Genome: /home/shared/8TB_HDD_01/sam/gitrepos/deep-dive/D-Apul/data/Amil/ncbi_dataset/data/GCF_013753865.1/GCF_013753865.1_Amil_v2.1_genomic.fa
Alignments: /home/shared/8TB_HDD_01/sam/gitrepos/deep-dive/D-Apul/output/13.1-Apul-sRNAseq-ShortStack-R1-reads/ShortStack_out/merged_alignments.bam
Location: NC_058066.1:12757125-12757218 minus
Post-script file name: /home/shared/8TB_HDD_01/sam/gitrepos/deep-dive/D-Apul/output/13.1-Apul-sRNAseq-ShortStack-R1-reads/ShortStack_out/strucVis/Cluster_323.ps
Locus Name: Cluster_323
AUGCUUUACUCCUUUGGGAGGGAGGUUAGUGCAGAGGUCAUCGUUAUUGAUGAUCUCUGCAAUAGCCUGCCUCCCAAAGGAGUUCUACUAGUCC
.......((((((((((((((.((((((.((((((((((((((....)))))))))))))).)))))).))))))))))))))........... (-61.60)
....................GGAGGUUAGUGCAGAGGUCAcC.................................................... len:22 al:3
....................GGAGGUUAGUGCAGAGGUCAgC.................................................... len:22 al:1
....................GGAGGUUAGUGCgGAGGUCAUC.................................................... len:22 al:2
....................GGAGGUUAGUGCAGAGGUCAUCu................................................... len:23 al:42
....................GGAGGUUAGUGCAGAGGUCAU..................................................... len:21 al:5
....................GGAGGUUAGUGCAGAGGUCAUCa................................................... len:23 al:11
....................GGAGGcUAGUGCAGAGGUCAUC.................................................... len:22 al:1
....................GGAGGUUAGUGCAGAGGU........................................................ len:18 al:4
....................GGAGGUUAGUGCAGAGGUCAUu.................................................... len:22 al:8
....................GGAGGUUAGUGCAGAGGUCAUCuU.................................................. len:24 al:3
....................cGAGGUUAGUGCAGAGGUCAUC.................................................... len:22 al:1
....................GGAGGUUAGUGCAGAGGUCAUCc................................................... len:23 al:16
....................GGAGGUUAGUGCAGAGGUCgUC.................................................... len:22 al:1
....................GGAGGUUAGUGCAGAGGUCAUCG................................................... len:23 al:2
....................GGAGGUUAGUGCAGAGGUCA...................................................... len:20 al:1
....................GGAGGUUAGUGCAGAGGaCAUC.................................................... len:22 al:2
....................GGAGGUUAGUGgAGAGGUCAUC.................................................... len:22 al:1
....................GGAGGUUAGUGCAGAGGUCAUCuUU................................................. len:25 al:1
....................GGAGGUUAGUGCAGAGGUCAUC.................................................... len:22 al:65
......................AGGUUAGUGCAGAGGUCAUCu................................................... len:21 al:1
......................AGGUUAGUGCAGAGGUCAUC.................................................... len:20 al:1
......................AGGUUAGUGCAGAGGUCAUCa................................................... len:21 al:1
.......................GGUUAGUGCAGAGGUCAUCa................................................... len:20 al:1
.........................................CGUUAUUGAUGAUCUCUGCAAUAGCCUGCuU...................... len:31 al:1
.........................................CGUUAUUGAUGAUCUCUGCAAUAGCCUGCCc...................... len:31 al:3
.........................................CGUUAUUGAUGAUCUCUGCAAUAGCCUGCCU...................... len:31 al:19
.........................................CGUUAUUGAUGAUCUCUGCAAUAGCCUGCCa...................... len:31 al:2
.........................................CGUUAUUGAUGAUCUCUGCAAUAGCCUaCCU...................... len:31 al:1
.........................................CGUUAUUGAUGAUCUCUGCAAUAGCCUGaCU...................... len:31 al:2
.........................................CGUUAUUGAUGAUCUCUGCAAUAGCCUGCCg...................... len:31 al:1
..........................................GUUAUcGAUGAUCUCUGCAAUAGCCUGCCU...................... len:30 al:1
..........................................GUUAUUGAUGAUCUCUGCAAUAGCCUGCu....................... len:29 al:1
..........................................GUUAUUGAUGAUCUCUGCAAUAGCCUGCCU...................... len:30 al:11
..........................................GUUAUUGAUGAUCUCUGCAAUAGCCUGCCg...................... len:30 al:1
..........................................GUUAUUGAUGAUCUCUGCAAUAGCCUGaCU...................... len:30 al:1
..........................................GUUAUUGAUGAUCUCUGCAAUAGCCUGCCc...................... len:30 al:1
............................................UAUUGAUGAUCUCUGCAAUAGCCUGCCU...................... len:28 al:1
.............................................AUUGAUGAUCUCUGCAAUAGCCUGCuU...................... len:27 al:1
..............................................UUGAUGAUCUCUGCAAUAGCCUGu........................ len:24 al:1
..............................................UUGAUGAUCUCUGCAAUAGCCUGCCU...................... len:26 al:2
...............................................UGAUGAUCUCUGCAAUAGCCUGCCU...................... len:25 al:1
.................................................AUGAUCUCUGCAAUAGCCUGCCUu..................... len:24 al:1
.................................................AUGAUCUCUGCAAUAGCCUGCu....................... len:22 al:2
.................................................AUGAUCUCUGCAAUAGCCUa......................... len:20 al:2
.................................................AUGAUCUCUGCAAUAGCCUGCCUC..................... len:24 al:1
..................................................UGAUCUCUGCAcUAGCCUGCCU...................... len:22 al:1
..................................................UGgUCUCUGCAAUAGCCUGCC....................... len:21 al:1
..................................................UGAUCUCUGCAAcAGCCUGC........................ len:20 al:2
..................................................UGAUCUCUGCgAUAGCCUGCCU...................... len:22 al:1
..................................................cGAUCUCUGCAAUAGCCUGCCUC..................... len:23 al:5
..................................................UGAUCUCUGCAAUAGCCaGCCUC..................... len:23 al:1
..................................................UGAUaUCUGCAAUAGCCUGCC....................... len:21 al:1
..................................................UGAUCUCUGCAAUgGCCUGCCUC..................... len:23 al:1
..................................................UGAUCUCUGCAAUAaCCUGCCU...................... len:22 al:1
..................................................UGAUCUCUGCuAUAGCCUGCCU...................... len:22 al:2
..................................................UuAUCUCUGCAAUAGCCUGCC....................... len:21 al:1
..................................................UGAUCUCUGCAAUAGCCg.......................... len:18 al:6
..................................................UGAUCUCUGCAAUAGCCUGCCUCu.................... len:24 al:133
..................................................UGAUCUCgGCAAUAGCCUGCCU...................... len:22 al:1
..................................................UGAUCUCUGCAAUAGCCUGCCg...................... len:22 al:47
..................................................UGAUCUCUGCAAUAGCCUuCCUC..................... len:23 al:1
..................................................UGAUCUCUGCAAcAGCCUGCCUC..................... len:23 al:5
..................................................UGAUCUCcGCAAUAGCCUGCCU...................... len:22 al:3
..................................................UGAUCUCUGCAAUAGCCUa......................... len:19 al:15
..................................................UGAUCUCUaCAAUAGCCUGCCU...................... len:22 al:1
..................................................UGgUCUCUGCAAUAGCCUGCCUC..................... len:23 al:4
..................................................UGAUCUCUGCAAUAGCCUGCCcC..................... len:23 al:12
..................................................UGAUCUCUGCAAUAGCCUG......................... len:19 al:33
..................................................UGAUCUCUGCAAUAGCC........................... len:17 al:6
..................................................UGAUaUCUGCAAUAGCCUGCCU...................... len:22 al:1
..................................................UGAUCUCUGCAAUAGCCUGuCUC..................... len:23 al:2
..................................................UGAUCUCUGCAAUAGCCUGCCUa..................... len:23 al:444
..................................................UGAUCUCUGCAAUAuCCUGCC....................... len:21 al:1
..................................................UGAUCUCUGCAAUAGCCUGCCUaC.................... len:24 al:64
..................................................UGAUCUCUaCAAUAGCCUGCC....................... len:21 al:3
..................................................UGAUCUCUGCAAUAGCCUcCCU...................... len:22 al:6
..................................................UGAUCUCUGCAAUAaCCUGCC....................... len:21 al:1
..................................................UGAUCUCUGCAAUAGCCUGu........................ len:20 al:110
..................................................UGAUCUCgGCAAUAGCCUGCCUC..................... len:23 al:1
..................................................UGAUCUCUGuAAUAGCCUGCCUC..................... len:23 al:1
..................................................UGAUCUCUGCAAaAGCCUGCC....................... len:21 al:1
..................................................UuAUCUCUGCAAUAGCCUGC........................ len:20 al:1
..................................................UGAUCUCUGCgAUAGCCUGCCUCC.................... len:24 al:1
..................................................UGAUCUCUGCAAUAGCuUG......................... len:19 al:1
..................................................UGAUCUCUGCAAUAGCuUGCCUC..................... len:23 al:2
..................................................UGAUCUCUGCAAUAGCCUGa........................ len:20 al:19
..................................................UGAUCcCUGCAAUAGCCUGCC....................... len:21 al:2
..................................................UGAUCUCUGCAAUAGCCUGCg....................... len:21 al:25
..................................................UGAUCUCUGCAgUAGCCUGCCU...................... len:22 al:4
..................................................UGAUCUCUGCAAUAGCCUGCCUCuC................... len:25 al:1
..................................................UGAUCUCUGCAAUAGCCcGCCU...................... len:22 al:6
..................................................UGAUCUCUGCAAUAGCCUGCCc...................... len:22 al:206
..................................................UGAUCUCUGCAAUAGCCUGCCUCCC................... len:25 al:1
..................................................UGAUCUCUGCAgUAGCCUGCCUC..................... len:23 al:2
..................................................UGAUCUCUGCAAUAGCaUGC........................ len:20 al:2
..................................................aGAUCUCUGCAAUAGCCUGC........................ len:20 al:1
..................................................UGAUCUCcGCAAUAGCCUGC........................ len:20 al:2
..................................................UGAUCUCUGCAAUAGCCUGCCaC..................... len:23 al:1
..................................................aGAUCUCUGCAAUAGCCUGCCU...................... len:22 al:2
..................................................UGcUCUCUGCAAUAGCCUGCCU...................... len:22 al:1
..................................................UGAUCUCUGCAAUAGCCUGCa....................... len:21 al:239
..................................................UGAUCUCUGCAAcAGCCUGCC....................... len:21 al:1
..................................................UGAUCUCUGCAAUAGCuU.......................... len:18 al:1
..................................................UGAUCUCUGCAAUAGCCUGCCUgC.................... len:24 al:2
..................................................aGAUCUCUGCAAUAGCCUGCC....................... len:21 al:1
..................................................UGAUCUCUGCAAUAGCCcGCC....................... len:21 al:5
..................................................UGAUCUCUGCAuUAGCCUGCCUC..................... len:23 al:1
..................................................UGAUCcCUGCAAUAGCCUGC........................ len:20 al:2
..................................................UGAUCUCUGCAAUAGCCaGCC....................... len:21 al:1
..................................................UGAUCUCUGCAAUAGCCUGCCUC..................... len:23 al:562
..................................................UGAUCUCUGCAAcAGCCUGCCU...................... len:22 al:3
..................................................UGAUCUCcGCAAUAGCCUGCCUC..................... len:23 al:1
..................................................UGAUuUCUGCAAUAGCCUGCC....................... len:21 al:2
..................................................UGAUCUCUGCAAUAaCCUGCCUC..................... len:23 al:1
..................................................UGAUCcCUGCAAUAGCCUGCCUC..................... len:23 al:3
..................................................UGAUCUCUGCAAUAGCa........................... len:17 al:2
..................................................UGAUCUCUGCAAUAGuCUGCCUC..................... len:23 al:2
..................................................UGAUCUCUGuAAUAGCCUGCCU...................... len:22 al:1
..................................................UGAUCUCUGCAAUAGCCa.......................... len:18 al:16
..................................................UGAUCUCUGCAAUAGCu........................... len:17 al:8
..................................................UGAUCUCUGCAAUAGCCUuCC....................... len:21 al:1
..................................................UGAUCUCUGCAgUAGCCUGC........................ len:20 al:1
..................................................UGAUCUCUGaAAUAGCCUGCC....................... len:21 al:1
..................................................UGAUCUCUGCAAUAGCCUaC........................ len:20 al:1
..................................................UGAUCUCUGCAAUAGCCUGCCUu..................... len:23 al:2958
..................................................UGAUCUCUaCAAUAGCCUGC........................ len:20 al:1
..................................................UGAUCUCUGCAAUAGCCUGCC....................... len:21 al:497
..................................................UGAUCUCUGCAAUAGCCUGuC....................... len:21 al:13
..................................................UGAUCUCUGCAAUAGCgUGCCU...................... len:22 al:1
..................................................UGAUCUCUGCAAUAGCCUGaC....................... len:21 al:2
..................................................UGAUCUCUGCAAUAGCuUGCC....................... len:21 al:2
..................................................UGAUCUCUGCAAUAG............................. len:15 al:1
..................................................UGAUCUCUGCAAUAGCCUGCCU...................... len:22 al:850
..................................................UaAUCUCUGCAAUAGCCUGCC....................... len:21 al:2
..................................................UGAUCUCUGCAAUAGu............................ len:16 al:1
..................................................UGAUCUCUGCAAUAGCCUGCCUuCC................... len:25 al:2
..................................................UGAUCUCUGCAAUAGCCUGCCUg..................... len:23 al:44
..................................................UGAUCUCUGCAAUgGCCUGCCU...................... len:22 al:1
..................................................UGAUCUCUGCAAUAGCCUGCCgC..................... len:23 al:2
..................................................UaAUCUCUGCAAUAGCCUGCCU...................... len:22 al:3
..................................................cGAUCUCUGCAAUAGCCUGCCU...................... len:22 al:4
..................................................UGAUCUCUGCAAUAGCCUGC........................ len:20 al:164
..................................................UGAUCUCUGCAAUAGCCUGCaU...................... len:22 al:8
..................................................cGAUCUCUGCAAUAGCCUGCC....................... len:21 al:2
..................................................UGAUCUCUGCAAUAGCCUGCCUCa.................... len:24 al:23
..................................................UGAUCUCUGCAAUAGCCUGCCUuC.................... len:24 al:535
..................................................gGAUCUCUGCAAUAGCCUGCCU...................... len:22 al:1
..................................................UGAUCUCUGCAAUAGCCUGCCUCC.................... len:24 al:18
..................................................UGAcCUCUGCAAUAGCCUGCCUC..................... len:23 al:1
..................................................UGAUCUCUGCAAUAGCCU.......................... len:18 al:61
..................................................UGAUCUCUGCAAUAGCCUGCCUCg.................... len:24 al:7
..................................................UGAUCUCUGCAAUAGCCUu......................... len:19 al:3
..................................................UGAUCUCUGCAAUAGCCUGCCa...................... len:22 al:218
..................................................UGAUCUCUGCAAUAGCCc.......................... len:18 al:13
..................................................UGuUCUCUGCAAUAGCCUGCCU...................... len:22 al:1
..................................................UGAUCUCUGCAAUAGCCUGCuU...................... len:22 al:13
..................................................UGAUCUCUGCAAUAGCCUGCu....................... len:21 al:454
..................................................UGAUCUCUGCAgUAGCCUGCC....................... len:21 al:2
..................................................UGAUCUCUGCAAUAGCCUcC........................ len:20 al:1
..................................................UGAUCUCUGCAAUAcCCUGCCU...................... len:22 al:1
..................................................UGAUCUCUGCAAUAGCCUGg........................ len:20 al:3
..................................................UGAUCUCUGCAAUAcCCUGCC....................... len:21 al:2
..................................................aGAUCUCUGCAAUAGCCUGCCUC..................... len:23 al:1
..................................................UGAUCUCUGCcAUAGCCUGCCUC..................... len:23 al:1
..................................................UGgUCUCUGCAAUAGCCUGCCU...................... len:22 al:1
..................................................UGAUCUCUGCAAUAGuCUGCCU...................... len:22 al:1
..................................................UGAUCcCUGCAAUAGCCUGCCU...................... len:22 al:6
..................................................UGAUuUCUGCAAUAGCCUGCCU...................... len:22 al:1
..................................................UGAUCUCUGCAAUAGCCUc......................... len:19 al:2
..................................................UGAUCUCUGCAAUAGCCcGCCUC..................... len:23 al:2
..................................................UGAUCUCUGCAAUAGC............................ len:16 al:4
..................................................UGAcCUCUGCAAUAGCCUGCCU...................... len:22 al:6
..................................................UGAUCUCUGCAAUAGCCUGCCUCCa................... len:25 al:1
..................................................UGAUCUCUGCAAUAGCuUGCCU...................... len:22 al:1
..................................................UGAUCUCUGCAAUAGCCUGgCU...................... len:22 al:1
...................................................GAUCUCUGCAAUAGCCUGCCU...................... len:21 al:1
...................................................GAUCUCUGCAAUAGCCUGCCUaC.................... len:23 al:1
...................................................GAUCUCUGCAAUAGCCUGCCa...................... len:21 al:1
...................................................GAUCUCUGCAAUAGCCUGCCUu..................... len:22 al:3
.......................................................UCUGCAAUAGCCUGCCU...................... len:17 al:2
.......................................................UCUGCAAUAGCCUGCCUa..................... len:18 al:2
.......................................................UCUGCAAUAGCCUGCCUCu.................... len:19 al:2
.......................................................UCUGCAAUAGCCUGCCUuC.................... len:19 al:1
.......................................................UCUGCAAUAGCCUGCu....................... len:16 al:2
.......................................................UCUGCAAUAGCCUGCCUC..................... len:18 al:1