Genome: /home/shared/8TB_HDD_01/sam/gitrepos/deep-dive/D-Apul/data/Amil/ncbi_dataset/data/GCF_013753865.1/GCF_013753865.1_Amil_v2.1_genomic.fa
Alignments: /home/shared/8TB_HDD_01/sam/gitrepos/deep-dive/D-Apul/output/13.1-Apul-sRNAseq-ShortStack-R1-reads/ShortStack_out/merged_alignments.bam
Location: NC_058078.1:13646542-13646635 plus
Post-script file name: /home/shared/8TB_HDD_01/sam/gitrepos/deep-dive/D-Apul/output/13.1-Apul-sRNAseq-ShortStack-R1-reads/ShortStack_out/strucVis/Cluster_10788.ps
Locus Name: Cluster_10788
UGAUGUAUCGUGGAAGAUCCCAUUCGUCUCUUGUAUUUUCCUGGUAUAUACCACGAAAAUACAAGUGACUGGUGGGAUAUUCUUUGGUUUACCA
......((((.((((.((((((((.(((.(((((((((((.((((....)))).))))))))))).))).)))))))).)))).))))...... (-39.70)
..AUGUAUCGUGGAAGAUCCC......................................................................... len:19 al:1
.....................AUUCGUCUCUUGUAUUUUCCUGG.................................................. len:23 al:13
.....................gUUCGUCUCUUGUAUUUUCCUGG.................................................. len:23 al:1
.....................AUUuGUCUCUUGUAUUUUCCUGG.................................................. len:23 al:7
.....................AUUCGUCUCUUGUAUUUUCCUGa.................................................. len:23 al:1
.....................AUUCGUCUCUUGUAUUUUCCcGG.................................................. len:23 al:1
.....................AUcCGUCUCUUGUAUUUUCCUGG.................................................. len:23 al:1
......................UUCGUCUCUUGUAUUUUCCUGG.................................................. len:22 al:248
......................UUCGUCUCUUuUAUUUUCCUGGU................................................. len:23 al:1
......................UUCGUCUCUUGUAUUUUCCUGa.................................................. len:22 al:80
......................UUCGUCUCUUGUAUUUUCCUGGUu................................................ len:24 al:4
......................UUCGUCUCUUGUAUUUUCCa.................................................... len:20 al:5
......................UUCGUCUCUUGUAUUUUCCUGGUA................................................ len:24 al:2
......................UUCGUCUCUUGUAUUUUCCUGGU................................................. len:23 al:25
......................UUCGUCUCUUGUAUUUUCCcGG.................................................. len:22 al:2
......................UUCGUCUCUUGUAUUUUCCUuG.................................................. len:22 al:1
......................UUCGUCUCUaGUAUUUUCCUGG.................................................. len:22 al:1
......................UUCGUCUCUUGUAUUUUCCUaG.................................................. len:22 al:1
......................UUCGUCUCUcGUAUUUUCCUGG.................................................. len:22 al:1
......................UUCGUCUCUUGUAUUUUCC..................................................... len:19 al:1
......................UUCGUCUCUUGUAUUUUCCUGGUAgA.............................................. len:26 al:1
......................UUCGUCUCUUuUAUUUUCCUGG.................................................. len:22 al:1
......................UUuGUCUCUUGUAUUUUCCUGG.................................................. len:22 al:43
......................UUCGUCUCUUGUAUUUUCCUGc.................................................. len:22 al:5
......................UUCGUCUCUUGUAUUUUCCU.................................................... len:20 al:15
......................UUCGUCUCUUGUAUUUUCCUGGc................................................. len:23 al:4
......................UUCGcCUCUUGUAUUUUCCUGG.................................................. len:22 al:1
......................UUCGUCUCUUGUAUUUUCCUG................................................... len:21 al:3
......................UUuGUCUCUUGUAUUUUCCU.................................................... len:20 al:2
......................UUCGUCUCUUGUAcUUUCCUGG.................................................. len:22 al:1
......................cUCGUCUCUUGUAUUUUCCUGG.................................................. len:22 al:1
......................UUuGUCUCUUGUAUUUUCCUGGUA................................................ len:24 al:1
......................UUCGUCUCUUGUAUUUUCCg.................................................... len:20 al:3
......................UUCGUaUCUUGUAUUUUCCUGGU................................................. len:23 al:1
......................UUuGUCUCUUGUAUUUUCCUGGU................................................. len:23 al:55
......................UUCGUCUCUUGUAUUUUCCUGu.................................................. len:22 al:14
......................aUCGUCUCUUGUAUUUUCCUGG.................................................. len:22 al:1
......................UUCGUCUCUUGUAUUUUCCUa................................................... len:21 al:1
......................UUCGUCUCUUGUAUUUUCCc.................................................... len:20 al:4
......................UUCGUCUCUUGUAUUcUCCUGG.................................................. len:22 al:3
......................UUCGUCUCUUGUAUUUUCCUGGa................................................. len:23 al:1
......................UUCGUCUCcUGUAUUUUCCUGG.................................................. len:22 al:3
......................UUCGUCcCUUGUAUUUUCCUGG.................................................. len:22 al:2
......................UUCGUCUCUUGUgUUUUCCUGG.................................................. len:22 al:2
.......................UCGUCUCUUGUAUUUUCCUGGa................................................. len:22 al:3
.......................UuGUCUCUUGUAUUUUCCUGG.................................................. len:21 al:1
.......................UCGUCUCUUGUAUUUUCCUGGU................................................. len:22 al:17
.......................UCGUCUCUUGUAUUUUCCUGa.................................................. len:21 al:3
.......................UCGUCUCUUGUAUUUUCCUGaU................................................. len:22 al:1
.......................UCGUCUCUUGUAUUUUCCUGGc................................................. len:22 al:4
.......................UuGUCUCUUGUAUUUUCCUGGU................................................. len:22 al:1
.......................UuGUCUCUUGUAUUUUCCUGGUAU............................................... len:24 al:1
.......................UCGUCUCUUGUAUUUUCCUGGUAUu.............................................. len:25 al:1
.......................UCGUCUCUUGUAUUUUCCUGG.................................................. len:21 al:10
........................CGUCUCUUGUAUUUUCCUGGU................................................. len:21 al:8
........................CGUCUCUUGUAUUUUCCUGa.................................................. len:20 al:8
........................uGUCUCUUGUAUUUUCCU.................................................... len:18 al:2
........................uGUCUCUUGUAUUUUCCUGGU................................................. len:21 al:27
........................CGUCUCUUGUAUUUUCCUGGUc................................................ len:22 al:1
........................CGUCUCUUGUAUUUUCCUGc.................................................. len:20 al:1
........................CGUCUCUUGUAUUUUCCUcG.................................................. len:20 al:1
........................CGUCUCUUGUAUUUUCCUGGUu................................................ len:22 al:1
........................CGUCUCUUGUAUUUUCCUGcU................................................. len:21 al:1
........................CGUCUCUUGUAUUUUCCUGG.................................................. len:20 al:10
........................uGUCUCUUGUAUUUUCCUGG.................................................. len:20 al:10
........................CuUCUCUUGUAUUUUCCUGG.................................................. len:20 al:1
...................................................CACGAAAAUACAAGUGACUGGU..................... len:22 al:7
...................................................CACGAAAAUACAAGUGACUGGUG.................... len:23 al:1
...................................................CAaGAAAAUACAAGUGACUGG...................... len:21 al:1
...................................................CACGAAAAUACAAGUGACUGGc..................... len:22 al:3
...................................................CACGAAAAUACAAGUGACUGcU..................... len:22 al:1
...................................................CAaGAAAAUACAAGUGACUGGU..................... len:22 al:4
....................................................ACGAAAAUACAAGUGACUGGUGc................... len:23 al:6
....................................................ACGAAAAUACAAGUGACUGGUG.................... len:22 al:56
....................................................ACGAAAAUACAAGUGACUGGUu.................... len:22 al:6
....................................................AaGAAAAUACAAGUGACUGGUGG................... len:23 al:2
....................................................ACGAAAAUACAAGUGACUGGUc.................... len:22 al:4
....................................................AaGAAAAUACAAGUGACUGGUG.................... len:22 al:24
....................................................ACGAAAAUACAAGUGACUGGUGu................... len:23 al:41
....................................................AgGAAAAUACAAGUGACUGGUGG................... len:23 al:1
....................................................ACGAAAAUACAAGUGACUGGUa.................... len:22 al:18
....................................................ACGAAAAUACAAGUGACUGGUGG................... len:23 al:12
....................................................gCGAAAAUACAAGUGACUGGUG.................... len:22 al:3
....................................................AaGAAAAUACAAGUGACUGGU..................... len:21 al:5
....................................................ACGAAAAUACAAGUGACUGGaG.................... len:22 al:1
....................................................ACGAAgAUACAAGUGACUGGU..................... len:21 al:1
....................................................ACGAAAAUACAAGUGACUGGUGGu.................. len:24 al:8
....................................................ACGAAAAUACAAGUGACUGGcG.................... len:22 al:1
....................................................AgGAAAAUACAAGUGACUGGU..................... len:21 al:1
....................................................ACGAAAAUACAAGUGACUGGc..................... len:21 al:8
....................................................ACGAAAAUACAAGUGACUGGUGGa.................. len:24 al:1
....................................................ACGAAAAUACAAGUGACUGG...................... len:20 al:4
....................................................ACGAAAAUACAAGUGACUGGUGa................... len:23 al:9
....................................................ACGAAAAUACgAGUGACUGGU..................... len:21 al:1
....................................................ACGAAAAUACAAGUGACUGa...................... len:20 al:1
....................................................ACGAAAAUACcAGUGACUGGUG.................... len:22 al:2
....................................................ACGAAAAUACAAGUGACUGGa..................... len:21 al:2
....................................................ACGAAAAUACAAGUGACaGGUGG................... len:23 al:2
....................................................ACGAAAAUACAAGUGACUGGU..................... len:21 al:39