Version   MEGAN Community Edition (version 6.24.23, built 9 May 2023)
Author(s) Daniel H. Huson
Copyright (C) 2023 Daniel H. Huson. This program comes with ABSOLUTELY NO WARRANTY.
This is free software, licensed under the terms of the GNU General Public License, Version 3.
Sources available at: https://github.com/husonlab/megan-ce
Java version: 20.0.1; max memory: 63.5G

Opening startup files
Loading ncbi.map: 2,396,736
Loading ncbi.tre: 2,396,740
Executing: open file='/media/sam/8TB_HDD/20230702-mmag-daa2rma/CH01-06.trimmed.R1.blastx.meganized.daa.daa2rma.rma6';open file='/media/sam/8TB_HDD/20230702-mmag-daa2rma/CH01-06.trimmed.R2.blastx.meganized.daa.daa2rma.rma6';
Info: Opened file 'CH01-06.trimmed.R1.blastx.meganized.daa.daa2rma.rma6' with 4,216,422 reads
Executing: open file='/media/sam/8TB_HDD/20230702-mmag-daa2rma/CH01-06.trimmed.R2.blastx.meganized.daa.daa2rma.rma6' readOnly=false;
Opened file '/media/sam/8TB_HDD/20230702-mmag-daa2rma/CH01-06.trimmed.R2.blastx.meganized.daa.daa2rma.rma6' with 4,240,909 reads
Executing: collapse rank='Phylum';select rank='Phylum';
Executing: show window=ExtractReads;
Executing: set summarized=true;
Executing: extract what=reads outdir='/media/sam/8TB_HDD/20230726-mmag-read_extraction' outfile='CH01-06.trimmed.R1MEGAN_summarized_reads-arthropoda_NA.fasta' data=Taxonomy ids= 6656 -2 allBelow=true;
Writing to: /media/sam/8TB_HDD/20230726-mmag-read_extraction/CH01-06.trimmed.R1MEGAN_summarized_reads-arthropoda_NA.fasta
Executing: collapse rank='Phylum';select rank='Phylum';
Executing: show window=ExtractReads;
Executing: set summarized=true;
Executing: extract what=reads outdir='/media/sam/8TB_HDD/20230726-mmag-read_extraction' outfile='CH01-06.trimmed.R2-MEGAN_summarized_reads-arthropoda_NA.fasta' data=Taxonomy ids= 6656 -2 allBelow=true;
Writing to: /media/sam/8TB_HDD/20230726-mmag-read_extraction/CH01-06.trimmed.R2-MEGAN_summarized_reads-arthropoda_NA.fasta
Info: Number of reads written: 3261155
Info: Command completed (233s): extract what=reads outdir='/media/sam/8TB_HDD/20230726-mmag-read_extraction' outfile='CH01-06.trimmed.R2-MEGAN_summarized_re...
Executing: open file='/media/sam/8TB_HDD/20230702-mmag-daa2rma/CH01-14.trimmed.R1.blastx.meganized.daa.daa2rma.rma6';open file='/media/sam/8TB_HDD/20230702-mmag-daa2rma/CH01-14.trimmed.R2.blastx.meganized.daa.daa2rma.rma6';
Executing: open file='/media/sam/8TB_HDD/20230702-mmag-daa2rma/CH01-14.trimmed.R1.blastx.meganized.daa.daa2rma.rma6' readOnly=false;
Executing: open file='/media/sam/8TB_HDD/20230702-mmag-daa2rma/CH01-14.trimmed.R2.blastx.meganized.daa.daa2rma.rma6' readOnly=false;
Info: Opened file 'CH01-14.trimmed.R1.blastx.meganized.daa.daa2rma.rma6' with 7,672,210 reads
Opened file '/media/sam/8TB_HDD/20230702-mmag-daa2rma/CH01-14.trimmed.R2.blastx.meganized.daa.daa2rma.rma6' with 7,709,948 reads
Executing: collapse rank='Phylum';select rank='Phylum';
Executing: show window=ExtractReads;
Executing: set summarized=true;
Executing: extract what=reads outdir='/media/sam/8TB_HDD/20230726-mmag-read_extraction' outfile='CH01-14.trimmed.R1-MEGAN_summarized_reads-arthropoda_NA.fasta' data=Taxonomy ids= 6656 -2 allBelow=true;
Writing to: /media/sam/8TB_HDD/20230726-mmag-read_extraction/CH01-14.trimmed.R1-MEGAN_summarized_reads-arthropoda_NA.fasta
Executing: collapse rank='Phylum';select rank='Phylum';
Executing: show window=ExtractReads;
Executing: set summarized=true;
Executing: extract what=reads outdir='/media/sam/8TB_HDD/20230726-mmag-read_extraction' outfile='CH01-14.trimmed.R2-MEGAN_summarized_reads-arthropoda_NA.fasta' data=Taxonomy ids= 6656 -2 allBelow=true;
Writing to: /media/sam/8TB_HDD/20230726-mmag-read_extraction/CH01-14.trimmed.R2-MEGAN_summarized_reads-arthropoda_NA.fasta
Info: Number of reads written: 3235169
Info: Command completed (427s): extract what=reads outdir='/media/sam/8TB_HDD/20230726-mmag-read_extraction' outfile='CH01-06.trimmed.R1MEGAN_summarized_rea...
Executing: close what=current;
Executing: open file='/media/sam/8TB_HDD/20230702-mmag-daa2rma/CH01-22.trimmed.R1.blastx.meganized.daa.daa2rma.rma6';open file='/media/sam/8TB_HDD/20230702-mmag-daa2rma/CH01-22.trimmed.R2.blastx.meganized.daa.daa2rma.rma6';
Executing: open file='/media/sam/8TB_HDD/20230702-mmag-daa2rma/CH01-22.trimmed.R1.blastx.meganized.daa.daa2rma.rma6' readOnly=false;
Executing: open file='/media/sam/8TB_HDD/20230702-mmag-daa2rma/CH01-22.trimmed.R2.blastx.meganized.daa.daa2rma.rma6' readOnly=false;
Info: Opened file 'CH01-22.trimmed.R1.blastx.meganized.daa.daa2rma.rma6' with 5,022,039 reads
Opened file '/media/sam/8TB_HDD/20230702-mmag-daa2rma/CH01-22.trimmed.R2.blastx.meganized.daa.daa2rma.rma6' with 5,072,643 reads
Executing: collapse rank='Phylum';select rank='Phylum';
Executing: show window=ExtractReads;
Executing: set summarized=true;
Executing: extract what=reads outdir='/media/sam/8TB_HDD/20230726-mmag-read_extraction' outfile='CH01-22.trimmed.R1-MEGAN_summarized_reads-arthropoda_NA.fasta' data=Taxonomy ids= 6656 -2 allBelow=true;
Writing to: /media/sam/8TB_HDD/20230726-mmag-read_extraction/CH01-22.trimmed.R1-MEGAN_summarized_reads-arthropoda_NA.fasta
Executing: close what=current;
Executing: collapse rank='Phylum';select rank='Phylum';
Executing: show window=ExtractReads;
Executing: set summarized=true;
Executing: extract what=reads outdir='/media/sam/8TB_HDD/20230726-mmag-read_extraction' outfile='CH01-22.trimmed.R2-MEGAN_summarized_reads-arthropoda_NA.fasta' data=Taxonomy ids= 6656 -2 allBelow=true;
Writing to: /media/sam/8TB_HDD/20230726-mmag-read_extraction/CH01-22.trimmed.R2-MEGAN_summarized_reads-arthropoda_NA.fasta
Info: Number of reads written: 3711192
Info: Command completed (1164s): extract what=reads outdir='/media/sam/8TB_HDD/20230726-mmag-read_extraction' outfile='CH01-22.trimmed.R1-MEGAN_summarized_r...
Info: Number of reads written: 3758600
Info: Command completed (1197s): extract what=reads outdir='/media/sam/8TB_HDD/20230726-mmag-read_extraction' outfile='CH01-22.trimmed.R2-MEGAN_summarized_r...
Info: Number of reads written: 5866806
Info: Command completed (1762s): extract what=reads outdir='/media/sam/8TB_HDD/20230726-mmag-read_extraction' outfile='CH01-14.trimmed.R1-MEGAN_summarized_r...
Info: Number of reads written: 5907075
Info: Command completed (1795s): extract what=reads outdir='/media/sam/8TB_HDD/20230726-mmag-read_extraction' outfile='CH01-14.trimmed.R2-MEGAN_summarized_r...
Executing: close what=current;
Executing: close what=current;
Executing: close what=current;
Executing: open file='/media/sam/8TB_HDD/20230702-mmag-daa2rma/CH01-38.trimmed.R1.blastx.meganized.daa.daa2rma.rma6';open file='/media/sam/8TB_HDD/20230702-mmag-daa2rma/CH01-38.trimmed.R2.blastx.meganized.daa.daa2rma.rma6';
Executing: open file='/media/sam/8TB_HDD/20230702-mmag-daa2rma/CH01-38.trimmed.R1.blastx.meganized.daa.daa2rma.rma6' readOnly=false;
Executing: open file='/media/sam/8TB_HDD/20230702-mmag-daa2rma/CH01-38.trimmed.R2.blastx.meganized.daa.daa2rma.rma6' readOnly=false;
Info: Opened file 'CH01-38.trimmed.R1.blastx.meganized.daa.daa2rma.rma6' with 8,073,779 reads
Opened file '/media/sam/8TB_HDD/20230702-mmag-daa2rma/CH01-38.trimmed.R2.blastx.meganized.daa.daa2rma.rma6' with 8,153,552 reads
Executing: collapse rank='Phylum';select rank='Phylum';
Executing: show window=ExtractReads;
Executing: set summarized=true;
Executing: extract what=reads outdir='/media/sam/8TB_HDD/20230726-mmag-read_extraction' outfile='CH01-38.trimmed.R1-MEGAN_summarized_reads-arthropoda_NA.fasta' data=Taxonomy ids= 6656 -2 allBelow=true;
Writing to: /media/sam/8TB_HDD/20230726-mmag-read_extraction/CH01-38.trimmed.R1-MEGAN_summarized_reads-arthropoda_NA.fasta
Executing: close what=current;
Executing: collapse rank='Phylum';select rank='Phylum';
Executing: show window=ExtractReads;
Executing: set summarized=true;
Executing: extract what=reads outdir='/media/sam/8TB_HDD/20230726-mmag-read_extraction' outfile='CH01-38.trimmed.R2-MEGAN_summarized_reads-arthropoda_NA.fasta' data=Taxonomy ids= 6656 -2 allBelow=true;
Writing to: /media/sam/8TB_HDD/20230726-mmag-read_extraction/CH01-38.trimmed.R2-MEGAN_summarized_reads-arthropoda_NA.fasta
Info: Number of reads written: 6319633
Info: Command completed (909s): extract what=reads outdir='/media/sam/8TB_HDD/20230726-mmag-read_extraction' outfile='CH01-38.trimmed.R1-MEGAN_summarized_re...
Info: Number of reads written: 6401572
Info: Command completed (1060s): extract what=reads outdir='/media/sam/8TB_HDD/20230726-mmag-read_extraction' outfile='CH01-38.trimmed.R2-MEGAN_summarized_r...
Executing: close what=current;
Executing: open file='/media/sam/8TB_HDD/20230702-mmag-daa2rma/CH03-04.trimmed.R1.blastx.meganized.daa.daa2rma.rma6';open file='/media/sam/8TB_HDD/20230702-mmag-daa2rma/CH03-04.trimmed.R2.blastx.meganized.daa.daa2rma.rma6';
Executing: open file='/media/sam/8TB_HDD/20230702-mmag-daa2rma/CH03-04.trimmed.R1.blastx.meganized.daa.daa2rma.rma6' readOnly=false;
Executing: open file='/media/sam/8TB_HDD/20230702-mmag-daa2rma/CH03-04.trimmed.R2.blastx.meganized.daa.daa2rma.rma6' readOnly=false;
Info: Opened file 'CH03-04.trimmed.R1.blastx.meganized.daa.daa2rma.rma6' with 4,276,280 reads
Opened file '/media/sam/8TB_HDD/20230702-mmag-daa2rma/CH03-04.trimmed.R2.blastx.meganized.daa.daa2rma.rma6' with 4,301,510 reads
Executing: collapse rank='Phylum';select rank='Phylum';
Executing: show window=ExtractReads;
Executing: set summarized=true;
Executing: extract what=reads outdir='/media/sam/8TB_HDD/20230726-mmag-read_extraction' outfile='CH03-04.trimmed.R1-MEGAN_summarized_reads-arthropoda_NA.fasta' data=Taxonomy ids= 6656 -2 allBelow=true;
Writing to: /media/sam/8TB_HDD/20230726-mmag-read_extraction/CH03-04.trimmed.R1-MEGAN_summarized_reads-arthropoda_NA.fasta
Executing: collapse rank='Phylum';select rank='Phylum';
Executing: show window=ExtractReads;
Executing: set summarized=true;
Executing: extract what=reads outdir='/media/sam/8TB_HDD/20230726-mmag-read_extraction' outfile='CH03-04.trimmed.R2-MEGAN_summarized_reads-arthropoda_NA.fasta' data=Taxonomy ids= 6656 -2 allBelow=true;
Writing to: /media/sam/8TB_HDD/20230726-mmag-read_extraction/CH03-04.trimmed.R2-MEGAN_summarized_reads-arthropoda_NA.fasta
Info: Number of reads written: 3257474
Info: Command completed (517s): extract what=reads outdir='/media/sam/8TB_HDD/20230726-mmag-read_extraction' outfile='CH03-04.trimmed.R1-MEGAN_summarized_re...
Info: Number of reads written: 3281133
Info: Command completed (588s): extract what=reads outdir='/media/sam/8TB_HDD/20230726-mmag-read_extraction' outfile='CH03-04.trimmed.R2-MEGAN_summarized_re...
Executing: close what=current;
Executing: open file='/media/sam/8TB_HDD/20230702-mmag-daa2rma/CH03-15.trimmed.R1.blastx.meganized.daa.daa2rma.rma6';open file='/media/sam/8TB_HDD/20230702-mmag-daa2rma/CH03-15.trimmed.R2.blastx.meganized.daa.daa2rma.rma6';
Executing: open file='/media/sam/8TB_HDD/20230702-mmag-daa2rma/CH03-15.trimmed.R1.blastx.meganized.daa.daa2rma.rma6' readOnly=false;
Executing: open file='/media/sam/8TB_HDD/20230702-mmag-daa2rma/CH03-15.trimmed.R2.blastx.meganized.daa.daa2rma.rma6' readOnly=false;
Info: Opened file 'CH03-15.trimmed.R1.blastx.meganized.daa.daa2rma.rma6' with 5,364,441 reads
Opened file '/media/sam/8TB_HDD/20230702-mmag-daa2rma/CH03-15.trimmed.R2.blastx.meganized.daa.daa2rma.rma6' with 5,432,664 reads
Executing: close what=current;
Executing: close what=current;
Executing: collapse rank='Phylum';select rank='Phylum';
Executing: show window=ExtractReads;
Executing: set summarized=true;
Executing: extract what=reads outdir='/media/sam/8TB_HDD/20230726-mmag-read_extraction' outfile='CH03-15.trimmed.R1-MEGAN_summarized_reads-arthropoda_NA.fasta' data=Taxonomy ids= 6656 -2 allBelow=true;
Writing to: /media/sam/8TB_HDD/20230726-mmag-read_extraction/CH03-15.trimmed.R1-MEGAN_summarized_reads-arthropoda_NA.fasta
Executing: collapse rank='Phylum';select rank='Phylum';
Executing: show window=ExtractReads;
Executing: set summarized=true;
Executing: extract what=reads outdir='/media/sam/8TB_HDD/20230726-mmag-read_extraction' outfile='CH03-15.trimmed.R2-MEGAN_summarized_reads-arthropoda_NA.fasta' data=Taxonomy ids= 6656 -2 allBelow=true;
Writing to: /media/sam/8TB_HDD/20230726-mmag-read_extraction/CH03-15.trimmed.R2-MEGAN_summarized_reads-arthropoda_NA.fasta
Info: Number of reads written: 4336807
Info: Command completed (699s): extract what=reads outdir='/media/sam/8TB_HDD/20230726-mmag-read_extraction' outfile='CH03-15.trimmed.R1-MEGAN_summarized_re...
Info: Number of reads written: 4402412
Info: Command completed (759s): extract what=reads outdir='/media/sam/8TB_HDD/20230726-mmag-read_extraction' outfile='CH03-15.trimmed.R2-MEGAN_summarized_re...
Executing: close what=current;
Executing: open file='/media/sam/8TB_HDD/20230702-mmag-daa2rma/CH03-33.trimmed.R1.blastx.meganized.daa.daa2rma.rma6';open file='/media/sam/8TB_HDD/20230702-mmag-daa2rma/CH03-33.trimmed.R2.blastx.meganized.daa.daa2rma.rma6';
Executing: open file='/media/sam/8TB_HDD/20230702-mmag-daa2rma/CH03-33.trimmed.R1.blastx.meganized.daa.daa2rma.rma6' readOnly=false;
Executing: open file='/media/sam/8TB_HDD/20230702-mmag-daa2rma/CH03-33.trimmed.R2.blastx.meganized.daa.daa2rma.rma6' readOnly=false;
Info: Opened file 'CH03-33.trimmed.R1.blastx.meganized.daa.daa2rma.rma6' with 4,886,982 reads
Opened file '/media/sam/8TB_HDD/20230702-mmag-daa2rma/CH03-33.trimmed.R2.blastx.meganized.daa.daa2rma.rma6' with 4,962,456 reads
Executing: collapse rank='Phylum';select rank='Phylum';
Executing: show window=ExtractReads;
Executing: set summarized=true;
Executing: extract what=reads outdir='/media/sam/8TB_HDD/20230726-mmag-read_extraction' outfile='CH03-33.trimmed.R1-MEGAN_summarized_reads-arthropoda_NA.fasta' data=Taxonomy ids= 6656 -2 allBelow=true;
Writing to: /media/sam/8TB_HDD/20230726-mmag-read_extraction/CH03-33.trimmed.R1-MEGAN_summarized_reads-arthropoda_NA.fasta
Executing: close what=current;
Executing: collapse rank='Phylum';select rank='Phylum';
Executing: show window=ExtractReads;
Executing: set summarized=true;
Executing: extract what=reads outdir='/media/sam/8TB_HDD/20230726-mmag-read_extraction' outfile='CH03-33.trimmed.R2-MEGAN_summarized_reads-arthropoda_NA.fasta' data=Taxonomy ids= 6656 -2 allBelow=true;
Writing to: /media/sam/8TB_HDD/20230726-mmag-read_extraction/CH03-33.trimmed.R2-MEGAN_summarized_reads-arthropoda_NA.fasta
Info: Number of reads written: 3805421
Info: Command completed (633s): extract what=reads outdir='/media/sam/8TB_HDD/20230726-mmag-read_extraction' outfile='CH03-33.trimmed.R1-MEGAN_summarized_re...
Info: Number of reads written: 3879398
Info: Command completed (708s): extract what=reads outdir='/media/sam/8TB_HDD/20230726-mmag-read_extraction' outfile='CH03-33.trimmed.R2-MEGAN_summarized_re...
Executing: close what=current;
Executing: open file='/media/sam/8TB_HDD/20230702-mmag-daa2rma/CH05-01.trimmed.R1.blastx.meganized.daa.daa2rma.rma6';open file='/media/sam/8TB_HDD/20230702-mmag-daa2rma/CH05-01.trimmed.R2.blastx.meganized.daa.daa2rma.rma6';
Executing: open file='/media/sam/8TB_HDD/20230702-mmag-daa2rma/CH05-01.trimmed.R1.blastx.meganized.daa.daa2rma.rma6' readOnly=false;
Executing: open file='/media/sam/8TB_HDD/20230702-mmag-daa2rma/CH05-01.trimmed.R2.blastx.meganized.daa.daa2rma.rma6' readOnly=false;
Info: Opened file 'CH05-01.trimmed.R1.blastx.meganized.daa.daa2rma.rma6' with 4,982,296 reads
Opened file '/media/sam/8TB_HDD/20230702-mmag-daa2rma/CH05-01.trimmed.R2.blastx.meganized.daa.daa2rma.rma6' with 5,032,259 reads
Executing: collapse rank='Phylum';select rank='Phylum';
Executing: show window=ExtractReads;
Executing: set summarized=true;
Executing: extract what=reads outdir='/media/sam/8TB_HDD/20230726-mmag-read_extraction' outfile='CH05-01.trimmed.R1-MEGAN_summarized_reads-arthropoda_NA.fasta' data=Taxonomy ids= 6656 -2 allBelow=true;
Writing to: /media/sam/8TB_HDD/20230726-mmag-read_extraction/CH05-01.trimmed.R1-MEGAN_summarized_reads-arthropoda_NA.fasta
Executing: close what=current;
Executing: collapse rank='Phylum';select rank='Phylum';
Executing: show window=ExtractReads;
Executing: set summarized=true;
Executing: extract what=reads outdir='/media/sam/8TB_HDD/20230726-mmag-read_extraction' outfile='CH05-01.trimmed.R2-MEGAN_summarized_reads-arthropoda_NA.fasta' data=Taxonomy ids= 6656 -2 allBelow=true;
Writing to: /media/sam/8TB_HDD/20230726-mmag-read_extraction/CH05-01.trimmed.R2-MEGAN_summarized_reads-arthropoda_NA.fasta
Info: Number of reads written: 4027593
Info: Command completed (572s): extract what=reads outdir='/media/sam/8TB_HDD/20230726-mmag-read_extraction' outfile='CH05-01.trimmed.R1-MEGAN_summarized_re...
Info: Number of reads written: 4078990
Info: Command completed (651s): extract what=reads outdir='/media/sam/8TB_HDD/20230726-mmag-read_extraction' outfile='CH05-01.trimmed.R2-MEGAN_summarized_re...
Executing: close what=current;
Executing: open file='/media/sam/8TB_HDD/20230702-mmag-daa2rma/CH05-06.trimmed.R1.blastx.meganized.daa.daa2rma.rma6';open file='/media/sam/8TB_HDD/20230702-mmag-daa2rma/CH05-06.trimmed.R2.blastx.meganized.daa.daa2rma.rma6';
Executing: open file='/media/sam/8TB_HDD/20230702-mmag-daa2rma/CH05-06.trimmed.R1.blastx.meganized.daa.daa2rma.rma6' readOnly=false;
Executing: open file='/media/sam/8TB_HDD/20230702-mmag-daa2rma/CH05-06.trimmed.R2.blastx.meganized.daa.daa2rma.rma6' readOnly=false;
Info: Opened file 'CH05-06.trimmed.R1.blastx.meganized.daa.daa2rma.rma6' with 4,177,884 reads
Opened file '/media/sam/8TB_HDD/20230702-mmag-daa2rma/CH05-06.trimmed.R2.blastx.meganized.daa.daa2rma.rma6' with 4,203,725 reads
Executing: close what=current;
Executing: collapse rank='Phylum';select rank='Phylum';
Executing: show window=ExtractReads;
Executing: set summarized=true;
Executing: extract what=reads outdir='/media/sam/8TB_HDD/20230726-mmag-read_extraction' outfile='CH05-06.trimmed.R1-MEGAN_summarized_reads-arthropoda_NA.fasta' data=Taxonomy ids= 6656 -2 allBelow=true;
Writing to: /media/sam/8TB_HDD/20230726-mmag-read_extraction/CH05-06.trimmed.R1-MEGAN_summarized_reads-arthropoda_NA.fasta
Executing: collapse rank='Phylum';select rank='Phylum';
Executing: show window=ExtractReads;
Executing: set summarized=true;
Executing: extract what=reads outdir='/media/sam/8TB_HDD/20230726-mmag-read_extraction' outfile='CH05-06.trimmed.R2-MEGAN_summarized_reads-arthropoda_NA.fasta' data=Taxonomy ids= 6656 -2 allBelow=true;
Writing to: /media/sam/8TB_HDD/20230726-mmag-read_extraction/CH05-06.trimmed.R2-MEGAN_summarized_reads-arthropoda_NA.fasta
Info: Number of reads written: 3304880
Info: Command completed (460s): extract what=reads outdir='/media/sam/8TB_HDD/20230726-mmag-read_extraction' outfile='CH05-06.trimmed.R1-MEGAN_summarized_re...
Info: Number of reads written: 3330833
Info: Command completed (529s): extract what=reads outdir='/media/sam/8TB_HDD/20230726-mmag-read_extraction' outfile='CH05-06.trimmed.R2-MEGAN_summarized_re...
Executing: close what=current;
Executing: open file='/media/sam/8TB_HDD/20230702-mmag-daa2rma/CH05-07.trimmed.R1.blastx.meganized.daa.daa2rma.rma6';open file='/media/sam/8TB_HDD/20230702-mmag-daa2rma/CH05-07.trimmed.R2.blastx.meganized.daa.daa2rma.rma6';
Executing: open file='/media/sam/8TB_HDD/20230702-mmag-daa2rma/CH05-07.trimmed.R1.blastx.meganized.daa.daa2rma.rma6' readOnly=false;
Executing: open file='/media/sam/8TB_HDD/20230702-mmag-daa2rma/CH05-07.trimmed.R2.blastx.meganized.daa.daa2rma.rma6' readOnly=false;
Info: Opened file 'CH05-07.trimmed.R1.blastx.meganized.daa.daa2rma.rma6' with 4,887,125 reads
Opened file '/media/sam/8TB_HDD/20230702-mmag-daa2rma/CH05-07.trimmed.R2.blastx.meganized.daa.daa2rma.rma6' with 4,963,230 reads
Executing: close what=current;
Executing: collapse rank='Phylum';select rank='Phylum';
Executing: show window=ExtractReads;
Executing: set summarized=true;
Executing: extract what=reads outdir='/media/sam/8TB_HDD/20230726-mmag-read_extraction' outfile='CH05-07.trimmed.R1-MEGAN_summarized_reads-arthropoda_NA.fasta' data=Taxonomy ids= 6656 -2 allBelow=true;
Writing to: /media/sam/8TB_HDD/20230726-mmag-read_extraction/CH05-07.trimmed.R1-MEGAN_summarized_reads-arthropoda_NA.fasta
Executing: collapse rank='Phylum';select rank='Phylum';
Executing: show window=ExtractReads;
Executing: set summarized=true;
Executing: extract what=reads outdir='/media/sam/8TB_HDD/20230726-mmag-read_extraction' outfile='CH05-07.trimmed.R2-MEGAN_summarized_reads-arthropoda_NA.fasta' data=Taxonomy ids= 6656 -2 allBelow=true;
Writing to: /media/sam/8TB_HDD/20230726-mmag-read_extraction/CH05-07.trimmed.R2-MEGAN_summarized_reads-arthropoda_NA.fasta
Info: Number of reads written: 3786890
Info: Command completed (981s): extract what=reads outdir='/media/sam/8TB_HDD/20230726-mmag-read_extraction' outfile='CH05-07.trimmed.R1-MEGAN_summarized_re...
Info: Number of reads written: 3861718
Info: Command completed (964s): extract what=reads outdir='/media/sam/8TB_HDD/20230726-mmag-read_extraction' outfile='CH05-07.trimmed.R2-MEGAN_summarized_re...
Executing: close what=current;
Executing: open file='/media/sam/8TB_HDD/20230702-mmag-daa2rma/CH05-09.trimmed.R1.blastx.meganized.daa.daa2rma.rma6';open file='/media/sam/8TB_HDD/20230702-mmag-daa2rma/CH05-09.trimmed.R2.blastx.meganized.daa.daa2rma.rma6';
Executing: open file='/media/sam/8TB_HDD/20230702-mmag-daa2rma/CH05-09.trimmed.R1.blastx.meganized.daa.daa2rma.rma6' readOnly=false;
Executing: open file='/media/sam/8TB_HDD/20230702-mmag-daa2rma/CH05-09.trimmed.R2.blastx.meganized.daa.daa2rma.rma6' readOnly=false;
Info: Opened file 'CH05-09.trimmed.R1.blastx.meganized.daa.daa2rma.rma6' with 6,539,025 reads
Opened file '/media/sam/8TB_HDD/20230702-mmag-daa2rma/CH05-09.trimmed.R2.blastx.meganized.daa.daa2rma.rma6' with 6,624,320 reads
Executing: close what=current;
Executing: collapse rank='Phylum';select rank='Phylum';
Executing: show window=ExtractReads;
Executing: set summarized=true;
Executing: extract what=reads outdir='/media/sam/8TB_HDD/20230726-mmag-read_extraction' outfile='CH05-09.trimmed.R1-MEGAN_summarized_reads-arthropoda_NA.fasta' data=Taxonomy ids= 6656 -2 allBelow=true;
Writing to: /media/sam/8TB_HDD/20230726-mmag-read_extraction/CH05-09.trimmed.R1-MEGAN_summarized_reads-arthropoda_NA.fasta
Executing: collapse rank='Phylum';select rank='Phylum';
Executing: show window=ExtractReads;
Executing: set summarized=true;
Executing: extract what=reads outdir='/media/sam/8TB_HDD/20230726-mmag-read_extraction' outfile='CH05-09.trimmed.R2-MEGAN_summarized_reads-arthropoda_NA.fasta' data=Taxonomy ids= 6656 -2 allBelow=true;
Writing to: /media/sam/8TB_HDD/20230726-mmag-read_extraction/CH05-09.trimmed.R2-MEGAN_summarized_reads-arthropoda_NA.fasta
Info: Number of reads written: 5263459
Info: Command completed (710s): extract what=reads outdir='/media/sam/8TB_HDD/20230726-mmag-read_extraction' outfile='CH05-09.trimmed.R1-MEGAN_summarized_re...
Info: Number of reads written: 5345726
Info: Command completed (822s): extract what=reads outdir='/media/sam/8TB_HDD/20230726-mmag-read_extraction' outfile='CH05-09.trimmed.R2-MEGAN_summarized_re...
Executing: close what=current;
Executing: open file='/media/sam/8TB_HDD/20230702-mmag-daa2rma/CH05-14.trimmed.R1.blastx.meganized.daa.daa2rma.rma6';open file='/media/sam/8TB_HDD/20230702-mmag-daa2rma/CH05-14.trimmed.R2.blastx.meganized.daa.daa2rma.rma6';
Executing: open file='/media/sam/8TB_HDD/20230702-mmag-daa2rma/CH05-14.trimmed.R1.blastx.meganized.daa.daa2rma.rma6' readOnly=false;
Executing: open file='/media/sam/8TB_HDD/20230702-mmag-daa2rma/CH05-14.trimmed.R2.blastx.meganized.daa.daa2rma.rma6' readOnly=false;
Info: Opened file 'CH05-14.trimmed.R1.blastx.meganized.daa.daa2rma.rma6' with 6,231,795 reads
Opened file '/media/sam/8TB_HDD/20230702-mmag-daa2rma/CH05-14.trimmed.R2.blastx.meganized.daa.daa2rma.rma6' with 6,269,570 reads
Executing: collapse rank='Phylum';select rank='Phylum';
Executing: show window=ExtractReads;
Executing: set summarized=true;
Executing: extract what=reads outdir='/media/sam/8TB_HDD/20230726-mmag-read_extraction' outfile='CH05-14.trimmed.R2-MEGAN_summarized_reads-arthropoda_NA.fasta' data=Taxonomy ids= 6656 -2 allBelow=true;
Writing to: /media/sam/8TB_HDD/20230726-mmag-read_extraction/CH05-14.trimmed.R2-MEGAN_summarized_reads-arthropoda_NA.fasta
Executing: collapse rank='Phylum';select rank='Phylum';
Executing: show window=ExtractReads;
Executing: set summarized=true;
Executing: extract what=reads outdir='/media/sam/8TB_HDD/20230726-mmag-read_extraction' outfile='CH05-14.trimmed.R1-MEGAN_summarized_reads-arthropoda_NA.fasta' data=Taxonomy ids= 6656 -2 allBelow=true;
Writing to: /media/sam/8TB_HDD/20230726-mmag-read_extraction/CH05-14.trimmed.R1-MEGAN_summarized_reads-arthropoda_NA.fasta
Info: Number of reads written: 4806867
Info: Command completed (1459s): extract what=reads outdir='/media/sam/8TB_HDD/20230726-mmag-read_extraction' outfile='CH05-14.trimmed.R2-MEGAN_summarized_r...
Info: Number of reads written: 4770928
Info: Command completed (1449s): extract what=reads outdir='/media/sam/8TB_HDD/20230726-mmag-read_extraction' outfile='CH05-14.trimmed.R1-MEGAN_summarized_r...
Executing: close what=current;
Executing: close what=current;
Executing: open file='/media/sam/8TB_HDD/20230702-mmag-daa2rma/CH05-21.trimmed.R1.blastx.meganized.daa.daa2rma.rma6';open file='/media/sam/8TB_HDD/20230702-mmag-daa2rma/CH05-21.trimmed.R2.blastx.meganized.daa.daa2rma.rma6';
Executing: open file='/media/sam/8TB_HDD/20230702-mmag-daa2rma/CH05-21.trimmed.R1.blastx.meganized.daa.daa2rma.rma6' readOnly=false;
Executing: open file='/media/sam/8TB_HDD/20230702-mmag-daa2rma/CH05-21.trimmed.R2.blastx.meganized.daa.daa2rma.rma6' readOnly=false;
Info: Opened file 'CH05-21.trimmed.R1.blastx.meganized.daa.daa2rma.rma6' with 6,028,642 reads
Opened file '/media/sam/8TB_HDD/20230702-mmag-daa2rma/CH05-21.trimmed.R2.blastx.meganized.daa.daa2rma.rma6' with 6,066,063 reads
Executing: close what=current;
Executing: collapse rank='Phylum';select rank='Phylum';
Executing: show window=ExtractReads;
Executing: set summarized=true;
Executing: extract what=reads outdir='/media/sam/8TB_HDD/20230726-mmag-read_extraction' outfile='CH05-21.trimmed.R1-MEGAN_summarized_reads-arthropoda_NA.fasta' data=Taxonomy ids= 6656 -2 allBelow=true;
Writing to: /media/sam/8TB_HDD/20230726-mmag-read_extraction/CH05-21.trimmed.R1-MEGAN_summarized_reads-arthropoda_NA.fasta
Executing: collapse rank='Phylum';select rank='Phylum';
Executing: show window=ExtractReads;
Executing: set summarized=true;
Executing: extract what=reads outdir='/media/sam/8TB_HDD/20230726-mmag-read_extraction' outfile='CH05-21.trimmed.R2-MEGAN_summarized_reads-arthropoda_NA.fasta' data=Taxonomy ids= 6656 -2 allBelow=true;
Writing to: /media/sam/8TB_HDD/20230726-mmag-read_extraction/CH05-21.trimmed.R2-MEGAN_summarized_reads-arthropoda_NA.fasta
Info: Number of reads written: 4979156
Info: Command completed (671s): extract what=reads outdir='/media/sam/8TB_HDD/20230726-mmag-read_extraction' outfile='CH05-21.trimmed.R1-MEGAN_summarized_re...
Info: Number of reads written: 5018661
Info: Command completed (761s): extract what=reads outdir='/media/sam/8TB_HDD/20230726-mmag-read_extraction' outfile='CH05-21.trimmed.R2-MEGAN_summarized_re...
Executing: close what=current;
Executing: open file='/media/sam/8TB_HDD/20230702-mmag-daa2rma/CH05-29.trimmed.R1.blastx.meganized.daa.daa2rma.rma6';open file='/media/sam/8TB_HDD/20230702-mmag-daa2rma/CH05-29.trimmed.R2.blastx.meganized.daa.daa2rma.rma6';
Executing: open file='/media/sam/8TB_HDD/20230702-mmag-daa2rma/CH05-29.trimmed.R1.blastx.meganized.daa.daa2rma.rma6' readOnly=false;
Executing: open file='/media/sam/8TB_HDD/20230702-mmag-daa2rma/CH05-29.trimmed.R2.blastx.meganized.daa.daa2rma.rma6' readOnly=false;
Info: Opened file 'CH05-29.trimmed.R1.blastx.meganized.daa.daa2rma.rma6' with 9,995,972 reads
Opened file '/media/sam/8TB_HDD/20230702-mmag-daa2rma/CH05-29.trimmed.R2.blastx.meganized.daa.daa2rma.rma6' with 10,022,751 reads
Executing: close what=current;
Executing: collapse rank='Phylum';select rank='Phylum';
Executing: show window=ExtractReads;
Executing: set summarized=true;
Executing: extract what=reads outdir='/media/sam/8TB_HDD/20230726-mmag-read_extraction' outfile='CH05-29.trimmed.R1-MEGAN_summarized_reads-arthropoda_NA.fasta' data=Taxonomy ids= 6656 -2 allBelow=true;
Writing to: /media/sam/8TB_HDD/20230726-mmag-read_extraction/CH05-29.trimmed.R1-MEGAN_summarized_reads-arthropoda_NA.fasta
Executing: collapse rank='Phylum';select rank='Phylum';
Executing: show window=ExtractReads;
Executing: set summarized=true;
Executing: extract what=reads outdir='/media/sam/8TB_HDD/20230726-mmag-read_extraction' outfile='CH05-29.trimmed.R2-MEGAN_summarized_reads-arthropoda_NA.fasta' data=Taxonomy ids= 6656 -2 allBelow=true;
Writing to: /media/sam/8TB_HDD/20230726-mmag-read_extraction/CH05-29.trimmed.R2-MEGAN_summarized_reads-arthropoda_NA.fasta
Info: Number of reads written: 4619617
Info: Command completed (2094s): extract what=reads outdir='/media/sam/8TB_HDD/20230726-mmag-read_extraction' outfile='CH05-29.trimmed.R1-MEGAN_summarized_r...
Info: Number of reads written: 4601266
Info: Command completed (2232s): extract what=reads outdir='/media/sam/8TB_HDD/20230726-mmag-read_extraction' outfile='CH05-29.trimmed.R2-MEGAN_summarized_r...
Executing: close what=current;
Executing: open file='/media/sam/8TB_HDD/20230702-mmag-daa2rma/CH07-04.trimmed.R1.blastx.meganized.daa.daa2rma.rma6';open file='/media/sam/8TB_HDD/20230702-mmag-daa2rma/CH07-04.trimmed.R2.blastx.meganized.daa.daa2rma.rma6';
Executing: open file='/media/sam/8TB_HDD/20230702-mmag-daa2rma/CH07-04.trimmed.R1.blastx.meganized.daa.daa2rma.rma6' readOnly=false;
Executing: open file='/media/sam/8TB_HDD/20230702-mmag-daa2rma/CH07-04.trimmed.R2.blastx.meganized.daa.daa2rma.rma6' readOnly=false;
Info: Opened file 'CH07-04.trimmed.R1.blastx.meganized.daa.daa2rma.rma6' with 3,547,598 reads
Opened file '/media/sam/8TB_HDD/20230702-mmag-daa2rma/CH07-04.trimmed.R2.blastx.meganized.daa.daa2rma.rma6' with 3,572,438 reads
Executing: close what=current;
Executing: collapse rank='Phylum';select rank='Phylum';
Executing: show window=ExtractReads;
Executing: set summarized=true;
Executing: extract what=reads outdir='/media/sam/8TB_HDD/20230726-mmag-read_extraction' outfile='CH07-04.trimmed.R1-MEGAN_summarized_reads-arthropoda_NA.fasta' data=Taxonomy ids= 6656 -2 allBelow=true;
Writing to: /media/sam/8TB_HDD/20230726-mmag-read_extraction/CH07-04.trimmed.R1-MEGAN_summarized_reads-arthropoda_NA.fasta
Executing: collapse rank='Phylum';select rank='Phylum';
Executing: show window=ExtractReads;
Executing: set summarized=true;
Executing: extract what=reads outdir='/media/sam/8TB_HDD/20230726-mmag-read_extraction' outfile='CH07-04.trimmed.R2-MEGAN_summarized_reads-arthropoda_NA.fasta' data=Taxonomy ids= 6656 -2 allBelow=true;
Writing to: /media/sam/8TB_HDD/20230726-mmag-read_extraction/CH07-04.trimmed.R2-MEGAN_summarized_reads-arthropoda_NA.fasta
Info: Number of reads written: 2535726
Info: Command completed (423s): extract what=reads outdir='/media/sam/8TB_HDD/20230726-mmag-read_extraction' outfile='CH07-04.trimmed.R1-MEGAN_summarized_re...
Info: Number of reads written: 2561646
Info: Command completed (485s): extract what=reads outdir='/media/sam/8TB_HDD/20230726-mmag-read_extraction' outfile='CH07-04.trimmed.R2-MEGAN_summarized_re...
Executing: close what=current;
Executing: open file='/media/sam/8TB_HDD/20230702-mmag-daa2rma/CH07-06.trimmed.R1.blastx.meganized.daa.daa2rma.rma6';open file='/media/sam/8TB_HDD/20230702-mmag-daa2rma/CH07-06.trimmed.R2.blastx.meganized.daa.daa2rma.rma6';
Executing: open file='/media/sam/8TB_HDD/20230702-mmag-daa2rma/CH07-06.trimmed.R1.blastx.meganized.daa.daa2rma.rma6' readOnly=false;
Executing: open file='/media/sam/8TB_HDD/20230702-mmag-daa2rma/CH07-06.trimmed.R2.blastx.meganized.daa.daa2rma.rma6' readOnly=false;
Info: Opened file 'CH07-06.trimmed.R1.blastx.meganized.daa.daa2rma.rma6' with 5,278,696 reads
Opened file '/media/sam/8TB_HDD/20230702-mmag-daa2rma/CH07-06.trimmed.R2.blastx.meganized.daa.daa2rma.rma6' with 5,326,628 reads
Executing: close what=current;
Executing: collapse rank='Phylum';select rank='Phylum';
Executing: show window=ExtractReads;
Executing: set summarized=true;
Executing: extract what=reads outdir='/media/sam/8TB_HDD/20230726-mmag-read_extraction' outfile='CH07-06.trimmed.R1-MEGAN_summarized_reads-arthropoda_NA.fasta' data=Taxonomy ids= 6656 -2 allBelow=true;
Writing to: /media/sam/8TB_HDD/20230726-mmag-read_extraction/CH07-06.trimmed.R1-MEGAN_summarized_reads-arthropoda_NA.fasta
Executing: collapse rank='Phylum';select rank='Phylum';
Executing: show window=ExtractReads;
Executing: set summarized=true;
Executing: extract what=reads outdir='/media/sam/8TB_HDD/20230726-mmag-read_extraction' outfile='CH07-06.trimmed.R2-MEGAN_summarized_reads-arthropoda_NA.fasta' data=Taxonomy ids= 6656 -2 allBelow=true;
Writing to: /media/sam/8TB_HDD/20230726-mmag-read_extraction/CH07-06.trimmed.R2-MEGAN_summarized_reads-arthropoda_NA.fasta
Info: Number of reads written: 3972716
Info: Command completed (612s): extract what=reads outdir='/media/sam/8TB_HDD/20230726-mmag-read_extraction' outfile='CH07-06.trimmed.R1-MEGAN_summarized_re...
Info: Number of reads written: 4018942
Info: Command completed (711s): extract what=reads outdir='/media/sam/8TB_HDD/20230726-mmag-read_extraction' outfile='CH07-06.trimmed.R2-MEGAN_summarized_re...
Executing: close what=current;
Executing: open file='/media/sam/8TB_HDD/20230702-mmag-daa2rma/CH07-08.trimmed.R1.blastx.meganized.daa.daa2rma.rma6';open file='/media/sam/8TB_HDD/20230702-mmag-daa2rma/CH07-08.trimmed.R2.blastx.meganized.daa.daa2rma.rma6';
Executing: open file='/media/sam/8TB_HDD/20230702-mmag-daa2rma/CH07-08.trimmed.R1.blastx.meganized.daa.daa2rma.rma6' readOnly=false;
Executing: open file='/media/sam/8TB_HDD/20230702-mmag-daa2rma/CH07-08.trimmed.R2.blastx.meganized.daa.daa2rma.rma6' readOnly=false;
Info: Opened file 'CH07-08.trimmed.R1.blastx.meganized.daa.daa2rma.rma6' with 9,400,852 reads
Opened file '/media/sam/8TB_HDD/20230702-mmag-daa2rma/CH07-08.trimmed.R2.blastx.meganized.daa.daa2rma.rma6' with 9,461,735 reads
Executing: close what=current;
Executing: collapse rank='Phylum';select rank='Phylum';
Executing: show window=ExtractReads;
Executing: set summarized=true;
Executing: extract what=reads outdir='/media/sam/8TB_HDD/20230726-mmag-read_extraction' outfile='CH07-08.trimmed.R1-MEGAN_summarized_reads-arthropoda_NA.fasta' data=Taxonomy ids= 6656 -2 allBelow=true;
Writing to: /media/sam/8TB_HDD/20230726-mmag-read_extraction/CH07-08.trimmed.R1-MEGAN_summarized_reads-arthropoda_NA.fasta
Executing: collapse rank='Phylum';select rank='Phylum';
Executing: show window=ExtractReads;
Executing: set summarized=true;
Executing: extract what=reads outdir='/media/sam/8TB_HDD/20230726-mmag-read_extraction' outfile='CH07-08.trimmed.R2-MEGAN_summarized_reads-arthropoda_NA.fasta' data=Taxonomy ids= 6656 -2 allBelow=true;
Writing to: /media/sam/8TB_HDD/20230726-mmag-read_extraction/CH07-08.trimmed.R2-MEGAN_summarized_reads-arthropoda_NA.fasta
Info: Number of reads written: 7464558
Info: Command completed (1789s): extract what=reads outdir='/media/sam/8TB_HDD/20230726-mmag-read_extraction' outfile='CH07-08.trimmed.R1-MEGAN_summarized_r...
Info: Number of reads written: 7525640
Info: Command completed (1799s): extract what=reads outdir='/media/sam/8TB_HDD/20230726-mmag-read_extraction' outfile='CH07-08.trimmed.R2-MEGAN_summarized_r...
Executing: close what=current;
Executing: open file='/media/sam/8TB_HDD/20230702-mmag-daa2rma/CH07-11.trimmed.R1.blastx.meganized.daa.daa2rma.rma6';open file='/media/sam/8TB_HDD/20230702-mmag-daa2rma/CH07-11.trimmed.R2.blastx.meganized.daa.daa2rma.rma6';
Executing: open file='/media/sam/8TB_HDD/20230702-mmag-daa2rma/CH07-11.trimmed.R1.blastx.meganized.daa.daa2rma.rma6' readOnly=false;
Executing: open file='/media/sam/8TB_HDD/20230702-mmag-daa2rma/CH07-11.trimmed.R2.blastx.meganized.daa.daa2rma.rma6' readOnly=false;
Info: Opened file 'CH07-11.trimmed.R1.blastx.meganized.daa.daa2rma.rma6' with 7,075,583 reads
Opened file '/media/sam/8TB_HDD/20230702-mmag-daa2rma/CH07-11.trimmed.R2.blastx.meganized.daa.daa2rma.rma6' with 7,159,883 reads
Executing: close what=current;
Executing: collapse rank='Phylum';select rank='Phylum';
Executing: show window=ExtractReads;
Executing: set summarized=true;
Executing: extract what=reads outdir='/media/sam/8TB_HDD/20230726-mmag-read_extraction' outfile='CH07-11.trimmed.R1-MEGAN_summarized_reads-arthropoda_NA.fasta' data=Taxonomy ids= 6656 -2 allBelow=true;
Writing to: /media/sam/8TB_HDD/20230726-mmag-read_extraction/CH07-11.trimmed.R1-MEGAN_summarized_reads-arthropoda_NA.fasta
Executing: collapse rank='Phylum';select rank='Phylum';
Executing: show window=ExtractReads;
Executing: set summarized=true;
Executing: extract what=reads outdir='/media/sam/8TB_HDD/20230726-mmag-read_extraction' outfile='CH07-11.trimmed.R2-MEGAN_summarized_reads-arthropoda_NA.fasta' data=Taxonomy ids= 6656 -2 allBelow=true;
Writing to: /media/sam/8TB_HDD/20230726-mmag-read_extraction/CH07-11.trimmed.R2-MEGAN_summarized_reads-arthropoda_NA.fasta
Info: Number of reads written: 5631360
Info: Command completed (858s): extract what=reads outdir='/media/sam/8TB_HDD/20230726-mmag-read_extraction' outfile='CH07-11.trimmed.R1-MEGAN_summarized_re...
Info: Number of reads written: 5714377
Info: Command completed (966s): extract what=reads outdir='/media/sam/8TB_HDD/20230726-mmag-read_extraction' outfile='CH07-11.trimmed.R2-MEGAN_summarized_re...
Executing: close what=current;
Executing: open file='/media/sam/8TB_HDD/20230702-mmag-daa2rma/CH07-24.trimmed.R1.blastx.meganized.daa.daa2rma.rma6';open file='/media/sam/8TB_HDD/20230702-mmag-daa2rma/CH07-24.trimmed.R2.blastx.meganized.daa.daa2rma.rma6';
Executing: open file='/media/sam/8TB_HDD/20230702-mmag-daa2rma/CH07-24.trimmed.R1.blastx.meganized.daa.daa2rma.rma6' readOnly=false;
Executing: open file='/media/sam/8TB_HDD/20230702-mmag-daa2rma/CH07-24.trimmed.R2.blastx.meganized.daa.daa2rma.rma6' readOnly=false;
Info: Opened file 'CH07-24.trimmed.R1.blastx.meganized.daa.daa2rma.rma6' with 7,083,899 reads
Opened file '/media/sam/8TB_HDD/20230702-mmag-daa2rma/CH07-24.trimmed.R2.blastx.meganized.daa.daa2rma.rma6' with 7,114,414 reads
Executing: close what=current;
Executing: collapse rank='Phylum';select rank='Phylum';
Executing: show window=ExtractReads;
Executing: set summarized=true;
Executing: extract what=reads outdir='/media/sam/8TB_HDD/20230726-mmag-read_extraction' outfile='CH07-24.trimmed.R1-MEGAN_summarized_reads-arthropoda_NA.fasta' data=Taxonomy ids= 6656 -2 allBelow=true;
Writing to: /media/sam/8TB_HDD/20230726-mmag-read_extraction/CH07-24.trimmed.R1-MEGAN_summarized_reads-arthropoda_NA.fasta
Executing: collapse rank='Phylum';select rank='Phylum';
Executing: show window=ExtractReads;
Executing: set summarized=true;
Executing: extract what=reads outdir='/media/sam/8TB_HDD/20230726-mmag-read_extraction' outfile='CH07-24.trimmed.R2-MEGAN_summarized_reads-arthropoda_NA.fasta' data=Taxonomy ids= 6656 -2 allBelow=true;
Writing to: /media/sam/8TB_HDD/20230726-mmag-read_extraction/CH07-24.trimmed.R2-MEGAN_summarized_reads-arthropoda_NA.fasta
Info: Number of reads written: 5596765
Info: Command completed (1332s): extract what=reads outdir='/media/sam/8TB_HDD/20230726-mmag-read_extraction' outfile='CH07-24.trimmed.R1-MEGAN_summarized_r...
Info: Number of reads written: 5631813
Info: Command completed (1392s): extract what=reads outdir='/media/sam/8TB_HDD/20230726-mmag-read_extraction' outfile='CH07-24.trimmed.R2-MEGAN_summarized_r...
Executing: close what=current;
Executing: open file='/media/sam/8TB_HDD/20230702-mmag-daa2rma/CH09-02.trimmed.R1.blastx.meganized.daa.daa2rma.rma6';open file='/media/sam/8TB_HDD/20230702-mmag-daa2rma/CH09-02.trimmed.R2.blastx.meganized.daa.daa2rma.rma6';
Executing: open file='/media/sam/8TB_HDD/20230702-mmag-daa2rma/CH09-02.trimmed.R1.blastx.meganized.daa.daa2rma.rma6' readOnly=false;
Executing: open file='/media/sam/8TB_HDD/20230702-mmag-daa2rma/CH09-02.trimmed.R2.blastx.meganized.daa.daa2rma.rma6' readOnly=false;
Info: Opened file 'CH09-02.trimmed.R1.blastx.meganized.daa.daa2rma.rma6' with 4,240,072 reads
Opened file '/media/sam/8TB_HDD/20230702-mmag-daa2rma/CH09-02.trimmed.R2.blastx.meganized.daa.daa2rma.rma6' with 4,270,268 reads
Executing: close what=current;
Executing: collapse rank='Phylum';select rank='Phylum';
Executing: show window=ExtractReads;
Executing: set summarized=true;
Executing: extract what=reads outdir='/media/sam/8TB_HDD/20230726-mmag-read_extraction' outfile='CH09-02.trimmed.R1-MEGAN_summarized_reads-arthropoda_NA.fasta' data=Taxonomy ids= 6656 -2 allBelow=true;
Writing to: /media/sam/8TB_HDD/20230726-mmag-read_extraction/CH09-02.trimmed.R1-MEGAN_summarized_reads-arthropoda_NA.fasta
Executing: collapse rank='Phylum';select rank='Phylum';
Executing: show window=ExtractReads;
Executing: set summarized=true;
Executing: extract what=reads outdir='/media/sam/8TB_HDD/20230726-mmag-read_extraction' outfile='CH09-02.trimmed.R2-MEGAN_summarized_reads-arthropoda_NA.fasta' data=Taxonomy ids= 6656 -2 allBelow=true;
Writing to: /media/sam/8TB_HDD/20230726-mmag-read_extraction/CH09-02.trimmed.R2-MEGAN_summarized_reads-arthropoda_NA.fasta
Info: Number of reads written: 3398414
Info: Command completed (555s): extract what=reads outdir='/media/sam/8TB_HDD/20230726-mmag-read_extraction' outfile='CH09-02.trimmed.R1-MEGAN_summarized_re...
Info: Number of reads written: 3428373
Info: Command completed (600s): extract what=reads outdir='/media/sam/8TB_HDD/20230726-mmag-read_extraction' outfile='CH09-02.trimmed.R2-MEGAN_summarized_re...
Executing: close what=current;
Executing: open file='/media/sam/8TB_HDD/20230702-mmag-daa2rma/CH09-13.trimmed.R1.blastx.meganized.daa.daa2rma.rma6';open file='/media/sam/8TB_HDD/20230702-mmag-daa2rma/CH09-13.trimmed.R2.blastx.meganized.daa.daa2rma.rma6';
Executing: open file='/media/sam/8TB_HDD/20230702-mmag-daa2rma/CH09-13.trimmed.R1.blastx.meganized.daa.daa2rma.rma6' readOnly=false;
Executing: open file='/media/sam/8TB_HDD/20230702-mmag-daa2rma/CH09-13.trimmed.R2.blastx.meganized.daa.daa2rma.rma6' readOnly=false;
Info: Opened file 'CH09-13.trimmed.R1.blastx.meganized.daa.daa2rma.rma6' with 6,048,342 reads
Opened file '/media/sam/8TB_HDD/20230702-mmag-daa2rma/CH09-13.trimmed.R2.blastx.meganized.daa.daa2rma.rma6' with 6,141,769 reads
Executing: close what=current;
Executing: collapse rank='Phylum';select rank='Phylum';
Executing: show window=ExtractReads;
Executing: set summarized=true;
Executing: extract what=reads outdir='/media/sam/8TB_HDD/20230726-mmag-read_extraction' outfile='CH09-13.trimmed.R1-MEGAN_summarized_reads-arthropoda_NA.fasta' data=Taxonomy ids= 6656 -2 allBelow=true;
Writing to: /media/sam/8TB_HDD/20230726-mmag-read_extraction/CH09-13.trimmed.R1-MEGAN_summarized_reads-arthropoda_NA.fasta
Executing: collapse rank='Phylum';select rank='Phylum';
Executing: show window=ExtractReads;
Executing: set summarized=true;
Executing: extract what=reads outdir='/media/sam/8TB_HDD/20230726-mmag-read_extraction' outfile='CH09-13.trimmed.R2-MEGAN_summarized_reads-arthropoda_NA.fasta' data=Taxonomy ids= 6656 -2 allBelow=true;
Writing to: /media/sam/8TB_HDD/20230726-mmag-read_extraction/CH09-13.trimmed.R2-MEGAN_summarized_reads-arthropoda_NA.fasta
Info: Number of reads written: 3705203
Info: Command completed (950s): extract what=reads outdir='/media/sam/8TB_HDD/20230726-mmag-read_extraction' outfile='CH09-13.trimmed.R1-MEGAN_summarized_re...
Info: Number of reads written: 3755026
Info: Command completed (944s): extract what=reads outdir='/media/sam/8TB_HDD/20230726-mmag-read_extraction' outfile='CH09-13.trimmed.R2-MEGAN_summarized_re...
Executing: close what=current;
Executing: open file='/media/sam/8TB_HDD/20230702-mmag-daa2rma/CH09-28.trimmed.R1.blastx.meganized.daa.daa2rma.rma6';open file='/media/sam/8TB_HDD/20230702-mmag-daa2rma/CH09-28.trimmed.R2.blastx.meganized.daa.daa2rma.rma6';
Executing: open file='/media/sam/8TB_HDD/20230702-mmag-daa2rma/CH09-28.trimmed.R1.blastx.meganized.daa.daa2rma.rma6' readOnly=false;
Executing: open file='/media/sam/8TB_HDD/20230702-mmag-daa2rma/CH09-28.trimmed.R2.blastx.meganized.daa.daa2rma.rma6' readOnly=false;
Info: Opened file 'CH09-28.trimmed.R1.blastx.meganized.daa.daa2rma.rma6' with 4,269,168 reads
Opened file '/media/sam/8TB_HDD/20230702-mmag-daa2rma/CH09-28.trimmed.R2.blastx.meganized.daa.daa2rma.rma6' with 4,375,089 reads
Executing: close what=current;
Executing: collapse rank='Phylum';select rank='Phylum';
Executing: show window=ExtractReads;
Executing: set summarized=true;
Executing: extract what=reads outdir='/media/sam/8TB_HDD/20230726-mmag-read_extraction' outfile='CH09-28.trimmed.R1-MEGAN_summarized_reads-arthropoda_NA.fasta' data=Taxonomy ids= 6656 -2 allBelow=true;
Writing to: /media/sam/8TB_HDD/20230726-mmag-read_extraction/CH09-28.trimmed.R1-MEGAN_summarized_reads-arthropoda_NA.fasta
Executing: collapse rank='Phylum';select rank='Phylum';
Executing: show window=ExtractReads;
Executing: set summarized=true;
Executing: extract what=reads outdir='/media/sam/8TB_HDD/20230726-mmag-read_extraction' outfile='CH09-28.trimmed.R2-MEGAN_summarized_reads-arthropoda_NA.fasta' data=Taxonomy ids= 6656 -2 allBelow=true;
Writing to: /media/sam/8TB_HDD/20230726-mmag-read_extraction/CH09-28.trimmed.R2-MEGAN_summarized_reads-arthropoda_NA.fasta
Info: Number of reads written: 3248370
Info: Command completed (616s): extract what=reads outdir='/media/sam/8TB_HDD/20230726-mmag-read_extraction' outfile='CH09-28.trimmed.R1-MEGAN_summarized_re...
Info: Number of reads written: 3350703
Info: Command completed (635s): extract what=reads outdir='/media/sam/8TB_HDD/20230726-mmag-read_extraction' outfile='CH09-28.trimmed.R2-MEGAN_summarized_re...
Executing: close what=current;
Executing: open file='/media/sam/8TB_HDD/20230702-mmag-daa2rma/CH10-08.trimmed.R1.blastx.meganized.daa.daa2rma.rma6';open file='/media/sam/8TB_HDD/20230702-mmag-daa2rma/CH10-08.trimmed.R2.blastx.meganized.daa.daa2rma.rma6';
Executing: open file='/media/sam/8TB_HDD/20230702-mmag-daa2rma/CH10-08.trimmed.R1.blastx.meganized.daa.daa2rma.rma6' readOnly=false;
Executing: open file='/media/sam/8TB_HDD/20230702-mmag-daa2rma/CH10-08.trimmed.R2.blastx.meganized.daa.daa2rma.rma6' readOnly=false;
Info: Opened file 'CH10-08.trimmed.R1.blastx.meganized.daa.daa2rma.rma6' with 5,649,168 reads
Opened file '/media/sam/8TB_HDD/20230702-mmag-daa2rma/CH10-08.trimmed.R2.blastx.meganized.daa.daa2rma.rma6' with 5,681,258 reads
Executing: close what=current;
Executing: collapse rank='Phylum';select rank='Phylum';
Executing: show window=ExtractReads;
Executing: set summarized=true;
Executing: extract what=reads outdir='/media/sam/8TB_HDD/20230726-mmag-read_extraction' outfile='CH10-08.trimmed.R1-MEGAN_summarized_reads-arthropoda_NA.fasta' data=Taxonomy ids= 6656 -2 allBelow=true;
Writing to: /media/sam/8TB_HDD/20230726-mmag-read_extraction/CH10-08.trimmed.R1-MEGAN_summarized_reads-arthropoda_NA.fasta
Executing: collapse rank='Phylum';select rank='Phylum';
Executing: show window=ExtractReads;
Executing: set summarized=true;
Executing: extract what=reads outdir='/media/sam/8TB_HDD/20230726-mmag-read_extraction' outfile='CH10-08.trimmed.R2-MEGAN_summarized_reads-arthropoda_NA.fasta' data=Taxonomy ids= 6656 -2 allBelow=true;
Writing to: /media/sam/8TB_HDD/20230726-mmag-read_extraction/CH10-08.trimmed.R2-MEGAN_summarized_reads-arthropoda_NA.fasta
Info: Number of reads written: 4347630
Info: Command completed (642s): extract what=reads outdir='/media/sam/8TB_HDD/20230726-mmag-read_extraction' outfile='CH10-08.trimmed.R1-MEGAN_summarized_re...
Info: Number of reads written: 4378247
Info: Command completed (721s): extract what=reads outdir='/media/sam/8TB_HDD/20230726-mmag-read_extraction' outfile='CH10-08.trimmed.R2-MEGAN_summarized_re...
Executing: close what=current;
Executing: open file='/media/sam/8TB_HDD/20230702-mmag-daa2rma/CH10-11.trimmed.R1.blastx.meganized.daa.daa2rma.rma6';open file='/media/sam/8TB_HDD/20230702-mmag-daa2rma/CH10-11.trimmed.R2.blastx.meganized.daa.daa2rma.rma6';
Executing: open file='/media/sam/8TB_HDD/20230702-mmag-daa2rma/CH10-11.trimmed.R1.blastx.meganized.daa.daa2rma.rma6' readOnly=false;
Executing: open file='/media/sam/8TB_HDD/20230702-mmag-daa2rma/CH10-11.trimmed.R2.blastx.meganized.daa.daa2rma.rma6' readOnly=false;
Info: Opened file 'CH10-11.trimmed.R1.blastx.meganized.daa.daa2rma.rma6' with 5,343,597 reads
Opened file '/media/sam/8TB_HDD/20230702-mmag-daa2rma/CH10-11.trimmed.R2.blastx.meganized.daa.daa2rma.rma6' with 5,430,503 reads
Executing: close what=current;
Executing: collapse rank='Phylum';select rank='Phylum';
Executing: show window=ExtractReads;
Executing: set summarized=true;
Executing: extract what=reads outdir='/media/sam/8TB_HDD/20230726-mmag-read_extraction' outfile='CH10-11.trimmed.R1-MEGAN_summarized_reads-arthropoda_NA.fasta' data=Taxonomy ids= 6656 -2 allBelow=true;
Writing to: /media/sam/8TB_HDD/20230726-mmag-read_extraction/CH10-11.trimmed.R1-MEGAN_summarized_reads-arthropoda_NA.fasta
Executing: collapse rank='Phylum';select rank='Phylum';
Executing: show window=ExtractReads;
Executing: set summarized=true;
Executing: extract what=reads outdir='/media/sam/8TB_HDD/20230726-mmag-read_extraction' outfile='CH10-11.trimmed.R2-MEGAN_summarized_reads-arthropoda_NA.fasta' data=Taxonomy ids= 6656 -2 allBelow=true;
Writing to: /media/sam/8TB_HDD/20230726-mmag-read_extraction/CH10-11.trimmed.R2-MEGAN_summarized_reads-arthropoda_NA.fasta
Info: Number of reads written: 4238853
Info: Command completed (902s): extract what=reads outdir='/media/sam/8TB_HDD/20230726-mmag-read_extraction' outfile='CH10-11.trimmed.R1-MEGAN_summarized_re...
Info: Number of reads written: 4322920
Info: Command completed (916s): extract what=reads outdir='/media/sam/8TB_HDD/20230726-mmag-read_extraction' outfile='CH10-11.trimmed.R2-MEGAN_summarized_re...
Executing: close what=current;