[2024-02-14 14:48:04,209] multiqc                                            [DEBUG  ]  This is MultiQC v1.20
[2024-02-14 14:48:04,210] multiqc                                            [DEBUG  ]  Command used: /home/sam/programs/miniconda3/bin/multiqc /home/sam/gitrepos/deep-dive/D-Apul/output/08.1-Dapul-sRNAseq-trimming-R1-only/trimmed-fastqc -o /home/sam/gitrepos/deep-dive/D-Apul/output/08.1-Dapul-sRNAseq-trimming-R1-only/trimmed-fastqc
[2024-02-14 14:48:04,701] multiqc                                            [DEBUG  ]  Latest MultiQC version is v1.20
[2024-02-14 14:48:04,702] multiqc                                            [DEBUG  ]  Working dir : /home/sam/gitrepos/deep-dive/D-Apul/code
[2024-02-14 14:48:04,702] multiqc                                            [DEBUG  ]  Template    : default
[2024-02-14 14:48:04,703] multiqc                                            [DEBUG  ]  Running Python 3.9.1 (default, Dec 11 2020, 14:32:07)  [GCC 7.3.0]
[2024-02-14 14:48:04,704] multiqc                                            [DEBUG  ]  Analysing modules: custom_content, ccs, ngsderive, purple, conpair, lima, peddy, somalier, methylqa, mosdepth, phantompeakqualtools, qualimap, bamdst, preseq, hifiasm, quast, qorts, rna_seqc, rockhopper, rsem, rseqc, busco, bustools, goleft_indexcov, gffcompare, disambiguate, supernova, deeptools, sargasso, verifybamid, mirtrace, happy, mirtop, sambamba, gopeaks, homer, hops, macs2, theta2, snpeff, gatk, htseq, bcftools, featureCounts, fgbio, dragen, dragen_fastqc, dedup, pbmarkdup, damageprofiler, mapdamage, biobambam2, jcvi, mtnucratio, picard, vep, bakta, prokka, qc3C, nanostat, samblaster, samtools, sexdeterrmine, seqera_cli, eigenstratdatabasetools, bamtools, jellyfish, vcftools, longranger, stacks, varscan2, snippy, umitools, truvari, megahit, bbmap, bismark, biscuit, diamond, hicexplorer, hicup, hicpro, salmon, kallisto, slamdunk, star, hisat2, tophat, bowtie2, bowtie1, cellranger, snpsplit, odgi, pangolin, nextclade, freyja, humid, kat, leehom, librarian, nonpareil, adapterRemoval, bbduk, clipandmerge, cutadapt, flexbar, sourmash, kaiju, bracken, kraken, malt, motus, trimmomatic, sickle, skewer, sortmerna, biobloomtools, fastq_screen, afterqc, fastp, fastqc, filtlong, prinseqplusplus, pychopper, porechop, pycoqc, minionqc, anglerfish, multivcfanalyzer, clusterflow, checkqc, bcl2fastq, bclconvert, interop, ivar, flash, seqyclean, optitype, whatshap, xenome, xengsort, metaphlan, seqwho
[2024-02-14 14:48:04,705] multiqc                                            [DEBUG  ]  Using temporary directory for creating report: /tmp/tmpe7z_62ru
[2024-02-14 14:48:04,707] multiqc                                            [INFO   ]  Search path : /home/sam/gitrepos/deep-dive/D-Apul/output/08.1-Dapul-sRNAseq-trimming-R1-only/trimmed-fastqc
[2024-02-14 14:48:04,796] multiqc                                            [DEBUG  ]  Summary of files that were skipped by the search: [skipped_module_specific_max_filesize: 65] // [skipped_no_match: 5]
[2024-02-14 14:48:04,810] multiqc                                            [DEBUG  ]  No samples found: custom_content
[2024-02-14 14:48:05,114] multiqc.modules.fastqc.fastqc                      [INFO   ]  Found 5 reports
[2024-02-14 14:48:05,114] multiqc.utils.util_functions                       [DEBUG  ]  Wrote data file multiqc_fastqc.txt
[2024-02-14 14:48:06,421] multiqc.plots.plotly.heatmap                       [DEBUG  ]  Resizing width from 385 to 900 to fit horizontal column text on the screen
[2024-02-14 14:48:06,421] multiqc.plots.plotly.heatmap                       [DEBUG  ]  Heatmap size: 900x200, px per element: 81.82x40.00
[2024-02-14 14:48:06,425] multiqc.utils.software_versions                    [DEBUG  ]  Reading software versions from config.software_versions
[2024-02-14 14:48:06,425] multiqc.utils.util_functions                       [DEBUG  ]  Wrote data file multiqc_software_versions.txt
[2024-02-14 14:48:06,438] multiqc.utils.util_functions                       [DEBUG  ]  Wrote data file multiqc_general_stats.txt
[2024-02-14 14:48:06,438] multiqc                                            [DEBUG  ]  Compressing plot data
[2024-02-14 14:48:06,537] multiqc.utils.util_functions                       [DEBUG  ]  Wrote data file multiqc_data.json
[2024-02-14 14:48:06,537] multiqc                                            [INFO   ]  Report      : ../output/08.1-Dapul-sRNAseq-trimming-R1-only/trimmed-fastqc/multiqc_report.html
[2024-02-14 14:48:06,537] multiqc                                            [INFO   ]  Data        : ../output/08.1-Dapul-sRNAseq-trimming-R1-only/trimmed-fastqc/multiqc_data
[2024-02-14 14:48:06,537] multiqc                                            [DEBUG  ]  Moving data file from '/tmp/tmpe7z_62ru/multiqc_data' to '/home/sam/gitrepos/deep-dive/D-Apul/output/08.1-Dapul-sRNAseq-trimming-R1-only/trimmed-fastqc/multiqc_data'
[2024-02-14 14:48:06,538] multiqc                                            [DEBUG  ]  Full report path: /home/sam/gitrepos/deep-dive/D-Apul/output/08.1-Dapul-sRNAseq-trimming-R1-only/trimmed-fastqc/multiqc_report.html
[2024-02-14 14:48:06,640] multiqc                                            [INFO   ]  MultiQC complete