Genome: /home/shared/8TB_HDD_01/sam/gitrepos/deep-dive/D-Apul/data/Amil/ncbi_dataset/data/GCF_013753865.1/GCF_013753865.1_Amil_v2.1_genomic.fa
Alignments: /home/shared/8TB_HDD_01/sam/gitrepos/deep-dive/D-Apul/output/13.1-Apul-sRNAseq-ShortStack-R1-reads/ShortStack_out/merged_alignments.bam
Location: NC_058069.1:21012147-21012242 minus
Post-script file name: /home/shared/8TB_HDD_01/sam/gitrepos/deep-dive/D-Apul/output/13.1-Apul-sRNAseq-ShortStack-R1-reads/ShortStack_out/strucVis/Cluster_3805.ps
Locus Name: Cluster_3805
UGAUUCAAGACUAUGUACUCAGCUUUCGCGGGAUAAAAACUCCUUCAUGUGAAUUUUUAGCCCGCGGAAGUUGCGUAAGUAUGUCACAUUCCACCA
........((((((.(((.(((((((((((((.((((((.(((.....).)).)))))).))))))))))))).))).))).)))........... (-34.60)
....................AGCUUUCGCGGGAUAAAAACUCa..................................................... len:23 al:26
....................AGCUUUCGuGGGAUAAAAACU....................................................... len:21 al:1
....................AGCUUUCGCGGuAUAAAAACUCC..................................................... len:23 al:1
....................AGCUUUCGCGGGAUAAAAACcC...................................................... len:22 al:1
....................AGCUUUCGCaGGAUAAAAAC........................................................ len:20 al:1
....................AGCUUUgGCGGGAUAAAAACUC...................................................... len:22 al:1
....................AGCUUUCGCGGGAUAAAAAuU....................................................... len:21 al:1
....................AGCUUUCGCGGGAUAAAAACc....................................................... len:21 al:8
....................uGCUUUCGCGGGAUAAAAACUC...................................................... len:22 al:2
....................AGCUUUCGCGGGAUAAAAACUCu..................................................... len:23 al:12
....................AGCUUUCGCGGGAUAAAAAC........................................................ len:20 al:1
....................AGCUUUCGCGGGAUA............................................................. len:15 al:1
....................AGCUUUCGCGGGAUAAAAACUCg..................................................... len:23 al:1
....................AGCUUUCGCGGGAUAAAAACUCC..................................................... len:23 al:9
....................AGCUUUCGCaGGAUAAAAACUCC..................................................... len:23 al:1
....................gGCUUUCGCGGGAUAAAAACUC...................................................... len:22 al:3
....................AGCUUUCGCGGGAUAAAgACUC...................................................... len:22 al:1
....................AGCUUUCGCaGGAUAAAAACU....................................................... len:21 al:1
....................AGCUUUCGCGGGAUAAAAACUCuU.................................................... len:24 al:1
....................AGCUUUCGCGGGAUAAAAgCUC...................................................... len:22 al:1
....................gGCUUUCGCGGGAUAAAAACU....................................................... len:21 al:1
....................AGCUUUCGCGGGAUAA............................................................ len:16 al:1
....................AGCUUUCGCGGGAUAAAAACUa...................................................... len:22 al:2
....................AGCUUUCGCGGGAUAAAAACg....................................................... len:21 al:1
....................AGCUUUCGCGGGAUAAAAACUCaUU................................................... len:25 al:1
....................AGCUUUCGCGGGAUAAAAACU....................................................... len:21 al:47
....................AGCUUUCGCGGGAUAAAAACUC...................................................... len:22 al:62
....................AGCUUUCGCGGGAUAAAA.......................................................... len:18 al:1
....................AGCUUUCGCGGGAUAAAAACUu...................................................... len:22 al:2
....................AGCUUUCGCGGGAUAAAAACa....................................................... len:21 al:4
...........................................UUCAUGUGAAUUUUUAGCCCGCGGAAGUUGC...................... len:31 al:1
...................................................AAUUUUUAGCCCGCGGAAGUUGu...................... len:23 al:1
...................................................AAUUUUUAGCCCGCGGAAGUUGCu..................... len:24 al:5
...................................................AuUUUUUAGCCCGCGGAAGUUGC...................... len:23 al:1
...................................................AAUUUUUAGCCCGCGGAAGUUGC...................... len:23 al:6
...................................................AAUUUUUAGCCCGCGGAAGUUG....................... len:22 al:1
....................................................AUcUUUAGCCCGCGGAAGUUGC...................... len:22 al:5
....................................................gUUUUUAGCCCGCGGAAGUUGC...................... len:22 al:10
....................................................AUUUUUAGCCCGCGGAAGUUGa...................... len:22 al:93
....................................................AUUUUUAGCCCGCGGAAGUUa....................... len:21 al:8
....................................................AUUaUUAGCCCGCGGAAGUUGC...................... len:22 al:4
....................................................AUUUUUAGCCCGCGGAAGUUGu...................... len:22 al:748
....................................................gUUUUUAGCCCGCGGAA........................... len:17 al:1
....................................................AUUUgUAGCCCGCGGAAGUUGCG..................... len:23 al:1
....................................................AUUUUUAGCCCGCGGAAGUUGCuUA................... len:25 al:43
....................................................AUUcUUAGCCCGCGGAAGUUGC...................... len:22 al:2
....................................................AUUUUUAGCCCGCaGAAGUUG....................... len:21 al:1
....................................................uUUUUUAGCCCGCGGAAGUUGC...................... len:22 al:7
....................................................AUUUUaAGCCCGCGGAAGUUGC...................... len:22 al:1
....................................................AUUUUUAGCCCGCGGAAGU......................... len:19 al:53
....................................................AUUUUUAGCCCGCGGAAuUUGCG..................... len:23 al:1
....................................................AUUUUUAGCCCGCGGAAaUUGC...................... len:22 al:2
....................................................cUUUUUAGCCCGCGGAAGUUGC...................... len:22 al:1
....................................................AUUUUUAGCuCGCGGAAGUUGC...................... len:22 al:2
....................................................AUUUUUAGCCCGCGGAAGUUaC...................... len:22 al:7
....................................................AUUUUUAGCCCGCGGAgGUUGCG..................... len:23 al:5
....................................................AUUUUUAGCCCGCGGAAGUgG....................... len:21 al:1
....................................................AUUUUUAGCCCGCGGAAGUUGCG..................... len:23 al:338
....................................................AUUUUUAGCCCGCGGAAGUUGCaU.................... len:24 al:175
....................................................AUUUUUAGCCCGCGGAAGUU........................ len:20 al:42
....................................................AUUUUUAaCCCGCGGAAGUUGC...................... len:22 al:1
....................................................AUUUUUAGCCCaCGGAAGUUGC...................... len:22 al:1
....................................................AUUUcUAGCCCGCGGAAGUUGC...................... len:22 al:1
....................................................AUUUUUAGCCCGCGGAAGUUGCGU.................... len:24 al:4
....................................................AUUUUUAGCCCGCGGAAGUUc....................... len:21 al:9
....................................................AUUgUUAGCCCGCGGAAGUUGCG..................... len:23 al:1
....................................................AUUUUUgGCCCGCGGAAGUUGC...................... len:22 al:1
....................................................AUUUUUAGCCCGCGGAgGUUGC...................... len:22 al:1
....................................................AUUUUUAGCCCGCGGAAG.......................... len:18 al:5
....................................................AUUUUUAuCCCGCGGAAGUUGCG..................... len:23 al:1
....................................................AUUUUUAGCCuGCGGA............................ len:16 al:1
....................................................AUUUUUAGCCCGCGGAAGUUGCc..................... len:23 al:1503
....................................................AUUUUUAGCCCGCGGAAGUUGCuU.................... len:24 al:271
....................................................AUcUUUAGCCCGCGGAAGUUGCG..................... len:23 al:1
....................................................AUUUUUAGCCCGCGGAAGUUGCa..................... len:23 al:1910
....................................................AUUUUUAGCCCGCGGAcGUUGCG..................... len:23 al:1
....................................................AUUUUUAGCCCGCGGAAGUUGC...................... len:22 al:1283
....................................................AUUUUUAGCCCGCGGuAGUUGC...................... len:22 al:1
....................................................AUUUUUAGCCCGCGGAAGUUG....................... len:21 al:76
....................................................AUUUUUAGCCCGCGGAA........................... len:17 al:2
....................................................AUUUUUAGCCCGCGGAAGUUGCGc.................... len:24 al:2
....................................................AUUUUUAGCCCGCGGAAGUUGg...................... len:22 al:15
....................................................AUUUUUAGCCCGCGGAAGUc........................ len:20 al:6
....................................................AUUUUUAGCCCGCGGAAGUUGCcU.................... len:24 al:18
....................................................AUUUUUAGCCCGCGG............................. len:15 al:1
....................................................AUUUUUAGCCCGCGGAAGUa........................ len:20 al:3
....................................................AUUUUUAGCCCGCGGAAGc......................... len:19 al:8
....................................................AUUUUUAGCCCGCGGA............................ len:16 al:38
....................................................AUUUUUAGCCCGCGGAAGUUGCu..................... len:23 al:7155
....................................................AUUUUUAGaCCGCGGAAGUUGCG..................... len:23 al:1
....................................................AUUUUUAGCCCGCGGAAGgUGC...................... len:22 al:2
....................................................AUUUUUAGCCuGCGGAAGUUGC...................... len:22 al:1
....................................................AUUUUUAGCCCGuGGAAGUUG....................... len:21 al:1
....................................................AUcUUUAGCCCGCGGAAGUUG....................... len:21 al:2
....................................................AUUUUUAGCCCGCGGgAGUUG....................... len:21 al:1
....................................................AUUUUUAGCCCGCGGAAGcUGC...................... len:22 al:6
....................................................cUUUUUAGCCCGCGGAAGUUGCG..................... len:23 al:1
....................................................AUUUgUAGCCCGCGGAAGUUGC...................... len:22 al:1
....................................................AUUUUUAGCCCGCGGgAGUUGC...................... len:22 al:1
....................................................AcUUUUAGCCCGCGGAAGUUGC...................... len:22 al:4
....................................................AUUUUaAGCCCGCGGAAGUUGCG..................... len:23 al:1
....................................................AcUUUUAGCCCGCGGAAGUUGCG..................... len:23 al:1
....................................................uUUUUUAGCCCGCGGAAGU......................... len:19 al:1
....................................................AUUUUUAGCCCGCGGAAGUUGCaUA................... len:25 al:40
....................................................AUUUUUAGCCCGCGGAAuUUGC...................... len:22 al:3
....................................................AUUUUUAGCCCGCGGAAGUcGCG..................... len:23 al:1
....................................................AUUUUcAGCCCGCGGAAGUUGC...................... len:22 al:4
....................................................AUUUUUAGCCCGCGGAAGUcGC...................... len:22 al:5
....................................................gUUUUUAGCCCGCGGAAGUUG....................... len:21 al:2
....................................................AUUUgUAGCCCGCGGAAGU......................... len:19 al:1
....................................................AUUUUUAGCCCaCGGAAGUUGCG..................... len:23 al:1
....................................................AUgUUUAGCCCGCGGAAGUUGC...................... len:22 al:1
....................................................AUUUUUAGCCCGCGGu............................ len:16 al:1
....................................................AUUUUUAGCCCGCGGAAGgU........................ len:20 al:1
....................................................AUUUcUAGCCCGCGGAAGUUGCG..................... len:23 al:1
....................................................AUUUUUAGCCCGuGGAAGUUGC...................... len:22 al:2
....................................................AUUUaUAGCCCGCGGAAGUUGC...................... len:22 al:1
....................................................AUUUUUAGCCCGCGGAAGg......................... len:19 al:2
....................................................AUUUUUAGCCCGCGGgAGUUGCG..................... len:23 al:2
....................................................gUUUUUAGCCCGCGGA............................ len:16 al:1
....................................................AUUUUUAGCCCGCGGAAGa......................... len:19 al:3
....................................................AUUUcUAGCCCGCGGAAGU......................... len:19 al:1
....................................................AUUUUUAGCCCGCGGAAGUUcC...................... len:22 al:2
.....................................................UUUUUAGCCCGCGGAAGUUGCa..................... len:22 al:105
.....................................................UUUUUAGCCCGCGGAAGUUGCuU.................... len:23 al:9
.....................................................UUUUUAGCCCGCGGAAGUUGCcU.................... len:23 al:1
.....................................................UUUUUAGCCCGCGGAAGUUGC...................... len:21 al:34
.....................................................gUUUUAGCCCGCGGAAGUUGC...................... len:21 al:1
.....................................................UUUUUAGCCCGCGGAAGUUGCu..................... len:22 al:452
.....................................................UUUUUAGCCCGCGGAAGUUGu...................... len:21 al:21
.....................................................UUUaUAGCCCGCGGAAGUUGC...................... len:21 al:1
.....................................................UUUUUAGCCCGCGGAAGUUG....................... len:20 al:1
.....................................................UUUUUAGCCCGCGGAAGU......................... len:18 al:3
.....................................................UUUUUAGCCCGCGGAAGUUGCc..................... len:22 al:114
.....................................................aUUUUAGCCCGCGGAAGUUGC...................... len:21 al:2
.....................................................UUUUUAGCCCGCGGAAGUUGCG..................... len:22 al:22
.....................................................UUUUUuGCCCGCGGAAGU......................... len:18 al:1
.....................................................UUUUUAGCCCGCGGAAGUUGa...................... len:21 al:3
.....................................................UUUUUAGCCCGCGGAAGUUGCaU.................... len:23 al:6
.....................................................UUUUUAGCCCGCGGAAGUU........................ len:19 al:2
......................................................UUUUAGCCCGCGGAAGUUGu...................... len:20 al:5
......................................................UUUUAGCCCGCGGAAGUUGCc..................... len:21 al:52
......................................................UUUUAGCCCGCGGAAGUUGC...................... len:20 al:12
......................................................UUUUAGCCCGCGGAAGUUG....................... len:19 al:3
......................................................UUUUAGCCCGCGGAAGUUGCaUA................... len:23 al:1
......................................................UUUUAGCCCGCGGAAGUUGCuU.................... len:22 al:7
......................................................UUUUAGCCCGCGGAAGUUGCG..................... len:21 al:4
......................................................UUUUAGCCCGCGGAAGUUGa...................... len:20 al:2
......................................................UUUUAGCCCGCGGAAGUUGCa..................... len:21 al:32
......................................................UUUUAGCCCGCGGAAGUUGCu..................... len:21 al:131
.......................................................UUUAGCCCGCGGAAGUUGCuU.................... len:21 al:2
.......................................................UUUAGCCCGCGGAAGUUGCc..................... len:20 al:3
.......................................................UUUAGCCCGCGGAAGUUGCu..................... len:20 al:12
.......................................................UUUAGCCCGCGGAAGUUGCa..................... len:20 al:4
........................................................UUAGCCCGCGGAAGUUGu...................... len:18 al:1
.........................................................UAGCCCGCGGAAGUUGCu..................... len:18 al:1
......................................................................UUGCGUAAGUAUuUCA.......... len:16 al:1