Genome: /home/shared/8TB_HDD_01/sam/gitrepos/deep-dive/D-Apul/data/Amil/ncbi_dataset/data/GCF_013753865.1/GCF_013753865.1_Amil_v2.1_genomic.fa
Alignments: /home/shared/8TB_HDD_01/sam/gitrepos/deep-dive/D-Apul/output/13.1-Apul-sRNAseq-ShortStack-R1-reads/ShortStack_out/merged_alignments.bam
Location: NC_058070.1:26873978-26874068 plus
Post-script file name: /home/shared/8TB_HDD_01/sam/gitrepos/deep-dive/D-Apul/output/13.1-Apul-sRNAseq-ShortStack-R1-reads/ShortStack_out/strucVis/Cluster_5031.ps
Locus Name: Cluster_5031
AUUUCAAUUAGCUAGGUCAGUGUUUGAACAGUCCAAGUAGCAGUUAUUGUUCUUUGCACUGUUCAAACCCUGCCCCAUCUAGCCAUUUGGG
...((((...((((((((((.(((((((((((.((((.((((.....)))).)))).))))))))))).)))....)))))))...)))). (-32.70)
..................AGUGUUUGAACAGUCCAAGUAGCg................................................. len:24 al:1
..................AGUGUUUGAACAGUCCAAGUAGC.................................................. len:23 al:1
..................AGUGgUUGAACAGUCCAAGUAGC.................................................. len:23 al:1
..................AGUGUUUGAACAGUCCAAGUAGu.................................................. len:23 al:1
..................AGUGUUUGAACAGUCCAAGUA.................................................... len:21 al:2
..................AGUGUUUGAACAGUCCgAGU..................................................... len:20 al:1
...................cUGUUUGAACAGUCCAAGUAGC.................................................. len:22 al:3
...................GUGUUUGAACAGUCCAAGUAGCA................................................. len:23 al:2
....................UGUUUGAACAGUCCAAGUAGCg................................................. len:22 al:3
....................UGUUUGAACAGUCCAAGUA.................................................... len:19 al:1
....................UGUUUGAACAGUCCAgGU..................................................... len:18 al:2
....................UGUUUGAACAGUCCAAGUAGCu................................................. len:22 al:2
....................UGUUUGAgCAGUCCAAGUAGC.................................................. len:21 al:1
....................UGUUUGAACAGUCCgAGUAGC.................................................. len:21 al:1
....................UGUUUGAACAGUCCAAGUAGa.................................................. len:21 al:1
....................UGUUUGAACAGUCCAAGUAaC.................................................. len:21 al:1
....................UGUUUGAACAGUCCAAGU..................................................... len:18 al:8
....................UGUUUGAACAGUCCAAGUAGC.................................................. len:21 al:15
....................UGUUUGAACAGUCCAAGc..................................................... len:18 al:3
....................UGUUUGAACAGUCCAAGUAGu.................................................. len:21 al:4
....................UGUUUGAACAGUCCAAGUAGCA................................................. len:22 al:15
.....................GUUUGAACAGUCCAAGUAGCA................................................. len:21 al:2
......................UUUGAACAGUCCAAGUAGCAGUUAUUGUU........................................ len:29 al:1
......................UUUGAACAGUCCAAGUAGCA................................................. len:20 al:1
......................UUUGAACAGUCuAAGUAGCAGUUAUU........................................... len:26 al:1
......................UUUGAACAGUCCAAGUAGCAGUUAU............................................ len:25 al:1
......................UUUGAACAGUCCAAGUAGC.................................................. len:19 al:2
.........................................AGUUAUUGUUCUUUGCACUGUUCAAAuCCUG................... len:31 al:1
............................................UAUUGUUCUUUGCACUGUUCAAACCCU.................... len:27 al:1
.................................................UUCUUUGCACUGUUCAAAuCCU.................... len:22 al:15
.................................................UUCUUUGCACUGUUCAAACCCUGCu................. len:25 al:26
.................................................UUCUUUGCACUGUUCAAcCCCU.................... len:22 al:1
.................................................UUCUUUGCACUGUUCAAACuCU.................... len:22 al:1
.................................................UUCUUUGuACUGUUCAAACCC..................... len:21 al:1
.................................................UUCUUUcCACUGUUCAAACCCU.................... len:22 al:1
.................................................UUCUUUGCACUGUUCAAACaCU.................... len:22 al:2
.................................................UUCUaUGCACUGUUCAAACCCU.................... len:22 al:1
.................................................UUCUUUGCACUGUUCAuACCCU.................... len:22 al:1
.................................................UUCUUUGCACUGUUCAAACCCUc................... len:23 al:12
.................................................UUCUUUGCACUGUUCAAACCu..................... len:21 al:58
.................................................UUCUUUGCACUGUUCAAgCCCU.................... len:22 al:3
.................................................UUCUUUGCACUGUcCAAACCCU.................... len:22 al:4
.................................................UUCUUUGCACUGUUCAAACCCU.................... len:22 al:880
.................................................UUCUUUGCACUGUUCAAAuCCUG................... len:23 al:18
.................................................UUCUUUGCACUGUUCAAACCCUGu.................. len:24 al:410
.................................................UUCUUUGCACUGUUCAAAuCC..................... len:21 al:6
.................................................UUCUUUGCACUGUUCAAACuC..................... len:21 al:1
.................................................UUCUUUGCACUGUUCAAACCCUu................... len:23 al:92
.................................................UUCUUUGCgCUGUUCAAACCC..................... len:21 al:1
.................................................UUCUUUGCAuUGUUCAAACCCU.................... len:22 al:2
.................................................UUCUUUGCACUGUUCAAACCCUa................... len:23 al:43
.................................................UUCUUUGCACUGUUCAAACa...................... len:20 al:3
.................................................UUCUUUGCACUGUUCgAACCCUGC.................. len:24 al:2
.................................................UUCUUcGCACUGUUCAAACCC..................... len:21 al:1
.................................................UUCUUUGCACUGUUCAAACCCUuC.................. len:24 al:7
.................................................UUCUUcGCACUGUUCAAACCCU.................... len:22 al:4
.................................................cUCUUUGCACUGUUCAAACCC..................... len:21 al:1
.................................................UUCUUUGuACUGUUCAAACCCU.................... len:22 al:1
.................................................UUCUUUGCACUGUUCAAACCuU.................... len:22 al:9
.................................................UUCUUUGCACUGUUCAA......................... len:17 al:2
.................................................UUCUUUGCACUGUUCAAACCCUGCCa................ len:26 al:2
.................................................UaCUUUGCACUGUUCAAACCCU.................... len:22 al:1
.................................................UUCUUUGCACUGUUCAAACCg..................... len:21 al:4
.................................................UUCUUUGCACaGUUCAAACCC..................... len:21 al:1
.................................................UUCUUUGCACUGUUCAAACC...................... len:20 al:17
.................................................UUCUUUGCgCUGUUCAAACCCUGC.................. len:24 al:1
.................................................UUCUUUGCACcGUUCAAACCCUG................... len:23 al:1
.................................................UUCUUUGCACUGUUCAAACCaU.................... len:22 al:1
.................................................UUCUUUGCACUGUaCAAACCCU.................... len:22 al:1
.................................................aUCUUUGCACUGUUCAAACCCU.................... len:22 al:2
.................................................UUCUUUGCACUGUUCAAACCC..................... len:21 al:88
.................................................UUCUUUGCACUGUUCgAACCCU.................... len:22 al:4
.................................................UUuUUUGCACUGUUCAAACCCU.................... len:22 al:1
.................................................UUCUcUGCACUGUUCAAACCCU.................... len:22 al:2
.................................................UUCUUUGCACUGUUC........................... len:15 al:6
.................................................UUCUUUGCACUGUUCAAACCCc.................... len:22 al:200
.................................................UUCUUUGCACUGUUCAAACCCcG................... len:23 al:2
.................................................UUCUUUGCACUGUUCAAAuCCUGC.................. len:24 al:5
.................................................UUCUUUGCACUGUUCAAACCCUGg.................. len:24 al:6
.................................................UUCUaUGCACUGUUCAAACCC..................... len:21 al:1
.................................................UUCUUUGCACUGUUCAAACCCUGC.................. len:24 al:128
.................................................UUCUUUGCACUGUUCAAA........................ len:18 al:1
.................................................UUCUUcGCACUGUUCAAACCCUG................... len:23 al:2
.................................................UUCUUUGCACUGcUCAAACCCU.................... len:22 al:1
.................................................UUCUUUGCACUGUcCAAACCCUGC.................. len:24 al:1
.................................................UUCUUUGCACUGUUCAAACCCUGa.................. len:24 al:25
.................................................UUCUUUGCgCUGUUCAAACCCU.................... len:22 al:3
.................................................UUCcUUGCACUGUUCAAACCC..................... len:21 al:1
.................................................UUCUUUGCACUGUUCAAACCCUGuC................. len:25 al:5
.................................................UcCUUUGCACUGUUCAAACCC..................... len:21 al:1
.................................................UUCUUUGCACUGUUCAAACCCUGCa................. len:25 al:13
.................................................UUCUUUGCACUGUUCAAACCCUG................... len:23 al:85
.................................................UUCUUUGCACUGUUCAAACCCg.................... len:22 al:34
.................................................UUCcUUGCACUGUUCAAACCCU.................... len:22 al:3
.................................................UUCUUUGCACUGUUCAAACCCUGCC................. len:25 al:6
.................................................UUCUUUGCACUGcUCAAACC...................... len:20 al:1
.................................................UUCUUUGCACUGUUCAgACCCU.................... len:22 al:1
.................................................UUCUUUGCACUGUUCAAACCCUGCuC................ len:26 al:4
.................................................UUCUUUGCACcGUUCAAACCCU.................... len:22 al:3
.................................................UUCcUUGCACUGUUCAAACCCUG................... len:23 al:2
.................................................UUCUUUGCACUGUUCAAACu...................... len:20 al:8
.................................................UUCUUUGCAuUGUUCAAACCCUG................... len:23 al:2
.................................................UcCUUUGCACUGUUCAAACCCU.................... len:22 al:4
.................................................UUCUUUGCACUaUUCAAACCCU.................... len:22 al:3
.................................................UUCUUUGCACUGUUCAAAC....................... len:19 al:3
.................................................UUCUUUGCACUGUUCAAACCCa.................... len:22 al:204
.................................................UUCUUUGCACUGUUCAAACCa..................... len:21 al:38
.................................................cUCUUUGCACUGUUCAAACCCU.................... len:22 al:10
..................................................UCUUUGCACUGUUCAAACCCUGCu................. len:24 al:1
..................................................UCUUUGCACUGUUCAAACCCUu................... len:22 al:1
..................................................UCUcUGCACUGUUCAAACCCU.................... len:21 al:1
..................................................UCUUUGCACUGUUCAAACCCUGCa................. len:24 al:1
..................................................UCUUUGCACUGUUCgAACCCUGC.................. len:23 al:1
..................................................UCUUUGCACUGUUCAAACCCc.................... len:21 al:2
..................................................UCUUUGCACUGUUCAAACCCU.................... len:21 al:11
..................................................UCUUUGCACUGUUCAAACCCUGCuC................ len:25 al:1
..................................................UCUUUGCACUGUUCAAACCCUGC.................. len:23 al:3
..................................................UCUUUGCACUGUUCAAACCCUa................... len:22 al:1
..................................................UCUUUGCACUGUUCAAACCCUGa.................. len:23 al:3
..................................................UCUUUGCACUGUUCAAACCCUGu.................. len:23 al:6
..................................................UCUUUGCACUGUUCAAACCCUGg.................. len:23 al:1
...................................................CUUUGCACUGUUCAAACC...................... len:18 al:2
...................................................CUUUGCACUGUUCAAACCCUG................... len:21 al:1
...................................................CUUUGCACUGUUCAAACu...................... len:18 al:3
...................................................CUUcGCACUGUUCAAACCCU.................... len:20 al:3
...................................................CUUUGCACUGUUCAAACCCU.................... len:20 al:42
...................................................CUUUGCACUGUUCAAACCCg.................... len:20 al:1
...................................................CUUUGCACUGUUCAAACCCUu................... len:21 al:3
...................................................CUUUGCACUGUUCAAACCCUa................... len:21 al:2
...................................................CUUUGCACUGUUCAAAuCCU.................... len:20 al:2
...................................................CUUUGCACUGUUCAAACCCa.................... len:20 al:14
...................................................CUUUGCACUGUUCgAACCCU.................... len:20 al:1
...................................................CUUUGCACUGUUCAAACCu..................... len:19 al:1
...................................................CUUUGCACUGUUCAAACa...................... len:18 al:1
...................................................CUUUGCACUGUUCAAACCaU.................... len:20 al:1
...................................................CUUUGCACUGUUCAAACCCc.................... len:20 al:5
...................................................CUUUGCACUGUUCAAACCuU.................... len:20 al:2
...................................................CUUUGCACUGUUCAAACCCUGu.................. len:22 al:7
...................................................CUUUGCACUGUUCAAACCa..................... len:19 al:2
...................................................CUUUGCACUGUUCAAACCC..................... len:19 al:1
....................................................UUUGCACUGUUCAAACCCc.................... len:19 al:1
.....................................................UUGCACUGUUCAAACCCc.................... len:18 al:1
.....................................................UUGCACUGUUCAAACCCUc................... len:19 al:1
.....................................................UUGCACUGUUCAAACCCU.................... len:18 al:1
.....................................................UUGCACUGUUCAAACCCa.................... len:18 al:2
.....................................................UUGCACUGUUCAAACCCUa................... len:19 al:1
.....................................................UUGCACUGUUCAAACCCUGu.................. len:20 al:3
......................................................UGCACUGUUCAAACCC..................... len:16 al:2
......................................................UGCACUGUUCAAAuCCU.................... len:17 al:1
......................................................UGCACUGUUCAAACCCUu................... len:18 al:1
.......................................................GCACUGUUCAAACCCU.................... len:16 al:1
.......................................................GCACUGUUCAAACCC..................... len:15 al:1