current dir:	/home/shared/8TB_HDD_01/sam/gitrepos/deep-dive/D-Apul/code
mapper command:	/home/shared/mirdeep2/bin/mapper.pl /home/shared/8TB_HDD_01/sam/gitrepos/deep-dive/D-Apul/output/11.1-Apul-sRNAseq-miRdeep2-31bp-fastp-merged/collapsed_reads_gt17bp_mirdeep2.fasta -c -p /home/shared/8TB_HDD_01/sam/gitrepos/deep-dive/D-Apul/data/Amil/ncbi_dataset/data/GCF_013753865.1/GCF_013753865.1_Amil_v2.1_genomic-no_spaces -t /home/shared/8TB_HDD_01/sam/gitrepos/deep-dive/D-Apul/output/11.1-Apul-sRNAseq-miRdeep2-31bp-fastp-merged/Apul-mirdeep2-mapping.arf -o 40