUGUAAGAGgUCU................................................. len:23 al:30
....................UuGCAUAACAUUGUAAGAGAUCU................................................. len:23 al:10
....................UAGCAUAACAUUGUAAGAGAUCUUUAAAGu.......................................... len:30 al:1
....................UAGCAUAACAUUGUAgG....................................................... len:17 al:6
....................UAGCAUAACAUaGUAAGAGAUCU................................................. len:23 al:3
....................UuGCAUAACAUUGUAAGAGAUCUU................................................ len:24 al:1
....................UAGCAUAACAUUGUAAGAGAUCUUUg.............................................. len:26 al:1
....................UAGCuUAACAUUGUAAGAGAUCU................................................. len:23 al:3
....................gAGCAUAACAUUGUAAGAGAUC.................................................. len:22 al:1
....................UAGCAUAACAUUGUAAuAGAUCUU................................................ len:24 al:1
....................UAGCAUAACgUUGUAAGAGAUCUUU............................................... len:25 al:2
....................UAGCAUAACAUUGUAAGAGAUC.................................................. len:22 al:209
....................UAGCAUAACAUUGUAAGAGcUCU................................................. len:23 al:2
....................UAGCAUAACAUUGUAAGAGAUCaU................................................ len:24 al:1
....................UuGCAUAACAUUGUAAGAGAUC.................................................. len:22 al:1
....................UAGCAUAACAcUGUAAGAGAUCU................................................. len:23 al:8
....................UAGCAUAACAUUGUAAGAGAUCUUUuA............................................. len:27 al:6
....................UAGCAUAACgUUGUAAGAGAUCUUUAAA............................................ len:28 al:1
....................UAGCAUAACAUUGUAAGAGAUCUUUc.............................................. len:26 al:2
....................UAGCAUAACAUUGUAAGAGAUCc................................................. len:23 al:841
....................UAGCAUuACAUUGUAAGAGAUC.................................................. len:22 al:1
....................UAGCAgAACAUUGUAAGA...................................................... len:18 al:3
....................UAGCAUAACAUUGUAAGAGAUCU................................................. len:23 al:5039
....................UAGCAUAACAUUGUAAGAGAUCUU................................................ len:24 al:334
....................UAGCgUAACAUUGUAAGAGAUCUUU............................................... len:25 al:1
....................UAGCAUAACAgUGUAAGAGAUCU................................................. len:23 al:3
....................UcGCAUAACAUUGUAAGAGAUCU................................................. len:23 al:7
....................aAGCAUAACAUUGUAAGAGAUCUU................................................ len:24 al:1
....................UAGCAUAACAUUGUAAGAGuUCU................................................. len:23 al:3
....................UAGCAgAACAUUGUAAGAGAUCU................................................. len:23 al:1
....................UAGCAUAACAUUGUAAGAGAUa.................................................. len:22 al:6
....................UAGCAUAACAUUGUAAGAGgUCUU................................................ len:24 al:3
....................UgGCAUAACAUUGUAAGAGAUCU................................................. len:23 al:23
....................UAGCAUAACAUUGUAAGgGAUCUU................................................ len:24 al:1
....................UAGCAUAgCAUUGUAAGAGAUC.................................................. len:22 al:5
....................UAGCAUAACcUUGUAAGAGAUCU................................................. len:23 al:1
....................UAGCAUAACAUUGUAAGAGAcCU................................................. len:23 al:61
....................UAGCAUAACAUUGUAAGAGg.................................................... len:20 al:1
....................UAGCAUAACAUUGUAAGAGAUCUUaA.............................................. len:26 al:2
....................UAGCAUAACAUcGUAAGAGAUCUU................................................ len:24 al:3
....................aAGCAUAACAUUGUAAG....................................................... len:17 al:1
....................UAGCAUAACAUUGUcAGAGAUCU................................................. len:23 al:1
....................UAGCAUAACAUUGUAAGAGAUCUUUu.............................................. len:26 al:30
....................UAGCAUAACAUUGUAAaAGAUCU................................................. len:23 al:1
....................UAGCAUAACAUUGUAAGAGAcCUU................................................ len:24 al:1
....................UAGCAUAACAUUGUAAGAGAUCUUg............................................... len:25 al:3
....................UAGCAUAACAUUGUAAGAGAUu.................................................. len:22 al:14
....................UAGCAUAAaAUUGUAAGAGAUCU................................................. len:23 al:2
....................UAGCAUAACAUUGUAcGAGAUC.................................................. len:22 al:1
....................UAGCAUAACAUUaUAAGAGAUCU................................................. len:23 al:2
....................UAGCAUAACAUUGUAAGAGAc................................................... len:21 al:2
....................UAGCAUAACAUgGUAAGAGAUCU................................................. len:23 al:1
....................UAGCAUAACAUUGUAAGAGAUaU................................................. len:23 al:3
....................UAGCAUAgCAUUGUAAG....................................................... len:17 al:9
....................UAGCAUAgCAUUGUAAGAGAU................................................... len:21 al:1
....................UAGCAUAACAUUGUAAGAGAgCU................................................. len:23 al:8
....................UAGCAUAAuAUUGUAAGAGAUCU................................................. len:23 al:4
....................UAGCAUAACAUUGUgAGAGAUCU................................................. len:23 al:15
....................UAGCAUAACAUUGUAAGAGAUCUUU............................................... len:25 al:140
....................UAGCAUAACAUUGUAuGAGAUCU................................................. len:23 al:3
....................UAGCAUAACAUUGcAAGAGAUCUU................................................ len:24 al:1
....................UAGCAUgACAUUGUAAGAGAUCU................................................. len:23 al:8
....................UAGCAUAACAUUGUAAGAGAUCa................................................. len:23 al:624
....................UAaCAUAACAUUGUAAGAGAUCUU................................................ len:24 al:1
....................UAGCAUAACAcUGUAAG....................................................... len:17 al:2
....................UAGCAUAACAUUGUAAGAGAUCUaU............................................... len:25 al:22
....................UAGCAUAACAUUGUAAGAGAUuU................................................. len:23 al:6
....................UAGCAUAACAUcGUAAG....................................................... len:17 al:3
....................UAGCAUAACAUUGUAAGAGA.................................................... len:20 al:3
....................UAGCAUAACAUUGUAAGgGAUCU................................................. len:23 al:29
....................gAGCAUAACAUUGUAAGAGAUCU................................................. len:23 al:17
....................UAGCAaAACAUUGUAAGAGAUCU................................................. len:23 al:5
....................UAGCgUAACAUUGUAAGAGAUCU................................................. len:23 al:18
....................UAGCAUAACAUUGUAAGAGAUCUUUAuA............................................ len:28 al:2
....................UAGCAUAACAUUGUAAc....................................................... len:17 al:1
....................cAGCAUAACAUUGUAAGAGAUC.................................................. len:22 al:4
....................UAGCAUAuCAUUGUAAGAGAUCU................................................. len:23 al:2
....................UAGCAgAACAUUGUAAGAGAUC.................................................. len:22 al:1
....................UAaCAUAACAUUGUAAGAGAUCU................................................. len:23 al:4
....................cAGCAUAACAUUGUAAGAGAUCU................................................. len:23 al:24
....................UAGCAUAACAUUGUAAGAGAUCUUc............................................... len:25 al:22
....................UAGCAUAACAUUGUAAGAGAUCUa................................................ len:24 al:21
....................UAGCAUAACgUUGUAAGAGAUCU................................................. len:23 al:13
....................UAGCAUAACAUUGUAcG....................................................... len:17 al:1
....................UAGaAUAACAUUGUAAGAGAUCU................................................. len:23 al:2
....................UAGCAUAACAUUGUAAGAGAUCUUa............................................... len:25 al:9
....................aAGCAUAACAUUGUAAGAGAUCU................................................. len:23 al:8
....................UAGCAUAACAUUGUAAGAGAgCUU................................................ len:24 al:1
....................UAGCAUAACAUUGUAAGAGAcCUUU............................................... len:25 al:1
....................UAGCAUAACAUUGUgAGAGAUCUUU............................................... len:25 al:2
....................UAGCAUAACAUUGaAAG....................................................... len:17 al:1
....................gAGCAUAACAUUGUAAG....................................................... len:17 al:1
....................UAGCAUAACAUUGUAAG....................................................... len:17 al:351
....................UAGCAUAACAUUGaAAGAGAUCU................................................. len:23 al:1
....................UAGCAUAACAUUGUAAGAGAUCg................................................. len:23 al:158
....................UAGCAUAACAUUGUAuGAGAUCUUU............................................... len:25 al:1
....................UAGCAUAACAUUGUAAGAGAUCcU................................................ len:24 al:13
....................UAGCAUAACAUUGUAAGAGAUCUcU............................................... len:25 al:4
....................UAGCAUAACAUUGUAAu....................................................... len:17 al:1
....................UAGCAUAACAUUGUgAG....................................................... len:17 al:1
....................UAGCAUAACAUUGUAAGAGAUCUUUA.............................................. len:26 al:5
....................UAGCAUAACAUUGUAAGAuAUCU................................................. len:23 al:2
....................cAGCAUAACAUUGUAAGAGAUCUU................................................ len:24 al:1
....................UAGCAUAACAUUGUAAGAGAUCUUUAu............................................. len:27 al:4
....................cAGCAUAACAUUGUAAG....................................................... len:17 al:2
....................UAGCAUAACAUaGUAAGAGAUCUUUAAAGG.......................................... len:30 al:1
....................UAGCAUAACAaUGUAAGAGAUCU................................................. len:23 al:2
....................UAGCAUAACAUUGUAAGAGAaCU................................................. len:23 al:4
....................UAGCAUAACAUUGUAgGAGAUCU................................................. len:23 al:16
....................UgGCAUAACAUUGUAAGAGAUCUU................................................ len:24 al:3
....................UAGCAUAACAUUuUAAGAGAUCU................................................. len:23 al:1
....................UAGCAUAACAUUGUAcGAGAUCU................................................. len:23 al:6
....................UAGCAUAACAUUGUAAGAGAUCUaUA.............................................. len:26 al:1
....................UAGuAUAACAUUGUAAG....................................................... len:17 al:1
....................UAGCAUAACAUUGUAAGAGAUCUg................................................ len:24 al:3
....................UAGCAUAACAUUGUAAGAGu.................................................... len:20 al:1
....................UAGCAUAACAUUGUuAGAGAUCU................................................. len:23 al:1
....................UAGCAUAACAUUGUAAGAaAUCU................................................. len:23 al:1
....................UAGCAUAACAUUGUAAGAGAU................................................... len:21 al:7
....................UAGCAUAACAUUGUAAGAGAUuUU................................................ len:24 al:1
.....................AGCAUAACAUUGUAAGAGAUCa................................................. len:22 al:3
.....................AGCAUAACAUUGUAAGAGAUCU................................................. len:22 al:8
.....................AGCAUAACAUUGUAAGAGAUuU................................................. len:22 al:1
......................GCAUAACAUcGUAAGAGAUCU................................................. len:21 al:1
......................GCAUAACAUUGUAAGAGAUCU................................................. len:21 al:1
......................GCAUAACAUUGUAAGAGAUCc................................................. len:21 al:1
.......................CAUAACAUUGUAAGAGAUCU................................................. len:20 al:2
........................AUAACAUUGUAAGAGAUCc................................................. len:19 al:1
........................AUAgCAUUGUAAGAGAUCU................................................. len:19 al:1
........................AUAACAUUGUAAGAGAUCU................................................. len:19 al:5
..........................................UUUAAAGGUCUCUUACAUUGUUGUGCUGCa.................... len:30 al:1
..........................................UUUAAAGGUCUCUUACAUUGUUGUGCUGCu.................... len:30 al:2
...........................................UUAAAGGUCUCUUACAUUGUUGUGCUGCu.................... len:29 al:2
...........................................UUAAAGGUCUCUUACAUUGUUGUGCUGCa.................... len:29 al:2
...........................................UUAAAGGUCUCUUACAUUGUUGUGCUGCC.................... len:29 al:6
...........................................UUAAAGGUCUCUUACAUUGUUGUGCUGCCa................... len:30 al:1
.................................................GUCUCUUACAUUGUUGUGCUGCCUu.................. len:25 al:11
.................................................GUCUCUUACAUUGUUGUGCUGCg.................... len:23 al:12
.................................................GUCUCUUACAUUGUUGUGCaG...................... len:21 al:1
.................................................GUCUCUUACAUUGUUGUGCUGCCc................... len:24 al:12
.................................................GUCUCUUACAUUGUUGUGCUGg..................... len:22 al:2
.................................................aUCUCUUACAUUGUUGUGCUGC..................... len:22 al:1
.................................................GUCUCUUACAUUGUUGUGCUGCC.................... len:23 al:273
.................................................GUCUCUUACAUUGUcGUGCUGCC.................... len:23 al:1
.................................................aUCUCUUACAUUGUUGUGCUG...................... len:21 al:1
.................................................GUCUCUUACAUUGUUGUGCg....................... len:20 al:1
.................................................GUCUCUUACAUUGUUGUGCUGu..................... len:22 al:31
.................................................GUCUCUUACAUUGUUGUGCUa...................... len:21 al:1
.................................................GUCUCUUACAUUGUUGUGCUGCu.................... len:23 al:215
.................................................GUCUCUUACAUUGUUGUGCUGC..................... len:22 al:93
.................................................GUCUCgUACAUUGUUGUGCUGCC.................... len:23 al:1
.................................................GUCUCUUACAUUGUUGUGCc....................... len:20 al:1
.................................................GUCUCUUACAUUGUUGUGCUGCa.................... len:23 al:138
.................................................GUCUCUUACAUcGUUGUGCUGCC.................... len:23 al:2
.................................................GUCUCUUACAUUGUUGUGCUaCC.................... len:23 al:1
.................................................GUCUCUUACAUUGUUGUGCUGCCU................... len:24 al:42
.................................................aUCUCUUACAUUGUUGUGCUGCC.................... len:23 al:2
.................................................GUCUCUUACAUUGUUGUGCUGCCg................... len:24 al:7
.................................................GUCUCUUACAUUGUUGUGCUGa..................... len:22 al:6
.................................................GUCUCUUACAUUGUUGUGCU....................... len:20 al:6
.................................................GUCUCUUACAUUGcUGUGCUGCC.................... len:23 al:3
.................................................GUCUCUUACAUUGUUGUGCUGCCUc.................. len:25 al:1
.................................................GUCUCUUACAUUGUUGUGC........................ len:19 al:1
.................................................GUCUCUUACAUUGUUGUGCUGCaU................... len:24 al:2
.................................................GcCUCUUACAUUGUUGUGCUGCC.................... len:23 al:3
.................................................GUCUCUUACAUUGUUGcGCUGCC.................... len:23 al:1
.................................................GUCcCUUACAUUGUUGUGCUGC..................... len:22 al:1
.................................................GUCUCUUACAUUGUUGUGCUGuC.................... len:23 al:2
.................................................GUCUCUUgCAUUGUUGUGCUGC..................... len:22 al:2
.................................................GUCUCUUACAUUGUUGUGCUcCCU................... len:24 al:1
.................................................GUCUCUUACAUUGUUGUGCUuCCU................... len:24 al:1
.................................................GUCUCUUACAUUGUUGUGCUGaC.................... len:23 al:2
.................................................GUCUCUUACAUUGUUGUGCcGC..................... len:22 al:1
.................................................GUCUCUUACAUUGUUGUGCUGCCa................... len:24 al:98
.................................................GUCUCUUACAUUGUUGUGuUGCC.................... len:23 al:1
.................................................GUCcCUUACAUUGUUGUGCUGCC.................... len:23 al:2
.................................................GUCUCcUACAUUGUUGUGCUGCC.................... len:23 al:3
.................................................GUCUCUUACAUUGUUGUGCUGCCUa.................. len:25 al:2
.................................................aUCUCUUACAUUGUUGUGCUGCCU................... len:24 al:1
.................................................GUCUCUUACgUUGUUGUGCUGCC.................... len:23 al:1
.................................................GUCUCUUACAUUGUUGUGCUGCuU................... len:24 al:1
.................................................GUCUCUUACAUUGUUGUGCUG...................... len:21 al:18
..................................................UCUCUUACAUcGUUGUGCUGCC.................... len:22 al:2
..................................................aCUCUUACAUUGUUGUGCUGCC.................... len:22 al:2
..................................................UCUCUUACAUUGUUGUGCUGa..................... len:21 al:5
..................................................UCcCUUACAUUGUUGUGCUGCCU................... len:23 al:2
..................................................UaUCUUACAUUGUUGUGCUGCC.................... len:22 al:3
..................................................UCUCUUACAUUGUUaUGCUGCC.................... len:22 al:1
..................................................UCaCUUACAUUGUUGUGCUGCC.................... len:22 al:2
..................................................UCUCUUACAUUGUUGUGCUGaC.................... len:22 al:3
..................................................UCUCUUAuAUUGUUGUGCUGC..................... len:21 al:1
..................................................UCUCUUACAUUGUUGUGCc....................... len:19 al:2
..................................................UCUCUUACAUUGUUGUGCUGCu.................... len:22 al:295
..................................................UCUCUUACAUUGUUGUGCUGCCUc.................. len:24 al:1
..................................................UCUCUUACAUUGUUGUGCUaCC.................... len:22 al:4
..................................................UCUCUUACAUUGUcGUGCUGCC.................... len:22 al:4
..................................................UCUCUUACAUUGUUGUGCUa...................... len:20 al:6
..................................................UCUCUUACAUUGUUGUGCcGCC.................... len:22 al:4
..................................................UCUCUUACAUUGUUGUGCUGCCU................... len:23 al:37
..................................................UCUCUUACAUUGcUGUGCUGCC.................... len:22 al:4
..................................................UCcCUUACAUUGUUGUGCUGCC.................... len:22 al:4
..................................................UCUCUUACAUUGUUGUGCUGu..................... len:21 al:16
..................................................UCUCUUACAUUGUUGUGCUGC..................... len:21 al:38
..................................................UCUCUUACAUUGUUGUGCUGuC.................... len:22 al:1
..................................................UCUCUUACAUUGUUGUGCgGC..................... len:21 al:1
..................................................UCUCUUAuAUUGUUGUGCUGCC.................... len:22 al:1
..................................................UCUCUUAaAUUGUUGUGCUGCC.................... len:22 al:1
..................................................UCUCUUACAUUGUUGUGCUcCCU................... len:23 al:1
..................................................gCUCUUACAUUGUUGUGCUGC..................... len:21 al:1
..................................................UCUCUUACAUUGUUGUGCUGCCc................... len:23 al:5
..................................................UCUCUUACAUUGUUGUGCUG...................... len:20 al:16
..................................................UCUCUUACAUUGUUGUGCUGCC.................... len:22 al:389
..................................................UCUCUUACAUUGUUGUGCUGCCa................... len:23 al:94
..................................................UCUCUUACAUUGUUGUGCUGCa.................... len:22 al:195
..................................................UCUCUUACAUUGUUGUGCUGCCUu.................. len:24 al:5
..................................................UCUCUUACAUUGUUGUaCUGCC.................... len:22 al:1
..................................................UCUCUUACAUUGUUGUGCUcC..................... len:21 al:2
..................................................UCUCUUACgUUGUUGUGCUGCC.................... len:22 al:1
..................................................UCUCUUACAUUGUUGUGCUGCuU................... len:23 al:1
..................................................UCUCUUACAUUGUUGUGCUGCCg................... len:23 al:8
..................................................UCUCUUACAUUGUUGUGCUu...................... len:20 al:2
..................................................UCUCUUACAUaGUUGUGCUGCC.................... len:22 al:1
..................................................UCUCUUACAUUGUUGUGCUGCg.................... len:22 al:11
..................................................UCUCUUACAUUGUUGUGgUGC..................... len:21 al:2
..................................................UCUCUUACAUUGUUGUGCU....................... len:19 al:5
...................................................CUCUUACAUUGUUGUGCUGu..................... len:20 al:2
....................................................UCUUACAUUGUUGUGCUGCCa................... len:21 al:1
.........................................................CAUUGUUGUGCUGCC.................... len:15 al:1
.........................................................CAUUGUUGUGCUGCu.................... len:15 al:3