Warning: the current version of HISAT2 (2.1.0) is older than the version (2.2.0) used to build the index.
         Users are strongly recommended to update HISAT2 to the latest version.
Warning: the current version of HISAT2 (2.1.0) is older than the version (2.2.0) used to build the index.
         Users are strongly recommended to update HISAT2 to the latest version.
15900108 reads; of these:
  15900108 (100.00%) were paired; of these:
    9062206 (56.99%) aligned concordantly 0 times
    6535558 (41.10%) aligned concordantly exactly 1 time
    302344 (1.90%) aligned concordantly >1 times
    ----
    9062206 pairs aligned concordantly 0 times; of these:
      2219784 (24.49%) aligned discordantly 1 time
    ----
    6842422 pairs aligned 0 times concordantly or discordantly; of these:
      13684844 mates make up the pairs; of these:
        9754175 (71.28%) aligned 0 times
        3562573 (26.03%) aligned exactly 1 time
        368096 (2.69%) aligned >1 times
69.33% overall alignment rate