Warning: the current version of HISAT2 (2.1.0) is older than the version (2.2.0) used to build the index.
         Users are strongly recommended to update HISAT2 to the latest version.
Warning: the current version of HISAT2 (2.1.0) is older than the version (2.2.0) used to build the index.
         Users are strongly recommended to update HISAT2 to the latest version.
28776838 reads; of these:
  28776838 (100.00%) were paired; of these:
    16354385 (56.83%) aligned concordantly 0 times
    11914281 (41.40%) aligned concordantly exactly 1 time
    508172 (1.77%) aligned concordantly >1 times
    ----
    16354385 pairs aligned concordantly 0 times; of these:
      5295580 (32.38%) aligned discordantly 1 time
    ----
    11058805 pairs aligned 0 times concordantly or discordantly; of these:
      22117610 mates make up the pairs; of these:
        13810936 (62.44%) aligned 0 times
        7505328 (33.93%) aligned exactly 1 time
        801346 (3.62%) aligned >1 times
76.00% overall alignment rate