Generating MD5 checksum for /gscratch/scrubbed/samwhite/data/P_helianthoides/RNAseq/PSC-0519_unmapped_reads.1.fastq... 6d84d7b2e6dc36acdcacb0b95f7dd75e /gscratch/scrubbed/samwhite/data/P_helianthoides/RNAseq/PSC-0519_unmapped_reads.1.fastq Running DIAMOND BLASTx on /gscratch/scrubbed/samwhite/data/P_helianthoides/RNAseq/PSC-0519_unmapped_reads.1.fastq. diamond v2.1.1.155 (C) Max Planck Society for the Advancement of Science Documentation, support and updates available at http://www.diamondsearch.org Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021) #CPU threads: 40 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: Percentage range of top alignment score to report hits: 5 Opening the database... [0.585s] Database: /gscratch/srlab/blastdbs/20230215-ncbi-nr/20230215-ncbi-nr.dmnd (type: Diamond database, sequences: 526308523, letters: 207134680681) Block size = 15000000000 Opening the input file... [0.509s] Opening the output file... [0s] Loading query sequences... [27.159s] Masking queries... [9.661s] Algorithm: Double-indexed Building query histograms... [8.477s] Loading reference sequences... [38.497s] Masking reference... [32.152s] Initializing dictionary... [0.081s] Initializing temporary storage... [0.014s] Building reference histograms... [31.861s] Allocating buffers... [0.001s] Processing query block 1, reference block 1/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.273s] Building query seed array... [1.179s] Computing hash join... [4.874s] Masking low complexity seeds... [0.174s] Searching alignments... [102.325s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.516s] Building query seed array... [1.397s] Computing hash join... [4.728s] Masking low complexity seeds... [0.163s] Searching alignments... [70.033s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.021s] Building query seed array... [1.47s] Computing hash join... [4.69s] Masking low complexity seeds... [0.167s] Searching alignments... [92.286s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.511s] Building query seed array... [1.214s] Computing hash join... [4.82s] Masking low complexity seeds... [0.17s] Searching alignments... [50.334s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.251s] Building query seed array... [1.096s] Computing hash join... [4.555s] Masking low complexity seeds... [0.158s] Searching alignments... [80.611s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.32s] Building query seed array... [1.301s] Computing hash join... [4.613s] Masking low complexity seeds... [0.16s] Searching alignments... [44.087s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.969s] Building query seed array... [1.338s] Computing hash join... [4.728s] Masking low complexity seeds... [0.169s] Searching alignments... [39.793s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.016s] Building query seed array... [1.108s] Computing hash join... [4.608s] Masking low complexity seeds... [0.159s] Searching alignments... [34.049s] Deallocating memory... [0s] Deallocating buffers... [0.143s] Clearing query masking... [0.69s] Opening temporary output file... [0.002s] Computing alignments... Loading trace points... [7.867s] Sorting trace points... [1.433s] Computing alignments... [48.134s] Deallocating buffers... [0.047s] Loading trace points... [0s] Sorting trace points... [1.019s] Computing alignments... [47.614s] Deallocating buffers... [0.027s] Loading trace points... [0.11s] Sorting trace points... [1.102s] Computing alignments... [47.742s] Deallocating buffers... [0.028s] Loading trace points... [0.093s] Sorting trace points... [1.393s] Computing alignments... [48.116s] Deallocating buffers... [0.025s] Loading trace points... [0.219s] Sorting trace points... [1.172s] Computing alignments... [45.585s] Deallocating buffers... [0.036s] Loading trace points... [0.122s] Sorting trace points... [0.998s] Computing alignments... [44.992s] Deallocating buffers... [0.037s] Loading trace points... [0.184s] Sorting trace points... [1.361s] Computing alignments... [46.297s] Deallocating buffers... [0.033s] Loading trace points... [0.112s] Sorting trace points... [1.203s] Computing alignments... [47.29s] Deallocating buffers... [0.025s] Loading trace points... [0.001s] Sorting trace points... [1.088s] Computing alignments... [45.652s] Deallocating buffers... [0.032s] Loading trace points... [0.195s] Sorting trace points... [0.981s] Computing alignments... [44.824s] Deallocating buffers... [0.026s] Loading trace points... [0.071s] Sorting trace points... [1.234s] Computing alignments... [43.652s] Deallocating buffers... [0.021s] Loading trace points... [0.081s] Sorting trace points... [1.332s] Computing alignments... [47.204s] Deallocating buffers... [0.034s] Loading trace points... [0.197s] Sorting trace points... [1.24s] Computing alignments... [44.103s] Deallocating buffers... [0.029s] Loading trace points... [1.03s] Sorting trace points... [1.264s] Computing alignments... [42.929s] Deallocating buffers... [0.036s] Loading trace points... [0.089s] Sorting trace points... [0.955s] Computing alignments... [41.413s] Deallocating buffers... [0.023s] Loading trace points... [0s] Sorting trace points... [1.267s] Computing alignments... [45.14s] Deallocating buffers... [0.027s] Loading trace points... [0s] [760.881s] Deallocating reference... [0.062s] Loading reference sequences... [43.691s] Masking reference... [30.969s] Initializing dictionary... [0.077s] Initializing temporary storage... [0.008s] Building reference histograms... [33.079s] Allocating buffers... [0.001s] Processing query block 1, reference block 2/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.172s] Building query seed array... [1.155s] Computing hash join... [4.7s] Masking low complexity seeds... [0.169s] Searching alignments... [101.636s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.196s] Building query seed array... [1.326s] Computing hash join... [4.723s] Masking low complexity seeds... [0.168s] Searching alignments... [66.363s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.482s] Building query seed array... [1.431s] Computing hash join... [4.728s] Masking low complexity seeds... [0.164s] Searching alignments... [90.829s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 1/2, index chunk 4/4. Building reference seed array... [9.948s] Building query seed array... [1.164s] Computing hash join... [4.649s] Masking low complexity seeds... [0.164s] Searching alignments... [49.085s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.339s] Building query seed array... [1.149s] Computing hash join... [4.501s] Masking low complexity seeds... [0.157s] Searching alignments... [78.644s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.43s] Building query seed array... [1.301s] Computing hash join... [4.54s] Masking low complexity seeds... [0.159s] Searching alignments... [44.374s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.495s] Building query seed array... [1.413s] Computing hash join... [4.673s] Masking low complexity seeds... [0.177s] Searching alignments... [37.666s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.246s] Building query seed array... [1.144s] Computing hash join... [4.581s] Masking low complexity seeds... [0.169s] Searching alignments... [33.324s] Deallocating memory... [0s] Deallocating buffers... [0.158s] Clearing query masking... [0.68s] Opening temporary output file... [0.002s] Computing alignments... Loading trace points... [7.93s] Sorting trace points... [1.176s] Computing alignments... [46.388s] Deallocating buffers... [0.028s] Loading trace points... [0.153s] Sorting trace points... [1.036s] Computing alignments... [47.087s] Deallocating buffers... [0.028s] Loading trace points... [0.096s] Sorting trace points... [1.326s] Computing alignments... [46.193s] Deallocating buffers... [0.033s] Loading trace points... [0.083s] Sorting trace points... [1.209s] Computing alignments... [47.725s] Deallocating buffers... [0.026s] Loading trace points... [0.085s] Sorting trace points... [1.347s] Computing alignments... [45.275s] Deallocating buffers... [0.016s] Loading trace points... [0.098s] Sorting trace points... [1.031s] Computing alignments... [44.071s] Deallocating buffers... [0.027s] Loading trace points... [0.143s] Sorting trace points... [1.038s] Computing alignments... [45.711s] Deallocating buffers... [0.032s] Loading trace points... [0.074s] Sorting trace points... [1.346s] Computing alignments... [46.281s] Deallocating buffers... [0.016s] Loading trace points... [0.113s] Sorting trace points... [1.091s] Computing alignments... [45.056s] Deallocating buffers... [0.032s] Loading trace points... [0.087s] Sorting trace points... [1.318s] Computing alignments... [44.524s] Deallocating buffers... [0.024s] Loading trace points... [0.068s] Sorting trace points... [0.969s] Computing alignments... [42.932s] Deallocating buffers... [0.025s] Loading trace points... [0.155s] Sorting trace points... [1.193s] Computing alignments... [46.763s] Deallocating buffers... [0.025s] Loading trace points... [0.219s] Sorting trace points... [1.037s] Computing alignments... [43.177s] Deallocating buffers... [0.024s] Loading trace points... [0.351s] Sorting trace points... [1.263s] Computing alignments... [42.493s] Deallocating buffers... [0.015s] Loading trace points... [0.058s] Sorting trace points... [0.99s] Computing alignments... [40.62s] Deallocating buffers... [0.028s] Loading trace points... [0s] Sorting trace points... [1.276s] Computing alignments... [44.948s] Deallocating buffers... [0.019s] Loading trace points... [0s] [748.045s] Deallocating reference... [0.064s] Loading reference sequences... [40.686s] Masking reference... [31.201s] Initializing dictionary... [0.077s] Initializing temporary storage... [0.007s] Building reference histograms... [32.084s] Allocating buffers... [0.001s] Processing query block 1, reference block 3/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.284s] Building query seed array... [1.173s] Computing hash join... [4.661s] Masking low complexity seeds... [0.168s] Searching alignments... [98.193s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.67s] Building query seed array... [1.403s] Computing hash join... [4.764s] Masking low complexity seeds... [0.17s] Searching alignments... [66.994s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.604s] Building query seed array... [1.499s] Computing hash join... [4.688s] Masking low complexity seeds... [0.164s] Searching alignments... [94.416s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 1/2, index chunk 4/4. Building reference seed array... [9.829s] Building query seed array... [1.178s] Computing hash join... [4.716s] Masking low complexity seeds... [0.168s] Searching alignments... [49.393s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 2/2, index chunk 1/4. Building reference seed array... [9.851s] Building query seed array... [1.095s] Computing hash join... [4.635s] Masking low complexity seeds... [0.163s] Searching alignments... [80.726s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 2/2, index chunk 2/4. Building reference seed array... [11.948s] Building query seed array... [1.256s] Computing hash join... [4.63s] Masking low complexity seeds... [0.161s] Searching alignments... [44.231s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.098s] Building query seed array... [1.307s] Computing hash join... [4.537s] Masking low complexity seeds... [0.155s] Searching alignments... [38.403s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.219s] Building query seed array... [1.108s] Computing hash join... [4.49s] Masking low complexity seeds... [0.171s] Searching alignments... [34.986s] Deallocating memory... [0s] Deallocating buffers... [0.1s] Clearing query masking... [0.661s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [8.371s] Sorting trace points... [1.452s] Computing alignments... [46.628s] Deallocating buffers... [0.028s] Loading trace points... [0.182s] Sorting trace points... [1.27s] Computing alignments... [47.097s] Deallocating buffers... [0.017s] Loading trace points... [0.071s] Sorting trace points... [1.376s] Computing alignments... [47.083s] Deallocating buffers... [0.028s] Loading trace points... [0.177s] Sorting trace points... [1.053s] Computing alignments... [47.751s] Deallocating buffers... [0.018s] Loading trace points... [0.122s] Sorting trace points... [1.23s] Computing alignments... [45.687s] Deallocating buffers... [0.027s] Loading trace points... [0.11s] Sorting trace points... [1.128s] Computing alignments... [44.234s] Deallocating buffers... [0.026s] Loading trace points... [0.063s] Sorting trace points... [1.339s] Computing alignments... [46.61s] Deallocating buffers... [0.028s] Loading trace points... [0.059s] Sorting trace points... [1.094s] Computing alignments... [47.099s] Deallocating buffers... [0.035s] Loading trace points... [0.07s] Sorting trace points... [1.06s] Computing alignments... [45.22s] Deallocating buffers... [0.031s] Loading trace points... [0.124s] Sorting trace points... [1.298s] Computing alignments... [44.615s] Deallocating buffers... [0.024s] Loading trace points... [0.085s] Sorting trace points... [1.214s] Computing alignments... [42.911s] Deallocating buffers... [0.023s] Loading trace points... [0.075s] Sorting trace points... [1.065s] Computing alignments... [46.626s] Deallocating buffers... [0.027s] Loading trace points... [0.116s] Sorting trace points... [1.113s] Computing alignments... [43.181s] Deallocating buffers... [0.023s] Loading trace points... [0.117s] Sorting trace points... [1.014s] Computing alignments... [42.338s] Deallocating buffers... [0.025s] Loading trace points... [0.52s] Sorting trace points... [1.025s] Computing alignments... [41.018s] Deallocating buffers... [0.025s] Loading trace points... [0s] Sorting trace points... [1.129s] Computing alignments... [44.564s] Deallocating buffers... [0.016s] Loading trace points... [0s] [752.233s] Deallocating reference... [0.066s] Loading reference sequences... [32.303s] Masking reference... [31.288s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.008s] Building reference histograms... [32.69s] Allocating buffers... [0.001s] Processing query block 1, reference block 4/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.185s] Building query seed array... [1.183s] Computing hash join... [4.724s] Masking low complexity seeds... [0.17s] Searching alignments... [98.254s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.389s] Building query seed array... [1.429s] Computing hash join... [4.751s] Masking low complexity seeds... [0.169s] Searching alignments... [67.732s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.396s] Building query seed array... [1.462s] Computing hash join... [4.782s] Masking low complexity seeds... [0.171s] Searching alignments... [93.731s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 1/2, index chunk 4/4. Building reference seed array... [9.863s] Building query seed array... [1.182s] Computing hash join... [4.676s] Masking low complexity seeds... [0.163s] Searching alignments... [50.768s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.033s] Building query seed array... [1.063s] Computing hash join... [4.668s] Masking low complexity seeds... [0.16s] Searching alignments... [83.741s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 2/2, index chunk 2/4. Building reference seed array... [11.846s] Building query seed array... [1.268s] Computing hash join... [4.602s] Masking low complexity seeds... [0.168s] Searching alignments... [45.015s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.275s] Building query seed array... [1.369s] Computing hash join... [4.662s] Masking low complexity seeds... [0.166s] Searching alignments... [39.075s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.291s] Building query seed array... [1.118s] Computing hash join... [4.53s] Masking low complexity seeds... [0.156s] Searching alignments... [35.336s] Deallocating memory... [0s] Deallocating buffers... [0.154s] Clearing query masking... [0.676s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [11.182s] Sorting trace points... [1.444s] Computing alignments... [46.819s] Deallocating buffers... [0.031s] Loading trace points... [0.115s] Sorting trace points... [1.35s] Computing alignments... [47.916s] Deallocating buffers... [0.028s] Loading trace points... [0.299s] Sorting trace points... [1.034s] Computing alignments... [47.081s] Deallocating buffers... [0.033s] Loading trace points... [0.651s] Sorting trace points... [1.434s] Computing alignments... [47.814s] Deallocating buffers... [0.017s] Loading trace points... [0.178s] Sorting trace points... [1.247s] Computing alignments... [45.689s] Deallocating buffers... [0.024s] Loading trace points... [0.112s] Sorting trace points... [1.344s] Computing alignments... [44.728s] Deallocating buffers... [0.024s] Loading trace points... [0.001s] Sorting trace points... [1.322s] Computing alignments... [46.374s] Deallocating buffers... [0.033s] Loading trace points... [0.207s] Sorting trace points... [1.008s] Computing alignments... [47.221s] Deallocating buffers... [0.026s] Loading trace points... [0.082s] Sorting trace points... [0.979s] Computing alignments... [45.717s] Deallocating buffers... [0.032s] Loading trace points... [0.372s] Sorting trace points... [1.302s] Computing alignments... [45.108s] Deallocating buffers... [0.028s] Loading trace points... [1.258s] Sorting trace points... [1.171s] Computing alignments... [43.948s] Deallocating buffers... [0.03s] Loading trace points... [0.059s] Sorting trace points... [1.312s] Computing alignments... [46.674s] Deallocating buffers... [0.029s] Loading trace points... [0.106s] Sorting trace points... [1.247s] Computing alignments... [43.788s] Deallocating buffers... [0.025s] Loading trace points... [0.208s] Sorting trace points... [1.255s] Computing alignments... [42.639s] Deallocating buffers... [0.034s] Loading trace points... [0.057s] Sorting trace points... [1.22s] Computing alignments... [41.192s] Deallocating buffers... [0.024s] Loading trace points... [0s] Sorting trace points... [1.294s] Computing alignments... [45.352s] Deallocating buffers... [0.023s] Loading trace points... [0s] [763.504s] Deallocating reference... [0.092s] Loading reference sequences... [35.875s] Masking reference... [30.973s] Initializing dictionary... [0.077s] Initializing temporary storage... [0.008s] Building reference histograms... [33.001s] Allocating buffers... [0.001s] Processing query block 1, reference block 5/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.424s] Building query seed array... [1.252s] Computing hash join... [4.763s] Masking low complexity seeds... [0.166s] Searching alignments... [107.043s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.544s] Building query seed array... [1.363s] Computing hash join... [4.757s] Masking low complexity seeds... [0.171s] Searching alignments... [71.377s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.694s] Building query seed array... [1.519s] Computing hash join... [4.726s] Masking low complexity seeds... [0.166s] Searching alignments... [93.413s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.012s] Building query seed array... [1.192s] Computing hash join... [4.614s] Masking low complexity seeds... [0.162s] Searching alignments... [50.718s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.327s] Building query seed array... [1.137s] Computing hash join... [4.595s] Masking low complexity seeds... [0.164s] Searching alignments... [78.039s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.166s] Building query seed array... [1.257s] Computing hash join... [4.674s] Masking low complexity seeds... [0.161s] Searching alignments... [43.929s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.35s] Building query seed array... [1.348s] Computing hash join... [4.552s] Masking low complexity seeds... [0.161s] Searching alignments... [40.16s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.184s] Building query seed array... [1.122s] Computing hash join... [4.525s] Masking low complexity seeds... [0.154s] Searching alignments... [34.852s] Deallocating memory... [0s] Deallocating buffers... [0.157s] Clearing query masking... [0.673s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [7.902s] Sorting trace points... [1.322s] Computing alignments... [46.248s] Deallocating buffers... [0.025s] Loading trace points... [0.13s] Sorting trace points... [1.331s] Computing alignments... [47.363s] Deallocating buffers... [0.026s] Loading trace points... [0.301s] Sorting trace points... [1.405s] Computing alignments... [46.994s] Deallocating buffers... [0.029s] Loading trace points... [0.116s] Sorting trace points... [1.441s] Computing alignments... [47.992s] Deallocating buffers... [0.028s] Loading trace points... [0.186s] Sorting trace points... [1.34s] Computing alignments... [45.12s] Deallocating buffers... [0.028s] Loading trace points... [0.002s] Sorting trace points... [1.097s] Computing alignments... [44.812s] Deallocating buffers... [0.025s] Loading trace points... [0.27s] Sorting trace points... [1.356s] Computing alignments... [46.405s] Deallocating buffers... [0.029s] Loading trace points... [0.064s] Sorting trace points... [1.111s] Computing alignments... [46.923s] Deallocating buffers... [0.018s] Loading trace points... [0s] Sorting trace points... [1.332s] Computing alignments... [45.439s] Deallocating buffers... [0.024s] Loading trace points... [0.255s] Sorting trace points... [1.285s] Computing alignments... [44.668s] Deallocating buffers... [0.028s] Loading trace points... [0.101s] Sorting trace points... [1.206s] Computing alignments... [43.152s] Deallocating buffers... [0.023s] Loading trace points... [0.001s] Sorting trace points... [1.303s] Computing alignments... [46.548s] Deallocating buffers... [0.027s] Loading trace points... [0.265s] Sorting trace points... [1.136s] Computing alignments... [43.661s] Deallocating buffers... [0.026s] Loading trace points... [0.143s] Sorting trace points... [1.295s] Computing alignments... [42.546s] Deallocating buffers... [0.025s] Loading trace points... [0.107s] Sorting trace points... [0.941s] Computing alignments... [40.951s] Deallocating buffers... [0.024s] Loading trace points... [0s] Sorting trace points... [1.287s] Computing alignments... [44.708s] Deallocating buffers... [0.028s] Loading trace points... [0s] [754.076s] Deallocating reference... [0.087s] Loading reference sequences... [450.101s] Masking reference... [31.231s] Initializing dictionary... [0.077s] Initializing temporary storage... [0.006s] Building reference histograms... [32.574s] Allocating buffers... [0.001s] Processing query block 1, reference block 6/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.159s] Building query seed array... [1.201s] Computing hash join... [4.723s] Masking low complexity seeds... [0.166s] Searching alignments... [108.271s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.219s] Building query seed array... [1.414s] Computing hash join... [4.699s] Masking low complexity seeds... [0.164s] Searching alignments... [68.689s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.769s] Building query seed array... [1.512s] Computing hash join... [4.608s] Masking low complexity seeds... [0.161s] Searching alignments... [88.528s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.225s] Building query seed array... [1.214s] Computing hash join... [4.688s] Masking low complexity seeds... [0.168s] Searching alignments... [48.118s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 2/2, index chunk 1/4. Building reference seed array... [9.836s] Building query seed array... [1.086s] Computing hash join... [4.549s] Masking low complexity seeds... [0.157s] Searching alignments... [77.822s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.599s] Building query seed array... [1.28s] Computing hash join... [4.505s] Masking low complexity seeds... [0.151s] Searching alignments... [43.775s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.051s] Building query seed array... [1.321s] Computing hash join... [4.692s] Masking low complexity seeds... [0.162s] Searching alignments... [37.316s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.035s] Building query seed array... [1.092s] Computing hash join... [4.549s] Masking low complexity seeds... [0.159s] Searching alignments... [34.051s] Deallocating memory... [0s] Deallocating buffers... [0.14s] Clearing query masking... [0.638s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [8.177s] Sorting trace points... [1.409s] Computing alignments... [44.917s] Deallocating buffers... [0.026s] Loading trace points... [0.111s] Sorting trace points... [1.272s] Computing alignments... [45.622s] Deallocating buffers... [0.02s] Loading trace points... [0.058s] Sorting trace points... [1.023s] Computing alignments... [45.66s] Deallocating buffers... [0.026s] Loading trace points... [0.149s] Sorting trace points... [1.433s] Computing alignments... [46.05s] Deallocating buffers... [0.03s] Loading trace points... [0.138s] Sorting trace points... [0.994s] Computing alignments... [44.292s] Deallocating buffers... [0.026s] Loading trace points... [0.164s] Sorting trace points... [1.274s] Computing alignments... [43.429s] Deallocating buffers... [0.024s] Loading trace points... [0.145s] Sorting trace points... [1.361s] Computing alignments... [44.945s] Deallocating buffers... [0.025s] Loading trace points... [0.113s] Sorting trace points... [1.368s] Computing alignments... [45.806s] Deallocating buffers... [0.025s] Loading trace points... [0.067s] Sorting trace points... [1.309s] Computing alignments... [44.186s] Deallocating buffers... [0.028s] Loading trace points... [0.181s] Sorting trace points... [1.063s] Computing alignments... [43.396s] Deallocating buffers... [0.025s] Loading trace points... [0.122s] Sorting trace points... [0.929s] Computing alignments... [41.959s] Deallocating buffers... [0.024s] Loading trace points... [0.104s] Sorting trace points... [1.299s] Computing alignments... [45.04s] Deallocating buffers... [0.024s] Loading trace points... [0.07s] Sorting trace points... [1.224s] Computing alignments... [42.567s] Deallocating buffers... [0.026s] Loading trace points... [0.136s] Sorting trace points... [1.366s] Computing alignments... [41.519s] Deallocating buffers... [0.023s] Loading trace points... [0.091s] Sorting trace points... [1.232s] Computing alignments... [40.006s] Deallocating buffers... [0.015s] Loading trace points... [0s] Sorting trace points... [1.186s] Computing alignments... [44.378s] Deallocating buffers... [0.026s] Loading trace points... [0s] [733.942s] Deallocating reference... [0.083s] Loading reference sequences... [34.583s] Masking reference... [31.453s] Initializing dictionary... [0.076s] Initializing temporary storage... [0.007s] Building reference histograms... [33.013s] Allocating buffers... [0s] Processing query block 1, reference block 7/14, shape 1/2, index chunk 1/4. Building reference seed array... [9.848s] Building query seed array... [1.16s] Computing hash join... [4.765s] Masking low complexity seeds... [0.165s] Searching alignments... [98.779s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.735s] Building query seed array... [1.441s] Computing hash join... [4.706s] Masking low complexity seeds... [0.167s] Searching alignments... [69.448s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.274s] Building query seed array... [1.439s] Computing hash join... [4.596s] Masking low complexity seeds... [0.162s] Searching alignments... [91.358s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 1/2, index chunk 4/4. Building reference seed array... [9.839s] Building query seed array... [1.17s] Computing hash join... [4.775s] Masking low complexity seeds... [0.17s] Searching alignments... [49.247s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.362s] Building query seed array... [1.069s] Computing hash join... [4.512s] Masking low complexity seeds... [0.159s] Searching alignments... [79.732s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.382s] Building query seed array... [1.312s] Computing hash join... [4.615s] Masking low complexity seeds... [0.163s] Searching alignments... [45.331s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.439s] Building query seed array... [1.317s] Computing hash join... [4.693s] Masking low complexity seeds... [0.166s] Searching alignments... [39.153s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 2/2, index chunk 4/4. Building reference seed array... [9.986s] Building query seed array... [1.105s] Computing hash join... [4.605s] Masking low complexity seeds... [0.163s] Searching alignments... [34.212s] Deallocating memory... [0s] Deallocating buffers... [0.139s] Clearing query masking... [0.68s] Opening temporary output file... [0.002s] Computing alignments... Loading trace points... [8.932s] Sorting trace points... [1.402s] Computing alignments... [45.342s] Deallocating buffers... [0.022s] Loading trace points... [0.139s] Sorting trace points... [1.282s] Computing alignments... [46.534s] Deallocating buffers... [0.025s] Loading trace points... [0.065s] Sorting trace points... [1.382s] Computing alignments... [46.448s] Deallocating buffers... [0.026s] Loading trace points... [0.06s] Sorting trace points... [1.062s] Computing alignments... [47.184s] Deallocating buffers... [0.027s] Loading trace points... [0.105s] Sorting trace points... [1.317s] Computing alignments... [44.983s] Deallocating buffers... [0.024s] Loading trace points... [0.835s] Sorting trace points... [1.281s] Computing alignments... [44.46s] Deallocating buffers... [0.03s] Loading trace points... [0.211s] Sorting trace points... [1.18s] Computing alignments... [45.679s] Deallocating buffers... [0.028s] Loading trace points... [0.12s] Sorting trace points... [1.342s] Computing alignments... [46.436s] Deallocating buffers... [0.026s] Loading trace points... [0.112s] Sorting trace points... [1.029s] Computing alignments... [44.996s] Deallocating buffers... [0.028s] Loading trace points... [0.07s] Sorting trace points... [1.288s] Computing alignments... [44.237s] Deallocating buffers... [0.026s] Loading trace points... [0.07s] Sorting trace points... [1.244s] Computing alignments... [42.781s] Deallocating buffers... [0.019s] Loading trace points... [0.273s] Sorting trace points... [1.267s] Computing alignments... [46.416s] Deallocating buffers... [0.028s] Loading trace points... [0.152s] Sorting trace points... [1.252s] Computing alignments... [42.904s] Deallocating buffers... [0.026s] Loading trace points... [0.119s] Sorting trace points... [1.28s] Computing alignments... [42.564s] Deallocating buffers... [0.028s] Loading trace points... [0.187s] Sorting trace points... [1.143s] Computing alignments... [40.823s] Deallocating buffers... [0.025s] Loading trace points... [0s] Sorting trace points... [1.097s] Computing alignments... [44.297s] Deallocating buffers... [0.018s] Loading trace points... [0s] [747.829s] Deallocating reference... [0.057s] Loading reference sequences... [33.639s] Masking reference... [32.159s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.006s] Building reference histograms... [32.212s] Allocating buffers... [0.001s] Processing query block 1, reference block 8/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.441s] Building query seed array... [1.183s] Computing hash join... [4.661s] Masking low complexity seeds... [0.166s] Searching alignments... [103.831s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.54s] Building query seed array... [1.447s] Computing hash join... [4.643s] Masking low complexity seeds... [0.164s] Searching alignments... [66.597s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.587s] Building query seed array... [1.498s] Computing hash join... [4.726s] Masking low complexity seeds... [0.161s] Searching alignments... [95.201s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 1/2, index chunk 4/4. Building reference seed array... [9.915s] Building query seed array... [1.135s] Computing hash join... [4.654s] Masking low complexity seeds... [0.159s] Searching alignments... [50.403s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.367s] Building query seed array... [1.103s] Computing hash join... [4.629s] Masking low complexity seeds... [0.164s] Searching alignments... [80.172s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.477s] Building query seed array... [1.251s] Computing hash join... [4.58s] Masking low complexity seeds... [0.16s] Searching alignments... [44.381s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.108s] Building query seed array... [1.364s] Computing hash join... [4.609s] Masking low complexity seeds... [0.159s] Searching alignments... [38.317s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 2/2, index chunk 4/4. Building reference seed array... [9.893s] Building query seed array... [1.076s] Computing hash join... [4.594s] Masking low complexity seeds... [0.163s] Searching alignments... [33.672s] Deallocating memory... [0s] Deallocating buffers... [0.144s] Clearing query masking... [0.697s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [9.613s] Sorting trace points... [1.428s] Computing alignments... [45.025s] Deallocating buffers... [0.025s] Loading trace points... [0.079s] Sorting trace points... [0.977s] Computing alignments... [45.958s] Deallocating buffers... [0.018s] Loading trace points... [0.065s] Sorting trace points... [1.096s] Computing alignments... [45.339s] Deallocating buffers... [0.027s] Loading trace points... [0.001s] Sorting trace points... [1.068s] Computing alignments... [46.551s] Deallocating buffers... [0.026s] Loading trace points... [0.107s] Sorting trace points... [1.348s] Computing alignments... [44.3s] Deallocating buffers... [0.025s] Loading trace points... [0.145s] Sorting trace points... [1.384s] Computing alignments... [43.318s] Deallocating buffers... [0.027s] Loading trace points... [0.061s] Sorting trace points... [1.146s] Computing alignments... [45.261s] Deallocating buffers... [0.028s] Loading trace points... [0.063s] Sorting trace points... [1.318s] Computing alignments... [45.831s] Deallocating buffers... [0.024s] Loading trace points... [0.192s] Sorting trace points... [1.275s] Computing alignments... [43.999s] Deallocating buffers... [0.024s] Loading trace points... [0.105s] Sorting trace points... [0.987s] Computing alignments... [43.449s] Deallocating buffers... [0.026s] Loading trace points... [0.072s] Sorting trace points... [1.226s] Computing alignments... [42.334s] Deallocating buffers... [0.023s] Loading trace points... [0.09s] Sorting trace points... [0.96s] Computing alignments... [45.644s] Deallocating buffers... [0.018s] Loading trace points... [0.068s] Sorting trace points... [1.266s] Computing alignments... [42.214s] Deallocating buffers... [0.016s] Loading trace points... [0.066s] Sorting trace points... [1.238s] Computing alignments... [41.474s] Deallocating buffers... [0.023s] Loading trace points... [0.07s] Sorting trace points... [1.197s] Computing alignments... [39.968s] Deallocating buffers... [0.025s] Loading trace points... [0s] Sorting trace points... [1.277s] Computing alignments... [43.955s] Deallocating buffers... [0.024s] Loading trace points... [0s] [735.033s] Deallocating reference... [0.083s] Loading reference sequences... [34.518s] Masking reference... [31.099s] Initializing dictionary... [0.077s] Initializing temporary storage... [0.006s] Building reference histograms... [32.484s] Allocating buffers... [0.001s] Processing query block 1, reference block 9/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.52s] Building query seed array... [1.211s] Computing hash join... [4.619s] Masking low complexity seeds... [0.165s] Searching alignments... [96.647s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.706s] Building query seed array... [1.432s] Computing hash join... [4.69s] Masking low complexity seeds... [0.169s] Searching alignments... [69.163s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.879s] Building query seed array... [1.578s] Computing hash join... [4.687s] Masking low complexity seeds... [0.173s] Searching alignments... [91.724s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.461s] Building query seed array... [1.201s] Computing hash join... [4.64s] Masking low complexity seeds... [0.162s] Searching alignments... [47.724s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.211s] Building query seed array... [1.125s] Computing hash join... [4.597s] Masking low complexity seeds... [0.165s] Searching alignments... [80.989s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.296s] Building query seed array... [1.306s] Computing hash join... [4.595s] Masking low complexity seeds... [0.159s] Searching alignments... [45.665s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.214s] Building query seed array... [1.299s] Computing hash join... [4.64s] Masking low complexity seeds... [0.161s] Searching alignments... [38.718s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.343s] Building query seed array... [1.096s] Computing hash join... [4.599s] Masking low complexity seeds... [0.162s] Searching alignments... [33.043s] Deallocating memory... [0s] Deallocating buffers... [0.142s] Clearing query masking... [0.708s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [7.653s] Sorting trace points... [1.466s] Computing alignments... [44.531s] Deallocating buffers... [0.016s] Loading trace points... [0.065s] Sorting trace points... [1.358s] Computing alignments... [45.488s] Deallocating buffers... [0.024s] Loading trace points... [0.07s] Sorting trace points... [1.35s] Computing alignments... [45.316s] Deallocating buffers... [0.028s] Loading trace points... [0.946s] Sorting trace points... [1.179s] Computing alignments... [45.731s] Deallocating buffers... [0.028s] Loading trace points... [0.078s] Sorting trace points... [1.374s] Computing alignments... [43.782s] Deallocating buffers... [0.025s] Loading trace points... [0.141s] Sorting trace points... [1.007s] Computing alignments... [42.835s] Deallocating buffers... [0.026s] Loading trace points... [0.098s] Sorting trace points... [1.17s] Computing alignments... [43.901s] Deallocating buffers... [0.018s] Loading trace points... [0.099s] Sorting trace points... [1.344s] Computing alignments... [45.149s] Deallocating buffers... [0.025s] Loading trace points... [0.167s] Sorting trace points... [1.318s] Computing alignments... [43.262s] Deallocating buffers... [0.024s] Loading trace points... [0.114s] Sorting trace points... [1.216s] Computing alignments... [42.858s] Deallocating buffers... [0.025s] Loading trace points... [0.076s] Sorting trace points... [0.974s] Computing alignments... [41.527s] Deallocating buffers... [0.025s] Loading trace points... [0s] Sorting trace points... [1.297s] Computing alignments... [44.878s] Deallocating buffers... [0.03s] Loading trace points... [0.086s] Sorting trace points... [1.221s] Computing alignments... [41.884s] Deallocating buffers... [0.026s] Loading trace points... [0.001s] Sorting trace points... [1.284s] Computing alignments... [41.16s] Deallocating buffers... [0.027s] Loading trace points... [0.071s] Sorting trace points... [0.904s] Computing alignments... [39.485s] Deallocating buffers... [0.016s] Loading trace points... [0s] Sorting trace points... [0.988s] Computing alignments... [42.925s] Deallocating buffers... [0.017s] Loading trace points... [0s] [724.32s] Deallocating reference... [0.058s] Loading reference sequences... [29.289s] Masking reference... [30.907s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.006s] Building reference histograms... [33.11s] Allocating buffers... [0s] Processing query block 1, reference block 10/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.39s] Building query seed array... [1.201s] Computing hash join... [4.652s] Masking low complexity seeds... [0.16s] Searching alignments... [98.367s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.58s] Building query seed array... [1.418s] Computing hash join... [4.696s] Masking low complexity seeds... [0.164s] Searching alignments... [66.529s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.319s] Building query seed array... [1.505s] Computing hash join... [4.649s] Masking low complexity seeds... [0.158s] Searching alignments... [92.181s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.283s] Building query seed array... [1.175s] Computing hash join... [4.707s] Masking low complexity seeds... [0.164s] Searching alignments... [49.709s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 2/2, index chunk 1/4. Building reference seed array... [9.986s] Building query seed array... [1.06s] Computing hash join... [4.555s] Masking low complexity seeds... [0.159s] Searching alignments... [77.776s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.199s] Building query seed array... [1.236s] Computing hash join... [4.616s] Masking low complexity seeds... [0.162s] Searching alignments... [45.229s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.651s] Building query seed array... [1.343s] Computing hash join... [4.558s] Masking low complexity seeds... [0.156s] Searching alignments... [38.273s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.322s] Building query seed array... [1.127s] Computing hash join... [4.636s] Masking low complexity seeds... [0.167s] Searching alignments... [34.61s] Deallocating memory... [0s] Deallocating buffers... [0.141s] Clearing query masking... [0.673s] Opening temporary output file... [0.002s] Computing alignments... Loading trace points... [7.72s] Sorting trace points... [1.44s] Computing alignments... [45.799s] Deallocating buffers... [0.028s] Loading trace points... [0.109s] Sorting trace points... [1.395s] Computing alignments... [46.733s] Deallocating buffers... [0.017s] Loading trace points... [0.066s] Sorting trace points... [1.181s] Computing alignments... [46.888s] Deallocating buffers... [0.029s] Loading trace points... [0.056s] Sorting trace points... [1.156s] Computing alignments... [47.874s] Deallocating buffers... [0.029s] Loading trace points... [0.081s] Sorting trace points... [1.272s] Computing alignments... [45.364s] Deallocating buffers... [0.028s] Loading trace points... [0.117s] Sorting trace points... [1.036s] Computing alignments... [44.272s] Deallocating buffers... [0.026s] Loading trace points... [0.175s] Sorting trace points... [1.131s] Computing alignments... [45.708s] Deallocating buffers... [0.02s] Loading trace points... [0.084s] Sorting trace points... [1.181s] Computing alignments... [47.293s] Deallocating buffers... [0.026s] Loading trace points... [0.196s] Sorting trace points... [1.118s] Computing alignments... [45.025s] Deallocating buffers... [0.018s] Loading trace points... [0.094s] Sorting trace points... [1.152s] Computing alignments... [44.774s] Deallocating buffers... [0.028s] Loading trace points... [0.088s] Sorting trace points... [1.049s] Computing alignments... [42.92s] Deallocating buffers... [0.026s] Loading trace points... [0.114s] Sorting trace points... [1.125s] Computing alignments... [46.312s] Deallocating buffers... [0.034s] Loading trace points... [0.264s] Sorting trace points... [1.001s] Computing alignments... [43.362s] Deallocating buffers... [0.028s] Loading trace points... [0.07s] Sorting trace points... [1.329s] Computing alignments... [41.925s] Deallocating buffers... [0.03s] Loading trace points... [0.07s] Sorting trace points... [1.21s] Computing alignments... [40.924s] Deallocating buffers... [0.026s] Loading trace points... [0s] Sorting trace points... [1.106s] Computing alignments... [44.885s] Deallocating buffers... [0.025s] Loading trace points... [0s] [748.708s] Deallocating reference... [0.093s] Loading reference sequences... [30.719s] Masking reference... [32.163s] Initializing dictionary... [0.077s] Initializing temporary storage... [0.006s] Building reference histograms... [32.034s] Allocating buffers... [0s] Processing query block 1, reference block 11/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.282s] Building query seed array... [1.193s] Computing hash join... [4.647s] Masking low complexity seeds... [0.167s] Searching alignments... [96.113s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.702s] Building query seed array... [1.382s] Computing hash join... [4.72s] Masking low complexity seeds... [0.165s] Searching alignments... [66.206s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.563s] Building query seed array... [1.498s] Computing hash join... [4.672s] Masking low complexity seeds... [0.165s] Searching alignments... [91.857s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 1/2, index chunk 4/4. Building reference seed array... [9.842s] Building query seed array... [1.145s] Computing hash join... [4.662s] Masking low complexity seeds... [0.174s] Searching alignments... [47.858s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.494s] Building query seed array... [1.123s] Computing hash join... [4.683s] Masking low complexity seeds... [0.163s] Searching alignments... [78.567s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.439s] Building query seed array... [1.298s] Computing hash join... [4.491s] Masking low complexity seeds... [0.158s] Searching alignments... [44.62s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.299s] Building query seed array... [1.369s] Computing hash join... [4.557s] Masking low complexity seeds... [0.161s] Searching alignments... [39.187s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 2/2, index chunk 4/4. Building reference seed array... [9.924s] Building query seed array... [1.085s] Computing hash join... [4.517s] Masking low complexity seeds... [0.164s] Searching alignments... [34.5s] Deallocating memory... [0s] Deallocating buffers... [0.144s] Clearing query masking... [0.697s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [7.895s] Sorting trace points... [1.447s] Computing alignments... [46.246s] Deallocating buffers... [0.025s] Loading trace points... [0.135s] Sorting trace points... [1.361s] Computing alignments... [47.348s] Deallocating buffers... [0.024s] Loading trace points... [0.064s] Sorting trace points... [1.029s] Computing alignments... [47.552s] Deallocating buffers... [0.026s] Loading trace points... [0.067s] Sorting trace points... [1.105s] Computing alignments... [47.791s] Deallocating buffers... [0.027s] Loading trace points... [0.074s] Sorting trace points... [1.035s] Computing alignments... [45.69s] Deallocating buffers... [0.027s] Loading trace points... [0.094s] Sorting trace points... [1.084s] Computing alignments... [45.011s] Deallocating buffers... [0.026s] Loading trace points... [0.082s] Sorting trace points... [1.321s] Computing alignments... [46.574s] Deallocating buffers... [0.025s] Loading trace points... [0.049s] Sorting trace points... [1.183s] Computing alignments... [47.43s] Deallocating buffers... [0.025s] Loading trace points... [0.077s] Sorting trace points... [1.175s] Computing alignments... [45.851s] Deallocating buffers... [0.025s] Loading trace points... [0.091s] Sorting trace points... [1.112s] Computing alignments... [45.163s] Deallocating buffers... [0.031s] Loading trace points... [0.064s] Sorting trace points... [1.225s] Computing alignments... [43.708s] Deallocating buffers... [0.022s] Loading trace points... [0.078s] Sorting trace points... [0.986s] Computing alignments... [46.937s] Deallocating buffers... [0.026s] Loading trace points... [0.098s] Sorting trace points... [1.187s] Computing alignments... [43.851s] Deallocating buffers... [0.025s] Loading trace points... [0.085s] Sorting trace points... [1.077s] Computing alignments... [42.678s] Deallocating buffers... [0.028s] Loading trace points... [0.108s] Sorting trace points... [0.939s] Computing alignments... [41.645s] Deallocating buffers... [0.024s] Loading trace points... [0s] Sorting trace points... [1.216s] Computing alignments... [45.123s] Deallocating buffers... [0.026s] Loading trace points... [0s] [756.609s] Deallocating reference... [0.083s] Loading reference sequences... [339.044s] Masking reference... [31.125s] Initializing dictionary... [0.077s] Initializing temporary storage... [0.006s] Building reference histograms... [32.793s] Allocating buffers... [0s] Processing query block 1, reference block 12/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.371s] Building query seed array... [1.175s] Computing hash join... [4.716s] Masking low complexity seeds... [0.168s] Searching alignments... [95.774s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.588s] Building query seed array... [1.45s] Computing hash join... [4.724s] Masking low complexity seeds... [0.178s] Searching alignments... [68.916s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.797s] Building query seed array... [1.492s] Computing hash join... [4.75s] Masking low complexity seeds... [0.175s] Searching alignments... [90.858s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.107s] Building query seed array... [1.146s] Computing hash join... [4.655s] Masking low complexity seeds... [0.165s] Searching alignments... [47.958s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.286s] Building query seed array... [1.142s] Computing hash join... [4.559s] Masking low complexity seeds... [0.159s] Searching alignments... [80.206s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.466s] Building query seed array... [1.274s] Computing hash join... [4.589s] Masking low complexity seeds... [0.159s] Searching alignments... [45.168s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.101s] Building query seed array... [1.322s] Computing hash join... [4.646s] Masking low complexity seeds... [0.166s] Searching alignments... [38.868s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.012s] Building query seed array... [1.079s] Computing hash join... [4.671s] Masking low complexity seeds... [0.164s] Searching alignments... [33.089s] Deallocating memory... [0s] Deallocating buffers... [0.141s] Clearing query masking... [0.661s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [8.38s] Sorting trace points... [1.438s] Computing alignments... [44.75s] Deallocating buffers... [0.025s] Loading trace points... [0.001s] Sorting trace points... [1.379s] Computing alignments... [45.929s] Deallocating buffers... [0.028s] Loading trace points... [0.094s] Sorting trace points... [1.018s] Computing alignments... [45.488s] Deallocating buffers... [0.026s] Loading trace points... [0.071s] Sorting trace points... [1.286s] Computing alignments... [46.31s] Deallocating buffers... [0.025s] Loading trace points... [0.826s] Sorting trace points... [1.365s] Computing alignments... [44.384s] Deallocating buffers... [0.021s] Loading trace points... [0.055s] Sorting trace points... [1.331s] Computing alignments... [43.388s] Deallocating buffers... [0.028s] Loading trace points... [0.08s] Sorting trace points... [1.387s] Computing alignments... [44.97s] Deallocating buffers... [0.031s] Loading trace points... [0.07s] Sorting trace points... [1.182s] Computing alignments... [45.516s] Deallocating buffers... [0.026s] Loading trace points... [0.046s] Sorting trace points... [1.313s] Computing alignments... [44.255s] Deallocating buffers... [0.024s] Loading trace points... [0.09s] Sorting trace points... [1.325s] Computing alignments... [43.698s] Deallocating buffers... [0.02s] Loading trace points... [0.065s] Sorting trace points... [1.041s] Computing alignments... [42.113s] Deallocating buffers... [0.031s] Loading trace points... [0.148s] Sorting trace points... [1.23s] Computing alignments... [45.436s] Deallocating buffers... [0.025s] Loading trace points... [0.098s] Sorting trace points... [1.086s] Computing alignments... [42.729s] Deallocating buffers... [0.023s] Loading trace points... [0.094s] Sorting trace points... [1.321s] Computing alignments... [41.613s] Deallocating buffers... [0.024s] Loading trace points... [0.001s] Sorting trace points... [1.234s] Computing alignments... [40.172s] Deallocating buffers... [0.019s] Loading trace points... [0s] Sorting trace points... [1.279s] Computing alignments... [43.887s] Deallocating buffers... [0.027s] Loading trace points... [0s] [735.574s] Deallocating reference... [0.083s] Loading reference sequences... [32.79s] Masking reference... [31.901s] Initializing dictionary... [0.079s] Initializing temporary storage... [0.007s] Building reference histograms... [31.951s] Allocating buffers... [0s] Processing query block 1, reference block 13/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.246s] Building query seed array... [1.224s] Computing hash join... [4.747s] Masking low complexity seeds... [0.163s] Searching alignments... [96.993s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.722s] Building query seed array... [1.416s] Computing hash join... [4.659s] Masking low complexity seeds... [0.159s] Searching alignments... [67.379s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.053s] Building query seed array... [1.473s] Computing hash join... [4.662s] Masking low complexity seeds... [0.166s] Searching alignments... [91.462s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 1/2, index chunk 4/4. Building reference seed array... [9.792s] Building query seed array... [1.131s] Computing hash join... [4.715s] Masking low complexity seeds... [0.162s] Searching alignments... [48.799s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.502s] Building query seed array... [1.108s] Computing hash join... [4.663s] Masking low complexity seeds... [0.162s] Searching alignments... [78.563s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.313s] Building query seed array... [1.294s] Computing hash join... [4.569s] Masking low complexity seeds... [0.155s] Searching alignments... [44.219s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.483s] Building query seed array... [1.326s] Computing hash join... [4.649s] Masking low complexity seeds... [0.164s] Searching alignments... [38.102s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.137s] Building query seed array... [1.095s] Computing hash join... [4.573s] Masking low complexity seeds... [0.155s] Searching alignments... [33.653s] Deallocating memory... [0s] Deallocating buffers... [0.156s] Clearing query masking... [0.698s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [7.7s] Sorting trace points... [1.423s] Computing alignments... [46.535s] Deallocating buffers... [0.029s] Loading trace points... [0.169s] Sorting trace points... [1.202s] Computing alignments... [47.702s] Deallocating buffers... [0.025s] Loading trace points... [0.16s] Sorting trace points... [1.015s] Computing alignments... [47.397s] Deallocating buffers... [0.034s] Loading trace points... [0.111s] Sorting trace points... [1.357s] Computing alignments... [48.277s] Deallocating buffers... [0.025s] Loading trace points... [0.075s] Sorting trace points... [1.323s] Computing alignments... [46.078s] Deallocating buffers... [0.029s] Loading trace points... [0.089s] Sorting trace points... [1.132s] Computing alignments... [45.008s] Deallocating buffers... [0.027s] Loading trace points... [0.063s] Sorting trace points... [1.006s] Computing alignments... [46.51s] Deallocating buffers... [0.019s] Loading trace points... [0.843s] Sorting trace points... [1.06s] Computing alignments... [47.682s] Deallocating buffers... [0.026s] Loading trace points... [0.073s] Sorting trace points... [1.152s] Computing alignments... [45.978s] Deallocating buffers... [0.025s] Loading trace points... [0.089s] Sorting trace points... [1.095s] Computing alignments... [45.261s] Deallocating buffers... [0.026s] Loading trace points... [0.074s] Sorting trace points... [1.028s] Computing alignments... [43.875s] Deallocating buffers... [0.017s] Loading trace points... [0.056s] Sorting trace points... [1.013s] Computing alignments... [47.383s] Deallocating buffers... [0.026s] Loading trace points... [0.106s] Sorting trace points... [0.972s] Computing alignments... [44.32s] Deallocating buffers... [0.03s] Loading trace points... [0.066s] Sorting trace points... [1.177s] Computing alignments... [42.99s] Deallocating buffers... [0.02s] Loading trace points... [0.069s] Sorting trace points... [0.966s] Computing alignments... [41.408s] Deallocating buffers... [0.025s] Loading trace points... [0s] Sorting trace points... [1.092s] Computing alignments... [45.579s] Deallocating buffers... [0.025s] Loading trace points... [0s] [760.196s] Deallocating reference... [0.088s] Loading reference sequences... [24.806s] Masking reference... [25.21s] Initializing dictionary... [0.063s] Initializing temporary storage... [0.006s] Building reference histograms... [26.323s] Allocating buffers... [0s] Processing query block 1, reference block 14/14, shape 1/2, index chunk 1/4. Building reference seed array... [8.254s] Building query seed array... [1.212s] Computing hash join... [3.927s] Masking low complexity seeds... [0.157s] Searching alignments... [78.637s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 1/2, index chunk 2/4. Building reference seed array... [10.367s] Building query seed array... [1.424s] Computing hash join... [3.846s] Masking low complexity seeds... [0.155s] Searching alignments... [54.717s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 1/2, index chunk 3/4. Building reference seed array... [10.963s] Building query seed array... [1.41s] Computing hash join... [3.902s] Masking low complexity seeds... [0.154s] Searching alignments... [73.571s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 1/2, index chunk 4/4. Building reference seed array... [7.967s] Building query seed array... [1.127s] Computing hash join... [3.858s] Masking low complexity seeds... [0.155s] Searching alignments... [38.106s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 2/2, index chunk 1/4. Building reference seed array... [8.516s] Building query seed array... [1.126s] Computing hash join... [3.769s] Masking low complexity seeds... [0.148s] Searching alignments... [65.061s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 2/2, index chunk 2/4. Building reference seed array... [10.021s] Building query seed array... [1.298s] Computing hash join... [3.704s] Masking low complexity seeds... [0.159s] Searching alignments... [36.065s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 2/2, index chunk 3/4. Building reference seed array... [11.074s] Building query seed array... [1.34s] Computing hash join... [3.821s] Masking low complexity seeds... [0.151s] Searching alignments... [32.226s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 2/2, index chunk 4/4. Building reference seed array... [8.281s] Building query seed array... [1.127s] Computing hash join... [3.745s] Masking low complexity seeds... [0.149s] Searching alignments... [27.288s] Deallocating memory... [0s] Deallocating buffers... [0.118s] Clearing query masking... [0.714s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [6.447s] Sorting trace points... [1.162s] Computing alignments... [35.087s] Deallocating buffers... [0.021s] Loading trace points... [0.066s] Sorting trace points... [1.13s] Computing alignments... [35.603s] Deallocating buffers... [0.02s] Loading trace points... [0.048s] Sorting trace points... [0.876s] Computing alignments... [35.419s] Deallocating buffers... [0.022s] Loading trace points... [0.063s] Sorting trace points... [1.126s] Computing alignments... [35.97s] Deallocating buffers... [0.023s] Loading trace points... [0.079s] Sorting trace points... [0.841s] Computing alignments... [34.186s] Deallocating buffers... [0.021s] Loading trace points... [0.074s] Sorting trace points... [0.885s] Computing alignments... [33.803s] Deallocating buffers... [0.021s] Loading trace points... [0.099s] Sorting trace points... [0.893s] Computing alignments... [34.6s] Deallocating buffers... [0.021s] Loading trace points... [0.097s] Sorting trace points... [1.032s] Computing alignments... [35.286s] Deallocating buffers... [0.021s] Loading trace points... [0s] Sorting trace points... [1.066s] Computing alignments... [34.117s] Deallocating buffers... [0.019s] Loading trace points... [0.096s] Sorting trace points... [1.011s] Computing alignments... [33.697s] Deallocating buffers... [0.02s] Loading trace points... [0.076s] Sorting trace points... [0.954s] Computing alignments... [32.522s] Deallocating buffers... [0.021s] Loading trace points... [0.168s] Sorting trace points... [1.093s] Computing alignments... [35.348s] Deallocating buffers... [0.02s] Loading trace points... [0.138s] Sorting trace points... [1.985s] Computing alignments... [64.414s] Deallocating buffers... [0.037s] Loading trace points... [0s] Sorting trace points... [1.918s] Computing alignments... [64.149s] Deallocating buffers... [0.04s] Loading trace points... [0s] [568.076s] Deallocating reference... [0.069s] Loading reference sequences... [0.123s] Deallocating buffers... [0s] Joining output blocks... Joining output blocks... [3516.74s] [3516.79s] Deallocating queries... [0.032s] Loading query sequences... [0s] Closing the input file... [0s] Closing the output file... Loading dictionary... [2.412s] [3.185s] Closing the database... [0s] Cleaning up... [0s] Total time = 24896.7s Reported 3841648913 pairwise alignments, 3841648913 HSPs. 3198101 queries aligned. DIAMOND BLASTx on /gscratch/scrubbed/samwhite/data/P_helianthoides/RNAseq/PSC-0519_unmapped_reads.1.fastq complete: PSC-0519_unmapped_reads.1.blastx.meganized.daa Now MEGANizing PSC-0519_unmapped_reads.1.blastx.meganized.daa Version MEGAN Community Edition (version 6.22.0, built 19 Feb 2022) Author(s) Daniel H. Huson Copyright (C) 2022 Daniel H. Huson. This program comes with ABSOLUTELY NO WARRANTY. Java version: 17.0.2 Functional classifications to use: EC, EGGNOG, GTDB, INTERPRO2GO, SEED Loading ncbi.map: 2,396,736 Loading ncbi.tre: 2,396,740 Loading ec.map: 8,200 Loading ec.tre: 8,204 Loading eggnog.map: 30,875 Loading eggnog.tre: 30,986 Loading gtdb.map: 240,103 Loading gtdb.tre: 240,107 Loading interpro2go.map: 14,242 Loading interpro2go.tre: 28,907 Loading seed.map: 961 Loading seed.tre: 962 Meganizing: PSC-0519_unmapped_reads.1.blastx.meganized.daa Meganizing init Annotating DAA file using FAST mode (accession database and first accession per line) Annotating references 10% 20% 30% 40% 100% (158.1s) Writing 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (0.6s) Binning reads Initializing... Initializing binning... Using 'Naive LCA' algorithm for binning: Taxonomy Using Best-Hit algorithm for binning: SEED Using Best-Hit algorithm for binning: EGGNOG Using 'Naive LCA' algorithm for binning: GTDB Using Best-Hit algorithm for binning: EC Using Best-Hit algorithm for binning: INTERPRO2GO Binning reads... Binning reads Analyzing alignments 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (3,971.1s) Total reads: 3,198,101 With hits: 3,198,101 Alignments: 1,959,314,243 Assig. Taxonomy: 3,053,069 Assig. SEED: 92,771 Assig. EGGNOG: 9,050 Assig. GTDB: 225,581 Assig. EC: 349,523 Assig. INTERPRO2GO: 815,004 MinSupport set to: 1599 Binning reads Applying min-support & disabled filter to Taxonomy... 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (0.4s) Min-supp. changes: 2,085 Binning reads Applying min-support & disabled filter to GTDB... 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (2.0s) Min-supp. changes: 916 Binning reads Writing classification tables 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (4.6s) Binning reads Syncing 100% (0.3s) Class. Taxonomy: 127 Class. SEED: 220 Class. EGGNOG: 315 Class. GTDB: 34 Class. EC: 1,125 Class. INTERPRO2GO: 4,318 Total time: 4,145s Peak memory: 37.2 of 195.3G MEGANization of PSC-0519_unmapped_reads.1.blastx.meganized.daa completed. Generating MD5 checksum for /gscratch/scrubbed/samwhite/data/P_helianthoides/RNAseq/PSC-0519_unmapped_reads.2.fastq... 7ef238b6a0e0ef0eaec5873a17942f33 /gscratch/scrubbed/samwhite/data/P_helianthoides/RNAseq/PSC-0519_unmapped_reads.2.fastq Running DIAMOND BLASTx on /gscratch/scrubbed/samwhite/data/P_helianthoides/RNAseq/PSC-0519_unmapped_reads.2.fastq. diamond v2.1.1.155 (C) Max Planck Society for the Advancement of Science Documentation, support and updates available at http://www.diamondsearch.org Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021) #CPU threads: 40 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: Percentage range of top alignment score to report hits: 5 Opening the database... [0.331s] Database: /gscratch/srlab/blastdbs/20230215-ncbi-nr/20230215-ncbi-nr.dmnd (type: Diamond database, sequences: 526308523, letters: 207134680681) Block size = 15000000000 Opening the input file... [0.6s] Opening the output file... [0s] Loading query sequences... [26.682s] Masking queries... [10.068s] Algorithm: Double-indexed Building query histograms... [8.071s] Loading reference sequences... [33.829s] Masking reference... [30.879s] Initializing dictionary... [0.077s] Initializing temporary storage... [0.008s] Building reference histograms... [33.361s] Allocating buffers... [0.001s] Processing query block 1, reference block 1/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.467s] Building query seed array... [1.174s] Computing hash join... [4.814s] Masking low complexity seeds... [0.176s] Searching alignments... [97.66s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.457s] Building query seed array... [1.388s] Computing hash join... [4.779s] Masking low complexity seeds... [0.184s] Searching alignments... [67.16s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 1/2, index chunk 3/4. Building reference seed array... [14.006s] Building query seed array... [1.445s] Computing hash join... [4.721s] Masking low complexity seeds... [0.175s] Searching alignments... [87.486s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.212s] Building query seed array... [1.254s] Computing hash join... [4.763s] Masking low complexity seeds... [0.176s] Searching alignments... [49.559s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.308s] Building query seed array... [1.121s] Computing hash join... [4.577s] Masking low complexity seeds... [0.171s] Searching alignments... [78.429s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.324s] Building query seed array... [1.227s] Computing hash join... [4.672s] Masking low complexity seeds... [0.177s] Searching alignments... [43.174s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 2/2, index chunk 3/4. Building reference seed array... [12.836s] Building query seed array... [1.272s] Computing hash join... [4.579s] Masking low complexity seeds... [0.178s] Searching alignments... [38.564s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.013s] Building query seed array... [1.089s] Computing hash join... [4.704s] Masking low complexity seeds... [0.182s] Searching alignments... [35.312s] Deallocating memory... [0s] Deallocating buffers... [0.16s] Clearing query masking... [0.727s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [7.846s] Sorting trace points... [1.402s] Computing alignments... [48.1s] Deallocating buffers... [0.039s] Loading trace points... [0.19s] Sorting trace points... [0.974s] Computing alignments... [45.355s] Deallocating buffers... [0.032s] Loading trace points... [0.063s] Sorting trace points... [1.312s] Computing alignments... [46.186s] Deallocating buffers... [0.017s] Loading trace points... [0.788s] Sorting trace points... [1.374s] Computing alignments... [47.318s] Deallocating buffers... [0.03s] Loading trace points... [0.033s] Sorting trace points... [1.097s] Computing alignments... [45.07s] Deallocating buffers... [0.025s] Loading trace points... [0.095s] Sorting trace points... [1.267s] Computing alignments... [44.014s] Deallocating buffers... [0.031s] Loading trace points... [0.078s] Sorting trace points... [1.341s] Computing alignments... [47.632s] Deallocating buffers... [0.03s] Loading trace points... [0.002s] Sorting trace points... [1.06s] Computing alignments... [45.724s] Deallocating buffers... [0.028s] Loading trace points... [0.087s] Sorting trace points... [1.283s] Computing alignments... [44.343s] Deallocating buffers... [0.029s] Loading trace points... [0.105s] Sorting trace points... [0.98s] Computing alignments... [42.452s] Deallocating buffers... [0.03s] Loading trace points... [0.064s] Sorting trace points... [1.231s] Computing alignments... [41.274s] Deallocating buffers... [0.019s] Loading trace points... [0.076s] Sorting trace points... [1.311s] Computing alignments... [43.678s] Deallocating buffers... [0.026s] Loading trace points... [0.128s] Sorting trace points... [1.107s] Computing alignments... [39.628s] Deallocating buffers... [0.03s] Loading trace points... [0.085s] Sorting trace points... [1.062s] Computing alignments... [42.842s] Deallocating buffers... [0.035s] Loading trace points... [0.095s] Sorting trace points... [1.187s] Computing alignments... [41.743s] Deallocating buffers... [0.015s] Loading trace points... [0s] Sorting trace points... [1.256s] Computing alignments... [41.248s] Deallocating buffers... [0.023s] Loading trace points... [0s] [736.153s] Deallocating reference... [0.085s] Loading reference sequences... [31.478s] Masking reference... [32.26s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.008s] Building reference histograms... [31.564s] Allocating buffers... [0.001s] Processing query block 1, reference block 2/14, shape 1/2, index chunk 1/4. Building reference seed array... [9.87s] Building query seed array... [1.141s] Computing hash join... [4.724s] Masking low complexity seeds... [0.176s] Searching alignments... [98.357s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.873s] Building query seed array... [1.349s] Computing hash join... [4.722s] Masking low complexity seeds... [0.175s] Searching alignments... [69.871s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.703s] Building query seed array... [1.454s] Computing hash join... [4.734s] Masking low complexity seeds... [0.177s] Searching alignments... [86.889s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.15s] Building query seed array... [1.177s] Computing hash join... [4.758s] Masking low complexity seeds... [0.175s] Searching alignments... [50.402s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.387s] Building query seed array... [1.131s] Computing hash join... [4.663s] Masking low complexity seeds... [0.174s] Searching alignments... [78.397s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.72s] Building query seed array... [1.263s] Computing hash join... [4.688s] Masking low complexity seeds... [0.173s] Searching alignments... [45.18s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.357s] Building query seed array... [1.312s] Computing hash join... [4.647s] Masking low complexity seeds... [0.17s] Searching alignments... [36.759s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 2/2, index chunk 4/4. Building reference seed array... [9.885s] Building query seed array... [1.106s] Computing hash join... [4.622s] Masking low complexity seeds... [0.173s] Searching alignments... [31.965s] Deallocating memory... [0s] Deallocating buffers... [0.161s] Clearing query masking... [0.686s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [8.061s] Sorting trace points... [1.328s] Computing alignments... [46.014s] Deallocating buffers... [0.026s] Loading trace points... [0.054s] Sorting trace points... [1.358s] Computing alignments... [44.547s] Deallocating buffers... [0.028s] Loading trace points... [0.107s] Sorting trace points... [1.299s] Computing alignments... [45.09s] Deallocating buffers... [0.028s] Loading trace points... [0.067s] Sorting trace points... [0.993s] Computing alignments... [46.079s] Deallocating buffers... [0.026s] Loading trace points... [0.087s] Sorting trace points... [1.339s] Computing alignments... [43.928s] Deallocating buffers... [0.017s] Loading trace points... [0.076s] Sorting trace points... [1.033s] Computing alignments... [43.397s] Deallocating buffers... [0.031s] Loading trace points... [0.07s] Sorting trace points... [1.083s] Computing alignments... [46.409s] Deallocating buffers... [0.025s] Loading trace points... [0.076s] Sorting trace points... [0.969s] Computing alignments... [44.561s] Deallocating buffers... [0.027s] Loading trace points... [0.051s] Sorting trace points... [0.962s] Computing alignments... [43.62s] Deallocating buffers... [0.031s] Loading trace points... [0.071s] Sorting trace points... [1.268s] Computing alignments... [41.584s] Deallocating buffers... [0.027s] Loading trace points... [0.069s] Sorting trace points... [0.926s] Computing alignments... [40.967s] Deallocating buffers... [0.026s] Loading trace points... [0.087s] Sorting trace points... [1.313s] Computing alignments... [43.3s] Deallocating buffers... [0.023s] Loading trace points... [0.063s] Sorting trace points... [1.231s] Computing alignments... [39.261s] Deallocating buffers... [0.022s] Loading trace points... [0.069s] Sorting trace points... [1.276s] Computing alignments... [42.584s] Deallocating buffers... [0.031s] Loading trace points... [0.103s] Sorting trace points... [1.19s] Computing alignments... [40.955s] Deallocating buffers... [0.015s] Loading trace points... [0s] Sorting trace points... [1.2s] Computing alignments... [40.419s] Deallocating buffers... [0.026s] Loading trace points... [0s] [721.124s] Deallocating reference... [0.081s] Loading reference sequences... [30.577s] Masking reference... [31.009s] Initializing dictionary... [0.077s] Initializing temporary storage... [0.008s] Building reference histograms... [32.681s] Allocating buffers... [0.001s] Processing query block 1, reference block 3/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.247s] Building query seed array... [1.153s] Computing hash join... [4.797s] Masking low complexity seeds... [0.184s] Searching alignments... [95.984s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.425s] Building query seed array... [1.368s] Computing hash join... [4.738s] Masking low complexity seeds... [0.182s] Searching alignments... [68.01s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.547s] Building query seed array... [1.498s] Computing hash join... [4.706s] Masking low complexity seeds... [0.173s] Searching alignments... [89.215s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.196s] Building query seed array... [1.152s] Computing hash join... [4.721s] Masking low complexity seeds... [0.175s] Searching alignments... [46.958s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.226s] Building query seed array... [1.116s] Computing hash join... [4.587s] Masking low complexity seeds... [0.175s] Searching alignments... [79.226s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.35s] Building query seed array... [1.278s] Computing hash join... [4.646s] Masking low complexity seeds... [0.176s] Searching alignments... [45.262s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.777s] Building query seed array... [1.401s] Computing hash join... [4.63s] Masking low complexity seeds... [0.178s] Searching alignments... [37.125s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.448s] Building query seed array... [1.121s] Computing hash join... [4.704s] Masking low complexity seeds... [0.179s] Searching alignments... [33.627s] Deallocating memory... [0s] Deallocating buffers... [0.139s] Clearing query masking... [0.663s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [8.964s] Sorting trace points... [1.389s] Computing alignments... [46.639s] Deallocating buffers... [0.02s] Loading trace points... [0.077s] Sorting trace points... [1.094s] Computing alignments... [45.308s] Deallocating buffers... [0.028s] Loading trace points... [0.442s] Sorting trace points... [1.3s] Computing alignments... [45.824s] Deallocating buffers... [0.028s] Loading trace points... [0.076s] Sorting trace points... [1.308s] Computing alignments... [46.629s] Deallocating buffers... [0.024s] Loading trace points... [0.076s] Sorting trace points... [1.016s] Computing alignments... [44.739s] Deallocating buffers... [0.026s] Loading trace points... [0.084s] Sorting trace points... [0.944s] Computing alignments... [44.721s] Deallocating buffers... [0.025s] Loading trace points... [0.068s] Sorting trace points... [1.201s] Computing alignments... [46.912s] Deallocating buffers... [0.028s] Loading trace points... [0.052s] Sorting trace points... [1.362s] Computing alignments... [45.304s] Deallocating buffers... [0.02s] Loading trace points... [0.062s] Sorting trace points... [1.14s] Computing alignments... [43.895s] Deallocating buffers... [0.025s] Loading trace points... [0.095s] Sorting trace points... [1.106s] Computing alignments... [41.818s] Deallocating buffers... [0.024s] Loading trace points... [0.124s] Sorting trace points... [1.072s] Computing alignments... [41.492s] Deallocating buffers... [0.023s] Loading trace points... [0.074s] Sorting trace points... [1.253s] Computing alignments... [43.6s] Deallocating buffers... [0.033s] Loading trace points... [0.046s] Sorting trace points... [1.223s] Computing alignments... [39.406s] Deallocating buffers... [0.022s] Loading trace points... [0.096s] Sorting trace points... [1.18s] Computing alignments... [43.029s] Deallocating buffers... [0.025s] Loading trace points... [0.11s] Sorting trace points... [1.153s] Computing alignments... [40.958s] Deallocating buffers... [0.025s] Loading trace points... [0s] Sorting trace points... [0.908s] Computing alignments... [40.655s] Deallocating buffers... [0.024s] Loading trace points... [0s] [730.559s] Deallocating reference... [0.092s] Loading reference sequences... [29.19s] Masking reference... [30.961s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.008s] Building reference histograms... [32.521s] Allocating buffers... [0.001s] Processing query block 1, reference block 4/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.435s] Building query seed array... [1.223s] Computing hash join... [4.706s] Masking low complexity seeds... [0.169s] Searching alignments... [95.773s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.344s] Building query seed array... [1.376s] Computing hash join... [4.788s] Masking low complexity seeds... [0.178s] Searching alignments... [66.529s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.615s] Building query seed array... [1.464s] Computing hash join... [4.821s] Masking low complexity seeds... [0.174s] Searching alignments... [89.973s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.141s] Building query seed array... [1.158s] Computing hash join... [4.795s] Masking low complexity seeds... [0.183s] Searching alignments... [48.79s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 2/2, index chunk 1/4. Building reference seed array... [9.861s] Building query seed array... [1.065s] Computing hash join... [4.669s] Masking low complexity seeds... [0.177s] Searching alignments... [78.122s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.223s] Building query seed array... [1.235s] Computing hash join... [4.638s] Masking low complexity seeds... [0.182s] Searching alignments... [43.202s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.5s] Building query seed array... [1.393s] Computing hash join... [4.602s] Masking low complexity seeds... [0.181s] Searching alignments... [38.662s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.466s] Building query seed array... [1.09s] Computing hash join... [4.629s] Masking low complexity seeds... [0.173s] Searching alignments... [32.916s] Deallocating memory... [0s] Deallocating buffers... [0.144s] Clearing query masking... [0.664s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [7.701s] Sorting trace points... [1.446s] Computing alignments... [47.222s] Deallocating buffers... [0.027s] Loading trace points... [0.098s] Sorting trace points... [1.302s] Computing alignments... [45.754s] Deallocating buffers... [0.031s] Loading trace points... [0.002s] Sorting trace points... [1.317s] Computing alignments... [45.61s] Deallocating buffers... [0.025s] Loading trace points... [0.111s] Sorting trace points... [1.345s] Computing alignments... [47.012s] Deallocating buffers... [0.024s] Loading trace points... [0.071s] Sorting trace points... [1.31s] Computing alignments... [45.034s] Deallocating buffers... [0.025s] Loading trace points... [0.108s] Sorting trace points... [1.238s] Computing alignments... [44.275s] Deallocating buffers... [0.032s] Loading trace points... [0.049s] Sorting trace points... [1.194s] Computing alignments... [47.675s] Deallocating buffers... [0.026s] Loading trace points... [0.072s] Sorting trace points... [1.07s] Computing alignments... [45.47s] Deallocating buffers... [0.023s] Loading trace points... [0.065s] Sorting trace points... [1.281s] Computing alignments... [44.594s] Deallocating buffers... [0.02s] Loading trace points... [0s] Sorting trace points... [1.047s] Computing alignments... [42.397s] Deallocating buffers... [0.025s] Loading trace points... [0.065s] Sorting trace points... [1.073s] Computing alignments... [41.493s] Deallocating buffers... [0.023s] Loading trace points... [0.001s] Sorting trace points... [1.097s] Computing alignments... [43.817s] Deallocating buffers... [0.031s] Loading trace points... [0.65s] Sorting trace points... [1.248s] Computing alignments... [40.049s] Deallocating buffers... [0.029s] Loading trace points... [0.108s] Sorting trace points... [1.218s] Computing alignments... [42.725s] Deallocating buffers... [0.031s] Loading trace points... [0.258s] Sorting trace points... [1.194s] Computing alignments... [41.244s] Deallocating buffers... [0.015s] Loading trace points... [0s] Sorting trace points... [1.234s] Computing alignments... [41.004s] Deallocating buffers... [0.023s] Loading trace points... [0s] [734.868s] Deallocating reference... [0.076s] Loading reference sequences... [31.723s] Masking reference... [31.486s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.008s] Building reference histograms... [33.118s] Allocating buffers... [0s] Processing query block 1, reference block 5/14, shape 1/2, index chunk 1/4. Building reference seed array... [9.905s] Building query seed array... [1.169s] Computing hash join... [4.772s] Masking low complexity seeds... [0.174s] Searching alignments... [94.566s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.553s] Building query seed array... [1.389s] Computing hash join... [4.734s] Masking low complexity seeds... [0.176s] Searching alignments... [67.989s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.347s] Building query seed array... [1.423s] Computing hash join... [4.692s] Masking low complexity seeds... [0.174s] Searching alignments... [87.904s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.084s] Building query seed array... [1.136s] Computing hash join... [4.747s] Masking low complexity seeds... [0.184s] Searching alignments... [49.161s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 2/2, index chunk 1/4. Building reference seed array... [9.979s] Building query seed array... [1.085s] Computing hash join... [4.654s] Masking low complexity seeds... [0.188s] Searching alignments... [78.365s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.907s] Building query seed array... [1.267s] Computing hash join... [4.693s] Masking low complexity seeds... [0.169s] Searching alignments... [43.353s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.15s] Building query seed array... [1.278s] Computing hash join... [4.697s] Masking low complexity seeds... [0.175s] Searching alignments... [36.986s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.017s] Building query seed array... [1.117s] Computing hash join... [4.583s] Masking low complexity seeds... [0.18s] Searching alignments... [33.136s] Deallocating memory... [0s] Deallocating buffers... [0.14s] Clearing query masking... [0.679s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [7.849s] Sorting trace points... [1.365s] Computing alignments... [46.631s] Deallocating buffers... [0.03s] Loading trace points... [0.064s] Sorting trace points... [1.316s] Computing alignments... [44.927s] Deallocating buffers... [0.024s] Loading trace points... [0.137s] Sorting trace points... [1.187s] Computing alignments... [45.707s] Deallocating buffers... [0.027s] Loading trace points... [0.094s] Sorting trace points... [1.009s] Computing alignments... [46.516s] Deallocating buffers... [0.027s] Loading trace points... [0.103s] Sorting trace points... [1.308s] Computing alignments... [44.388s] Deallocating buffers... [0.029s] Loading trace points... [0.063s] Sorting trace points... [1.279s] Computing alignments... [43.723s] Deallocating buffers... [0.016s] Loading trace points... [0.046s] Sorting trace points... [1.032s] Computing alignments... [47.387s] Deallocating buffers... [0.026s] Loading trace points... [0.003s] Sorting trace points... [1.283s] Computing alignments... [45.29s] Deallocating buffers... [0.025s] Loading trace points... [0.122s] Sorting trace points... [1.024s] Computing alignments... [43.97s] Deallocating buffers... [0.026s] Loading trace points... [0.129s] Sorting trace points... [1.257s] Computing alignments... [42.293s] Deallocating buffers... [0.025s] Loading trace points... [0.103s] Sorting trace points... [0.943s] Computing alignments... [41.297s] Deallocating buffers... [0.024s] Loading trace points... [0.088s] Sorting trace points... [1.281s] Computing alignments... [43.284s] Deallocating buffers... [0.02s] Loading trace points... [0.259s] Sorting trace points... [1.21s] Computing alignments... [39.781s] Deallocating buffers... [0.022s] Loading trace points... [0.727s] Sorting trace points... [1.129s] Computing alignments... [42.835s] Deallocating buffers... [0.024s] Loading trace points... [0.206s] Sorting trace points... [1.221s] Computing alignments... [40.973s] Deallocating buffers... [0.023s] Loading trace points... [0s] Sorting trace points... [0.93s] Computing alignments... [40.811s] Deallocating buffers... [0.025s] Loading trace points... [0s] [729.078s] Deallocating reference... [0.083s] Loading reference sequences... [38.366s] Masking reference... [32.125s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.008s] Building reference histograms... [32.222s] Allocating buffers... [0s] Processing query block 1, reference block 6/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.142s] Building query seed array... [1.182s] Computing hash join... [4.785s] Masking low complexity seeds... [0.175s] Searching alignments... [96.822s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.797s] Building query seed array... [1.43s] Computing hash join... [4.689s] Masking low complexity seeds... [0.176s] Searching alignments... [66.693s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.398s] Building query seed array... [1.415s] Computing hash join... [4.637s] Masking low complexity seeds... [0.171s] Searching alignments... [91.589s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.045s] Building query seed array... [1.186s] Computing hash join... [4.66s] Masking low complexity seeds... [0.183s] Searching alignments... [48.403s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.387s] Building query seed array... [1.102s] Computing hash join... [4.606s] Masking low complexity seeds... [0.172s] Searching alignments... [76.382s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.025s] Building query seed array... [1.223s] Computing hash join... [4.608s] Masking low complexity seeds... [0.172s] Searching alignments... [43.424s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.268s] Building query seed array... [1.325s] Computing hash join... [4.625s] Masking low complexity seeds... [0.167s] Searching alignments... [37.079s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.011s] Building query seed array... [1.113s] Computing hash join... [4.547s] Masking low complexity seeds... [0.165s] Searching alignments... [32.031s] Deallocating memory... [0s] Deallocating buffers... [0.158s] Clearing query masking... [0.681s] Opening temporary output file... [0.002s] Computing alignments... Loading trace points... [8.132s] Sorting trace points... [1.41s] Computing alignments... [44.826s] Deallocating buffers... [0.022s] Loading trace points... [0.06s] Sorting trace points... [1.347s] Computing alignments... [43.517s] Deallocating buffers... [0.031s] Loading trace points... [0.085s] Sorting trace points... [0.983s] Computing alignments... [43.785s] Deallocating buffers... [0.026s] Loading trace points... [0.002s] Sorting trace points... [0.967s] Computing alignments... [44.997s] Deallocating buffers... [0.027s] Loading trace points... [0.128s] Sorting trace points... [1.312s] Computing alignments... [43.332s] Deallocating buffers... [0.016s] Loading trace points... [0.102s] Sorting trace points... [1.054s] Computing alignments... [42.751s] Deallocating buffers... [0.026s] Loading trace points... [0.113s] Sorting trace points... [1.331s] Computing alignments... [45.755s] Deallocating buffers... [0.024s] Loading trace points... [0.098s] Sorting trace points... [0.983s] Computing alignments... [43.719s] Deallocating buffers... [0.026s] Loading trace points... [0.082s] Sorting trace points... [1.252s] Computing alignments... [42.924s] Deallocating buffers... [0.024s] Loading trace points... [0.064s] Sorting trace points... [1.236s] Computing alignments... [41.029s] Deallocating buffers... [0.023s] Loading trace points... [0.081s] Sorting trace points... [1.249s] Computing alignments... [40.306s] Deallocating buffers... [0.019s] Loading trace points... [0.088s] Sorting trace points... [1.279s] Computing alignments... [42.017s] Deallocating buffers... [0.024s] Loading trace points... [0.051s] Sorting trace points... [1.217s] Computing alignments... [38.211s] Deallocating buffers... [0.021s] Loading trace points... [0.082s] Sorting trace points... [1.127s] Computing alignments... [41.206s] Deallocating buffers... [0.023s] Loading trace points... [0.056s] Sorting trace points... [0.966s] Computing alignments... [39.848s] Deallocating buffers... [0.023s] Loading trace points... [0s] Sorting trace points... [0.987s] Computing alignments... [39.469s] Deallocating buffers... [0.026s] Loading trace points... [0s] [706.251s] Deallocating reference... [0.085s] Loading reference sequences... [29.438s] Masking reference... [30.898s] Initializing dictionary... [0.077s] Initializing temporary storage... [0.007s] Building reference histograms... [32.598s] Allocating buffers... [0s] Processing query block 1, reference block 7/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.082s] Building query seed array... [1.202s] Computing hash join... [4.751s] Masking low complexity seeds... [0.173s] Searching alignments... [96.511s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.195s] Building query seed array... [1.344s] Computing hash join... [4.702s] Masking low complexity seeds... [0.173s] Searching alignments... [69.123s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 1/2, index chunk 3/4. Building reference seed array... [14.081s] Building query seed array... [1.476s] Computing hash join... [4.703s] Masking low complexity seeds... [0.171s] Searching alignments... [89.417s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 1/2, index chunk 4/4. Building reference seed array... [9.897s] Building query seed array... [1.221s] Computing hash join... [4.742s] Masking low complexity seeds... [0.175s] Searching alignments... [51.29s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.41s] Building query seed array... [1.117s] Computing hash join... [4.704s] Masking low complexity seeds... [0.183s] Searching alignments... [77.898s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.429s] Building query seed array... [1.245s] Computing hash join... [4.599s] Masking low complexity seeds... [0.172s] Searching alignments... [43.94s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.098s] Building query seed array... [1.341s] Computing hash join... [4.615s] Masking low complexity seeds... [0.181s] Searching alignments... [38.278s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 2/2, index chunk 4/4. Building reference seed array... [9.618s] Building query seed array... [1.02s] Computing hash join... [4.565s] Masking low complexity seeds... [0.179s] Searching alignments... [33.694s] Deallocating memory... [0s] Deallocating buffers... [0.144s] Clearing query masking... [0.719s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [7.629s] Sorting trace points... [1.37s] Computing alignments... [46.106s] Deallocating buffers... [0.017s] Loading trace points... [0.078s] Sorting trace points... [0.994s] Computing alignments... [44.451s] Deallocating buffers... [0.026s] Loading trace points... [0.195s] Sorting trace points... [1.321s] Computing alignments... [44.839s] Deallocating buffers... [0.028s] Loading trace points... [0.077s] Sorting trace points... [1.184s] Computing alignments... [46.407s] Deallocating buffers... [0.025s] Loading trace points... [0.066s] Sorting trace points... [1.028s] Computing alignments... [44.466s] Deallocating buffers... [0.025s] Loading trace points... [0.064s] Sorting trace points... [1.133s] Computing alignments... [43.735s] Deallocating buffers... [0.025s] Loading trace points... [0.091s] Sorting trace points... [1.279s] Computing alignments... [46.601s] Deallocating buffers... [0.024s] Loading trace points... [0.085s] Sorting trace points... [1.084s] Computing alignments... [44.568s] Deallocating buffers... [0.027s] Loading trace points... [0.078s] Sorting trace points... [1.268s] Computing alignments... [43.446s] Deallocating buffers... [0.027s] Loading trace points... [0.082s] Sorting trace points... [1.295s] Computing alignments... [41.708s] Deallocating buffers... [0.024s] Loading trace points... [0.073s] Sorting trace points... [1.081s] Computing alignments... [41.121s] Deallocating buffers... [0.023s] Loading trace points... [0.082s] Sorting trace points... [0.986s] Computing alignments... [42.873s] Deallocating buffers... [0.026s] Loading trace points... [0.073s] Sorting trace points... [1.053s] Computing alignments... [39.026s] Deallocating buffers... [0.017s] Loading trace points... [0.071s] Sorting trace points... [1.193s] Computing alignments... [42.018s] Deallocating buffers... [0.027s] Loading trace points... [0.072s] Sorting trace points... [1.111s] Computing alignments... [40.76s] Deallocating buffers... [0.022s] Loading trace points... [0s] Sorting trace points... [1.165s] Computing alignments... [40.408s] Deallocating buffers... [0.024s] Loading trace points... [0s] [720.422s] Deallocating reference... [0.091s] Loading reference sequences... [31.546s] Masking reference... [32.14s] Initializing dictionary... [0.077s] Initializing temporary storage... [0.007s] Building reference histograms... [32.139s] Allocating buffers... [0s] Processing query block 1, reference block 8/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.738s] Building query seed array... [1.204s] Computing hash join... [4.675s] Masking low complexity seeds... [0.177s] Searching alignments... [94.399s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.463s] Building query seed array... [1.394s] Computing hash join... [4.862s] Masking low complexity seeds... [0.195s] Searching alignments... [64.829s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.337s] Building query seed array... [1.478s] Computing hash join... [4.635s] Masking low complexity seeds... [0.183s] Searching alignments... [90.313s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.042s] Building query seed array... [1.145s] Computing hash join... [4.723s] Masking low complexity seeds... [0.177s] Searching alignments... [48.956s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.079s] Building query seed array... [1.101s] Computing hash join... [4.664s] Masking low complexity seeds... [0.19s] Searching alignments... [75.396s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.346s] Building query seed array... [1.277s] Computing hash join... [4.646s] Masking low complexity seeds... [0.176s] Searching alignments... [43.735s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.303s] Building query seed array... [1.358s] Computing hash join... [4.698s] Masking low complexity seeds... [0.175s] Searching alignments... [37.458s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 2/2, index chunk 4/4. Building reference seed array... [9.783s] Building query seed array... [1.058s] Computing hash join... [4.572s] Masking low complexity seeds... [0.181s] Searching alignments... [33.195s] Deallocating memory... [0s] Deallocating buffers... [0.143s] Clearing query masking... [0.683s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [7.57s] Sorting trace points... [1.427s] Computing alignments... [45.09s] Deallocating buffers... [0.028s] Loading trace points... [0.077s] Sorting trace points... [0.995s] Computing alignments... [43.741s] Deallocating buffers... [0.028s] Loading trace points... [0.065s] Sorting trace points... [1.282s] Computing alignments... [44.285s] Deallocating buffers... [0.017s] Loading trace points... [0.138s] Sorting trace points... [1.225s] Computing alignments... [45.105s] Deallocating buffers... [0.025s] Loading trace points... [0.083s] Sorting trace points... [1.305s] Computing alignments... [43.166s] Deallocating buffers... [0.024s] Loading trace points... [0.07s] Sorting trace points... [1.011s] Computing alignments... [42.843s] Deallocating buffers... [0.026s] Loading trace points... [0.103s] Sorting trace points... [0.972s] Computing alignments... [45.762s] Deallocating buffers... [0.019s] Loading trace points... [1.08s] Sorting trace points... [1.051s] Computing alignments... [43.699s] Deallocating buffers... [0.026s] Loading trace points... [0.091s] Sorting trace points... [1.11s] Computing alignments... [43.211s] Deallocating buffers... [0.017s] Loading trace points... [0.071s] Sorting trace points... [1.112s] Computing alignments... [40.597s] Deallocating buffers... [0.017s] Loading trace points... [0.096s] Sorting trace points... [0.918s] Computing alignments... [40.511s] Deallocating buffers... [0.017s] Loading trace points... [0.09s] Sorting trace points... [1.071s] Computing alignments... [42.391s] Deallocating buffers... [0.025s] Loading trace points... [0.07s] Sorting trace points... [1.15s] Computing alignments... [39.057s] Deallocating buffers... [0.024s] Loading trace points... [0.091s] Sorting trace points... [1.234s] Computing alignments... [41.627s] Deallocating buffers... [0.026s] Loading trace points... [0.641s] Sorting trace points... [1.178s] Computing alignments... [40.107s] Deallocating buffers... [0.022s] Loading trace points... [0s] Sorting trace points... [1.121s] Computing alignments... [39.764s] Deallocating buffers... [0.024s] Loading trace points... [0s] [709.972s] Deallocating reference... [0.083s] Loading reference sequences... [29.33s] Masking reference... [30.937s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.008s] Building reference histograms... [33.018s] Allocating buffers... [0s] Processing query block 1, reference block 9/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.258s] Building query seed array... [1.154s] Computing hash join... [4.721s] Masking low complexity seeds... [0.178s] Searching alignments... [96.19s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.953s] Building query seed array... [1.388s] Computing hash join... [4.7s] Masking low complexity seeds... [0.18s] Searching alignments... [66.786s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.794s] Building query seed array... [1.455s] Computing hash join... [4.676s] Masking low complexity seeds... [0.174s] Searching alignments... [89.844s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.077s] Building query seed array... [1.176s] Computing hash join... [4.772s] Masking low complexity seeds... [0.175s] Searching alignments... [49.657s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 2/2, index chunk 1/4. Building reference seed array... [9.919s] Building query seed array... [1.072s] Computing hash join... [4.578s] Masking low complexity seeds... [0.174s] Searching alignments... [79.112s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.275s] Building query seed array... [1.287s] Computing hash join... [4.56s] Masking low complexity seeds... [0.17s] Searching alignments... [43.318s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.728s] Building query seed array... [1.343s] Computing hash join... [4.642s] Masking low complexity seeds... [0.181s] Searching alignments... [38.524s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 2/2, index chunk 4/4. Building reference seed array... [9.813s] Building query seed array... [1.086s] Computing hash join... [4.578s] Masking low complexity seeds... [0.177s] Searching alignments... [33.804s] Deallocating memory... [0s] Deallocating buffers... [0.14s] Clearing query masking... [0.657s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [7.573s] Sorting trace points... [1.361s] Computing alignments... [44.442s] Deallocating buffers... [0.026s] Loading trace points... [0.07s] Sorting trace points... [1.184s] Computing alignments... [43.39s] Deallocating buffers... [0.025s] Loading trace points... [0.071s] Sorting trace points... [1.368s] Computing alignments... [43.525s] Deallocating buffers... [0.025s] Loading trace points... [0.719s] Sorting trace points... [1.337s] Computing alignments... [44.272s] Deallocating buffers... [0.025s] Loading trace points... [0.044s] Sorting trace points... [1.332s] Computing alignments... [42.906s] Deallocating buffers... [0.017s] Loading trace points... [0.096s] Sorting trace points... [1.267s] Computing alignments... [42.07s] Deallocating buffers... [0.024s] Loading trace points... [0.079s] Sorting trace points... [1.322s] Computing alignments... [44.765s] Deallocating buffers... [0.025s] Loading trace points... [0.101s] Sorting trace points... [1.37s] Computing alignments... [43.071s] Deallocating buffers... [0.024s] Loading trace points... [0.091s] Sorting trace points... [1.312s] Computing alignments... [42.49s] Deallocating buffers... [0.024s] Loading trace points... [0.088s] Sorting trace points... [1.195s] Computing alignments... [40.357s] Deallocating buffers... [0.024s] Loading trace points... [0.048s] Sorting trace points... [1.237s] Computing alignments... [39.425s] Deallocating buffers... [0.015s] Loading trace points... [0.086s] Sorting trace points... [1.251s] Computing alignments... [41.759s] Deallocating buffers... [0.025s] Loading trace points... [0.098s] Sorting trace points... [1.225s] Computing alignments... [38.094s] Deallocating buffers... [0.026s] Loading trace points... [0.084s] Sorting trace points... [1.279s] Computing alignments... [41.104s] Deallocating buffers... [0.026s] Loading trace points... [0.076s] Sorting trace points... [1.218s] Computing alignments... [39.453s] Deallocating buffers... [0.022s] Loading trace points... [0s] Sorting trace points... [1.215s] Computing alignments... [39.027s] Deallocating buffers... [0.016s] Loading trace points... [0s] [700.361s] Deallocating reference... [0.057s] Loading reference sequences... [29.441s] Masking reference... [32.147s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.007s] Building reference histograms... [32.51s] Allocating buffers... [0s] Processing query block 1, reference block 10/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.578s] Building query seed array... [1.195s] Computing hash join... [4.814s] Masking low complexity seeds... [0.189s] Searching alignments... [92.729s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.434s] Building query seed array... [1.348s] Computing hash join... [4.809s] Masking low complexity seeds... [0.177s] Searching alignments... [66.481s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.438s] Building query seed array... [1.436s] Computing hash join... [4.678s] Masking low complexity seeds... [0.173s] Searching alignments... [89.986s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.48s] Building query seed array... [1.229s] Computing hash join... [4.707s] Masking low complexity seeds... [0.186s] Searching alignments... [48.609s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.406s] Building query seed array... [1.071s] Computing hash join... [4.55s] Masking low complexity seeds... [0.18s] Searching alignments... [76.661s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.671s] Building query seed array... [1.29s] Computing hash join... [4.713s] Masking low complexity seeds... [0.177s] Searching alignments... [43.283s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.375s] Building query seed array... [1.295s] Computing hash join... [4.628s] Masking low complexity seeds... [0.169s] Searching alignments... [38.301s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.372s] Building query seed array... [1.078s] Computing hash join... [4.578s] Masking low complexity seeds... [0.173s] Searching alignments... [32.41s] Deallocating memory... [0s] Deallocating buffers... [0.14s] Clearing query masking... [0.768s] Opening temporary output file... [0.003s] Computing alignments... Loading trace points... [7.572s] Sorting trace points... [1.21s] Computing alignments... [46.645s] Deallocating buffers... [0.028s] Loading trace points... [0.076s] Sorting trace points... [0.994s] Computing alignments... [44.447s] Deallocating buffers... [0.028s] Loading trace points... [0.088s] Sorting trace points... [1.296s] Computing alignments... [45.314s] Deallocating buffers... [0.028s] Loading trace points... [0.073s] Sorting trace points... [1.027s] Computing alignments... [46.356s] Deallocating buffers... [0.027s] Loading trace points... [0.092s] Sorting trace points... [0.989s] Computing alignments... [44.535s] Deallocating buffers... [0.019s] Loading trace points... [0.082s] Sorting trace points... [1.297s] Computing alignments... [43.945s] Deallocating buffers... [0.025s] Loading trace points... [0.091s] Sorting trace points... [1.321s] Computing alignments... [47.069s] Deallocating buffers... [0.028s] Loading trace points... [0.07s] Sorting trace points... [1.332s] Computing alignments... [44.839s] Deallocating buffers... [0.025s] Loading trace points... [0.084s] Sorting trace points... [1.231s] Computing alignments... [43.757s] Deallocating buffers... [0.028s] Loading trace points... [0.108s] Sorting trace points... [1.217s] Computing alignments... [41.582s] Deallocating buffers... [0.02s] Loading trace points... [0.107s] Sorting trace points... [1.195s] Computing alignments... [41.391s] Deallocating buffers... [0.016s] Loading trace points... [0.087s] Sorting trace points... [1.238s] Computing alignments... [43.465s] Deallocating buffers... [0.024s] Loading trace points... [0.096s] Sorting trace points... [1.201s] Computing alignments... [39.083s] Deallocating buffers... [0.022s] Loading trace points... [0.042s] Sorting trace points... [0.991s] Computing alignments... [42.681s] Deallocating buffers... [0.018s] Loading trace points... [0.084s] Sorting trace points... [0.998s] Computing alignments... [41.384s] Deallocating buffers... [0.024s] Loading trace points... [0s] Sorting trace points... [1.196s] Computing alignments... [40.818s] Deallocating buffers... [0.025s] Loading trace points... [0s] [725.225s] Deallocating reference... [0.089s] Loading reference sequences... [34.045s] Masking reference... [31.29s] Initializing dictionary... [0.077s] Initializing temporary storage... [0.008s] Building reference histograms... [32.26s] Allocating buffers... [0s] Processing query block 1, reference block 11/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.033s] Building query seed array... [1.206s] Computing hash join... [4.78s] Masking low complexity seeds... [0.18s] Searching alignments... [93.701s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.556s] Building query seed array... [1.358s] Computing hash join... [4.699s] Masking low complexity seeds... [0.184s] Searching alignments... [65.458s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.826s] Building query seed array... [1.436s] Computing hash join... [4.724s] Masking low complexity seeds... [0.182s] Searching alignments... [91.316s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 1/2, index chunk 4/4. Building reference seed array... [9.865s] Building query seed array... [1.172s] Computing hash join... [4.651s] Masking low complexity seeds... [0.179s] Searching alignments... [49.499s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 2/2, index chunk 1/4. Building reference seed array... [9.993s] Building query seed array... [1.128s] Computing hash join... [4.589s] Masking low complexity seeds... [0.176s] Searching alignments... [78.066s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.277s] Building query seed array... [1.238s] Computing hash join... [4.633s] Masking low complexity seeds... [0.176s] Searching alignments... [42.762s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.696s] Building query seed array... [1.358s] Computing hash join... [4.657s] Masking low complexity seeds... [0.17s] Searching alignments... [37.666s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 2/2, index chunk 4/4. Building reference seed array... [9.863s] Building query seed array... [1.051s] Computing hash join... [4.638s] Masking low complexity seeds... [0.172s] Searching alignments... [33.029s] Deallocating memory... [0s] Deallocating buffers... [0.145s] Clearing query masking... [0.661s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [7.636s] Sorting trace points... [1.437s] Computing alignments... [47.124s] Deallocating buffers... [0.028s] Loading trace points... [0.082s] Sorting trace points... [1.271s] Computing alignments... [45.129s] Deallocating buffers... [0.024s] Loading trace points... [0.145s] Sorting trace points... [1.139s] Computing alignments... [45.67s] Deallocating buffers... [0.025s] Loading trace points... [0.083s] Sorting trace points... [0.988s] Computing alignments... [46.94s] Deallocating buffers... [0.027s] Loading trace points... [0.077s] Sorting trace points... [1.311s] Computing alignments... [44.936s] Deallocating buffers... [0.024s] Loading trace points... [0.089s] Sorting trace points... [1.051s] Computing alignments... [44.331s] Deallocating buffers... [0.025s] Loading trace points... [0.08s] Sorting trace points... [1.279s] Computing alignments... [47.485s] Deallocating buffers... [0.024s] Loading trace points... [0.084s] Sorting trace points... [1.027s] Computing alignments... [45.551s] Deallocating buffers... [0.019s] Loading trace points... [0.074s] Sorting trace points... [1.03s] Computing alignments... [44.753s] Deallocating buffers... [0.026s] Loading trace points... [0.092s] Sorting trace points... [1.052s] Computing alignments... [42.653s] Deallocating buffers... [0.02s] Loading trace points... [0.095s] Sorting trace points... [1.105s] Computing alignments... [41.846s] Deallocating buffers... [0.024s] Loading trace points... [0.099s] Sorting trace points... [1.071s] Computing alignments... [43.546s] Deallocating buffers... [0.027s] Loading trace points... [0.063s] Sorting trace points... [1.197s] Computing alignments... [39.731s] Deallocating buffers... [0.015s] Loading trace points... [0.096s] Sorting trace points... [1.1s] Computing alignments... [42.878s] Deallocating buffers... [0.019s] Loading trace points... [0.072s] Sorting trace points... [0.881s] Computing alignments... [41.419s] Deallocating buffers... [0.017s] Loading trace points... [0s] Sorting trace points... [0.922s] Computing alignments... [40.838s] Deallocating buffers... [0.017s] Loading trace points... [0s] [731.962s] Deallocating reference... [0.057s] Loading reference sequences... [29.711s] Masking reference... [31.729s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.008s] Building reference histograms... [31.998s] Allocating buffers... [0s] Processing query block 1, reference block 12/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.328s] Building query seed array... [1.194s] Computing hash join... [4.723s] Masking low complexity seeds... [0.174s] Searching alignments... [95.046s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.643s] Building query seed array... [1.37s] Computing hash join... [4.781s] Masking low complexity seeds... [0.174s] Searching alignments... [68.813s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.129s] Building query seed array... [1.403s] Computing hash join... [4.595s] Masking low complexity seeds... [0.19s] Searching alignments... [87.049s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 1/2, index chunk 4/4. Building reference seed array... [9.868s] Building query seed array... [1.142s] Computing hash join... [4.76s] Masking low complexity seeds... [0.177s] Searching alignments... [48.931s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 2/2, index chunk 1/4. Building reference seed array... [9.985s] Building query seed array... [1.105s] Computing hash join... [4.597s] Masking low complexity seeds... [0.173s] Searching alignments... [77.206s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.081s] Building query seed array... [1.222s] Computing hash join... [4.522s] Masking low complexity seeds... [0.167s] Searching alignments... [42.698s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.488s] Building query seed array... [1.319s] Computing hash join... [4.61s] Masking low complexity seeds... [0.165s] Searching alignments... [38.796s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.043s] Building query seed array... [1.067s] Computing hash join... [4.608s] Masking low complexity seeds... [0.172s] Searching alignments... [32.588s] Deallocating memory... [0s] Deallocating buffers... [0.144s] Clearing query masking... [0.676s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [7.766s] Sorting trace points... [1.365s] Computing alignments... [45.438s] Deallocating buffers... [0.027s] Loading trace points... [0.066s] Sorting trace points... [1.32s] Computing alignments... [43.672s] Deallocating buffers... [0.033s] Loading trace points... [0.095s] Sorting trace points... [1.069s] Computing alignments... [44.382s] Deallocating buffers... [0.026s] Loading trace points... [0.079s] Sorting trace points... [1.258s] Computing alignments... [45.247s] Deallocating buffers... [0.028s] Loading trace points... [0.046s] Sorting trace points... [1.307s] Computing alignments... [43.731s] Deallocating buffers... [0.028s] Loading trace points... [0.077s] Sorting trace points... [1.241s] Computing alignments... [42.5s] Deallocating buffers... [0.024s] Loading trace points... [0.061s] Sorting trace points... [1.153s] Computing alignments... [45.92s] Deallocating buffers... [0.027s] Loading trace points... [0.067s] Sorting trace points... [1.102s] Computing alignments... [43.879s] Deallocating buffers... [0.026s] Loading trace points... [0.081s] Sorting trace points... [1.156s] Computing alignments... [43.146s] Deallocating buffers... [0.025s] Loading trace points... [0.065s] Sorting trace points... [1.248s] Computing alignments... [41.05s] Deallocating buffers... [0.016s] Loading trace points... [0.054s] Sorting trace points... [1.196s] Computing alignments... [40.295s] Deallocating buffers... [0.015s] Loading trace points... [0.084s] Sorting trace points... [0.994s] Computing alignments... [42.035s] Deallocating buffers... [0.025s] Loading trace points... [0.518s] Sorting trace points... [1.287s] Computing alignments... [38.695s] Deallocating buffers... [0.025s] Loading trace points... [0.075s] Sorting trace points... [1.276s] Computing alignments... [41.202s] Deallocating buffers... [0.026s] Loading trace points... [0.083s] Sorting trace points... [1.145s] Computing alignments... [40.12s] Deallocating buffers... [0.022s] Loading trace points... [0s] Sorting trace points... [1.115s] Computing alignments... [39.52s] Deallocating buffers... [0.024s] Loading trace points... [0s] [709.77s] Deallocating reference... [0.083s] Loading reference sequences... [30.145s] Masking reference... [30.902s] Initializing dictionary... [0.077s] Initializing temporary storage... [0.008s] Building reference histograms... [33.137s] Allocating buffers... [0.001s] Processing query block 1, reference block 13/14, shape 1/2, index chunk 1/4. Building reference seed array... [9.923s] Building query seed array... [1.155s] Computing hash join... [4.813s] Masking low complexity seeds... [0.179s] Searching alignments... [96.054s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.503s] Building query seed array... [1.379s] Computing hash join... [4.756s] Masking low complexity seeds... [0.176s] Searching alignments... [67.281s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.687s] Building query seed array... [1.473s] Computing hash join... [4.689s] Masking low complexity seeds... [0.18s] Searching alignments... [88.861s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.129s] Building query seed array... [1.18s] Computing hash join... [4.763s] Masking low complexity seeds... [0.179s] Searching alignments... [49.663s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.362s] Building query seed array... [1.083s] Computing hash join... [4.69s] Masking low complexity seeds... [0.171s] Searching alignments... [79.711s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.53s] Building query seed array... [1.357s] Computing hash join... [4.609s] Masking low complexity seeds... [0.177s] Searching alignments... [43.052s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.171s] Building query seed array... [1.341s] Computing hash join... [4.545s] Masking low complexity seeds... [0.173s] Searching alignments... [37.034s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.096s] Building query seed array... [1.104s] Computing hash join... [4.586s] Masking low complexity seeds... [0.179s] Searching alignments... [32.476s] Deallocating memory... [0s] Deallocating buffers... [0.159s] Clearing query masking... [0.676s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [7.476s] Sorting trace points... [1.39s] Computing alignments... [46.811s] Deallocating buffers... [0.027s] Loading trace points... [0.078s] Sorting trace points... [1.317s] Computing alignments... [45.19s] Deallocating buffers... [0.029s] Loading trace points... [0.084s] Sorting trace points... [1.086s] Computing alignments... [45.915s] Deallocating buffers... [0.018s] Loading trace points... [0.044s] Sorting trace points... [1.035s] Computing alignments... [47.221s] Deallocating buffers... [0.026s] Loading trace points... [0.093s] Sorting trace points... [0.976s] Computing alignments... [45.153s] Deallocating buffers... [0.019s] Loading trace points... [0.507s] Sorting trace points... [1.301s] Computing alignments... [44.072s] Deallocating buffers... [0.027s] Loading trace points... [0.059s] Sorting trace points... [1.335s] Computing alignments... [47.634s] Deallocating buffers... [0.026s] Loading trace points... [0.064s] Sorting trace points... [1.171s] Computing alignments... [45.496s] Deallocating buffers... [0.02s] Loading trace points... [0.059s] Sorting trace points... [1.234s] Computing alignments... [44.184s] Deallocating buffers... [0.027s] Loading trace points... [0.064s] Sorting trace points... [0.981s] Computing alignments... [42.574s] Deallocating buffers... [0.026s] Loading trace points... [0.073s] Sorting trace points... [1.15s] Computing alignments... [41.066s] Deallocating buffers... [0.016s] Loading trace points... [0.066s] Sorting trace points... [1.308s] Computing alignments... [43.483s] Deallocating buffers... [0.028s] Loading trace points... [0.043s] Sorting trace points... [0.994s] Computing alignments... [39.828s] Deallocating buffers... [0.029s] Loading trace points... [0.066s] Sorting trace points... [1.28s] Computing alignments... [42.672s] Deallocating buffers... [0.027s] Loading trace points... [0.057s] Sorting trace points... [0.923s] Computing alignments... [41.248s] Deallocating buffers... [0.023s] Loading trace points... [0s] Sorting trace points... [1.247s] Computing alignments... [41.002s] Deallocating buffers... [0.023s] Loading trace points... [0s] [731.547s] Deallocating reference... [0.088s] Loading reference sequences... [23.671s] Masking reference... [26.096s] Initializing dictionary... [0.063s] Initializing temporary storage... [0.008s] Building reference histograms... [26.145s] Allocating buffers... [0s] Processing query block 1, reference block 14/14, shape 1/2, index chunk 1/4. Building reference seed array... [8.159s] Building query seed array... [1.14s] Computing hash join... [3.865s] Masking low complexity seeds... [0.167s] Searching alignments... [75.125s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 1/2, index chunk 2/4. Building reference seed array... [10.257s] Building query seed array... [1.378s] Computing hash join... [3.82s] Masking low complexity seeds... [0.156s] Searching alignments... [54.185s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 1/2, index chunk 3/4. Building reference seed array... [10.899s] Building query seed array... [1.418s] Computing hash join... [3.881s] Masking low complexity seeds... [0.162s] Searching alignments... [70.374s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 1/2, index chunk 4/4. Building reference seed array... [8.418s] Building query seed array... [1.177s] Computing hash join... [3.926s] Masking low complexity seeds... [0.174s] Searching alignments... [40.137s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 2/2, index chunk 1/4. Building reference seed array... [7.995s] Building query seed array... [1.059s] Computing hash join... [3.844s] Masking low complexity seeds... [0.159s] Searching alignments... [60.493s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 2/2, index chunk 2/4. Building reference seed array... [9.949s] Building query seed array... [1.274s] Computing hash join... [3.814s] Masking low complexity seeds... [0.161s] Searching alignments... [35.122s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 2/2, index chunk 3/4. Building reference seed array... [10.635s] Building query seed array... [1.317s] Computing hash join... [3.856s] Masking low complexity seeds... [0.174s] Searching alignments... [30.048s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 2/2, index chunk 4/4. Building reference seed array... [7.825s] Building query seed array... [1.096s] Computing hash join... [3.735s] Masking low complexity seeds... [0.153s] Searching alignments... [26.842s] Deallocating memory... [0s] Deallocating buffers... [0.115s] Clearing query masking... [0.686s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [6.363s] Sorting trace points... [1.107s] Computing alignments... [35.107s] Deallocating buffers... [0.022s] Loading trace points... [0.061s] Sorting trace points... [1.043s] Computing alignments... [34s] Deallocating buffers... [0.02s] Loading trace points... [0.056s] Sorting trace points... [1.065s] Computing alignments... [34.186s] Deallocating buffers... [0.02s] Loading trace points... [0.062s] Sorting trace points... [0.875s] Computing alignments... [34.836s] Deallocating buffers... [0.021s] Loading trace points... [0.064s] Sorting trace points... [0.966s] Computing alignments... [33.701s] Deallocating buffers... [0.021s] Loading trace points... [0.056s] Sorting trace points... [0.782s] Computing alignments... [33.123s] Deallocating buffers... [0.02s] Loading trace points... [0.075s] Sorting trace points... [0.887s] Computing alignments... [35.572s] Deallocating buffers... [0.021s] Loading trace points... [0.045s] Sorting trace points... [1.085s] Computing alignments... [34.156s] Deallocating buffers... [0.02s] Loading trace points... [0.151s] Sorting trace points... [1.064s] Computing alignments... [33.403s] Deallocating buffers... [0.022s] Loading trace points... [0.134s] Sorting trace points... [1.643s] Computing alignments... [63.181s] Deallocating buffers... [0.039s] Loading trace points... [0.111s] Sorting trace points... [2.029s] Computing alignments... [62.347s] Deallocating buffers... [0.036s] Loading trace points... [0.059s] Sorting trace points... [1.87s] Computing alignments... [62.099s] Deallocating buffers... [0.036s] Loading trace points... [0s] Sorting trace points... [0.841s] Computing alignments... [30.622s] Deallocating buffers... [0.02s] Loading trace points... [0s] [549.184s] Deallocating reference... [0.075s] Loading reference sequences... [0.077s] Deallocating buffers... [0s] Joining output blocks... Joining output blocks... [3268.53s] [3268.53s] Deallocating queries... [0.033s] Loading query sequences... [0s] Closing the input file... [0s] Closing the output file... Loading dictionary... [2.284s] [2.781s] Closing the database... [0s] Cleaning up... [0s] Total time = 23349.1s Reported 3689503411 pairwise alignments, 3689503411 HSPs. 3048532 queries aligned. DIAMOND BLASTx on /gscratch/scrubbed/samwhite/data/P_helianthoides/RNAseq/PSC-0519_unmapped_reads.2.fastq complete: PSC-0519_unmapped_reads.2.blastx.meganized.daa Now MEGANizing PSC-0519_unmapped_reads.2.blastx.meganized.daa Version MEGAN Community Edition (version 6.22.0, built 19 Feb 2022) Author(s) Daniel H. Huson Copyright (C) 2022 Daniel H. Huson. This program comes with ABSOLUTELY NO WARRANTY. Java version: 17.0.2 Functional classifications to use: EC, EGGNOG, GTDB, INTERPRO2GO, SEED Loading ncbi.map: 2,396,736 Loading ncbi.tre: 2,396,740 Loading ec.map: 8,200 Loading ec.tre: 8,204 Loading eggnog.map: 30,875 Loading eggnog.tre: 30,986 Loading gtdb.map: 240,103 Loading gtdb.tre: 240,107 Loading interpro2go.map: 14,242 Loading interpro2go.tre: 28,907 Loading seed.map: 961 Loading seed.tre: 962 Meganizing: PSC-0519_unmapped_reads.2.blastx.meganized.daa Meganizing init Annotating DAA file using FAST mode (accession database and first accession per line) Annotating references 10% 20% 30% 40% 100% (141.6s) Writing 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (0.8s) Binning reads Initializing... Initializing binning... Using 'Naive LCA' algorithm for binning: Taxonomy Using Best-Hit algorithm for binning: SEED Using Best-Hit algorithm for binning: EGGNOG Using 'Naive LCA' algorithm for binning: GTDB Using Best-Hit algorithm for binning: EC Using Best-Hit algorithm for binning: INTERPRO2GO Binning reads... Binning reads Analyzing alignments 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (3,982.2s) Total reads: 3,048,532 With hits: 3,048,532 Alignments: 1,851,918,004 Assig. Taxonomy: 2,894,375 Assig. SEED: 91,271 Assig. EGGNOG: 8,862 Assig. GTDB: 213,997 Assig. EC: 338,977 Assig. INTERPRO2GO: 784,915 MinSupport set to: 1524 Binning reads Applying min-support & disabled filter to Taxonomy... 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (0.4s) Min-supp. changes: 2,131 Binning reads Applying min-support & disabled filter to GTDB... 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (2.4s) Min-supp. changes: 959 Binning reads Writing classification tables 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (4.2s) Binning reads Syncing 100% (0.3s) Class. Taxonomy: 134 Class. SEED: 223 Class. EGGNOG: 305 Class. GTDB: 33 Class. EC: 1,129 Class. INTERPRO2GO: 4,409 Total time: 4,140s Peak memory: 48.7 of 195.3G MEGANization of PSC-0519_unmapped_reads.2.blastx.meganized.daa completed. Generating MD5 checksum for /gscratch/scrubbed/samwhite/data/P_helianthoides/RNAseq/PSC-0525_unmapped_reads.1.fastq... md5sum: /gscratch/scrubbed/samwhite/data/P_helianthoides/RNAseq/PSC-0525_unmapped_reads.1.fastq: No such file or directory Running DIAMOND BLASTx on /gscratch/scrubbed/samwhite/data/P_helianthoides/RNAseq/PSC-0525_unmapped_reads.1.fastq. diamond v2.1.1.155 (C) Max Planck Society for the Advancement of Science Documentation, support and updates available at http://www.diamondsearch.org Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021) #CPU threads: 40 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: Percentage range of top alignment score to report hits: 5 Opening the database... [0.34s] Database: /gscratch/srlab/blastdbs/20230215-ncbi-nr/20230215-ncbi-nr.dmnd (type: Diamond database, sequences: 526308523, letters: 207134680681) Block size = 15000000000 Opening the input file... Error opening file /gscratch/scrubbed/samwhite/data/P_helianthoides/RNAseq/PSC-0525_unmapped_reads.1.fastq: No such file or directory