Running DIAMOND BLASTx on .

diamond v2.1.1.155 (C) Max Planck Society for the Advancement of Science
Documentation, support and updates available at http://www.diamondsearch.org
Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021)

#CPU threads: 40
Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1)
Temporary directory: 
Percentage range of top alignment score to report hits: 5
Opening the database...  [0.338s]
Database: /gscratch/srlab/blastdbs/20230215-ncbi-nr/20230215-ncbi-nr.dmnd (type: Diamond database, sequences: 526308523, letters: 207134680681)
Block size = 15000000000
Opening the input file...  [0.536s]
Opening the output file...  [0.039s]
Loading query sequences...  [1.155s]
Masking queries...  [0.591s]
Algorithm: Double-indexed
Building query histograms...  [0.318s]
Loading reference sequences...  [339.159s]
Masking reference...  [30.868s]
Initializing dictionary...  [0.128s]
Initializing temporary storage...  [0.016s]
Building reference histograms...  [32.726s]
Allocating buffers...  [0.001s]
Processing query block 1, reference block 1/14, shape 1/2, index chunk 1/4.
Building reference seed array...  [10.431s]
Building query seed array...  [0.192s]
Computing hash join...  [3.779s]
Masking low complexity seeds...  [0.058s]
Searching alignments...  [1.936s]
Deallocating memory...  [0s]
Processing query block 1, reference block 1/14, shape 1/2, index chunk 2/4.
Building reference seed array...  [12.117s]
Building query seed array...  [0.21s]
Computing hash join...  [3.751s]
Masking low complexity seeds...  [0.059s]
Searching alignments...  [1.882s]
Deallocating memory...  [0s]
Processing query block 1, reference block 1/14, shape 1/2, index chunk 3/4.
Building reference seed array...  [13.448s]
Building query seed array...  [0.23s]
Computing hash join...  [3.762s]
Masking low complexity seeds...  [0.065s]
Searching alignments...  [1.808s]
Deallocating memory...  [0s]
Processing query block 1, reference block 1/14, shape 1/2, index chunk 4/4.
Building reference seed array...  [9.943s]
Building query seed array...  [0.191s]
Computing hash join...  [3.717s]
Masking low complexity seeds...  [0.058s]
Searching alignments...  [1.806s]
Deallocating memory...  [0s]
Processing query block 1, reference block 1/14, shape 2/2, index chunk 1/4.
Building reference seed array...  [9.74s]
Building query seed array...  [0.192s]
Computing hash join...  [3.733s]
Masking low complexity seeds...  [0.062s]
Searching alignments...  [1.812s]
Deallocating memory...  [0s]
Processing query block 1, reference block 1/14, shape 2/2, index chunk 2/4.
Building reference seed array...  [12.491s]
Building query seed array...  [0.217s]
Computing hash join...  [3.682s]
Masking low complexity seeds...  [0.065s]
Searching alignments...  [1.871s]
Deallocating memory...  [0s]
Processing query block 1, reference block 1/14, shape 2/2, index chunk 3/4.
Building reference seed array...  [12.649s]
Building query seed array...  [0.2s]
Computing hash join...  [3.693s]
Masking low complexity seeds...  [0.062s]
Searching alignments...  [1.803s]
Deallocating memory...  [0s]
Processing query block 1, reference block 1/14, shape 2/2, index chunk 4/4.
Building reference seed array...  [9.55s]
Building query seed array...  [0.203s]
Computing hash join...  [3.622s]
Masking low complexity seeds...  [0.059s]
Searching alignments...  [1.791s]
Deallocating memory...  [0s]
Deallocating buffers...  [0.11s]
Clearing query masking...  [0.04s]
Opening temporary output file...  [0s]
Computing alignments... Loading trace points...  [4.341s]
Sorting trace points...  [0.436s]
Computing alignments...  [32.562s]
Deallocating buffers...  [0.016s]
Loading trace points...  [0s]
 [38.214s]
Deallocating reference...  [0.097s]
Loading reference sequences...  [33.664s]
Masking reference...  [32.056s]
Initializing dictionary...  [0.078s]
Initializing temporary storage...  [0.008s]
Building reference histograms...  [32.86s]
Allocating buffers...  [0.002s]
Processing query block 1, reference block 2/14, shape 1/2, index chunk 1/4.
Building reference seed array...  [10.178s]
Building query seed array...  [0.199s]
Computing hash join...  [3.771s]
Masking low complexity seeds...  [0.059s]
Searching alignments...  [1.905s]
Deallocating memory...  [0s]
Processing query block 1, reference block 2/14, shape 1/2, index chunk 2/4.
Building reference seed array...  [12.349s]
Building query seed array...  [0.228s]
Computing hash join...  [3.689s]
Masking low complexity seeds...  [0.057s]
Searching alignments...  [1.817s]
Deallocating memory...  [0s]
Processing query block 1, reference block 2/14, shape 1/2, index chunk 3/4.
Building reference seed array...  [12.949s]
Building query seed array...  [0.245s]
Computing hash join...  [3.828s]
Masking low complexity seeds...  [0.059s]
Searching alignments...  [1.923s]
Deallocating memory...  [0s]
Processing query block 1, reference block 2/14, shape 1/2, index chunk 4/4.
Building reference seed array...  [9.85s]
Building query seed array...  [0.187s]
Computing hash join...  [3.753s]
Masking low complexity seeds...  [0.059s]
Searching alignments...  [1.788s]
Deallocating memory...  [0s]
Processing query block 1, reference block 2/14, shape 2/2, index chunk 1/4.
Building reference seed array...  [9.805s]
Building query seed array...  [0.19s]
Computing hash join...  [3.686s]
Masking low complexity seeds...  [0.059s]
Searching alignments...  [1.868s]
Deallocating memory...  [0s]
Processing query block 1, reference block 2/14, shape 2/2, index chunk 2/4.
Building reference seed array...  [11.874s]
Building query seed array...  [0.206s]
Computing hash join...  [3.662s]
Masking low complexity seeds...  [0.063s]
Searching alignments...  [1.81s]
Deallocating memory...  [0s]
Processing query block 1, reference block 2/14, shape 2/2, index chunk 3/4.
Building reference seed array...  [12.956s]
Building query seed array...  [0.226s]
Computing hash join...  [3.705s]
Masking low complexity seeds...  [0.059s]
Searching alignments...  [1.793s]
Deallocating memory...  [0s]
Processing query block 1, reference block 2/14, shape 2/2, index chunk 4/4.
Building reference seed array...  [9.863s]
Building query seed array...  [0.193s]
Computing hash join...  [3.601s]
Masking low complexity seeds...  [0.062s]
Searching alignments...  [1.772s]
Deallocating memory...  [0s]
Deallocating buffers...  [0.087s]
Clearing query masking...  [0.037s]
Opening temporary output file...  [0.001s]
Computing alignments... Loading trace points...  [2.846s]
Sorting trace points...  [0.439s]
Computing alignments...  [47.594s]
Deallocating buffers...  [0.009s]
Loading trace points...  [0s]
 [51.923s]
Deallocating reference...  [0.101s]
Loading reference sequences...  [41.366s]
Masking reference...  [32.138s]
Initializing dictionary...  [0.077s]
Initializing temporary storage...  [0.014s]
Building reference histograms...  [32.214s]
Allocating buffers...  [0.003s]
Processing query block 1, reference block 3/14, shape 1/2, index chunk 1/4.
Building reference seed array...  [10.306s]
Building query seed array...  [0.212s]
Computing hash join...  [3.773s]
Masking low complexity seeds...  [0.061s]
Searching alignments...  [1.942s]
Deallocating memory...  [0s]
Processing query block 1, reference block 3/14, shape 1/2, index chunk 2/4.
Building reference seed array...  [11.795s]
Building query seed array...  [0.234s]
Computing hash join...  [3.717s]
Masking low complexity seeds...  [0.058s]
Searching alignments...  [1.854s]
Deallocating memory...  [0s]
Processing query block 1, reference block 3/14, shape 1/2, index chunk 3/4.
Building reference seed array...  [12.872s]
Building query seed array...  [0.22s]
Computing hash join...  [3.686s]
Masking low complexity seeds...  [0.058s]
Searching alignments...  [1.779s]
Deallocating memory...  [0s]
Processing query block 1, reference block 3/14, shape 1/2, index chunk 4/4.
Building reference seed array...  [9.67s]
Building query seed array...  [0.185s]
Computing hash join...  [3.745s]
Masking low complexity seeds...  [0.058s]
Searching alignments...  [1.756s]
Deallocating memory...  [0s]
Processing query block 1, reference block 3/14, shape 2/2, index chunk 1/4.
Building reference seed array...  [10.023s]
Building query seed array...  [0.205s]
Computing hash join...  [3.666s]
Masking low complexity seeds...  [0.058s]
Searching alignments...  [1.734s]
Deallocating memory...  [0s]
Processing query block 1, reference block 3/14, shape 2/2, index chunk 2/4.
Building reference seed array...  [12.133s]
Building query seed array...  [0.219s]
Computing hash join...  [3.658s]
Masking low complexity seeds...  [0.061s]
Searching alignments...  [1.664s]
Deallocating memory...  [0s]
Processing query block 1, reference block 3/14, shape 2/2, index chunk 3/4.
Building reference seed array...  [13.203s]
Building query seed array...  [0.22s]
Computing hash join...  [3.715s]
Masking low complexity seeds...  [0.062s]
Searching alignments...  [1.698s]
Deallocating memory...  [0s]
Processing query block 1, reference block 3/14, shape 2/2, index chunk 4/4.
Building reference seed array...  [9.979s]
Building query seed array...  [0.225s]
Computing hash join...  [3.623s]
Masking low complexity seeds...  [0.06s]
Searching alignments...  [1.687s]
Deallocating memory...  [0s]
Deallocating buffers...  [0.086s]
Clearing query masking...  [0.04s]
Opening temporary output file...  [0s]
Computing alignments... Loading trace points...  [2.662s]
Sorting trace points...  [0.451s]
Computing alignments...  [30.933s]
Deallocating buffers...  [0.015s]
Loading trace points...  [0s]
 [35.322s]
Deallocating reference...  [0.088s]
Loading reference sequences...  [338.299s]
Masking reference...  [30.912s]
Initializing dictionary...  [0.077s]
Initializing temporary storage...  [0.007s]
Building reference histograms...  [32.665s]
Allocating buffers...  [0.001s]
Processing query block 1, reference block 4/14, shape 1/2, index chunk 1/4.
Building reference seed array...  [10.543s]
Building query seed array...  [0.202s]
Computing hash join...  [3.769s]
Masking low complexity seeds...  [0.058s]
Searching alignments...  [1.888s]
Deallocating memory...  [0s]
Processing query block 1, reference block 4/14, shape 1/2, index chunk 2/4.
Building reference seed array...  [12.296s]
Building query seed array...  [0.208s]
Computing hash join...  [3.709s]
Masking low complexity seeds...  [0.058s]
Searching alignments...  [1.872s]
Deallocating memory...  [0s]
Processing query block 1, reference block 4/14, shape 1/2, index chunk 3/4.
Building reference seed array...  [13.594s]
Building query seed array...  [0.247s]
Computing hash join...  [3.719s]
Masking low complexity seeds...  [0.058s]
Searching alignments...  [1.882s]
Deallocating memory...  [0s]
Processing query block 1, reference block 4/14, shape 1/2, index chunk 4/4.
Building reference seed array...  [10.197s]
Building query seed array...  [0.185s]
Computing hash join...  [3.767s]
Masking low complexity seeds...  [0.058s]
Searching alignments...  [1.881s]
Deallocating memory...  [0s]
Processing query block 1, reference block 4/14, shape 2/2, index chunk 1/4.
Building reference seed array...  [9.947s]
Building query seed array...  [0.197s]
Computing hash join...  [3.659s]
Masking low complexity seeds...  [0.058s]
Searching alignments...  [1.823s]
Deallocating memory...  [0s]
Processing query block 1, reference block 4/14, shape 2/2, index chunk 2/4.
Building reference seed array...  [12.154s]
Building query seed array...  [0.219s]
Computing hash join...  [3.571s]
Masking low complexity seeds...  [0.059s]
Searching alignments...  [1.773s]
Deallocating memory...  [0s]
Processing query block 1, reference block 4/14, shape 2/2, index chunk 3/4.
Building reference seed array...  [12.985s]
Building query seed array...  [0.22s]
Computing hash join...  [3.724s]
Masking low complexity seeds...  [0.07s]
Searching alignments...  [1.81s]
Deallocating memory...  [0s]
Processing query block 1, reference block 4/14, shape 2/2, index chunk 4/4.
Building reference seed array...  [9.947s]
Building query seed array...  [0.193s]
Computing hash join...  [3.666s]
Masking low complexity seeds...  [0.062s]
Searching alignments...  [1.804s]
Deallocating memory...  [0s]
Deallocating buffers...  [0.092s]
Clearing query masking...  [0.037s]
Opening temporary output file...  [0.001s]
Computing alignments... Loading trace points...  [4.302s]
Sorting trace points...  [0.424s]
Computing alignments...  [30.291s]
Deallocating buffers...  [0.012s]
Loading trace points...  [0s]
 [36.129s]
Deallocating reference...  [0.084s]
Loading reference sequences...  [365.83s]
Masking reference...  [31.041s]
Initializing dictionary...  [0.077s]
Initializing temporary storage...  [0.008s]
Building reference histograms...  [32.517s]
Allocating buffers...  [0.001s]
Processing query block 1, reference block 5/14, shape 1/2, index chunk 1/4.
Building reference seed array...  [10.514s]
Building query seed array...  [0.204s]
Computing hash join...  [3.845s]
Masking low complexity seeds...  [0.062s]
Searching alignments...  [1.902s]
Deallocating memory...  [0s]
Processing query block 1, reference block 5/14, shape 1/2, index chunk 2/4.
Building reference seed array...  [12.224s]
Building query seed array...  [0.205s]
Computing hash join...  [3.813s]
Masking low complexity seeds...  [0.061s]
Searching alignments...  [1.828s]
Deallocating memory...  [0s]
Processing query block 1, reference block 5/14, shape 1/2, index chunk 3/4.
Building reference seed array...  [13.261s]
Building query seed array...  [0.21s]
Computing hash join...  [3.787s]
Masking low complexity seeds...  [0.061s]
Searching alignments...  [1.826s]
Deallocating memory...  [0s]
Processing query block 1, reference block 5/14, shape 1/2, index chunk 4/4.
Building reference seed array...  [10.039s]
Building query seed array...  [0.206s]
Computing hash join...  [3.722s]
Masking low complexity seeds...  [0.058s]
Searching alignments...  [1.806s]
Deallocating memory...  [0s]
Processing query block 1, reference block 5/14, shape 2/2, index chunk 1/4.
Building reference seed array...  [9.964s]
Building query seed array...  [0.19s]
Computing hash join...  [3.732s]
Masking low complexity seeds...  [0.06s]
Searching alignments...  [1.775s]
Deallocating memory...  [0s]
Processing query block 1, reference block 5/14, shape 2/2, index chunk 2/4.
Building reference seed array...  [11.853s]
Building query seed array...  [0.223s]
Computing hash join...  [3.643s]
Masking low complexity seeds...  [0.061s]
Searching alignments...  [1.734s]
Deallocating memory...  [0s]
Processing query block 1, reference block 5/14, shape 2/2, index chunk 3/4.
Building reference seed array...  [12.797s]
Building query seed array...  [0.218s]
Computing hash join...  [3.703s]
Masking low complexity seeds...  [0.137s]
Searching alignments...  [1.789s]
Deallocating memory...  [0s]
Processing query block 1, reference block 5/14, shape 2/2, index chunk 4/4.
Building reference seed array...  [10.104s]
Building query seed array...  [0.401s]
Computing hash join...  [3.684s]
Masking low complexity seeds...  [0.061s]
Searching alignments...  [1.753s]
Deallocating memory...  [0s]
Deallocating buffers...  [0.088s]
Clearing query masking...  [0.042s]
Opening temporary output file...  [0.001s]
Computing alignments... Loading trace points...  [6.173s]
Sorting trace points...  [0.403s]
Computing alignments...  [31.478s]
Deallocating buffers...  [0.011s]
Loading trace points...  [0s]
 [39.807s]
Deallocating reference...  [0.085s]
Loading reference sequences...  [419.581s]
Masking reference...  [31.221s]
Initializing dictionary...  [0.077s]
Initializing temporary storage...  [0.008s]
Building reference histograms...  [33.012s]
Allocating buffers...  [0s]
Processing query block 1, reference block 6/14, shape 1/2, index chunk 1/4.
Building reference seed array...  [10.519s]
Building query seed array...  [0.203s]
Computing hash join...  [3.866s]
Masking low complexity seeds...  [0.059s]
Searching alignments...  [1.936s]
Deallocating memory...  [0s]
Processing query block 1, reference block 6/14, shape 1/2, index chunk 2/4.
Building reference seed array...  [12.099s]
Building query seed array...  [0.223s]
Computing hash join...  [3.743s]
Masking low complexity seeds...  [0.056s]
Searching alignments...  [1.887s]
Deallocating memory...  [0s]
Processing query block 1, reference block 6/14, shape 1/2, index chunk 3/4.
Building reference seed array...  [13.245s]
Building query seed array...  [0.227s]
Computing hash join...  [3.828s]
Masking low complexity seeds...  [0.059s]
Searching alignments...  [1.887s]
Deallocating memory...  [0s]
Processing query block 1, reference block 6/14, shape 1/2, index chunk 4/4.
Building reference seed array...  [9.953s]
Building query seed array...  [0.195s]
Computing hash join...  [3.765s]
Masking low complexity seeds...  [0.059s]
Searching alignments...  [1.814s]
Deallocating memory...  [0s]
Processing query block 1, reference block 6/14, shape 2/2, index chunk 1/4.
Building reference seed array...  [10.065s]
Building query seed array...  [0.195s]
Computing hash join...  [3.723s]
Masking low complexity seeds...  [0.064s]
Searching alignments...  [1.795s]
Deallocating memory...  [0s]
Processing query block 1, reference block 6/14, shape 2/2, index chunk 2/4.
Building reference seed array...  [12.401s]
Building query seed array...  [0.216s]
Computing hash join...  [3.661s]
Masking low complexity seeds...  [0.059s]
Searching alignments...  [1.828s]
Deallocating memory...  [0s]
Processing query block 1, reference block 6/14, shape 2/2, index chunk 3/4.
Building reference seed array...  [13.03s]
Building query seed array...  [0.234s]
Computing hash join...  [3.648s]
Masking low complexity seeds...  [0.061s]
Searching alignments...  [1.773s]
Deallocating memory...  [0s]
Processing query block 1, reference block 6/14, shape 2/2, index chunk 4/4.
Building reference seed array...  [9.822s]
Building query seed array...  [0.201s]
Computing hash join...  [3.753s]
Masking low complexity seeds...  [0.065s]
Searching alignments...  [1.804s]
Deallocating memory...  [0s]
Deallocating buffers...  [0.087s]
Clearing query masking...  [0.037s]
Opening temporary output file...  [0.001s]
Computing alignments... Loading trace points...  [11.488s]
Sorting trace points...  [0.416s]
Computing alignments...  [29.961s]
Deallocating buffers...  [0.013s]
Loading trace points...  [0s]
 [43.599s]
Deallocating reference...  [0.085s]
Loading reference sequences...  [36.05s]
Masking reference...  [32.125s]
Initializing dictionary...  [0.077s]
Initializing temporary storage...  [0.007s]
Building reference histograms...  [32.274s]
Allocating buffers...  [0s]
Processing query block 1, reference block 7/14, shape 1/2, index chunk 1/4.
Building reference seed array...  [10.181s]
Building query seed array...  [0.197s]
Computing hash join...  [3.862s]
Masking low complexity seeds...  [0.062s]
Searching alignments...  [1.923s]
Deallocating memory...  [0s]
Processing query block 1, reference block 7/14, shape 1/2, index chunk 2/4.
Building reference seed array...  [12.589s]
Building query seed array...  [0.219s]
Computing hash join...  [3.788s]
Masking low complexity seeds...  [0.065s]
Searching alignments...  [1.866s]
Deallocating memory...  [0s]
Processing query block 1, reference block 7/14, shape 1/2, index chunk 3/4.
Building reference seed array...  [13.357s]
Building query seed array...  [0.234s]
Computing hash join...  [3.748s]
Masking low complexity seeds...  [0.06s]
Searching alignments...  [1.811s]
Deallocating memory...  [0s]
Processing query block 1, reference block 7/14, shape 1/2, index chunk 4/4.
Building reference seed array...  [10.003s]
Building query seed array...  [0.2s]
Computing hash join...  [3.834s]
Masking low complexity seeds...  [0.064s]
Searching alignments...  [1.808s]
Deallocating memory...  [0s]
Processing query block 1, reference block 7/14, shape 2/2, index chunk 1/4.
Building reference seed array...  [9.697s]
Building query seed array...  [0.21s]
Computing hash join...  [3.668s]
Masking low complexity seeds...  [0.06s]
Searching alignments...  [1.867s]
Deallocating memory...  [0s]
Processing query block 1, reference block 7/14, shape 2/2, index chunk 2/4.
Building reference seed array...  [12.11s]
Building query seed array...  [0.213s]
Computing hash join...  [3.647s]
Masking low complexity seeds...  [0.057s]
Searching alignments...  [1.777s]
Deallocating memory...  [0s]
Processing query block 1, reference block 7/14, shape 2/2, index chunk 3/4.
Building reference seed array...  [13.608s]
Building query seed array...  [0.228s]
Computing hash join...  [3.751s]
Masking low complexity seeds...  [0.061s]
Searching alignments...  [1.806s]
Deallocating memory...  [0s]
Processing query block 1, reference block 7/14, shape 2/2, index chunk 4/4.
Building reference seed array...  [9.813s]
Building query seed array...  [0.197s]
Computing hash join...  [3.637s]
Masking low complexity seeds...  [0.058s]
Searching alignments...  [1.826s]
Deallocating memory...  [0s]
Deallocating buffers...  [0.084s]
Clearing query masking...  [0.039s]
Opening temporary output file...  [0s]
Computing alignments... Loading trace points...  [3.948s]
Sorting trace points...  [0.428s]
Computing alignments...  [30.634s]
Deallocating buffers...  [0.013s]
Loading trace points...  [0s]
 [36.139s]
Deallocating reference...  [0.081s]
Loading reference sequences...  [30.799s]
Masking reference...  [30.863s]
Initializing dictionary...  [0.077s]
Initializing temporary storage...  [0.008s]
Building reference histograms...  [32.999s]
Allocating buffers...  [0s]
Processing query block 1, reference block 8/14, shape 1/2, index chunk 1/4.
Building reference seed array...  [10.251s]
Building query seed array...  [0.195s]
Computing hash join...  [3.822s]
Masking low complexity seeds...  [0.061s]
Searching alignments...  [1.922s]
Deallocating memory...  [0s]
Processing query block 1, reference block 8/14, shape 1/2, index chunk 2/4.
Building reference seed array...  [12.051s]
Building query seed array...  [0.209s]
Computing hash join...  [3.736s]
Masking low complexity seeds...  [0.069s]
Searching alignments...  [1.963s]
Deallocating memory...  [0s]
Processing query block 1, reference block 8/14, shape 1/2, index chunk 3/4.
Building reference seed array...  [12.911s]
Building query seed array...  [0.219s]
Computing hash join...  [3.776s]
Masking low complexity seeds...  [0.061s]
Searching alignments...  [1.887s]
Deallocating memory...  [0s]
Processing query block 1, reference block 8/14, shape 1/2, index chunk 4/4.
Building reference seed array...  [10.085s]
Building query seed array...  [0.195s]
Computing hash join...  [3.793s]
Masking low complexity seeds...  [0.06s]
Searching alignments...  [1.837s]
Deallocating memory...  [0s]
Processing query block 1, reference block 8/14, shape 2/2, index chunk 1/4.
Building reference seed array...  [9.838s]
Building query seed array...  [0.204s]
Computing hash join...  [3.664s]
Masking low complexity seeds...  [0.06s]
Searching alignments...  [1.838s]
Deallocating memory...  [0s]
Processing query block 1, reference block 8/14, shape 2/2, index chunk 2/4.
Building reference seed array...  [12.223s]
Building query seed array...  [0.214s]
Computing hash join...  [3.604s]
Masking low complexity seeds...  [0.057s]
Searching alignments...  [1.774s]
Deallocating memory...  [0s]
Processing query block 1, reference block 8/14, shape 2/2, index chunk 3/4.
Building reference seed array...  [12.902s]
Building query seed array...  [0.221s]
Computing hash join...  [3.71s]
Masking low complexity seeds...  [0.061s]
Searching alignments...  [1.787s]
Deallocating memory...  [0s]
Processing query block 1, reference block 8/14, shape 2/2, index chunk 4/4.
Building reference seed array...  [9.549s]
Building query seed array...  [0.201s]
Computing hash join...  [3.608s]
Masking low complexity seeds...  [0.059s]
Searching alignments...  [1.813s]
Deallocating memory...  [0s]
Deallocating buffers...  [0.101s]
Clearing query masking...  [0.043s]
Opening temporary output file...  [0s]
Computing alignments... Loading trace points...  [13.621s]
Sorting trace points...  [0.401s]
Computing alignments...  [34.421s]
Deallocating buffers...  [0.008s]
Loading trace points...  [0s]
 [49.87s]
Deallocating reference...  [0.084s]
Loading reference sequences...  [30.212s]
Masking reference...  [32.025s]
Initializing dictionary...  [0.077s]
Initializing temporary storage...  [0.008s]
Building reference histograms...  [32.091s]
Allocating buffers...  [0s]
Processing query block 1, reference block 9/14, shape 1/2, index chunk 1/4.
Building reference seed array...  [10.419s]
Building query seed array...  [0.196s]
Computing hash join...  [3.741s]
Masking low complexity seeds...  [0.06s]
Searching alignments...  [1.927s]
Deallocating memory...  [0s]
Processing query block 1, reference block 9/14, shape 1/2, index chunk 2/4.
Building reference seed array...  [12.144s]
Building query seed array...  [0.221s]
Computing hash join...  [3.764s]
Masking low complexity seeds...  [0.057s]
Searching alignments...  [1.848s]
Deallocating memory...  [0s]
Processing query block 1, reference block 9/14, shape 1/2, index chunk 3/4.
Building reference seed array...  [13.014s]
Building query seed array...  [0.242s]
Computing hash join...  [3.846s]
Masking low complexity seeds...  [0.06s]
Searching alignments...  [1.844s]
Deallocating memory...  [0s]
Processing query block 1, reference block 9/14, shape 1/2, index chunk 4/4.
Building reference seed array...  [9.822s]
Building query seed array...  [0.19s]
Computing hash join...  [3.735s]
Masking low complexity seeds...  [0.06s]
Searching alignments...  [1.808s]
Deallocating memory...  [0s]
Processing query block 1, reference block 9/14, shape 2/2, index chunk 1/4.
Building reference seed array...  [9.834s]
Building query seed array...  [0.187s]
Computing hash join...  [3.692s]
Masking low complexity seeds...  [0.064s]
Searching alignments...  [1.803s]
Deallocating memory...  [0s]
Processing query block 1, reference block 9/14, shape 2/2, index chunk 2/4.
Building reference seed array...  [12.124s]
Building query seed array...  [0.262s]
Computing hash join...  [3.766s]
Masking low complexity seeds...  [0.063s]
Searching alignments...  [1.76s]
Deallocating memory...  [0s]
Processing query block 1, reference block 9/14, shape 2/2, index chunk 3/4.
Building reference seed array...  [13.736s]
Building query seed array...  [0.222s]
Computing hash join...  [3.749s]
Masking low complexity seeds...  [0.065s]
Searching alignments...  [1.737s]
Deallocating memory...  [0s]
Processing query block 1, reference block 9/14, shape 2/2, index chunk 4/4.
Building reference seed array...  [9.493s]
Building query seed array...  [0.21s]
Computing hash join...  [3.695s]
Masking low complexity seeds...  [0.06s]
Searching alignments...  [1.745s]
Deallocating memory...  [0s]
Deallocating buffers...  [0.084s]
Clearing query masking...  [0.037s]
Opening temporary output file...  [0.001s]
Computing alignments... Loading trace points...  [5.652s]
Sorting trace points...  [0.346s]
Computing alignments...  [30.264s]
Deallocating buffers...  [0.015s]
Loading trace points...  [0s]
 [37.492s]
Deallocating reference...  [0.102s]
Loading reference sequences...  [30.084s]
Masking reference...  [32.084s]
Initializing dictionary...  [0.081s]
Initializing temporary storage...  [0.008s]
Building reference histograms...  [32.032s]
Allocating buffers...  [0s]
Processing query block 1, reference block 10/14, shape 1/2, index chunk 1/4.
Building reference seed array...  [10.305s]
Building query seed array...  [0.225s]
Computing hash join...  [3.815s]
Masking low complexity seeds...  [0.06s]
Searching alignments...  [1.961s]
Deallocating memory...  [0s]
Processing query block 1, reference block 10/14, shape 1/2, index chunk 2/4.
Building reference seed array...  [12.582s]
Building query seed array...  [0.209s]
Computing hash join...  [3.777s]
Masking low complexity seeds...  [0.059s]
Searching alignments...  [1.87s]
Deallocating memory...  [0s]
Processing query block 1, reference block 10/14, shape 1/2, index chunk 3/4.
Building reference seed array...  [12.952s]
Building query seed array...  [0.221s]
Computing hash join...  [3.747s]
Masking low complexity seeds...  [0.058s]
Searching alignments...  [1.845s]
Deallocating memory...  [0s]
Processing query block 1, reference block 10/14, shape 1/2, index chunk 4/4.
Building reference seed array...  [9.498s]
Building query seed array...  [0.179s]
Computing hash join...  [3.818s]
Masking low complexity seeds...  [0.063s]
Searching alignments...  [1.703s]
Deallocating memory...  [0s]
Processing query block 1, reference block 10/14, shape 2/2, index chunk 1/4.
Building reference seed array...  [9.762s]
Building query seed array...  [0.211s]
Computing hash join...  [3.695s]
Masking low complexity seeds...  [0.061s]
Searching alignments...  [1.742s]
Deallocating memory...  [0s]
Processing query block 1, reference block 10/14, shape 2/2, index chunk 2/4.
Building reference seed array...  [11.77s]
Building query seed array...  [0.209s]
Computing hash join...  [3.669s]
Masking low complexity seeds...  [0.06s]
Searching alignments...  [1.655s]
Deallocating memory...  [0s]
Processing query block 1, reference block 10/14, shape 2/2, index chunk 3/4.
Building reference seed array...  [12.926s]
Building query seed array...  [0.222s]
Computing hash join...  [3.686s]
Masking low complexity seeds...  [0.101s]
Searching alignments...  [1.713s]
Deallocating memory...  [0s]
Processing query block 1, reference block 10/14, shape 2/2, index chunk 4/4.
Building reference seed array...  [9.852s]
Building query seed array...  [0.182s]
Computing hash join...  [3.6s]
Masking low complexity seeds...  [0.058s]
Searching alignments...  [1.737s]
Deallocating memory...  [0s]
Deallocating buffers...  [0.086s]
Clearing query masking...  [0.037s]
Opening temporary output file...  [0.001s]
Computing alignments... Loading trace points...  [4.384s]
Sorting trace points...  [0.402s]
Computing alignments...  [57.283s]
Deallocating buffers...  [0.014s]
Loading trace points...  [0s]
 [63.597s]
Deallocating reference...  [0.1s]
Loading reference sequences...  [32.063s]
Masking reference...  [32.118s]
Initializing dictionary...  [0.078s]
Initializing temporary storage...  [0.008s]
Building reference histograms...  [32.314s]
Allocating buffers...  [0s]
Processing query block 1, reference block 11/14, shape 1/2, index chunk 1/4.
Building reference seed array...  [10.098s]
Building query seed array...  [0.205s]
Computing hash join...  [3.808s]
Masking low complexity seeds...  [0.062s]
Searching alignments...  [1.902s]
Deallocating memory...  [0s]
Processing query block 1, reference block 11/14, shape 1/2, index chunk 2/4.
Building reference seed array...  [11.843s]
Building query seed array...  [0.207s]
Computing hash join...  [3.695s]
Masking low complexity seeds...  [0.059s]
Searching alignments...  [1.819s]
Deallocating memory...  [0s]
Processing query block 1, reference block 11/14, shape 1/2, index chunk 3/4.
Building reference seed array...  [13.147s]
Building query seed array...  [0.209s]
Computing hash join...  [3.797s]
Masking low complexity seeds...  [0.057s]
Searching alignments...  [1.801s]
Deallocating memory...  [0s]
Processing query block 1, reference block 11/14, shape 1/2, index chunk 4/4.
Building reference seed array...  [9.772s]
Building query seed array...  [0.204s]
Computing hash join...  [3.773s]
Masking low complexity seeds...  [0.057s]
Searching alignments...  [1.761s]
Deallocating memory...  [0s]
Processing query block 1, reference block 11/14, shape 2/2, index chunk 1/4.
Building reference seed array...  [9.615s]
Building query seed array...  [0.232s]
Computing hash join...  [3.676s]
Masking low complexity seeds...  [0.06s]
Searching alignments...  [1.729s]
Deallocating memory...  [0s]
Processing query block 1, reference block 11/14, shape 2/2, index chunk 2/4.
Building reference seed array...  [12.113s]
Building query seed array...  [0.21s]
Computing hash join...  [3.748s]
Masking low complexity seeds...  [0.067s]
Searching alignments...  [1.654s]
Deallocating memory...  [0s]
Processing query block 1, reference block 11/14, shape 2/2, index chunk 3/4.
Building reference seed array...  [13.155s]
Building query seed array...  [0.233s]
Computing hash join...  [3.781s]
Masking low complexity seeds...  [0.067s]
Searching alignments...  [1.641s]
Deallocating memory...  [0s]
Processing query block 1, reference block 11/14, shape 2/2, index chunk 4/4.
Building reference seed array...  [9.528s]
Building query seed array...  [0.204s]
Computing hash join...  [3.688s]
Masking low complexity seeds...  [0.066s]
Searching alignments...  [1.668s]
Deallocating memory...  [0s]
Deallocating buffers...  [0.086s]
Clearing query masking...  [0.039s]
Opening temporary output file...  [0s]
Computing alignments... Loading trace points...  [3.314s]
Sorting trace points...  [0.385s]
Computing alignments...  [31.122s]
Deallocating buffers...  [0.009s]
Loading trace points...  [0s]
 [38.095s]
Deallocating reference...  [0.113s]
Loading reference sequences...  [329.755s]
Masking reference...  [30.903s]
Initializing dictionary...  [0.078s]
Initializing temporary storage...  [0.007s]
Building reference histograms...  [33.098s]
Allocating buffers...  [0s]
Processing query block 1, reference block 12/14, shape 1/2, index chunk 1/4.
Building reference seed array...  [10.029s]
Building query seed array...  [0.196s]
Computing hash join...  [3.714s]
Masking low complexity seeds...  [0.058s]
Searching alignments...  [1.915s]
Deallocating memory...  [0s]
Processing query block 1, reference block 12/14, shape 1/2, index chunk 2/4.
Building reference seed array...  [12.956s]
Building query seed array...  [0.246s]
Computing hash join...  [3.806s]
Masking low complexity seeds...  [0.061s]
Searching alignments...  [1.842s]
Deallocating memory...  [0s]
Processing query block 1, reference block 12/14, shape 1/2, index chunk 3/4.
Building reference seed array...  [12.585s]
Building query seed array...  [0.209s]
Computing hash join...  [3.797s]
Masking low complexity seeds...  [0.061s]
Searching alignments...  [1.806s]
Deallocating memory...  [0s]
Processing query block 1, reference block 12/14, shape 1/2, index chunk 4/4.
Building reference seed array...  [9.972s]
Building query seed array...  [0.192s]
Computing hash join...  [3.721s]
Masking low complexity seeds...  [0.066s]
Searching alignments...  [1.844s]
Deallocating memory...  [0s]
Processing query block 1, reference block 12/14, shape 2/2, index chunk 1/4.
Building reference seed array...  [9.835s]
Building query seed array...  [0.202s]
Computing hash join...  [3.639s]
Masking low complexity seeds...  [0.058s]
Searching alignments...  [1.801s]
Deallocating memory...  [0s]
Processing query block 1, reference block 12/14, shape 2/2, index chunk 2/4.
Building reference seed array...  [12.361s]
Building query seed array...  [0.203s]
Computing hash join...  [3.676s]
Masking low complexity seeds...  [0.063s]
Searching alignments...  [1.769s]
Deallocating memory...  [0s]
Processing query block 1, reference block 12/14, shape 2/2, index chunk 3/4.
Building reference seed array...  [12.917s]
Building query seed array...  [0.233s]
Computing hash join...  [3.671s]
Masking low complexity seeds...  [0.061s]
Searching alignments...  [1.702s]
Deallocating memory...  [0s]
Processing query block 1, reference block 12/14, shape 2/2, index chunk 4/4.
Building reference seed array...  [9.773s]
Building query seed array...  [0.192s]
Computing hash join...  [3.716s]
Masking low complexity seeds...  [0.061s]
Searching alignments...  [1.759s]
Deallocating memory...  [0s]
Deallocating buffers...  [0.085s]
Clearing query masking...  [0.037s]
Opening temporary output file...  [0.001s]
Computing alignments... Loading trace points...  [5.363s]
Sorting trace points...  [0.438s]
Computing alignments...  [52.675s]
Deallocating buffers...  [0.013s]
Loading trace points...  [0s]
 [59.539s]
Deallocating reference...  [0.101s]
Loading reference sequences...  [32.289s]
Masking reference...  [31.371s]
Initializing dictionary...  [0.077s]
Initializing temporary storage...  [0.009s]
Building reference histograms...  [32.206s]
Allocating buffers...  [0s]
Processing query block 1, reference block 13/14, shape 1/2, index chunk 1/4.
Building reference seed array...  [10.133s]
Building query seed array...  [0.23s]
Computing hash join...  [3.799s]
Masking low complexity seeds...  [0.059s]
Searching alignments...  [1.891s]
Deallocating memory...  [0s]
Processing query block 1, reference block 13/14, shape 1/2, index chunk 2/4.
Building reference seed array...  [12.194s]
Building query seed array...  [0.211s]
Computing hash join...  [3.814s]
Masking low complexity seeds...  [0.06s]
Searching alignments...  [1.808s]
Deallocating memory...  [0s]
Processing query block 1, reference block 13/14, shape 1/2, index chunk 3/4.
Building reference seed array...  [13.228s]
Building query seed array...  [0.214s]
Computing hash join...  [3.866s]
Masking low complexity seeds...  [0.06s]
Searching alignments...  [1.826s]
Deallocating memory...  [0s]
Processing query block 1, reference block 13/14, shape 1/2, index chunk 4/4.
Building reference seed array...  [9.52s]
Building query seed array...  [0.185s]
Computing hash join...  [3.8s]
Masking low complexity seeds...  [0.058s]
Searching alignments...  [1.713s]
Deallocating memory...  [0s]
Processing query block 1, reference block 13/14, shape 2/2, index chunk 1/4.
Building reference seed array...  [9.668s]
Building query seed array...  [0.219s]
Computing hash join...  [3.718s]
Masking low complexity seeds...  [0.062s]
Searching alignments...  [1.706s]
Deallocating memory...  [0s]
Processing query block 1, reference block 13/14, shape 2/2, index chunk 2/4.
Building reference seed array...  [12.255s]
Building query seed array...  [0.213s]
Computing hash join...  [3.762s]
Masking low complexity seeds...  [0.064s]
Searching alignments...  [1.692s]
Deallocating memory...  [0s]
Processing query block 1, reference block 13/14, shape 2/2, index chunk 3/4.
Building reference seed array...  [13.204s]
Building query seed array...  [0.221s]
Computing hash join...  [3.742s]
Masking low complexity seeds...  [0.061s]
Searching alignments...  [1.697s]
Deallocating memory...  [0s]
Processing query block 1, reference block 13/14, shape 2/2, index chunk 4/4.
Building reference seed array...  [9.668s]
Building query seed array...  [0.191s]
Computing hash join...  [3.753s]
Masking low complexity seeds...  [0.064s]
Searching alignments...  [1.714s]
Deallocating memory...  [0s]
Deallocating buffers...  [0.089s]
Clearing query masking...  [0.037s]
Opening temporary output file...  [0.001s]
Computing alignments... Loading trace points...  [8.014s]
Sorting trace points...  [0.428s]
Computing alignments...  [31.059s]
Deallocating buffers...  [0.008s]
Loading trace points...  [0s]
 [40.741s]
Deallocating reference...  [0.083s]
Loading reference sequences...  [27.117s]
Masking reference...  [24.995s]
Initializing dictionary...  [0.063s]
Initializing temporary storage...  [0.008s]
Building reference histograms...  [26.235s]
Allocating buffers...  [0s]
Processing query block 1, reference block 14/14, shape 1/2, index chunk 1/4.
Building reference seed array...  [8.548s]
Building query seed array...  [0.201s]
Computing hash join...  [3.147s]
Masking low complexity seeds...  [0.06s]
Searching alignments...  [1.555s]
Deallocating memory...  [0s]
Processing query block 1, reference block 14/14, shape 1/2, index chunk 2/4.
Building reference seed array...  [10.033s]
Building query seed array...  [0.213s]
Computing hash join...  [3.072s]
Masking low complexity seeds...  [0.055s]
Searching alignments...  [1.537s]
Deallocating memory...  [0s]
Processing query block 1, reference block 14/14, shape 1/2, index chunk 3/4.
Building reference seed array...  [10.198s]
Building query seed array...  [0.196s]
Computing hash join...  [3.059s]
Masking low complexity seeds...  [0.055s]
Searching alignments...  [1.465s]
Deallocating memory...  [0s]
Processing query block 1, reference block 14/14, shape 1/2, index chunk 4/4.
Building reference seed array...  [8.533s]
Building query seed array...  [0.208s]
Computing hash join...  [3.108s]
Masking low complexity seeds...  [0.06s]
Searching alignments...  [1.512s]
Deallocating memory...  [0s]
Processing query block 1, reference block 14/14, shape 2/2, index chunk 1/4.
Building reference seed array...  [7.865s]
Building query seed array...  [0.187s]
Computing hash join...  [3.015s]
Masking low complexity seeds...  [0.057s]
Searching alignments...  [1.454s]
Deallocating memory...  [0s]
Processing query block 1, reference block 14/14, shape 2/2, index chunk 2/4.
Building reference seed array...  [10.225s]
Building query seed array...  [0.211s]
Computing hash join...  [3.007s]
Masking low complexity seeds...  [0.056s]
Searching alignments...  [1.431s]
Deallocating memory...  [0s]
Processing query block 1, reference block 14/14, shape 2/2, index chunk 3/4.
Building reference seed array...  [10.852s]
Building query seed array...  [0.243s]
Computing hash join...  [2.974s]
Masking low complexity seeds...  [0.06s]
Searching alignments...  [1.455s]
Deallocating memory...  [0s]
Processing query block 1, reference block 14/14, shape 2/2, index chunk 4/4.
Building reference seed array...  [8.15s]
Building query seed array...  [0.183s]
Computing hash join...  [2.964s]
Masking low complexity seeds...  [0.059s]
Searching alignments...  [1.431s]
Deallocating memory...  [0s]
Deallocating buffers...  [0.07s]
Clearing query masking...  [0.037s]
Opening temporary output file...  [0s]
Computing alignments... Loading trace points...  [2.505s]
Sorting trace points...  [0.357s]
Computing alignments...  [23.777s]
Deallocating buffers...  [0.006s]
Loading trace points...  [0s]
 [27.378s]
Deallocating reference...  [0.065s]
Loading reference sequences...  [0.077s]
Deallocating buffers...  [0s]
Joining output blocks... Joining output blocks...  [19.724s]
 [19.724s]
Deallocating queries...  [0.014s]
Loading query sequences...  [0s]
Closing the input file...  [0s]
Closing the output file... Loading dictionary...  [2.353s]
 [2.513s]
Closing the database...  [0s]
Cleaning up...  [0s]
Total time = 5490.08s
Reported 595588 pairwise alignments, 595588 HSPs.
48811 queries aligned.
DIAMOND BLASTx complete: Trinity.fasta-phel-unmapped.blastx.meganized.daa

Now MEGANizing Trinity.fasta-phel-unmapped.blastx.meganized.daa
Version   MEGAN Community Edition (version 6.22.0, built 19 Feb 2022)
Author(s) Daniel H. Huson
Copyright (C) 2022 Daniel H. Huson. This program comes with ABSOLUTELY NO WARRANTY.
Java version: 17.0.2
Functional classifications to use: EC, EGGNOG, GTDB, INTERPRO2GO, SEED
Loading ncbi.map: 2,396,736
Loading ncbi.tre: 2,396,740
Loading ec.map:     8,200
Loading ec.tre:     8,204
Loading eggnog.map:    30,875
Loading eggnog.tre:    30,986
Loading gtdb.map:   240,103
Loading gtdb.tre:   240,107
Loading interpro2go.map:    14,242
Loading interpro2go.tre:    28,907
Loading seed.map:       961
Loading seed.tre:       962
Meganizing: Trinity.fasta-phel-unmapped.blastx.meganized.daa
Meganizing init
Annotating DAA file using FAST mode (accession database and first accession per line)
Annotating references
10% 100% (44.6s)
Writing
10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (1.6s)
Binning reads Initializing...
Initializing binning...
Using 'Naive LCA' algorithm for binning: Taxonomy
Using Best-Hit algorithm for binning: SEED
Using Best-Hit algorithm for binning: EGGNOG
Using 'Naive LCA' algorithm for binning: GTDB
Using Best-Hit algorithm for binning: EC
Using Best-Hit algorithm for binning: INTERPRO2GO
Binning reads...
Binning reads Analyzing alignments
10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (7.8s)
Total reads:           48,811
With hits:              48,811 
Alignments:            595,588
Assig. Taxonomy:        47,578
Assig. SEED:                77
Assig. EGGNOG:              20
Assig. GTDB:               213
Assig. EC:               1,223
Assig. INTERPRO2GO:      1,084
MinSupport set to: 24
Binning reads Applying min-support & disabled filter to Taxonomy...
10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (0.5s)
Min-supp. changes:         323
Binning reads Applying min-support & disabled filter to GTDB...
10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (0.2s)
Min-supp. changes:          60
Binning reads Writing classification tables
10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (0.1s)
Binning reads Syncing
100% (0.0s)
Class. Taxonomy:            90
Class. SEED:                33
Class. EGGNOG:              19
Class. GTDB:                 7
Class. EC:                 351
Class. INTERPRO2GO:        414
Total time:  64s
Peak memory: 4.4 of 195.3G
MEGANization of Trinity.fasta-phel-unmapped.blastx.meganized.daa completed.


Generating MD5 checksums for 20241108-phel-diamond-meganizer-trinity_unmapped.sh:
d750d0224af482fff4e43ec558b846ce  20241108-phel-diamond-meganizer-trinity_unmapped.sh


Generating MD5 checksums for slurm-5473879.out:
8b2114b86b2950705ed738ba604c87a1  slurm-5473879.out


Generating MD5 checksums for Trinity.fasta:
1876d6df883f224bc67a916ced128d22  Trinity.fasta


Generating MD5 checksums for Trinity.fasta-phel-unmapped.blastx.meganized.daa:
c9eb53478aa937ea7e094e023895918c  Trinity.fasta-phel-unmapped.blastx.meganized.daa

Logging program options...
Finished logging programs options.

Logging system /gscratch/sw/intel-201703/compilers_and_libraries_2017.2.174/linux/mpi/intel64/bin:/gscratch/sw/intel-201703/compilers_and_libraries_2017.2.174/linux/bin/intel64:/gscratch/sw/intel-201703/debugger_2017/gdb/intel64_mic/bin:/sw/intel-python-2017.2.045/intelpython3/bin:/gscratch/srlab/programs/miniforge3/condabin:/usr/lusers/samwhite/bin:/gscratch/srlab/programs/cmake-3.12.1/bin:/usr/lusers/samwhite/perl5/bin:/sw/local/bin:/usr/lib64/qt-3.3/bin:/sw/modules-1.775/bin:/usr/lpp/mmfs/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin:/gscratch/srlab/programs/bowtie2-2.3.5.1-linux-x86_64:/gscratch/srlab/programs/Augustus-3.3.2/bin:/gscratch/srlab/programs/FastQC:/gscratch/srlab/programs/jellyfish-2.3.0/bin:/gscratch/srlab/programs/salmon-1.1.0_linux_x86_64/bin:/gscratch/srlab/programs/samtools-1.10:/gscratch/srlab/programs/pcre2-10.37:/gscratch/srlab/programs/R-4.1.1/bin:/gscratch/srlab/programs/tree-1.8.0:/gscratch/srlab/programs/graphviz-2.40.1/bin:/usr/lusers/samwhite/bin:/usr/lusers/samwhite/edirect...
Finished logging system /gscratch/sw/intel-201703/compilers_and_libraries_2017.2.174/linux/mpi/intel64/bin:/gscratch/sw/intel-201703/compilers_and_libraries_2017.2.174/linux/bin/intel64:/gscratch/sw/intel-201703/debugger_2017/gdb/intel64_mic/bin:/sw/intel-python-2017.2.045/intelpython3/bin:/gscratch/srlab/programs/miniforge3/condabin:/usr/lusers/samwhite/bin:/gscratch/srlab/programs/cmake-3.12.1/bin:/usr/lusers/samwhite/perl5/bin:/sw/local/bin:/usr/lib64/qt-3.3/bin:/sw/modules-1.775/bin:/usr/lpp/mmfs/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin:/gscratch/srlab/programs/bowtie2-2.3.5.1-linux-x86_64:/gscratch/srlab/programs/Augustus-3.3.2/bin:/gscratch/srlab/programs/FastQC:/gscratch/srlab/programs/jellyfish-2.3.0/bin:/gscratch/srlab/programs/salmon-1.1.0_linux_x86_64/bin:/gscratch/srlab/programs/samtools-1.10:/gscratch/srlab/programs/pcre2-10.37:/gscratch/srlab/programs/R-4.1.1/bin:/gscratch/srlab/programs/tree-1.8.0:/gscratch/srlab/programs/graphviz-2.40.1/bin:/usr/lusers/samwhite/bin:/usr/lusers/samwhite/edirect.