Warning: the current version of HISAT2 (2.1.0) is older than the version (2.2.0) used to build the index.
         Users are strongly recommended to update HISAT2 to the latest version.
Warning: the current version of HISAT2 (2.1.0) is older than the version (2.2.0) used to build the index.
         Users are strongly recommended to update HISAT2 to the latest version.
17954806 reads; of these:
  17954806 (100.00%) were paired; of these:
    9573542 (53.32%) aligned concordantly 0 times
    8038197 (44.77%) aligned concordantly exactly 1 time
    343067 (1.91%) aligned concordantly >1 times
    ----
    9573542 pairs aligned concordantly 0 times; of these:
      2676620 (27.96%) aligned discordantly 1 time
    ----
    6896922 pairs aligned 0 times concordantly or discordantly; of these:
      13793844 mates make up the pairs; of these:
        8898822 (64.51%) aligned 0 times
        4425365 (32.08%) aligned exactly 1 time
        469657 (3.40%) aligned >1 times
75.22% overall alignment rate