Genome: /home/shared/8TB_HDD_01/sam/gitrepos/deep-dive/D-Apul/data/Amil/ncbi_dataset/data/GCF_013753865.1/GCF_013753865.1_Amil_v2.1_genomic.fa
Alignments: /home/shared/8TB_HDD_01/sam/gitrepos/deep-dive/D-Apul/output/13.1-Apul-sRNAseq-ShortStack-R1-reads/ShortStack_out/merged_alignments.bam
Location: NC_058069.1:1868134-1868229 plus
Post-script file name: /home/shared/8TB_HDD_01/sam/gitrepos/deep-dive/D-Apul/output/13.1-Apul-sRNAseq-ShortStack-R1-reads/ShortStack_out/strucVis/Cluster_3197.ps
Locus Name: Cluster_3197
AUUAUAUGAGAUGCAGUAUGAUAUUGAUGAGCACAACAAAAGGUCUAUGGGCACUUUUUGUGAUGUUCGUCAAUAUCAGAUUUCAUCCAUUAUCAU
.....(((.((((.(((.(((((((((((((((..(((((((((((...)).)))))))))..))))))))))))))).))).)))))))...... (-36.20)
...AUAUGAGAUGCAGUAUGAU.......................................................................... len:19 al:1
....UAUGAGAUGCAGUAUGgU.......................................................................... len:18 al:1
......UGAGcUGCAGUAUGAU.......................................................................... len:16 al:1
......................AUUGAUGAGCACAACAAAAGGa.................................................... len:22 al:5
......................AUUGAUGAGCACAACAAAAGGUuU.................................................. len:24 al:1
......................AUUGgUGAGCACAACAAAAGGU.................................................... len:22 al:3
......................AUUGAUGAGCACAACAAAAGGg.................................................... len:22 al:3
......................AUUGAUGAGCACAACAAAAGGc.................................................... len:22 al:27
......................AUUGAUGAGCACAACAAAAGGUC................................................... len:23 al:1
......................AUUGAUGAGCACAACAAAAGGUa................................................... len:23 al:3
......................AUUGAUGAGCACAACAAA........................................................ len:18 al:3
......................AUUGAUGAGCACAACAAAAGGU.................................................... len:22 al:140
......................AUUGAUGAGCACAACAAAA....................................................... len:19 al:2
......................AcUGAUGAGCACAACAAAAGGU.................................................... len:22 al:1
......................AUUGAgGAGCACAACAAAAGGU.................................................... len:22 al:1
......................AUUGAUGAGCACAACAAAAG...................................................... len:20 al:1
......................AUUGAUGAGCACAACAAAAGGUu................................................... len:23 al:9
......................gUUGAUGAGCACAACAAAAGGU.................................................... len:22 al:1
......................AUUGAUGAGCACAACAAAgGG..................................................... len:21 al:1
......................AUUGAUGAGCACAACAAAAGa..................................................... len:21 al:1
......................AUUGAUGAGCACAACAAAAGGUCUAUGGGu............................................ len:30 al:1
......................AUUGAUGAGCACAACAAAgGGU.................................................... len:22 al:8
......................AUUGAUGAGCACAACAAAAGG..................................................... len:21 al:5
......................AUUGAUGAGCACAACAAAAGcU.................................................... len:22 al:1
......................AUUGAUGAGCACAACAAAcGGU.................................................... len:22 al:1
.......................UUGAUGAGCACAACAAAAGc..................................................... len:20 al:1
.......................UUGAUGAGCACAACAAAAGGa.................................................... len:21 al:1
.......................UUGAUGAGCACAACAAAAGGU.................................................... len:21 al:3
.......................UUGAUGAGCACAACAAAAGGc.................................................... len:21 al:1
.......................UUGAUGAGCACAACAAA........................................................ len:17 al:2
........................UGAUGAGCACAACAAAAGGU.................................................... len:20 al:1
......................................................UUUUUGUGAUGUUCGUCAAc...................... len:20 al:7
......................................................UUUUUGUGAUGUUCG........................... len:15 al:1
......................................................UUUUUGUGgUGUUCGUCAAUAU.................... len:22 al:2
......................................................UUUUUGcGAUGUUCGUCA........................ len:18 al:1
......................................................UUUUUGUGAUGUUCGUCAAaA..................... len:21 al:1
......................................................UUUUUGaGAUGUUCGUC......................... len:17 al:1
......................................................UUUUUGUGAUGUUCGUCgAU...................... len:20 al:1
......................................................UUUUUGUGAUGUUCGUCgAUAU.................... len:22 al:1
......................................................UUUUUGUGAUGUUCGUa......................... len:17 al:2
......................................................UUUUUGUGAUGUUCGUCAAU...................... len:20 al:23
......................................................UUUUUGUGAUGUUCGUCuAUA..................... len:21 al:1
......................................................UUUUUGUGAUGUUCGcC......................... len:17 al:4
......................................................UcUUUGUGAUGUUCGUCA........................ len:18 al:2
......................................................UUUUUGUGAUGUUCGUCAAa...................... len:20 al:1
......................................................UUUcUGUGAUGUUCGUCAAUAU.................... len:22 al:1
......................................................UUUUUGUGAUGUUCGUCAAcA..................... len:21 al:1
......................................................UUUUUGUGAUGUUCGUCA........................ len:18 al:4
......................................................UUUUUGUGAUGUUCGUCAAUAUu................... len:23 al:20
......................................................UUUUUGUGAUGUUCGUCAAUAc.................... len:22 al:3
......................................................UUUUUGUGgUGUUCGUCAAUA..................... len:21 al:1
......................................................UUUUUGUGAUGgUCGUCAAUAU.................... len:22 al:1
......................................................UUUUUGUGAUGUUCGUCAAUA..................... len:21 al:38
......................................................UUUUUGUGAUGUUCGUu......................... len:17 al:10
......................................................UUUUUGUGAUGUUCGUCAAUAUC................... len:23 al:6
......................................................UUUUUGUGAUGUUCGU.......................... len:16 al:22
......................................................UUUUUGUGAUGUUCGUCAAUAU.................... len:22 al:41
......................................................UUUUUGUGAUGUUCGUCAAUAa.................... len:22 al:2
......................................................UUUUUGUGAUGUUCGUC......................... len:17 al:46
......................................................UUUUUGUGAUGUUCGUCAAUAUa................... len:23 al:3
.......................................................UUUUGUGAUGUUCGUC......................... len:16 al:1
.......................................................UUUUGUGAUGUUCGU.......................... len:15 al:1
.......................................................UUUUGUGAUGUUCGUCAAU...................... len:19 al:1