Warning: the current version of HISAT2 (2.1.0) is older than the version (2.2.0) used to build the index.
         Users are strongly recommended to update HISAT2 to the latest version.
Warning: the current version of HISAT2 (2.1.0) is older than the version (2.2.0) used to build the index.
         Users are strongly recommended to update HISAT2 to the latest version.
24285839 reads; of these:
  24285839 (100.00%) were paired; of these:
    13927763 (57.35%) aligned concordantly 0 times
    9958985 (41.01%) aligned concordantly exactly 1 time
    399091 (1.64%) aligned concordantly >1 times
    ----
    13927763 pairs aligned concordantly 0 times; of these:
      4843850 (34.78%) aligned discordantly 1 time
    ----
    9083913 pairs aligned 0 times concordantly or discordantly; of these:
      18167826 mates make up the pairs; of these:
        10821938 (59.57%) aligned 0 times
        6681485 (36.78%) aligned exactly 1 time
        664403 (3.66%) aligned >1 times
77.72% overall alignment rate