Generating MD5 checksum for /gscratch/srlab/sam/data/P_verrucosa/RNAseq/E8_R1.fastp-trim.20230215.fq.gz...
1ce9ecd8ed14fa4453a0485fb2e1e203  /gscratch/srlab/sam/data/P_verrucosa/RNAseq/E8_R1.fastp-trim.20230215.fq.gz

Running DIAMOND BLASTx on /gscratch/srlab/sam/data/P_verrucosa/RNAseq/E8_R1.fastp-trim.20230215.fq.gz.

diamond v2.1.1.155 (C) Max Planck Society for the Advancement of Science
Documentation, support and updates available at http://www.diamondsearch.org
Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021)

#CPU threads: 40
Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1)
Temporary directory: 
Percentage range of top alignment score to report hits: 5
Opening the database...  [0.323s]
Database: /gscratch/srlab/blastdbs/20230215-ncbi-nr/20230215-ncbi-nr.dmnd (type: Diamond database, sequences: 526308523, letters: 207134680681)
Block size = 15000000000
Opening the input file...  [0.645s]
Opening the output file...  [0.641s]
Loading query sequences...  [72.288s]
Masking queries...  [18.435s]
Algorithm: Double-indexed
Building query histograms...  [16.457s]
Loading reference sequences...  [31.95s]
Masking reference...  [31.997s]
Initializing dictionary...  [0.078s]
Initializing temporary storage...  [0.007s]
Building reference histograms...  [32.867s]
Allocating buffers...  [0.001s]
Processing query block 1, reference block 1/14, shape 1/2, index chunk 1/4.
Building reference seed array...  [10.664s]
Building query seed array...  [2.002s]
Computing hash join...  [6.658s]
Masking low complexity seeds...  [0.237s]
Searching alignments...  [76.139s]
Deallocating memory...  [0s]
Processing query block 1, reference block 1/14, shape 1/2, index chunk 2/4.
Building reference seed array...  [12.461s]
Building query seed array...  [2.866s]
Computing hash join...  [6.627s]
Masking low complexity seeds...  [0.259s]
Searching alignments...  [47.817s]
Deallocating memory...  [0s]
Processing query block 1, reference block 1/14, shape 1/2, index chunk 3/4.
Building reference seed array...  [13.402s]
Building query seed array...  [2.706s]
Computing hash join...  [6.363s]
Masking low complexity seeds...  [0.236s]
Searching alignments...  [41.919s]
Deallocating memory...  [0s]
Processing query block 1, reference block 1/14, shape 1/2, index chunk 4/4.
Building reference seed array...  [10.12s]
Building query seed array...  [2.147s]
Computing hash join...  [6.61s]
Masking low complexity seeds...  [0.243s]
Searching alignments...  [36.906s]
Deallocating memory...  [0s]
Processing query block 1, reference block 1/14, shape 2/2, index chunk 1/4.
Building reference seed array...  [10.065s]
Building query seed array...  [1.973s]
Computing hash join...  [6.386s]
Masking low complexity seeds...  [0.234s]
Searching alignments...  [38.612s]
Deallocating memory...  [0s]
Processing query block 1, reference block 1/14, shape 2/2, index chunk 2/4.
Building reference seed array...  [12.44s]
Building query seed array...  [2.381s]
Computing hash join...  [6.465s]
Masking low complexity seeds...  [0.227s]
Searching alignments...  [29.974s]
Deallocating memory...  [0s]
Processing query block 1, reference block 1/14, shape 2/2, index chunk 3/4.
Building reference seed array...  [13.433s]
Building query seed array...  [2.373s]
Computing hash join...  [6.261s]
Masking low complexity seeds...  [0.229s]
Searching alignments...  [34.108s]
Deallocating memory...  [0s]
Processing query block 1, reference block 1/14, shape 2/2, index chunk 4/4.
Building reference seed array...  [10.237s]
Building query seed array...  [1.933s]
Computing hash join...  [6.308s]
Masking low complexity seeds...  [0.223s]
Searching alignments...  [28.546s]
Deallocating memory...  [0s]
Deallocating buffers...  [1.153s]
Clearing query masking...  [1.713s]
Opening temporary output file...  [0s]
Computing alignments... Loading trace points...  [6.449s]
Sorting trace points...  [1.215s]
Computing alignments...  [30.423s]
Deallocating buffers...  [0.015s]
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Sorting trace points...  [0.883s]
Computing alignments...  [30.387s]
Deallocating buffers...  [0.015s]
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Sorting trace points...  [1.167s]
Computing alignments...  [30.651s]
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Sorting trace points...  [1.131s]
Computing alignments...  [30.528s]
Deallocating buffers...  [0.013s]
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Sorting trace points...  [1.071s]
Computing alignments...  [30.116s]
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Sorting trace points...  [1.129s]
Computing alignments...  [29.857s]
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Sorting trace points...  [0.879s]
Computing alignments...  [30.479s]
Deallocating buffers...  [0.014s]
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Sorting trace points...  [1.174s]
Computing alignments...  [30.07s]
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Computing alignments...  [30.667s]
Deallocating buffers...  [0.014s]
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Sorting trace points...  [1.221s]
Computing alignments...  [31.682s]
Deallocating buffers...  [0.014s]
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Sorting trace points...  [1.252s]
Computing alignments...  [32.109s]
Deallocating buffers...  [0.014s]
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Sorting trace points...  [1.185s]
Computing alignments...  [31.739s]
Deallocating buffers...  [0.013s]
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Sorting trace points...  [1.24s]
Computing alignments...  [31.817s]
Deallocating buffers...  [0.017s]
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Sorting trace points...  [1.356s]
Computing alignments...  [31.915s]
Deallocating buffers...  [0.193s]
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Sorting trace points...  [1.231s]
Computing alignments...  [31.888s]
Deallocating buffers...  [0.017s]
Loading trace points...  [0s]
Sorting trace points...  [1.238s]
Computing alignments...  [35.026s]
Deallocating buffers...  [0.118s]
Loading trace points...  [0s]
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Deallocating reference...  [0.074s]
Loading reference sequences...  [33.969s]
Masking reference...  [31.202s]
Initializing dictionary...  [0.077s]
Initializing temporary storage...  [0.008s]
Building reference histograms...  [31.912s]
Allocating buffers...  [0.001s]
Processing query block 1, reference block 2/14, shape 1/2, index chunk 1/4.
Building reference seed array...  [10.132s]
Building query seed array...  [1.993s]
Computing hash join...  [6.366s]
Masking low complexity seeds...  [0.245s]
Searching alignments...  [71.292s]
Deallocating memory...  [0s]
Processing query block 1, reference block 2/14, shape 1/2, index chunk 2/4.
Building reference seed array...  [12.681s]
Building query seed array...  [2.709s]
Computing hash join...  [6.527s]
Masking low complexity seeds...  [0.241s]
Searching alignments...  [45.902s]
Deallocating memory...  [0s]
Processing query block 1, reference block 2/14, shape 1/2, index chunk 3/4.
Building reference seed array...  [13.947s]
Building query seed array...  [2.603s]
Computing hash join...  [7.191s]
Masking low complexity seeds...  [0.286s]
Searching alignments...  [41.604s]
Deallocating memory...  [0s]
Processing query block 1, reference block 2/14, shape 1/2, index chunk 4/4.
Building reference seed array...  [10.219s]
Building query seed array...  [2.166s]
Computing hash join...  [6.581s]
Masking low complexity seeds...  [0.24s]
Searching alignments...  [37.67s]
Deallocating memory...  [0s]
Processing query block 1, reference block 2/14, shape 2/2, index chunk 1/4.
Building reference seed array...  [10.337s]
Building query seed array...  [1.928s]
Computing hash join...  [6.492s]
Masking low complexity seeds...  [0.229s]
Searching alignments...  [37.377s]
Deallocating memory...  [0s]
Processing query block 1, reference block 2/14, shape 2/2, index chunk 2/4.
Building reference seed array...  [12.587s]
Building query seed array...  [2.212s]
Computing hash join...  [6.321s]
Masking low complexity seeds...  [0.22s]
Searching alignments...  [30.425s]
Deallocating memory...  [0s]
Processing query block 1, reference block 2/14, shape 2/2, index chunk 3/4.
Building reference seed array...  [13.472s]
Building query seed array...  [2.405s]
Computing hash join...  [6.473s]
Masking low complexity seeds...  [0.222s]
Searching alignments...  [32.82s]
Deallocating memory...  [0s]
Processing query block 1, reference block 2/14, shape 2/2, index chunk 4/4.
Building reference seed array...  [10.477s]
Building query seed array...  [1.955s]
Computing hash join...  [6.417s]
Masking low complexity seeds...  [0.212s]
Searching alignments...  [28.12s]
Deallocating memory...  [0s]
Deallocating buffers...  [1.149s]
Clearing query masking...  [1.589s]
Opening temporary output file...  [0s]
Computing alignments... Loading trace points...  [6.194s]
Sorting trace points...  [1.2s]
Computing alignments...  [30.472s]
Deallocating buffers...  [0.014s]
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Sorting trace points...  [1.02s]
Computing alignments...  [30.457s]
Deallocating buffers...  [0.015s]
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Sorting trace points...  [1.183s]
Computing alignments...  [30.653s]
Deallocating buffers...  [0.013s]
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Sorting trace points...  [1.109s]
Computing alignments...  [30.882s]
Deallocating buffers...  [0.026s]
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Sorting trace points...  [1.185s]
Computing alignments...  [30.045s]
Deallocating buffers...  [0.016s]
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Sorting trace points...  [1.13s]
Computing alignments...  [30.116s]
Deallocating buffers...  [0.018s]
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Sorting trace points...  [0.882s]
Computing alignments...  [30.385s]
Deallocating buffers...  [0.014s]
Loading trace points...  [0.052s]
Sorting trace points...  [1.215s]
Computing alignments...  [30.17s]
Deallocating buffers...  [0.089s]
Loading trace points...  [0.001s]
Sorting trace points...  [1.293s]
Computing alignments...  [30.647s]
Deallocating buffers...  [0.116s]
Loading trace points...  [0.078s]
Sorting trace points...  [1.203s]
Computing alignments...  [31.774s]
Deallocating buffers...  [0.013s]
Loading trace points...  [0.052s]
Sorting trace points...  [1.263s]
Computing alignments...  [32.365s]
Deallocating buffers...  [0.041s]
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Sorting trace points...  [1.262s]
Computing alignments...  [31.819s]
Deallocating buffers...  [0.017s]
Loading trace points...  [0.04s]
Sorting trace points...  [1.21s]
Computing alignments...  [31.794s]
Deallocating buffers...  [0.014s]
Loading trace points...  [0.073s]
Sorting trace points...  [1.146s]
Computing alignments...  [31.751s]
Deallocating buffers...  [0.014s]
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Sorting trace points...  [1.26s]
Computing alignments...  [31.948s]
Deallocating buffers...  [0.014s]
Loading trace points...  [0s]
Sorting trace points...  [1.307s]
Computing alignments...  [33.875s]
Deallocating buffers...  [0.324s]
Loading trace points...  [0s]
 [525.838s]
Deallocating reference...  [0.265s]
Loading reference sequences...  [30.689s]
Masking reference...  [31.122s]
Initializing dictionary...  [0.077s]
Initializing temporary storage...  [0.007s]
Building reference histograms...  [32.517s]
Allocating buffers...  [0.001s]
Processing query block 1, reference block 3/14, shape 1/2, index chunk 1/4.
Building reference seed array...  [10.149s]
Building query seed array...  [2.163s]
Computing hash join...  [6.488s]
Masking low complexity seeds...  [0.548s]
Searching alignments...  [74.454s]
Deallocating memory...  [0s]
Processing query block 1, reference block 3/14, shape 1/2, index chunk 2/4.
Building reference seed array...  [12.703s]
Building query seed array...  [2.807s]
Computing hash join...  [5.587s]
Masking low complexity seeds...  [0.257s]
Searching alignments...  [46.729s]
Deallocating memory...  [0s]
Processing query block 1, reference block 3/14, shape 1/2, index chunk 3/4.
Building reference seed array...  [13.501s]
Building query seed array...  [2.663s]
Computing hash join...  [5.758s]
Masking low complexity seeds...  [0.247s]
Searching alignments...  [42.018s]
Deallocating memory...  [0s]
Processing query block 1, reference block 3/14, shape 1/2, index chunk 4/4.
Building reference seed array...  [10.907s]
Building query seed array...  [2.306s]
Computing hash join...  [5.536s]
Masking low complexity seeds...  [0.258s]
Searching alignments...  [38.826s]
Deallocating memory...  [0s]
Processing query block 1, reference block 3/14, shape 2/2, index chunk 1/4.
Building reference seed array...  [10.636s]
Building query seed array...  [1.92s]
Computing hash join...  [5.767s]
Masking low complexity seeds...  [0.243s]
Searching alignments...  [37.838s]
Deallocating memory...  [0s]
Processing query block 1, reference block 3/14, shape 2/2, index chunk 2/4.
Building reference seed array...  [13.041s]
Building query seed array...  [2.311s]
Computing hash join...  [5.715s]
Masking low complexity seeds...  [0.244s]
Searching alignments...  [30.507s]
Deallocating memory...  [0s]
Processing query block 1, reference block 3/14, shape 2/2, index chunk 3/4.
Building reference seed array...  [13.909s]
Building query seed array...  [2.416s]
Computing hash join...  [5.866s]
Masking low complexity seeds...  [0.237s]
Searching alignments...  [34.153s]
Deallocating memory...  [0s]
Processing query block 1, reference block 3/14, shape 2/2, index chunk 4/4.
Building reference seed array...  [10.785s]
Building query seed array...  [2.047s]
Computing hash join...  [5.694s]
Masking low complexity seeds...  [0.219s]
Searching alignments...  [29.437s]
Deallocating memory...  [0s]
Deallocating buffers...  [1.942s]
Clearing query masking...  [1.719s]
Opening temporary output file...  [0s]
Computing alignments... Loading trace points...  [6.137s]
Sorting trace points...  [1.217s]
Computing alignments...  [30.468s]
Deallocating buffers...  [0.016s]
Loading trace points...  [0.076s]
Sorting trace points...  [1.154s]
Computing alignments...  [30.351s]
Deallocating buffers...  [0.016s]
Loading trace points...  [0.085s]
Sorting trace points...  [1.172s]
Computing alignments...  [30.648s]
Deallocating buffers...  [0.013s]
Loading trace points...  [0.062s]
Sorting trace points...  [0.824s]
Computing alignments...  [30.631s]
Deallocating buffers...  [0.014s]
Loading trace points...  [0.065s]
Sorting trace points...  [1.133s]
Computing alignments...  [30.285s]
Deallocating buffers...  [0.013s]
Loading trace points...  [0.093s]
Sorting trace points...  [1.114s]
Computing alignments...  [30.055s]
Deallocating buffers...  [0.013s]
Loading trace points...  [0.33s]
Sorting trace points...  [0.92s]
Computing alignments...  [30.475s]
Deallocating buffers...  [0.014s]
Loading trace points...  [0.061s]
Sorting trace points...  [1.133s]
Computing alignments...  [30.161s]
Deallocating buffers...  [0.016s]
Loading trace points...  [0.112s]
Sorting trace points...  [0.965s]
Computing alignments...  [30.697s]
Deallocating buffers...  [0.015s]
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Sorting trace points...  [0.893s]
Computing alignments...  [31.777s]
Deallocating buffers...  [0.015s]
Loading trace points...  [0.064s]
Sorting trace points...  [1.183s]
Computing alignments...  [32.18s]
Deallocating buffers...  [0.016s]
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Sorting trace points...  [1.077s]
Computing alignments...  [31.816s]
Deallocating buffers...  [0.016s]
Loading trace points...  [0.051s]
Sorting trace points...  [1.101s]
Computing alignments...  [31.943s]
Deallocating buffers...  [0.014s]
Loading trace points...  [0.043s]
Sorting trace points...  [1.385s]
Computing alignments...  [32.389s]
Deallocating buffers...  [0.22s]
Loading trace points...  [0.064s]
Sorting trace points...  [1.26s]
Computing alignments...  [31.856s]
Deallocating buffers...  [0.014s]
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Sorting trace points...  [1.18s]
Computing alignments...  [34.676s]
Deallocating buffers...  [0.045s]
Loading trace points...  [0s]
 [526.078s]
Deallocating reference...  [0.111s]
Loading reference sequences...  [29.795s]
Masking reference...  [30.946s]
Initializing dictionary...  [0.077s]
Initializing temporary storage...  [0.007s]
Building reference histograms...  [33.434s]
Allocating buffers...  [0.001s]
Processing query block 1, reference block 4/14, shape 1/2, index chunk 1/4.
Building reference seed array...  [10.59s]
Building query seed array...  [2.079s]
Computing hash join...  [6.826s]
Masking low complexity seeds...  [0.516s]
Searching alignments...  [74.633s]
Deallocating memory...  [0s]
Processing query block 1, reference block 4/14, shape 1/2, index chunk 2/4.
Building reference seed array...  [12.627s]
Building query seed array...  [2.8s]
Computing hash join...  [7.017s]
Masking low complexity seeds...  [0.274s]
Searching alignments...  [46.482s]
Deallocating memory...  [0s]
Processing query block 1, reference block 4/14, shape 1/2, index chunk 3/4.
Building reference seed array...  [13.908s]
Building query seed array...  [2.691s]
Computing hash join...  [6.483s]
Masking low complexity seeds...  [0.232s]
Searching alignments...  [41.287s]
Deallocating memory...  [0s]
Processing query block 1, reference block 4/14, shape 1/2, index chunk 4/4.
Building reference seed array...  [10.373s]
Building query seed array...  [2.29s]
Computing hash join...  [6.475s]
Masking low complexity seeds...  [0.259s]
Searching alignments...  [36.545s]
Deallocating memory...  [0s]
Processing query block 1, reference block 4/14, shape 2/2, index chunk 1/4.
Building reference seed array...  [10.569s]
Building query seed array...  [2.09s]
Computing hash join...  [6.182s]
Masking low complexity seeds...  [0.221s]
Searching alignments...  [37.644s]
Deallocating memory...  [0s]
Processing query block 1, reference block 4/14, shape 2/2, index chunk 2/4.
Building reference seed array...  [12.09s]
Building query seed array...  [2.181s]
Computing hash join...  [6.112s]
Masking low complexity seeds...  [0.239s]
Searching alignments...  [29.91s]
Deallocating memory...  [0s]
Processing query block 1, reference block 4/14, shape 2/2, index chunk 3/4.
Building reference seed array...  [13.997s]
Building query seed array...  [2.393s]
Computing hash join...  [6.346s]
Masking low complexity seeds...  [0.222s]
Searching alignments...  [34.427s]
Deallocating memory...  [0s]
Processing query block 1, reference block 4/14, shape 2/2, index chunk 4/4.
Building reference seed array...  [10.479s]
Building query seed array...  [1.993s]
Computing hash join...  [6.256s]
Masking low complexity seeds...  [0.215s]
Searching alignments...  [29.223s]
Deallocating memory...  [0s]
Deallocating buffers...  [1.423s]
Clearing query masking...  [1.589s]
Opening temporary output file...  [0s]
Computing alignments... Loading trace points...  [6.193s]
Sorting trace points...  [1.206s]
Computing alignments...  [30.358s]
Deallocating buffers...  [0.013s]
Loading trace points...  [0.076s]
Sorting trace points...  [1.198s]
Computing alignments...  [30.319s]
Deallocating buffers...  [0.016s]
Loading trace points...  [0.074s]
Sorting trace points...  [1.195s]
Computing alignments...  [30.516s]
Deallocating buffers...  [0.013s]
Loading trace points...  [0.041s]
Sorting trace points...  [1.003s]
Computing alignments...  [30.151s]
Deallocating buffers...  [0.021s]
Loading trace points...  [0.104s]
Sorting trace points...  [1.118s]
Computing alignments...  [30.126s]
Deallocating buffers...  [0.013s]
Loading trace points...  [0.072s]
Sorting trace points...  [1.033s]
Computing alignments...  [29.977s]
Deallocating buffers...  [0.013s]
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Sorting trace points...  [1.155s]
Computing alignments...  [30.42s]
Deallocating buffers...  [0.016s]
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Computing alignments...  [30.106s]
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Computing alignments...  [30.608s]
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Computing alignments...  [32.059s]
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Sorting trace points...  [1.254s]
Computing alignments...  [32.108s]
Deallocating buffers...  [0.047s]
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Sorting trace points...  [0.968s]
Computing alignments...  [31.72s]
Deallocating buffers...  [0.015s]
Loading trace points...  [0.118s]
Sorting trace points...  [0.961s]
Computing alignments...  [31.821s]
Deallocating buffers...  [0.015s]
Loading trace points...  [0.052s]
Sorting trace points...  [0.924s]
Computing alignments...  [31.887s]
Deallocating buffers...  [0.015s]
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Sorting trace points...  [1.209s]
Computing alignments...  [31.8s]
Deallocating buffers...  [0.013s]
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Sorting trace points...  [0.86s]
Computing alignments...  [34.537s]
Deallocating buffers...  [0.043s]
Loading trace points...  [0s]
 [524.222s]
Deallocating reference...  [0.08s]
Loading reference sequences...  [29.689s]
Masking reference...  [31.295s]
Initializing dictionary...  [0.078s]
Initializing temporary storage...  [0.007s]
Building reference histograms...  [32.518s]
Allocating buffers...  [0s]
Processing query block 1, reference block 5/14, shape 1/2, index chunk 1/4.
Building reference seed array...  [10.171s]
Building query seed array...  [2.069s]
Computing hash join...  [6.846s]
Masking low complexity seeds...  [0.421s]
Searching alignments...  [74.406s]
Deallocating memory...  [0s]
Processing query block 1, reference block 5/14, shape 1/2, index chunk 2/4.
Building reference seed array...  [12.486s]
Building query seed array...  [2.628s]
Computing hash join...  [6.455s]
Masking low complexity seeds...  [0.244s]
Searching alignments...  [48.104s]
Deallocating memory...  [0s]
Processing query block 1, reference block 5/14, shape 1/2, index chunk 3/4.
Building reference seed array...  [13.926s]
Building query seed array...  [2.796s]
Computing hash join...  [6.416s]
Masking low complexity seeds...  [0.237s]
Searching alignments...  [42.357s]
Deallocating memory...  [0s]
Processing query block 1, reference block 5/14, shape 1/2, index chunk 4/4.
Building reference seed array...  [10.647s]
Building query seed array...  [2.186s]
Computing hash join...  [6.456s]
Masking low complexity seeds...  [0.242s]
Searching alignments...  [38.733s]
Deallocating memory...  [0s]
Processing query block 1, reference block 5/14, shape 2/2, index chunk 1/4.
Building reference seed array...  [10.328s]
Building query seed array...  [1.994s]
Computing hash join...  [6.226s]
Masking low complexity seeds...  [0.226s]
Searching alignments...  [37.685s]
Deallocating memory...  [0s]
Processing query block 1, reference block 5/14, shape 2/2, index chunk 2/4.
Building reference seed array...  [12.559s]
Building query seed array...  [2.374s]
Computing hash join...  [6.409s]
Masking low complexity seeds...  [0.246s]
Searching alignments...  [30.27s]
Deallocating memory...  [0s]
Processing query block 1, reference block 5/14, shape 2/2, index chunk 3/4.
Building reference seed array...  [13.485s]
Building query seed array...  [2.477s]
Computing hash join...  [6.38s]
Masking low complexity seeds...  [0.215s]
Searching alignments...  [33.502s]
Deallocating memory...  [0s]
Processing query block 1, reference block 5/14, shape 2/2, index chunk 4/4.
Building reference seed array...  [10.729s]
Building query seed array...  [2.076s]
Computing hash join...  [6.319s]
Masking low complexity seeds...  [0.213s]
Searching alignments...  [29.163s]
Deallocating memory...  [0s]
Deallocating buffers...  [1.474s]
Clearing query masking...  [1.604s]
Opening temporary output file...  [0s]
Computing alignments... Loading trace points...  [6.197s]
Sorting trace points...  [1.235s]
Computing alignments...  [30.438s]
Deallocating buffers...  [0.013s]
Loading trace points...  [0.168s]
Sorting trace points...  [1.029s]
Computing alignments...  [30.377s]
Deallocating buffers...  [0.014s]
Loading trace points...  [0.091s]
Sorting trace points...  [0.884s]
Computing alignments...  [30.551s]
Deallocating buffers...  [0.014s]
Loading trace points...  [0.046s]
Sorting trace points...  [1.122s]
Computing alignments...  [30.341s]
Deallocating buffers...  [0.016s]
Loading trace points...  [0.094s]
Sorting trace points...  [0.821s]
Computing alignments...  [30.332s]
Deallocating buffers...  [0.014s]
Loading trace points...  [0.059s]
Sorting trace points...  [1.128s]
Computing alignments...  [29.968s]
Deallocating buffers...  [0.013s]
Loading trace points...  [0s]
Sorting trace points...  [1.182s]
Computing alignments...  [30.203s]
Deallocating buffers...  [0.016s]
Loading trace points...  [0.111s]
Sorting trace points...  [1.293s]
Computing alignments...  [29.931s]
Deallocating buffers...  [0.156s]
Loading trace points...  [0.047s]
Sorting trace points...  [1.167s]
Computing alignments...  [30.49s]
Deallocating buffers...  [0.046s]
Loading trace points...  [0.078s]
Sorting trace points...  [1.213s]
Computing alignments...  [31.603s]
Deallocating buffers...  [0.017s]
Loading trace points...  [0.053s]
Sorting trace points...  [1.201s]
Computing alignments...  [31.983s]
Deallocating buffers...  [0.014s]
Loading trace points...  [0.056s]
Sorting trace points...  [0.877s]
Computing alignments...  [31.613s]
Deallocating buffers...  [0.015s]
Loading trace points...  [0.079s]
Sorting trace points...  [1.232s]
Computing alignments...  [31.664s]
Deallocating buffers...  [0.093s]
Loading trace points...  [0.052s]
Sorting trace points...  [0.971s]
Computing alignments...  [31.632s]
Deallocating buffers...  [0.016s]
Loading trace points...  [0.052s]
Sorting trace points...  [1.208s]
Computing alignments...  [31.619s]
Deallocating buffers...  [0.013s]
Loading trace points...  [0s]
Sorting trace points...  [1.143s]
Computing alignments...  [34.29s]
Deallocating buffers...  [0.047s]
Loading trace points...  [0s]
 [522.727s]
Deallocating reference...  [0.083s]
Loading reference sequences...  [30.716s]
Masking reference...  [32.203s]
Initializing dictionary...  [0.078s]
Initializing temporary storage...  [0.007s]
Building reference histograms...  [32.943s]
Allocating buffers...  [0.001s]
Processing query block 1, reference block 6/14, shape 1/2, index chunk 1/4.
Building reference seed array...  [10.265s]
Building query seed array...  [2.118s]
Computing hash join...  [7.125s]
Masking low complexity seeds...  [0.532s]
Searching alignments...  [72.444s]
Deallocating memory...  [0s]
Processing query block 1, reference block 6/14, shape 1/2, index chunk 2/4.
Building reference seed array...  [12.578s]
Building query seed array...  [2.933s]
Computing hash join...  [6.424s]
Masking low complexity seeds...  [0.258s]
Searching alignments...  [47.885s]
Deallocating memory...  [0s]
Processing query block 1, reference block 6/14, shape 1/2, index chunk 3/4.
Building reference seed array...  [13.376s]
Building query seed array...  [2.669s]
Computing hash join...  [6.567s]
Masking low complexity seeds...  [0.237s]
Searching alignments...  [43.418s]
Deallocating memory...  [0s]
Processing query block 1, reference block 6/14, shape 1/2, index chunk 4/4.
Building reference seed array...  [10.682s]
Building query seed array...  [2.366s]
Computing hash join...  [6.49s]
Masking low complexity seeds...  [0.26s]
Searching alignments...  [38.432s]
Deallocating memory...  [0s]
Processing query block 1, reference block 6/14, shape 2/2, index chunk 1/4.
Building reference seed array...  [10.677s]
Building query seed array...  [1.926s]
Computing hash join...  [6.382s]
Masking low complexity seeds...  [0.224s]
Searching alignments...  [36.964s]
Deallocating memory...  [0s]
Processing query block 1, reference block 6/14, shape 2/2, index chunk 2/4.
Building reference seed array...  [13.046s]
Building query seed array...  [2.355s]
Computing hash join...  [6.336s]
Masking low complexity seeds...  [0.228s]
Searching alignments...  [32.053s]
Deallocating memory...  [0s]
Processing query block 1, reference block 6/14, shape 2/2, index chunk 3/4.
Building reference seed array...  [13.761s]
Building query seed array...  [2.42s]
Computing hash join...  [6.359s]
Masking low complexity seeds...  [0.211s]
Searching alignments...  [32.498s]
Deallocating memory...  [0s]
Processing query block 1, reference block 6/14, shape 2/2, index chunk 4/4.
Building reference seed array...  [10.46s]
Building query seed array...  [2.068s]
Computing hash join...  [6.352s]
Masking low complexity seeds...  [0.225s]
Searching alignments...  [28.598s]
Deallocating memory...  [0s]
Deallocating buffers...  [1.57s]
Clearing query masking...  [1.597s]
Opening temporary output file...  [0s]
Computing alignments... Loading trace points...  [6.207s]
Sorting trace points...  [1.202s]
Computing alignments...  [30.29s]
Deallocating buffers...  [0.013s]
Loading trace points...  [0.071s]
Sorting trace points...  [1.12s]
Computing alignments...  [30.315s]
Deallocating buffers...  [0.016s]
Loading trace points...  [0.52s]
Sorting trace points...  [1.202s]
Computing alignments...  [30.477s]
Deallocating buffers...  [0.016s]
Loading trace points...  [0.077s]
Sorting trace points...  [0.794s]
Computing alignments...  [30.334s]
Deallocating buffers...  [0.014s]
Loading trace points...  [0.071s]
Sorting trace points...  [1.145s]
Computing alignments...  [30.01s]
Deallocating buffers...  [0.013s]
Loading trace points...  [0.074s]
Sorting trace points...  [1.035s]
Computing alignments...  [29.926s]
Deallocating buffers...  [0.013s]
Loading trace points...  [0.076s]
Sorting trace points...  [1.279s]
Computing alignments...  [30.421s]
Deallocating buffers...  [0.202s]
Loading trace points...  [0.087s]
Sorting trace points...  [1.148s]
Computing alignments...  [29.867s]
Deallocating buffers...  [0.016s]
Loading trace points...  [0.099s]
Sorting trace points...  [1.16s]
Computing alignments...  [30.449s]
Deallocating buffers...  [0.013s]
Loading trace points...  [0.069s]
Sorting trace points...  [1.212s]
Computing alignments...  [31.634s]
Deallocating buffers...  [0.013s]
Loading trace points...  [0.054s]
Sorting trace points...  [1.206s]
Computing alignments...  [32.057s]
Deallocating buffers...  [0.014s]
Loading trace points...  [0.043s]
Sorting trace points...  [1.289s]
Computing alignments...  [31.662s]
Deallocating buffers...  [0.156s]
Loading trace points...  [0.064s]
Sorting trace points...  [1.243s]
Computing alignments...  [31.701s]
Deallocating buffers...  [0.013s]
Loading trace points...  [0.075s]
Sorting trace points...  [1.193s]
Computing alignments...  [31.701s]
Deallocating buffers...  [0.013s]
Loading trace points...  [0.047s]
Sorting trace points...  [0.943s]
Computing alignments...  [31.742s]
Deallocating buffers...  [0.014s]
Loading trace points...  [0s]
Sorting trace points...  [1.063s]
Computing alignments...  [34.287s]
Deallocating buffers...  [0.048s]
Loading trace points...  [0s]
 [523.537s]
Deallocating reference...  [0.08s]
Loading reference sequences...  [31.84s]
Masking reference...  [30.966s]
Initializing dictionary...  [0.078s]
Initializing temporary storage...  [0.007s]
Building reference histograms...  [32.951s]
Allocating buffers...  [0s]
Processing query block 1, reference block 7/14, shape 1/2, index chunk 1/4.
Building reference seed array...  [10.424s]
Building query seed array...  [1.948s]
Computing hash join...  [7.093s]
Masking low complexity seeds...  [0.564s]
Searching alignments...  [74.396s]
Deallocating memory...  [0s]
Processing query block 1, reference block 7/14, shape 1/2, index chunk 2/4.
Building reference seed array...  [12.617s]
Building query seed array...  [2.982s]
Computing hash join...  [6.68s]
Masking low complexity seeds...  [0.231s]
Searching alignments...  [47.006s]
Deallocating memory...  [0s]
Processing query block 1, reference block 7/14, shape 1/2, index chunk 3/4.
Building reference seed array...  [13.775s]
Building query seed array...  [2.619s]
Computing hash join...  [6.454s]
Masking low complexity seeds...  [0.252s]
Searching alignments...  [42.905s]
Deallocating memory...  [0s]
Processing query block 1, reference block 7/14, shape 1/2, index chunk 4/4.
Building reference seed array...  [10.638s]
Building query seed array...  [2.253s]
Computing hash join...  [6.428s]
Masking low complexity seeds...  [0.256s]
Searching alignments...  [37.102s]
Deallocating memory...  [0s]
Processing query block 1, reference block 7/14, shape 2/2, index chunk 1/4.
Building reference seed array...  [10.611s]
Building query seed array...  [2.137s]
Computing hash join...  [6.42s]
Masking low complexity seeds...  [0.223s]
Searching alignments...  [37.881s]
Deallocating memory...  [0s]
Processing query block 1, reference block 7/14, shape 2/2, index chunk 2/4.
Building reference seed array...  [13.203s]
Building query seed array...  [2.372s]
Computing hash join...  [6.208s]
Masking low complexity seeds...  [0.224s]
Searching alignments...  [30.269s]
Deallocating memory...  [0s]
Processing query block 1, reference block 7/14, shape 2/2, index chunk 3/4.
Building reference seed array...  [14.088s]
Building query seed array...  [2.44s]
Computing hash join...  [6.252s]
Masking low complexity seeds...  [0.217s]
Searching alignments...  [33.517s]
Deallocating memory...  [0s]
Processing query block 1, reference block 7/14, shape 2/2, index chunk 4/4.
Building reference seed array...  [10.827s]
Building query seed array...  [2.062s]
Computing hash join...  [6.434s]
Masking low complexity seeds...  [0.219s]
Searching alignments...  [28.951s]
Deallocating memory...  [0s]
Deallocating buffers...  [1.669s]
Clearing query masking...  [1.624s]
Opening temporary output file...  [0s]
Computing alignments... Loading trace points...  [6.218s]
Sorting trace points...  [1.2s]
Computing alignments...  [30.244s]
Deallocating buffers...  [0.016s]
Loading trace points...  [0.073s]
Sorting trace points...  [1.117s]
Computing alignments...  [30.315s]
Deallocating buffers...  [0.016s]
Loading trace points...  [0.103s]
Sorting trace points...  [0.917s]
Computing alignments...  [30.414s]
Deallocating buffers...  [0.016s]
Loading trace points...  [0.045s]
Sorting trace points...  [1.135s]
Computing alignments...  [30.19s]
Deallocating buffers...  [0.016s]
Loading trace points...  [0.087s]
Sorting trace points...  [1.153s]
Computing alignments...  [30.164s]
Deallocating buffers...  [0.013s]
Loading trace points...  [0.065s]
Sorting trace points...  [1.008s]
Computing alignments...  [29.985s]
Deallocating buffers...  [0.116s]
Loading trace points...  [0.053s]
Sorting trace points...  [1.155s]
Computing alignments...  [30.47s]
Deallocating buffers...  [0.013s]
Loading trace points...  [0.132s]
Sorting trace points...  [1.153s]
Computing alignments...  [30.068s]
Deallocating buffers...  [0.016s]
Loading trace points...  [0.06s]
Sorting trace points...  [1.225s]
Computing alignments...  [30.716s]
Deallocating buffers...  [0.172s]
Loading trace points...  [0s]
Sorting trace points...  [1.174s]
Computing alignments...  [31.851s]
Deallocating buffers...  [0.013s]
Loading trace points...  [0.053s]
Sorting trace points...  [1.214s]
Computing alignments...  [32.214s]
Deallocating buffers...  [0.014s]
Loading trace points...  [0.065s]
Sorting trace points...  [1.316s]
Computing alignments...  [31.864s]
Deallocating buffers...  [0.252s]
Loading trace points...  [0.081s]
Sorting trace points...  [1.211s]
Computing alignments...  [31.749s]
Deallocating buffers...  [0.014s]
Loading trace points...  [0.053s]
Sorting trace points...  [1.337s]
Computing alignments...  [31.838s]
Deallocating buffers...  [0.198s]
Loading trace points...  [0.063s]
Sorting trace points...  [1.221s]
Computing alignments...  [31.84s]
Deallocating buffers...  [0.017s]
Loading trace points...  [0s]
Sorting trace points...  [1.212s]
Computing alignments...  [34.505s]
Deallocating buffers...  [0.04s]
Loading trace points...  [0s]
 [525.519s]
Deallocating reference...  [0.089s]
Loading reference sequences...  [30.207s]
Masking reference...  [31.761s]
Initializing dictionary...  [0.078s]
Initializing temporary storage...  [0.007s]
Building reference histograms...  [32.42s]
Allocating buffers...  [0s]
Processing query block 1, reference block 8/14, shape 1/2, index chunk 1/4.
Building reference seed array...  [10.483s]
Building query seed array...  [2.112s]
Computing hash join...  [7.025s]
Masking low complexity seeds...  [0.338s]
Searching alignments...  [74.483s]
Deallocating memory...  [0s]
Processing query block 1, reference block 8/14, shape 1/2, index chunk 2/4.
Building reference seed array...  [12.567s]
Building query seed array...  [2.984s]
Computing hash join...  [6.443s]
Masking low complexity seeds...  [0.254s]
Searching alignments...  [48.095s]
Deallocating memory...  [0s]
Processing query block 1, reference block 8/14, shape 1/2, index chunk 3/4.
Building reference seed array...  [13.7s]
Building query seed array...  [2.753s]
Computing hash join...  [6.516s]
Masking low complexity seeds...  [0.232s]
Searching alignments...  [41.277s]
Deallocating memory...  [0s]
Processing query block 1, reference block 8/14, shape 1/2, index chunk 4/4.
Building reference seed array...  [10.754s]
Building query seed array...  [2.233s]
Computing hash join...  [6.384s]
Masking low complexity seeds...  [0.239s]
Searching alignments...  [38.562s]
Deallocating memory...  [0s]
Processing query block 1, reference block 8/14, shape 2/2, index chunk 1/4.
Building reference seed array...  [10.774s]
Building query seed array...  [2.032s]
Computing hash join...  [6.382s]
Masking low complexity seeds...  [0.243s]
Searching alignments...  [37.674s]
Deallocating memory...  [0s]
Processing query block 1, reference block 8/14, shape 2/2, index chunk 2/4.
Building reference seed array...  [12.752s]
Building query seed array...  [2.239s]
Computing hash join...  [6.233s]
Masking low complexity seeds...  [0.227s]
Searching alignments...  [30.512s]
Deallocating memory...  [0s]
Processing query block 1, reference block 8/14, shape 2/2, index chunk 3/4.
Building reference seed array...  [13.387s]
Building query seed array...  [2.435s]
Computing hash join...  [6.373s]
Masking low complexity seeds...  [0.215s]
Searching alignments...  [34.875s]
Deallocating memory...  [0s]
Processing query block 1, reference block 8/14, shape 2/2, index chunk 4/4.
Building reference seed array...  [10.445s]
Building query seed array...  [2.061s]
Computing hash join...  [6.281s]
Masking low complexity seeds...  [0.217s]
Searching alignments...  [29.663s]
Deallocating memory...  [0s]
Deallocating buffers...  [1.808s]
Clearing query masking...  [1.627s]
Opening temporary output file...  [0s]
Computing alignments... Loading trace points...  [6.233s]
Sorting trace points...  [1.228s]
Computing alignments...  [30.429s]
Deallocating buffers...  [0.015s]
Loading trace points...  [0.092s]
Sorting trace points...  [1.108s]
Computing alignments...  [30.358s]
Deallocating buffers...  [0.016s]
Loading trace points...  [0.108s]
Sorting trace points...  [1.143s]
Computing alignments...  [30.597s]
Deallocating buffers...  [0.013s]
Loading trace points...  [0.474s]
Sorting trace points...  [1.182s]
Computing alignments...  [30.323s]
Deallocating buffers...  [0.021s]
Loading trace points...  [0.116s]
Sorting trace points...  [0.932s]
Computing alignments...  [30.183s]
Deallocating buffers...  [0.014s]
Loading trace points...  [0.08s]
Sorting trace points...  [1.158s]
Computing alignments...  [29.955s]
Deallocating buffers...  [0.016s]
Loading trace points...  [0.057s]
Sorting trace points...  [1.317s]
Computing alignments...  [30.35s]
Deallocating buffers...  [0.206s]
Loading trace points...  [0.125s]
Sorting trace points...  [1.152s]
Computing alignments...  [29.965s]
Deallocating buffers...  [0.038s]
Loading trace points...  [0.064s]
Sorting trace points...  [1.212s]
Computing alignments...  [30.566s]
Deallocating buffers...  [0.102s]
Loading trace points...  [0.002s]
Sorting trace points...  [1.187s]
Computing alignments...  [31.673s]
Deallocating buffers...  [0.016s]
Loading trace points...  [0.052s]
Sorting trace points...  [1.028s]
Computing alignments...  [32.049s]
Deallocating buffers...  [0.015s]
Loading trace points...  [0.076s]
Sorting trace points...  [1.236s]
Computing alignments...  [31.642s]
Deallocating buffers...  [0.014s]
Loading trace points...  [0.076s]
Sorting trace points...  [1.189s]
Computing alignments...  [31.795s]
Deallocating buffers...  [0.017s]
Loading trace points...  [0.048s]
Sorting trace points...  [1.214s]
Computing alignments...  [31.772s]
Deallocating buffers...  [0.014s]
Loading trace points...  [0.053s]
Sorting trace points...  [1.233s]
Computing alignments...  [31.861s]
Deallocating buffers...  [0.017s]
Loading trace points...  [0s]
Sorting trace points...  [1.202s]
Computing alignments...  [34.245s]
Deallocating buffers...  [0.05s]
Loading trace points...  [0s]
 [524.956s]
Deallocating reference...  [0.069s]
Loading reference sequences...  [29.694s]
Masking reference...  [32.248s]
Initializing dictionary...  [0.078s]
Initializing temporary storage...  [0.007s]
Building reference histograms...  [31.653s]
Allocating buffers...  [0s]
Processing query block 1, reference block 9/14, shape 1/2, index chunk 1/4.
Building reference seed array...  [10.6s]
Building query seed array...  [2.196s]
Computing hash join...  [7.242s]
Masking low complexity seeds...  [0.3s]
Searching alignments...  [72.168s]
Deallocating memory...  [0s]
Processing query block 1, reference block 9/14, shape 1/2, index chunk 2/4.
Building reference seed array...  [12.956s]
Building query seed array...  [2.892s]
Computing hash join...  [6.421s]
Masking low complexity seeds...  [0.255s]
Searching alignments...  [49.079s]
Deallocating memory...  [0s]
Processing query block 1, reference block 9/14, shape 1/2, index chunk 3/4.
Building reference seed array...  [14.025s]
Building query seed array...  [2.862s]
Computing hash join...  [6.518s]
Masking low complexity seeds...  [0.254s]
Searching alignments...  [42.955s]
Deallocating memory...  [0s]
Processing query block 1, reference block 9/14, shape 1/2, index chunk 4/4.
Building reference seed array...  [10.561s]
Building query seed array...  [2.26s]
Computing hash join...  [6.461s]
Masking low complexity seeds...  [0.246s]
Searching alignments...  [37.132s]
Deallocating memory...  [0s]
Processing query block 1, reference block 9/14, shape 2/2, index chunk 1/4.
Building reference seed array...  [10.536s]
Building query seed array...  [2.11s]
Computing hash join...  [6.105s]
Masking low complexity seeds...  [0.224s]
Searching alignments...  [37.137s]
Deallocating memory...  [0s]
Processing query block 1, reference block 9/14, shape 2/2, index chunk 2/4.
Building reference seed array...  [12.825s]
Building query seed array...  [2.281s]
Computing hash join...  [6.371s]
Masking low complexity seeds...  [0.252s]
Searching alignments...  [30.505s]
Deallocating memory...  [0s]
Processing query block 1, reference block 9/14, shape 2/2, index chunk 3/4.
Building reference seed array...  [13.824s]
Building query seed array...  [2.524s]
Computing hash join...  [6.333s]
Masking low complexity seeds...  [0.23s]
Searching alignments...  [34.435s]
Deallocating memory...  [0s]
Processing query block 1, reference block 9/14, shape 2/2, index chunk 4/4.
Building reference seed array...  [10.255s]
Building query seed array...  [1.948s]
Computing hash join...  [6.324s]
Masking low complexity seeds...  [0.217s]
Searching alignments...  [29.008s]
Deallocating memory...  [0s]
Deallocating buffers...  [1.871s]
Clearing query masking...  [1.609s]
Opening temporary output file...  [0.001s]
Computing alignments... Loading trace points...  [6.152s]
Sorting trace points...  [1.197s]
Computing alignments...  [30.506s]
Deallocating buffers...  [0.013s]
Loading trace points...  [0.116s]
Sorting trace points...  [0.961s]
Computing alignments...  [30.401s]
Deallocating buffers...  [0.015s]
Loading trace points...  [0.071s]
Sorting trace points...  [0.87s]
Computing alignments...  [30.634s]
Deallocating buffers...  [0.014s]
Loading trace points...  [0.101s]
Sorting trace points...  [1.167s]
Computing alignments...  [30.296s]
Deallocating buffers...  [0.116s]
Loading trace points...  [0.096s]
Sorting trace points...  [1.01s]
Computing alignments...  [30.127s]
Deallocating buffers...  [0.015s]
Loading trace points...  [0.052s]
Sorting trace points...  [1.076s]
Computing alignments...  [30.045s]
Deallocating buffers...  [0.012s]
Loading trace points...  [0.146s]
Sorting trace points...  [1.124s]
Computing alignments...  [30.333s]
Deallocating buffers...  [0.013s]
Loading trace points...  [0.083s]
Sorting trace points...  [1.146s]
Computing alignments...  [30.134s]
Deallocating buffers...  [0.013s]
Loading trace points...  [0.071s]
Sorting trace points...  [1.033s]
Computing alignments...  [30.614s]
Deallocating buffers...  [0.014s]
Loading trace points...  [0.073s]
Sorting trace points...  [1.325s]
Computing alignments...  [31.782s]
Deallocating buffers...  [0.164s]
Loading trace points...  [0.098s]
Sorting trace points...  [1.22s]
Computing alignments...  [32.177s]
Deallocating buffers...  [0.014s]
Loading trace points...  [0.488s]
Sorting trace points...  [0.973s]
Computing alignments...  [31.66s]
Deallocating buffers...  [0.015s]
Loading trace points...  [0.069s]
Sorting trace points...  [1.337s]
Computing alignments...  [31.769s]
Deallocating buffers...  [0.163s]
Loading trace points...  [0.053s]
Sorting trace points...  [1.407s]
Computing alignments...  [31.766s]
Deallocating buffers...  [0.197s]
Loading trace points...  [0.057s]
Sorting trace points...  [1.435s]
Computing alignments...  [31.877s]
Deallocating buffers...  [0.18s]
Loading trace points...  [0s]
Sorting trace points...  [1.201s]
Computing alignments...  [33.741s]
Deallocating buffers...  [0.171s]
Loading trace points...  [0s]
 [525.411s]
Deallocating reference...  [0.069s]
Loading reference sequences...  [30.157s]
Masking reference...  [32.109s]
Initializing dictionary...  [0.076s]
Initializing temporary storage...  [0.007s]
Building reference histograms...  [32.173s]
Allocating buffers...  [0.001s]
Processing query block 1, reference block 10/14, shape 1/2, index chunk 1/4.
Building reference seed array...  [10.245s]
Building query seed array...  [2.022s]
Computing hash join...  [7.265s]
Masking low complexity seeds...  [0.251s]
Searching alignments...  [75.292s]
Deallocating memory...  [0s]
Processing query block 1, reference block 10/14, shape 1/2, index chunk 2/4.
Building reference seed array...  [13.257s]
Building query seed array...  [2.922s]
Computing hash join...  [6.809s]
Masking low complexity seeds...  [0.261s]
Searching alignments...  [46.499s]
Deallocating memory...  [0s]
Processing query block 1, reference block 10/14, shape 1/2, index chunk 3/4.
Building reference seed array...  [13.614s]
Building query seed array...  [2.626s]
Computing hash join...  [6.477s]
Masking low complexity seeds...  [0.233s]
Searching alignments...  [43.008s]
Deallocating memory...  [0s]
Processing query block 1, reference block 10/14, shape 1/2, index chunk 4/4.
Building reference seed array...  [10.539s]
Building query seed array...  [2.326s]
Computing hash join...  [6.521s]
Masking low complexity seeds...  [0.275s]
Searching alignments...  [39.251s]
Deallocating memory...  [0s]
Processing query block 1, reference block 10/14, shape 2/2, index chunk 1/4.
Building reference seed array...  [10.454s]
Building query seed array...  [1.909s]
Computing hash join...  [6.195s]
Masking low complexity seeds...  [0.232s]
Searching alignments...  [38.797s]
Deallocating memory...  [0s]
Processing query block 1, reference block 10/14, shape 2/2, index chunk 2/4.
Building reference seed array...  [13.104s]
Building query seed array...  [2.499s]
Computing hash join...  [6.505s]
Masking low complexity seeds...  [0.242s]
Searching alignments...  [29.955s]
Deallocating memory...  [0s]
Processing query block 1, reference block 10/14, shape 2/2, index chunk 3/4.
Building reference seed array...  [13.529s]
Building query seed array...  [2.389s]
Computing hash join...  [6.312s]
Masking low complexity seeds...  [0.233s]
Searching alignments...  [33.116s]
Deallocating memory...  [0s]
Processing query block 1, reference block 10/14, shape 2/2, index chunk 4/4.
Building reference seed array...  [10.384s]
Building query seed array...  [2.14s]
Computing hash join...  [6.395s]
Masking low complexity seeds...  [0.211s]
Searching alignments...  [28.871s]
Deallocating memory...  [0s]
Deallocating buffers...  [2.02s]
Clearing query masking...  [1.612s]
Opening temporary output file...  [0.001s]
Computing alignments... Loading trace points...  [6.155s]
Sorting trace points...  [1.219s]
Computing alignments...  [30.316s]
Deallocating buffers...  [0.014s]
Loading trace points...  [0.085s]
Sorting trace points...  [1.181s]
Computing alignments...  [30.273s]
Deallocating buffers...  [0.013s]
Loading trace points...  [1.122s]
Sorting trace points...  [1.265s]
Computing alignments...  [30.526s]
Deallocating buffers...  [0.016s]
Loading trace points...  [0.049s]
Sorting trace points...  [0.778s]
Computing alignments...  [30.111s]
Deallocating buffers...  [0.015s]
Loading trace points...  [0.088s]
Sorting trace points...  [0.883s]
Computing alignments...  [30.097s]
Deallocating buffers...  [0.06s]
Loading trace points...  [0.06s]
Sorting trace points...  [0.948s]
Computing alignments...  [29.831s]
Deallocating buffers...  [0.014s]
Loading trace points...  [0.001s]
Sorting trace points...  [0.839s]
Computing alignments...  [30.326s]
Deallocating buffers...  [0.014s]
Loading trace points...  [0.091s]
Sorting trace points...  [1.218s]
Computing alignments...  [30.028s]
Deallocating buffers...  [0.196s]
Loading trace points...  [0.077s]
Sorting trace points...  [0.918s]
Computing alignments...  [30.541s]
Deallocating buffers...  [0.014s]
Loading trace points...  [0.08s]
Sorting trace points...  [1.274s]
Computing alignments...  [31.631s]
Deallocating buffers...  [0.079s]
Loading trace points...  [0.05s]
Sorting trace points...  [1.4s]
Computing alignments...  [32.132s]
Deallocating buffers...  [0.198s]
Loading trace points...  [0.074s]
Sorting trace points...  [1.129s]
Computing alignments...  [31.617s]
Deallocating buffers...  [0.016s]
Loading trace points...  [0.054s]
Sorting trace points...  [1.228s]
Computing alignments...  [31.692s]
Deallocating buffers...  [0.013s]
Loading trace points...  [0.08s]
Sorting trace points...  [1.101s]
Computing alignments...  [31.645s]
Deallocating buffers...  [0.016s]
Loading trace points...  [0.048s]
Sorting trace points...  [1.186s]
Computing alignments...  [31.679s]
Deallocating buffers...  [0.024s]
Loading trace points...  [0s]
Sorting trace points...  [1.204s]
Computing alignments...  [34.135s]
Deallocating buffers...  [0.052s]
Loading trace points...  [0s]
 [523.456s]
Deallocating reference...  [0.071s]
Loading reference sequences...  [29.634s]
Masking reference...  [32.129s]
Initializing dictionary...  [0.077s]
Initializing temporary storage...  [0.007s]
Building reference histograms...  [32.657s]
Allocating buffers...  [0s]
Processing query block 1, reference block 11/14, shape 1/2, index chunk 1/4.
Building reference seed array...  [10.768s]
Building query seed array...  [2.061s]
Computing hash join...  [7.485s]
Masking low complexity seeds...  [0.251s]
Searching alignments...  [74.234s]
Deallocating memory...  [0s]
Processing query block 1, reference block 11/14, shape 1/2, index chunk 2/4.
Building reference seed array...  [12.962s]
Building query seed array...  [2.978s]
Computing hash join...  [6.57s]
Masking low complexity seeds...  [0.279s]
Searching alignments...  [46.122s]
Deallocating memory...  [0s]
Processing query block 1, reference block 11/14, shape 1/2, index chunk 3/4.
Building reference seed array...  [14.23s]
Building query seed array...  [2.697s]
Computing hash join...  [7.445s]
Masking low complexity seeds...  [0.224s]
Searching alignments...  [40.597s]
Deallocating memory...  [0s]
Processing query block 1, reference block 11/14, shape 1/2, index chunk 4/4.
Building reference seed array...  [10.725s]
Building query seed array...  [2.351s]
Computing hash join...  [6.584s]
Masking low complexity seeds...  [0.23s]
Searching alignments...  [36.659s]
Deallocating memory...  [0s]
Processing query block 1, reference block 11/14, shape 2/2, index chunk 1/4.
Building reference seed array...  [10.505s]
Building query seed array...  [2.07s]
Computing hash join...  [6.425s]
Masking low complexity seeds...  [0.22s]
Searching alignments...  [37.042s]
Deallocating memory...  [0s]
Processing query block 1, reference block 11/14, shape 2/2, index chunk 2/4.
Building reference seed array...  [12.875s]
Building query seed array...  [2.284s]
Computing hash join...  [6.4s]
Masking low complexity seeds...  [0.216s]
Searching alignments...  [29.635s]
Deallocating memory...  [0s]
Processing query block 1, reference block 11/14, shape 2/2, index chunk 3/4.
Building reference seed array...  [13.912s]
Building query seed array...  [2.594s]
Computing hash join...  [6.543s]
Masking low complexity seeds...  [0.221s]
Searching alignments...  [33.238s]
Deallocating memory...  [0s]
Processing query block 1, reference block 11/14, shape 2/2, index chunk 4/4.
Building reference seed array...  [10.507s]
Building query seed array...  [2.027s]
Computing hash join...  [6.481s]
Masking low complexity seeds...  [0.223s]
Searching alignments...  [28.631s]
Deallocating memory...  [0s]
Deallocating buffers...  [2.01s]
Clearing query masking...  [1.601s]
Opening temporary output file...  [0s]
Computing alignments... Loading trace points...  [6.068s]
Sorting trace points...  [1.186s]
Computing alignments...  [30.047s]
Deallocating buffers...  [0.013s]
Loading trace points...  [0.161s]
Sorting trace points...  [1.148s]
Computing alignments...  [30.085s]
Deallocating buffers...  [0.015s]
Loading trace points...  [0.069s]
Sorting trace points...  [1.139s]
Computing alignments...  [30.332s]
Deallocating buffers...  [0.013s]
Loading trace points...  [0.094s]
Sorting trace points...  [1.115s]
Computing alignments...  [30.053s]
Deallocating buffers...  [0.021s]
Loading trace points...  [0.07s]
Sorting trace points...  [1.064s]
Computing alignments...  [29.964s]
Deallocating buffers...  [0.016s]
Loading trace points...  [0.087s]
Sorting trace points...  [0.93s]
Computing alignments...  [29.769s]
Deallocating buffers...  [0.017s]
Loading trace points...  [0.103s]
Sorting trace points...  [1.139s]
Computing alignments...  [30.152s]
Deallocating buffers...  [0.013s]
Loading trace points...  [0.071s]
Sorting trace points...  [1.033s]
Computing alignments...  [29.832s]
Deallocating buffers...  [0.013s]
Loading trace points...  [0.117s]
Sorting trace points...  [1.256s]
Computing alignments...  [30.342s]
Deallocating buffers...  [0.135s]
Loading trace points...  [0.109s]
Sorting trace points...  [1.321s]
Computing alignments...  [31.565s]
Deallocating buffers...  [0.209s]
Loading trace points...  [0.064s]
Sorting trace points...  [1.366s]
Computing alignments...  [31.905s]
Deallocating buffers...  [0.157s]
Loading trace points...  [0.068s]
Sorting trace points...  [1.408s]
Computing alignments...  [31.572s]
Deallocating buffers...  [0.145s]
Loading trace points...  [0.093s]
Sorting trace points...  [1.091s]
Computing alignments...  [31.685s]
Deallocating buffers...  [0.016s]
Loading trace points...  [0.039s]
Sorting trace points...  [1.241s]
Computing alignments...  [31.676s]
Deallocating buffers...  [0.047s]
Loading trace points...  [0.044s]
Sorting trace points...  [1.38s]
Computing alignments...  [31.825s]
Deallocating buffers...  [0.275s]
Loading trace points...  [0s]
Sorting trace points...  [1.218s]
Computing alignments...  [34.126s]
Deallocating buffers...  [0.049s]
Loading trace points...  [0s]
 [522.612s]
Deallocating reference...  [0.064s]
Loading reference sequences...  [31.033s]
Masking reference...  [30.917s]
Initializing dictionary...  [0.077s]
Initializing temporary storage...  [0.008s]
Building reference histograms...  [32.849s]
Allocating buffers...  [0s]
Processing query block 1, reference block 12/14, shape 1/2, index chunk 1/4.
Building reference seed array...  [10.212s]
Building query seed array...  [2.008s]
Computing hash join...  [7.19s]
Masking low complexity seeds...  [0.292s]
Searching alignments...  [73.679s]
Deallocating memory...  [0s]
Processing query block 1, reference block 12/14, shape 1/2, index chunk 2/4.
Building reference seed array...  [13.357s]
Building query seed array...  [2.819s]
Computing hash join...  [6.401s]
Masking low complexity seeds...  [0.27s]
Searching alignments...  [48.035s]
Deallocating memory...  [0s]
Processing query block 1, reference block 12/14, shape 1/2, index chunk 3/4.
Building reference seed array...  [13.794s]
Building query seed array...  [2.8s]
Computing hash join...  [6.552s]
Masking low complexity seeds...  [0.238s]
Searching alignments...  [43.231s]
Deallocating memory...  [0s]
Processing query block 1, reference block 12/14, shape 1/2, index chunk 4/4.
Building reference seed array...  [10.274s]
Building query seed array...  [2.305s]
Computing hash join...  [6.475s]
Masking low complexity seeds...  [0.257s]
Searching alignments...  [38.87s]
Deallocating memory...  [0s]
Processing query block 1, reference block 12/14, shape 2/2, index chunk 1/4.
Building reference seed array...  [10.528s]
Building query seed array...  [2.047s]
Computing hash join...  [6.341s]
Masking low complexity seeds...  [0.235s]
Searching alignments...  [37.909s]
Deallocating memory...  [0s]
Processing query block 1, reference block 12/14, shape 2/2, index chunk 2/4.
Building reference seed array...  [12.912s]
Building query seed array...  [2.335s]
Computing hash join...  [6.11s]
Masking low complexity seeds...  [0.224s]
Searching alignments...  [29.82s]
Deallocating memory...  [0s]
Processing query block 1, reference block 12/14, shape 2/2, index chunk 3/4.
Building reference seed array...  [13.534s]
Building query seed array...  [2.441s]
Computing hash join...  [6.338s]
Masking low complexity seeds...  [0.216s]
Searching alignments...  [34.495s]
Deallocating memory...  [0s]
Processing query block 1, reference block 12/14, shape 2/2, index chunk 4/4.
Building reference seed array...  [10.425s]
Building query seed array...  [2.127s]
Computing hash join...  [6.423s]
Masking low complexity seeds...  [0.222s]
Searching alignments...  [29.006s]
Deallocating memory...  [0s]
Deallocating buffers...  [2.079s]
Clearing query masking...  [1.605s]
Opening temporary output file...  [0s]
Computing alignments... Loading trace points...  [6.154s]
Sorting trace points...  [1.257s]
Computing alignments...  [30.227s]
Deallocating buffers...  [0.015s]
Loading trace points...  [0.09s]
Sorting trace points...  [1.138s]
Computing alignments...  [30.284s]
Deallocating buffers...  [0.013s]
Loading trace points...  [0.072s]
Sorting trace points...  [1.196s]
Computing alignments...  [30.611s]
Deallocating buffers...  [0.013s]
Loading trace points...  [0.038s]
Sorting trace points...  [0.997s]
Computing alignments...  [30.227s]
Deallocating buffers...  [0.02s]
Loading trace points...  [0.07s]
Sorting trace points...  [1.107s]
Computing alignments...  [30.229s]
Deallocating buffers...  [0.013s]
Loading trace points...  [0.082s]
Sorting trace points...  [1.055s]
Computing alignments...  [29.986s]
Deallocating buffers...  [0.013s]
Loading trace points...  [0.001s]
Sorting trace points...  [0.834s]
Computing alignments...  [30.416s]
Deallocating buffers...  [0.014s]
Loading trace points...  [1.235s]
Sorting trace points...  [1.379s]
Computing alignments...  [30.116s]
Deallocating buffers...  [0.255s]
Loading trace points...  [0.059s]
Sorting trace points...  [0.905s]
Computing alignments...  [30.493s]
Deallocating buffers...  [0.015s]
Loading trace points...  [0.147s]
Sorting trace points...  [1.331s]
Computing alignments...  [31.805s]
Deallocating buffers...  [0.143s]
Loading trace points...  [0.052s]
Sorting trace points...  [1.289s]
Computing alignments...  [32.193s]
Deallocating buffers...  [0.071s]
Loading trace points...  [0.06s]
Sorting trace points...  [1.18s]
Computing alignments...  [31.892s]
Deallocating buffers...  [0.112s]
Loading trace points...  [0.092s]
Sorting trace points...  [1.191s]
Computing alignments...  [32.03s]
Deallocating buffers...  [0.014s]
Loading trace points...  [0.075s]
Sorting trace points...  [1.169s]
Computing alignments...  [31.86s]
Deallocating buffers...  [0.017s]
Loading trace points...  [0.065s]
Sorting trace points...  [0.917s]
Computing alignments...  [31.854s]
Deallocating buffers...  [0.016s]
Loading trace points...  [0s]
Sorting trace points...  [1.195s]
Computing alignments...  [34.212s]
Deallocating buffers...  [0.272s]
Loading trace points...  [0s]
 [526.073s]
Deallocating reference...  [0.07s]
Loading reference sequences...  [29.368s]
Masking reference...  [32.073s]
Initializing dictionary...  [0.078s]
Initializing temporary storage...  [0.007s]
Building reference histograms...  [32.526s]
Allocating buffers...  [0.001s]
Processing query block 1, reference block 13/14, shape 1/2, index chunk 1/4.
Building reference seed array...  [10.234s]
Building query seed array...  [2.109s]
Computing hash join...  [7.394s]
Masking low complexity seeds...  [0.505s]
Searching alignments...  [76.367s]
Deallocating memory...  [0s]
Processing query block 1, reference block 13/14, shape 1/2, index chunk 2/4.
Building reference seed array...  [13.015s]
Building query seed array...  [2.843s]
Computing hash join...  [6.919s]
Masking low complexity seeds...  [0.252s]
Searching alignments...  [48.821s]
Deallocating memory...  [0s]
Processing query block 1, reference block 13/14, shape 1/2, index chunk 3/4.
Building reference seed array...  [14.22s]
Building query seed array...  [2.815s]
Computing hash join...  [6.473s]
Masking low complexity seeds...  [0.251s]
Searching alignments...  [42.024s]
Deallocating memory...  [0s]
Processing query block 1, reference block 13/14, shape 1/2, index chunk 4/4.
Building reference seed array...  [10.513s]
Building query seed array...  [2.359s]
Computing hash join...  [6.688s]
Masking low complexity seeds...  [0.315s]
Searching alignments...  [39.73s]
Deallocating memory...  [0s]
Processing query block 1, reference block 13/14, shape 2/2, index chunk 1/4.
Building reference seed array...  [9.973s]
Building query seed array...  [1.929s]
Computing hash join...  [6.406s]
Masking low complexity seeds...  [0.256s]
Searching alignments...  [38.508s]
Deallocating memory...  [0s]
Processing query block 1, reference block 13/14, shape 2/2, index chunk 2/4.
Building reference seed array...  [12.563s]
Building query seed array...  [2.307s]
Computing hash join...  [6.671s]
Masking low complexity seeds...  [0.226s]
Searching alignments...  [29.857s]
Deallocating memory...  [0s]
Processing query block 1, reference block 13/14, shape 2/2, index chunk 3/4.
Building reference seed array...  [13.431s]
Building query seed array...  [2.564s]
Computing hash join...  [6.369s]
Masking low complexity seeds...  [0.241s]
Searching alignments...  [34.626s]
Deallocating memory...  [0s]
Processing query block 1, reference block 13/14, shape 2/2, index chunk 4/4.
Building reference seed array...  [10.545s]
Building query seed array...  [2.012s]
Computing hash join...  [6.274s]
Masking low complexity seeds...  [0.216s]
Searching alignments...  [29.188s]
Deallocating memory...  [0s]
Deallocating buffers...  [2.047s]
Clearing query masking...  [1.604s]
Opening temporary output file...  [0s]
Computing alignments... Loading trace points...  [6.244s]
Sorting trace points...  [1.21s]
Computing alignments...  [30.255s]
Deallocating buffers...  [0.015s]
Loading trace points...  [0.07s]
Sorting trace points...  [1.174s]
Computing alignments...  [30.153s]
Deallocating buffers...  [0.013s]
Loading trace points...  [0.087s]
Sorting trace points...  [1.284s]
Computing alignments...  [30.505s]
Deallocating buffers...  [0.224s]
Loading trace points...  [0.001s]
Sorting trace points...  [1.134s]
Computing alignments...  [30.084s]
Deallocating buffers...  [0.014s]
Loading trace points...  [0.059s]
Sorting trace points...  [1.116s]
Computing alignments...  [30.11s]
Deallocating buffers...  [0.016s]
Loading trace points...  [0.06s]
Sorting trace points...  [1.122s]
Computing alignments...  [29.977s]
Deallocating buffers...  [0.013s]
Loading trace points...  [0.071s]
Sorting trace points...  [1.098s]
Computing alignments...  [30.243s]
Deallocating buffers...  [0.013s]
Loading trace points...  [0.075s]
Sorting trace points...  [1.258s]
Computing alignments...  [30.09s]
Deallocating buffers...  [0.248s]
Loading trace points...  [0.001s]
Sorting trace points...  [1.27s]
Computing alignments...  [30.525s]
Deallocating buffers...  [0.051s]
Loading trace points...  [0.094s]
Sorting trace points...  [1.19s]
Computing alignments...  [31.632s]
Deallocating buffers...  [0.016s]
Loading trace points...  [0.055s]
Sorting trace points...  [1.177s]
Computing alignments...  [32.034s]
Deallocating buffers...  [0.014s]
Loading trace points...  [0.331s]
Sorting trace points...  [1.255s]
Computing alignments...  [31.492s]
Deallocating buffers...  [0.017s]
Loading trace points...  [0.064s]
Sorting trace points...  [1.181s]
Computing alignments...  [31.712s]
Deallocating buffers...  [0.013s]
Loading trace points...  [0.072s]
Sorting trace points...  [1.177s]
Computing alignments...  [31.583s]
Deallocating buffers...  [0.014s]
Loading trace points...  [0.061s]
Sorting trace points...  [1.185s]
Computing alignments...  [31.618s]
Deallocating buffers...  [0.013s]
Loading trace points...  [0s]
Sorting trace points...  [1.273s]
Computing alignments...  [33.652s]
Deallocating buffers...  [0.192s]
Loading trace points...  [0s]
 [523.21s]
Deallocating reference...  [0.069s]
Loading reference sequences...  [23.65s]
Masking reference...  [25.963s]
Initializing dictionary...  [0.063s]
Initializing temporary storage...  [0.008s]
Building reference histograms...  [25.93s]
Allocating buffers...  [0s]
Processing query block 1, reference block 14/14, shape 1/2, index chunk 1/4.
Building reference seed array...  [8.363s]
Building query seed array...  [2.105s]
Computing hash join...  [4.677s]
Masking low complexity seeds...  [0.244s]
Searching alignments...  [59.931s]
Deallocating memory...  [0s]
Processing query block 1, reference block 14/14, shape 1/2, index chunk 2/4.
Building reference seed array...  [10.208s]
Building query seed array...  [2.763s]
Computing hash join...  [4.824s]
Masking low complexity seeds...  [0.215s]
Searching alignments...  [40.639s]
Deallocating memory...  [0s]
Processing query block 1, reference block 14/14, shape 1/2, index chunk 3/4.
Building reference seed array...  [11.755s]
Building query seed array...  [2.614s]
Computing hash join...  [5.164s]
Masking low complexity seeds...  [0.218s]
Searching alignments...  [34.757s]
Deallocating memory...  [0s]
Processing query block 1, reference block 14/14, shape 1/2, index chunk 4/4.
Building reference seed array...  [8.443s]
Building query seed array...  [2.105s]
Computing hash join...  [4.953s]
Masking low complexity seeds...  [0.222s]
Searching alignments...  [30.305s]
Deallocating memory...  [0s]
Processing query block 1, reference block 14/14, shape 2/2, index chunk 1/4.
Building reference seed array...  [8.416s]
Building query seed array...  [2.06s]
Computing hash join...  [5.081s]
Masking low complexity seeds...  [0.225s]
Searching alignments...  [30.869s]
Deallocating memory...  [0s]
Processing query block 1, reference block 14/14, shape 2/2, index chunk 2/4.
Building reference seed array...  [9.951s]
Building query seed array...  [2.235s]
Computing hash join...  [4.847s]
Masking low complexity seeds...  [0.211s]
Searching alignments...  [24.823s]
Deallocating memory...  [0s]
Processing query block 1, reference block 14/14, shape 2/2, index chunk 3/4.
Building reference seed array...  [10.964s]
Building query seed array...  [2.292s]
Computing hash join...  [5.007s]
Masking low complexity seeds...  [0.213s]
Searching alignments...  [28.784s]
Deallocating memory...  [0s]
Processing query block 1, reference block 14/14, shape 2/2, index chunk 4/4.
Building reference seed array...  [8.322s]
Building query seed array...  [1.936s]
Computing hash join...  [5.063s]
Masking low complexity seeds...  [0.303s]
Searching alignments...  [23.509s]
Deallocating memory...  [0s]
Deallocating buffers...  [0.985s]
Clearing query masking...  [1.537s]
Opening temporary output file...  [0.013s]
Computing alignments... Loading trace points...  [10.474s]
Sorting trace points...  [2.021s]
Computing alignments...  [48.226s]
Deallocating buffers...  [0.021s]
Loading trace points...  [0.184s]
Sorting trace points...  [1.961s]
Computing alignments...  [48.249s]
Deallocating buffers...  [0.025s]
Loading trace points...  [0.119s]
Sorting trace points...  [1.824s]
Computing alignments...  [47.874s]
Deallocating buffers...  [0.212s]
Loading trace points...  [0.17s]
Sorting trace points...  [1.544s]
Computing alignments...  [47.979s]
Deallocating buffers...  [0.023s]
Loading trace points...  [0.148s]
Sorting trace points...  [1.569s]
Computing alignments...  [49.397s]
Deallocating buffers...  [0.041s]
Loading trace points...  [0.223s]
Sorting trace points...  [1.623s]
Computing alignments...  [50.572s]
Deallocating buffers...  [0.095s]
Loading trace points...  [0.118s]
Sorting trace points...  [1.602s]
Computing alignments...  [50.195s]
Deallocating buffers...  [0.024s]
Loading trace points...  [0s]
Sorting trace points...  [1.913s]
Computing alignments...  [52.082s]
Deallocating buffers...  [0.038s]
Loading trace points...  [0s]
 [420.731s]
Deallocating reference...  [0.078s]
Loading reference sequences...  [0.096s]
Deallocating buffers...  [0s]
Joining output blocks... Joining output blocks...  [2128.26s]
 [2128.26s]
Deallocating queries...  [0.073s]
Loading query sequences...  [0s]
Closing the input file...  [0s]
Closing the output file... Loading dictionary...  [4.314s]
 [5.615s]
Closing the database...  [0s]
Cleaning up...  [0s]
Total time = 17751.2s
Reported 2387210963 pairwise alignments, 2387210963 HSPs.
13107372 queries aligned.
DIAMOND BLASTx on /gscratch/srlab/sam/data/P_verrucosa/RNAseq/E8_R1.fastp-trim.20230215.fq.gz complete: E8_R1.blastx.meganized.daa

Now MEGANizing E8_R1.blastx.meganized.daa
Version   MEGAN Community Edition (version 6.22.0, built 19 Feb 2022)
Author(s) Daniel H. Huson
Copyright (C) 2022 Daniel H. Huson. This program comes with ABSOLUTELY NO WARRANTY.
Java version: 17.0.2
Functional classifications to use: EC, EGGNOG, GTDB, INTERPRO2GO, SEED
Loading ncbi.map: 2,396,736
Loading ncbi.tre: 2,396,740
Loading ec.map:     8,200
Loading ec.tre:     8,204
Loading eggnog.map:    30,875
Loading eggnog.tre:    30,986
Loading gtdb.map:   240,103
Loading gtdb.tre:   240,107
Loading interpro2go.map:    14,242
Loading interpro2go.tre:    28,907
Loading seed.map:       961
Loading seed.tre:       962
Meganizing: E8_R1.blastx.meganized.daa
Meganizing init
Annotating DAA file using FAST mode (accession database and first accession per line)
Annotating references
10% 20% 30% 40% 50% 60% 70% 80% 100% (641.8s)
Writing
10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (1.5s)
Binning reads Initializing...
Initializing binning...
Using 'Naive LCA' algorithm for binning: Taxonomy
Using Best-Hit algorithm for binning: SEED
Using Best-Hit algorithm for binning: EGGNOG
Using 'Naive LCA' algorithm for binning: GTDB
Using Best-Hit algorithm for binning: EC
Using Best-Hit algorithm for binning: INTERPRO2GO
Binning reads...
Binning reads Analyzing alignments
10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (4,611.1s)
Total reads:       13,107,372
With hits:          13,107,372 
Alignments:      2,374,520,290
Assig. Taxonomy:    11,545,250
Assig. SEED:           128,593
Assig. EGGNOG:          78,115
Assig. GTDB:           446,570
Assig. EC:           1,977,623
Assig. INTERPRO2GO:  1,237,813
MinSupport set to: 6553
Binning reads Applying min-support & disabled filter to Taxonomy...
10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (0.3s)
Min-supp. changes:       4,457
Binning reads Applying min-support & disabled filter to GTDB...
10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (11.2s)
Min-supp. changes:       3,754
Binning reads Writing classification tables
10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (37.0s)
Binning reads Syncing
100% (0.4s)
Class. Taxonomy:            89
Class. SEED:               532
Class. EGGNOG:           1,884
Class. GTDB:                23
Class. EC:               2,490
Class. INTERPRO2GO:      8,038
Total time:  5,312s
Peak memory: 40.5 of 195.3G
MEGANization of E8_R1.blastx.meganized.daa completed.


Generating MD5 checksum for /gscratch/srlab/sam/data/P_verrucosa/RNAseq/E8_R2.fastp-trim.20230215.fq.gz...
0074e07e25595938cab0ebe87e29b938  /gscratch/srlab/sam/data/P_verrucosa/RNAseq/E8_R2.fastp-trim.20230215.fq.gz

Running DIAMOND BLASTx on /gscratch/srlab/sam/data/P_verrucosa/RNAseq/E8_R2.fastp-trim.20230215.fq.gz.

diamond v2.1.1.155 (C) Max Planck Society for the Advancement of Science
Documentation, support and updates available at http://www.diamondsearch.org
Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021)

#CPU threads: 40
Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1)
Temporary directory: 
Percentage range of top alignment score to report hits: 5
Opening the database...  [0.355s]
Database: /gscratch/srlab/blastdbs/20230215-ncbi-nr/20230215-ncbi-nr.dmnd (type: Diamond database, sequences: 526308523, letters: 207134680681)
Block size = 15000000000
Opening the input file...  [0.753s]
Opening the output file...  [0s]
Loading query sequences...  [73.058s]
Masking queries...  [18.415s]
Algorithm: Double-indexed
Building query histograms...  [19.404s]
Loading reference sequences...  [29.294s]
Masking reference...  [32.038s]
Initializing dictionary...  [0.078s]
Initializing temporary storage...  [0.008s]
Building reference histograms...  [32.453s]
Allocating buffers...  [0s]
Processing query block 1, reference block 1/14, shape 1/2, index chunk 1/4.
Building reference seed array...  [10.735s]
Building query seed array...  [2.218s]
Computing hash join...  [6.618s]
Masking low complexity seeds...  [0.385s]
Searching alignments...  [75.655s]
Deallocating memory...  [0s]
Processing query block 1, reference block 1/14, shape 1/2, index chunk 2/4.
Building reference seed array...  [12.52s]
Building query seed array...  [2.797s]
Computing hash join...  [6.705s]
Masking low complexity seeds...  [0.283s]
Searching alignments...  [48.264s]
Deallocating memory...  [0s]
Processing query block 1, reference block 1/14, shape 1/2, index chunk 3/4.
Building reference seed array...  [13.79s]
Building query seed array...  [2.612s]
Computing hash join...  [6.66s]
Masking low complexity seeds...  [0.294s]
Searching alignments...  [44.584s]
Deallocating memory...  [0s]
Processing query block 1, reference block 1/14, shape 1/2, index chunk 4/4.
Building reference seed array...  [10.594s]
Building query seed array...  [2.375s]
Computing hash join...  [6.97s]
Masking low complexity seeds...  [0.338s]
Searching alignments...  [37.894s]
Deallocating memory...  [0s]
Processing query block 1, reference block 1/14, shape 2/2, index chunk 1/4.
Building reference seed array...  [10.497s]
Building query seed array...  [2.066s]
Computing hash join...  [7.149s]
Masking low complexity seeds...  [0.286s]
Searching alignments...  [40.209s]
Deallocating memory...  [0s]
Processing query block 1, reference block 1/14, shape 2/2, index chunk 2/4.
Building reference seed array...  [12.195s]
Building query seed array...  [2.328s]
Computing hash join...  [6.342s]
Masking low complexity seeds...  [0.239s]
Searching alignments...  [31.818s]
Deallocating memory...  [0s]
Processing query block 1, reference block 1/14, shape 2/2, index chunk 3/4.
Building reference seed array...  [13.716s]
Building query seed array...  [2.418s]
Computing hash join...  [6.427s]
Masking low complexity seeds...  [0.243s]
Searching alignments...  [34.913s]
Deallocating memory...  [0s]
Processing query block 1, reference block 1/14, shape 2/2, index chunk 4/4.
Building reference seed array...  [10.072s]
Building query seed array...  [2.04s]
Computing hash join...  [6.433s]
Masking low complexity seeds...  [0.245s]
Searching alignments...  [30.975s]
Deallocating memory...  [0s]
Deallocating buffers...  [1.555s]
Clearing query masking...  [1.744s]
Opening temporary output file...  [0s]
Computing alignments... Loading trace points...  [6.092s]
Sorting trace points...  [1.24s]
Computing alignments...  [30.183s]
Deallocating buffers...  [0.015s]
Loading trace points...  [0.048s]
Sorting trace points...  [1.158s]
Computing alignments...  [30.563s]
Deallocating buffers...  [0.026s]
Loading trace points...  [0.081s]
Sorting trace points...  [1.195s]
Computing alignments...  [30.443s]
Deallocating buffers...  [0.015s]
Loading trace points...  [0.067s]
Sorting trace points...  [1.119s]
Computing alignments...  [29.721s]
Deallocating buffers...  [0.012s]
Loading trace points...  [0.076s]
Sorting trace points...  [0.963s]
Computing alignments...  [29.91s]
Deallocating buffers...  [0.015s]
Loading trace points...  [0.043s]
Sorting trace points...  [1.118s]
Computing alignments...  [29.78s]
Deallocating buffers...  [0.013s]
Loading trace points...  [0.076s]
Sorting trace points...  [0.962s]
Computing alignments...  [30.15s]
Deallocating buffers...  [0.013s]
Loading trace points...  [0.071s]
Sorting trace points...  [1.119s]
Computing alignments...  [29.924s]
Deallocating buffers...  [0.016s]
Loading trace points...  [0.046s]
Sorting trace points...  [1.074s]
Computing alignments...  [30.659s]
Deallocating buffers...  [0.013s]
Loading trace points...  [1.007s]
Sorting trace points...  [1.342s]
Computing alignments...  [32.294s]
Deallocating buffers...  [0.017s]
Loading trace points...  [0.064s]
Sorting trace points...  [1.264s]
Computing alignments...  [32.703s]
Deallocating buffers...  [0.017s]
Loading trace points...  [0.061s]
Sorting trace points...  [1.223s]
Computing alignments...  [32.253s]
Deallocating buffers...  [0.014s]
Loading trace points...  [0.065s]
Sorting trace points...  [1.263s]
Computing alignments...  [32.281s]
Deallocating buffers...  [0.017s]
Loading trace points...  [0.053s]
Sorting trace points...  [1.092s]
Computing alignments...  [32.297s]
Deallocating buffers...  [0.015s]
Loading trace points...  [0.092s]
Sorting trace points...  [1.241s]
Computing alignments...  [32.376s]
Deallocating buffers...  [0.017s]
Loading trace points...  [0s]
Sorting trace points...  [1.038s]
Computing alignments...  [35.882s]
Deallocating buffers...  [0.037s]
Loading trace points...  [0s]
 [528.186s]
Deallocating reference...  [0.098s]
Loading reference sequences...  [29.555s]
Masking reference...  [30.981s]
Initializing dictionary...  [0.077s]
Initializing temporary storage...  [0.008s]
Building reference histograms...  [32.428s]
Allocating buffers...  [0s]
Processing query block 1, reference block 2/14, shape 1/2, index chunk 1/4.
Building reference seed array...  [10.527s]
Building query seed array...  [2.12s]
Computing hash join...  [6.522s]
Masking low complexity seeds...  [0.575s]
Searching alignments...  [74.22s]
Deallocating memory...  [0s]
Processing query block 1, reference block 2/14, shape 1/2, index chunk 2/4.
Building reference seed array...  [13.319s]
Building query seed array...  [2.823s]
Computing hash join...  [6.269s]
Masking low complexity seeds...  [0.286s]
Searching alignments...  [47.564s]
Deallocating memory...  [0s]
Processing query block 1, reference block 2/14, shape 1/2, index chunk 3/4.
Building reference seed array...  [14.293s]
Building query seed array...  [2.711s]
Computing hash join...  [5.903s]
Masking low complexity seeds...  [0.276s]
Searching alignments...  [42.793s]
Deallocating memory...  [0s]
Processing query block 1, reference block 2/14, shape 1/2, index chunk 4/4.
Building reference seed array...  [11.193s]
Building query seed array...  [2.22s]
Computing hash join...  [6.033s]
Masking low complexity seeds...  [0.311s]
Searching alignments...  [38.146s]
Deallocating memory...  [0s]
Processing query block 1, reference block 2/14, shape 2/2, index chunk 1/4.
Building reference seed array...  [11.38s]
Building query seed array...  [2.079s]
Computing hash join...  [5.936s]
Masking low complexity seeds...  [0.292s]
Searching alignments...  [41.392s]
Deallocating memory...  [0s]
Processing query block 1, reference block 2/14, shape 2/2, index chunk 2/4.
Building reference seed array...  [13.023s]
Building query seed array...  [2.281s]
Computing hash join...  [6.127s]
Masking low complexity seeds...  [0.279s]
Searching alignments...  [31.179s]
Deallocating memory...  [0s]
Processing query block 1, reference block 2/14, shape 2/2, index chunk 3/4.
Building reference seed array...  [14.313s]
Building query seed array...  [2.429s]
Computing hash join...  [5.717s]
Masking low complexity seeds...  [0.249s]
Searching alignments...  [33.973s]
Deallocating memory...  [0s]
Processing query block 1, reference block 2/14, shape 2/2, index chunk 4/4.
Building reference seed array...  [11.124s]
Building query seed array...  [2.044s]
Computing hash join...  [5.257s]
Masking low complexity seeds...  [0.258s]
Searching alignments...  [28.902s]
Deallocating memory...  [0s]
Deallocating buffers...  [2.048s]
Clearing query masking...  [1.592s]
Opening temporary output file...  [0s]
Computing alignments... Loading trace points...  [6.204s]
Sorting trace points...  [1.224s]
Computing alignments...  [30.206s]
Deallocating buffers...  [0.015s]
Loading trace points...  [0.06s]
Sorting trace points...  [0.92s]
Computing alignments...  [30.424s]
Deallocating buffers...  [0.015s]
Loading trace points...  [0.103s]
Sorting trace points...  [1.179s]
Computing alignments...  [30.142s]
Deallocating buffers...  [0.016s]
Loading trace points...  [0.064s]
Sorting trace points...  [1.107s]
Computing alignments...  [29.44s]
Deallocating buffers...  [0.015s]
Loading trace points...  [0.09s]
Sorting trace points...  [1.124s]
Computing alignments...  [29.818s]
Deallocating buffers...  [0.012s]
Loading trace points...  [0.043s]
Sorting trace points...  [1.138s]
Computing alignments...  [29.631s]
Deallocating buffers...  [0.013s]
Loading trace points...  [0.091s]
Sorting trace points...  [1.143s]
Computing alignments...  [30.093s]
Deallocating buffers...  [0.016s]
Loading trace points...  [0.13s]
Sorting trace points...  [1.125s]
Computing alignments...  [29.756s]
Deallocating buffers...  [0.012s]
Loading trace points...  [0.041s]
Sorting trace points...  [1.159s]
Computing alignments...  [30.529s]
Deallocating buffers...  [0.013s]
Loading trace points...  [0.075s]
Sorting trace points...  [1.203s]
Computing alignments...  [32.327s]
Deallocating buffers...  [0.017s]
Loading trace points...  [0.001s]
Sorting trace points...  [1.11s]
Computing alignments...  [32.656s]
Deallocating buffers...  [0.015s]
Loading trace points...  [0.07s]
Sorting trace points...  [1.242s]
Computing alignments...  [32.174s]
Deallocating buffers...  [0.014s]
Loading trace points...  [0.063s]
Sorting trace points...  [1.296s]
Computing alignments...  [32.22s]
Deallocating buffers...  [0.014s]
Loading trace points...  [0.044s]
Sorting trace points...  [0.959s]
Computing alignments...  [32.223s]
Deallocating buffers...  [0.015s]
Loading trace points...  [0.104s]
Sorting trace points...  [1.231s]
Computing alignments...  [32.317s]
Deallocating buffers...  [0.014s]
Loading trace points...  [0s]
Sorting trace points...  [1.244s]
Computing alignments...  [34.778s]
Deallocating buffers...  [0.05s]
Loading trace points...  [0s]
 [524.759s]
Deallocating reference...  [0.095s]
Loading reference sequences...  [33.109s]
Masking reference...  [31.301s]
Initializing dictionary...  [0.078s]
Initializing temporary storage...  [0.008s]
Building reference histograms...  [32.479s]
Allocating buffers...  [0.001s]
Processing query block 1, reference block 3/14, shape 1/2, index chunk 1/4.
Building reference seed array...  [10.681s]
Building query seed array...  [2.063s]
Computing hash join...  [7.014s]
Masking low complexity seeds...  [0.472s]
Searching alignments...  [75.729s]
Deallocating memory...  [0s]
Processing query block 1, reference block 3/14, shape 1/2, index chunk 2/4.
Building reference seed array...  [12.869s]
Building query seed array...  [2.673s]
Computing hash join...  [6.402s]
Masking low complexity seeds...  [0.269s]
Searching alignments...  [48.317s]
Deallocating memory...  [0s]
Processing query block 1, reference block 3/14, shape 1/2, index chunk 3/4.
Building reference seed array...  [13.762s]
Building query seed array...  [2.677s]
Computing hash join...  [7.371s]
Masking low complexity seeds...  [0.262s]
Searching alignments...  [43.388s]
Deallocating memory...  [0s]
Processing query block 1, reference block 3/14, shape 1/2, index chunk 4/4.
Building reference seed array...  [10.567s]
Building query seed array...  [2.24s]
Computing hash join...  [6.688s]
Masking low complexity seeds...  [0.266s]
Searching alignments...  [37.759s]
Deallocating memory...  [0s]
Processing query block 1, reference block 3/14, shape 2/2, index chunk 1/4.
Building reference seed array...  [10.664s]
Building query seed array...  [1.937s]
Computing hash join...  [6.297s]
Masking low complexity seeds...  [0.243s]
Searching alignments...  [40.59s]
Deallocating memory...  [0s]
Processing query block 1, reference block 3/14, shape 2/2, index chunk 2/4.
Building reference seed array...  [12.881s]
Building query seed array...  [2.289s]
Computing hash join...  [6.413s]
Masking low complexity seeds...  [0.272s]
Searching alignments...  [31.856s]
Deallocating memory...  [0s]
Processing query block 1, reference block 3/14, shape 2/2, index chunk 3/4.
Building reference seed array...  [14.082s]
Building query seed array...  [2.413s]
Computing hash join...  [6.262s]
Masking low complexity seeds...  [0.273s]
Searching alignments...  [34.61s]
Deallocating memory...  [0s]
Processing query block 1, reference block 3/14, shape 2/2, index chunk 4/4.
Building reference seed array...  [10.247s]
Building query seed array...  [1.891s]
Computing hash join...  [6.45s]
Masking low complexity seeds...  [0.257s]
Searching alignments...  [28.828s]
Deallocating memory...  [0s]
Deallocating buffers...  [1.684s]
Clearing query masking...  [1.612s]
Opening temporary output file...  [0s]
Computing alignments... Loading trace points...  [6.424s]
Sorting trace points...  [1.197s]
Computing alignments...  [30.244s]
Deallocating buffers...  [0.016s]
Loading trace points...  [0.066s]
Sorting trace points...  [1.125s]
Computing alignments...  [30.744s]
Deallocating buffers...  [0.023s]
Loading trace points...  [0.1s]
Sorting trace points...  [1.194s]
Computing alignments...  [30.513s]
Deallocating buffers...  [0.016s]
Loading trace points...  [0.066s]
Sorting trace points...  [1.106s]
Computing alignments...  [29.802s]
Deallocating buffers...  [0.012s]
Loading trace points...  [0.09s]
Sorting trace points...  [0.8s]
Computing alignments...  [29.956s]
Deallocating buffers...  [0.014s]
Loading trace points...  [0.087s]
Sorting trace points...  [1.118s]
Computing alignments...  [29.743s]
Deallocating buffers...  [0.012s]
Loading trace points...  [0.112s]
Sorting trace points...  [1.172s]
Computing alignments...  [30.317s]
Deallocating buffers...  [0.013s]
Loading trace points...  [0.075s]
Sorting trace points...  [0.916s]
Computing alignments...  [29.995s]
Deallocating buffers...  [0.014s]
Loading trace points...  [0.042s]
Sorting trace points...  [1.184s]
Computing alignments...  [30.691s]
Deallocating buffers...  [0.016s]
Loading trace points...  [0.153s]
Sorting trace points...  [1.241s]
Computing alignments...  [32.37s]
Deallocating buffers...  [0.049s]
Loading trace points...  [0.042s]
Sorting trace points...  [0.931s]
Computing alignments...  [32.725s]
Deallocating buffers...  [0.015s]
Loading trace points...  [0.132s]
Sorting trace points...  [1.274s]
Computing alignments...  [32.306s]
Deallocating buffers...  [0.014s]
Loading trace points...  [0.063s]
Sorting trace points...  [1.141s]
Computing alignments...  [32.415s]
Deallocating buffers...  [0.016s]
Loading trace points...  [0.045s]
Sorting trace points...  [1.334s]
Computing alignments...  [32.369s]
Deallocating buffers...  [0.063s]
Loading trace points...  [0.068s]
Sorting trace points...  [1.158s]
Computing alignments...  [32.944s]
Deallocating buffers...  [0.022s]
Loading trace points...  [0s]
Sorting trace points...  [1.289s]
Computing alignments...  [35.157s]
Deallocating buffers...  [0.045s]
Loading trace points...  [0s]
 [528.542s]
Deallocating reference...  [0.12s]
Loading reference sequences...  [29.487s]
Masking reference...  [31s]
Initializing dictionary...  [0.078s]
Initializing temporary storage...  [0.007s]
Building reference histograms...  [32.76s]
Allocating buffers...  [0.001s]
Processing query block 1, reference block 4/14, shape 1/2, index chunk 1/4.
Building reference seed array...  [10.241s]
Building query seed array...  [2.086s]
Computing hash join...  [7.226s]
Masking low complexity seeds...  [0.514s]
Searching alignments...  [75.236s]
Deallocating memory...  [0s]
Processing query block 1, reference block 4/14, shape 1/2, index chunk 2/4.
Building reference seed array...  [12.744s]
Building query seed array...  [2.873s]
Computing hash join...  [6.931s]
Masking low complexity seeds...  [0.282s]
Searching alignments...  [47.75s]
Deallocating memory...  [0s]
Processing query block 1, reference block 4/14, shape 1/2, index chunk 3/4.
Building reference seed array...  [13.566s]
Building query seed array...  [2.73s]
Computing hash join...  [6.806s]
Masking low complexity seeds...  [0.292s]
Searching alignments...  [44.297s]
Deallocating memory...  [0s]
Processing query block 1, reference block 4/14, shape 1/2, index chunk 4/4.
Building reference seed array...  [10.212s]
Building query seed array...  [2.161s]
Computing hash join...  [6.739s]
Masking low complexity seeds...  [0.298s]
Searching alignments...  [38.601s]
Deallocating memory...  [0s]
Processing query block 1, reference block 4/14, shape 2/2, index chunk 1/4.
Building reference seed array...  [10.398s]
Building query seed array...  [2.013s]
Computing hash join...  [6.351s]
Masking low complexity seeds...  [0.265s]
Searching alignments...  [41.338s]
Deallocating memory...  [0s]
Processing query block 1, reference block 4/14, shape 2/2, index chunk 2/4.
Building reference seed array...  [12.643s]
Building query seed array...  [2.302s]
Computing hash join...  [6.93s]
Masking low complexity seeds...  [0.268s]
Searching alignments...  [32.182s]
Deallocating memory...  [0s]
Processing query block 1, reference block 4/14, shape 2/2, index chunk 3/4.
Building reference seed array...  [13.959s]
Building query seed array...  [2.523s]
Computing hash join...  [6.743s]
Masking low complexity seeds...  [0.256s]
Searching alignments...  [34.056s]
Deallocating memory...  [0s]
Processing query block 1, reference block 4/14, shape 2/2, index chunk 4/4.
Building reference seed array...  [10.197s]
Building query seed array...  [1.922s]
Computing hash join...  [6.565s]
Masking low complexity seeds...  [0.29s]
Searching alignments...  [29.341s]
Deallocating memory...  [0s]
Deallocating buffers...  [1.512s]
Clearing query masking...  [1.732s]
Opening temporary output file...  [0s]
Computing alignments... Loading trace points...  [6.101s]
Sorting trace points...  [1.234s]
Computing alignments...  [30.109s]
Deallocating buffers...  [0.013s]
Loading trace points...  [0.072s]
Sorting trace points...  [1.185s]
Computing alignments...  [30.693s]
Deallocating buffers...  [0.214s]
Loading trace points...  [0.074s]
Sorting trace points...  [1.191s]
Computing alignments...  [30.29s]
Deallocating buffers...  [0.016s]
Loading trace points...  [0.064s]
Sorting trace points...  [1.11s]
Computing alignments...  [29.478s]
Deallocating buffers...  [0.012s]
Loading trace points...  [0.07s]
Sorting trace points...  [1.155s]
Computing alignments...  [29.757s]
Deallocating buffers...  [0.013s]
Loading trace points...  [0.063s]
Sorting trace points...  [0.99s]
Computing alignments...  [29.523s]
Deallocating buffers...  [0.015s]
Loading trace points...  [0.078s]
Sorting trace points...  [1.151s]
Computing alignments...  [30.03s]
Deallocating buffers...  [0.013s]
Loading trace points...  [0.107s]
Sorting trace points...  [0.9s]
Computing alignments...  [29.791s]
Deallocating buffers...  [0.013s]
Loading trace points...  [0.047s]
Sorting trace points...  [0.979s]
Computing alignments...  [30.485s]
Deallocating buffers...  [0.014s]
Loading trace points...  [0.086s]
Sorting trace points...  [0.891s]
Computing alignments...  [32.165s]
Deallocating buffers...  [0.016s]
Loading trace points...  [0.047s]
Sorting trace points...  [1.261s]
Computing alignments...  [32.652s]
Deallocating buffers...  [0.014s]
Loading trace points...  [0.049s]
Sorting trace points...  [1.241s]
Computing alignments...  [32.133s]
Deallocating buffers...  [0.014s]
Loading trace points...  [0.057s]
Sorting trace points...  [1.219s]
Computing alignments...  [32.295s]
Deallocating buffers...  [0.017s]
Loading trace points...  [0.072s]
Sorting trace points...  [1.236s]
Computing alignments...  [32.403s]
Deallocating buffers...  [0.017s]
Loading trace points...  [0.352s]
Sorting trace points...  [1.379s]
Computing alignments...  [32.415s]
Deallocating buffers...  [0.109s]
Loading trace points...  [0s]
Sorting trace points...  [1.241s]
Computing alignments...  [34.949s]
Deallocating buffers...  [0.045s]
Loading trace points...  [0s]
 [525.731s]
Deallocating reference...  [0.082s]
Loading reference sequences...  [29.503s]
Masking reference...  [32.178s]
Initializing dictionary...  [0.077s]
Initializing temporary storage...  [0.008s]
Building reference histograms...  [32.736s]
Allocating buffers...  [0s]
Processing query block 1, reference block 5/14, shape 1/2, index chunk 1/4.
Building reference seed array...  [10.344s]
Building query seed array...  [2.082s]
Computing hash join...  [6.626s]
Masking low complexity seeds...  [0.268s]
Searching alignments...  [74.992s]
Deallocating memory...  [0s]
Processing query block 1, reference block 5/14, shape 1/2, index chunk 2/4.
Building reference seed array...  [12.814s]
Building query seed array...  [2.958s]
Computing hash join...  [6.241s]
Masking low complexity seeds...  [0.285s]
Searching alignments...  [46.343s]
Deallocating memory...  [0s]
Processing query block 1, reference block 5/14, shape 1/2, index chunk 3/4.
Building reference seed array...  [14.159s]
Building query seed array...  [2.641s]
Computing hash join...  [6.111s]
Masking low complexity seeds...  [0.268s]
Searching alignments...  [41.609s]
Deallocating memory...  [0s]
Processing query block 1, reference block 5/14, shape 1/2, index chunk 4/4.
Building reference seed array...  [10.73s]
Building query seed array...  [2.228s]
Computing hash join...  [5.973s]
Masking low complexity seeds...  [0.298s]
Searching alignments...  [36.986s]
Deallocating memory...  [0s]
Processing query block 1, reference block 5/14, shape 2/2, index chunk 1/4.
Building reference seed array...  [10.49s]
Building query seed array...  [2.063s]
Computing hash join...  [5.78s]
Masking low complexity seeds...  [0.28s]
Searching alignments...  [40.392s]
Deallocating memory...  [0s]
Processing query block 1, reference block 5/14, shape 2/2, index chunk 2/4.
Building reference seed array...  [12.941s]
Building query seed array...  [2.26s]
Computing hash join...  [5.835s]
Masking low complexity seeds...  [0.297s]
Searching alignments...  [30.504s]
Deallocating memory...  [0s]
Processing query block 1, reference block 5/14, shape 2/2, index chunk 3/4.
Building reference seed array...  [13.865s]
Building query seed array...  [2.527s]
Computing hash join...  [5.844s]
Masking low complexity seeds...  [0.278s]
Searching alignments...  [34.485s]
Deallocating memory...  [0s]
Processing query block 1, reference block 5/14, shape 2/2, index chunk 4/4.
Building reference seed array...  [11.191s]
Building query seed array...  [1.975s]
Computing hash join...  [5.79s]
Masking low complexity seeds...  [0.244s]
Searching alignments...  [29.334s]
Deallocating memory...  [0s]
Deallocating buffers...  [2.136s]
Clearing query masking...  [1.613s]
Opening temporary output file...  [0s]
Computing alignments... Loading trace points...  [6.136s]
Sorting trace points...  [1.239s]
Computing alignments...  [30.131s]
Deallocating buffers...  [0.013s]
Loading trace points...  [0.069s]
Sorting trace points...  [0.928s]
Computing alignments...  [30.629s]
Deallocating buffers...  [0.024s]
Loading trace points...  [0.068s]
Sorting trace points...  [1.154s]
Computing alignments...  [30.331s]
Deallocating buffers...  [0.013s]
Loading trace points...  [0.057s]
Sorting trace points...  [1.108s]
Computing alignments...  [29.598s]
Deallocating buffers...  [0.012s]
Loading trace points...  [0.046s]
Sorting trace points...  [1.132s]
Computing alignments...  [29.871s]
Deallocating buffers...  [0.013s]
Loading trace points...  [0.046s]
Sorting trace points...  [1.091s]
Computing alignments...  [29.745s]
Deallocating buffers...  [0.015s]
Loading trace points...  [0.076s]
Sorting trace points...  [1.058s]
Computing alignments...  [30.133s]
Deallocating buffers...  [0.013s]
Loading trace points...  [0.081s]
Sorting trace points...  [1.147s]
Computing alignments...  [29.857s]
Deallocating buffers...  [0.012s]
Loading trace points...  [0.041s]
Sorting trace points...  [1.176s]
Computing alignments...  [30.526s]
Deallocating buffers...  [0.013s]
Loading trace points...  [0.101s]
Sorting trace points...  [0.983s]
Computing alignments...  [32.31s]
Deallocating buffers...  [0.015s]
Loading trace points...  [0.037s]
Sorting trace points...  [1.261s]
Computing alignments...  [32.656s]
Deallocating buffers...  [0.014s]
Loading trace points...  [0.074s]
Sorting trace points...  [1.211s]
Computing alignments...  [32.293s]
Deallocating buffers...  [0.014s]
Loading trace points...  [0.076s]
Sorting trace points...  [1.126s]
Computing alignments...  [32.436s]
Deallocating buffers...  [0.017s]
Loading trace points...  [0.052s]
Sorting trace points...  [1.227s]
Computing alignments...  [32.471s]
Deallocating buffers...  [0.014s]
Loading trace points...  [0.08s]
Sorting trace points...  [1.228s]
Computing alignments...  [32.507s]
Deallocating buffers...  [0.013s]
Loading trace points...  [0s]
Sorting trace points...  [1.244s]
Computing alignments...  [34.734s]
Deallocating buffers...  [0.052s]
Loading trace points...  [0s]
 [526.029s]
Deallocating reference...  [0.088s]
Loading reference sequences...  [29.217s]
Masking reference...  [32.161s]
Initializing dictionary...  [0.078s]
Initializing temporary storage...  [0.008s]
Building reference histograms...  [32.432s]
Allocating buffers...  [0s]
Processing query block 1, reference block 6/14, shape 1/2, index chunk 1/4.
Building reference seed array...  [10.264s]
Building query seed array...  [1.988s]
Computing hash join...  [7.14s]
Masking low complexity seeds...  [0.276s]
Searching alignments...  [73.563s]
Deallocating memory...  [0s]
Processing query block 1, reference block 6/14, shape 1/2, index chunk 2/4.
Building reference seed array...  [13.419s]
Building query seed array...  [3.053s]
Computing hash join...  [7.056s]
Masking low complexity seeds...  [0.261s]
Searching alignments...  [47.856s]
Deallocating memory...  [0s]
Processing query block 1, reference block 6/14, shape 1/2, index chunk 3/4.
Building reference seed array...  [14.029s]
Building query seed array...  [3.023s]
Computing hash join...  [7.033s]
Masking low complexity seeds...  [0.266s]
Searching alignments...  [41.642s]
Deallocating memory...  [0s]
Processing query block 1, reference block 6/14, shape 1/2, index chunk 4/4.
Building reference seed array...  [10.565s]
Building query seed array...  [2.266s]
Computing hash join...  [6.913s]
Masking low complexity seeds...  [0.329s]
Searching alignments...  [36.941s]
Deallocating memory...  [0s]
Processing query block 1, reference block 6/14, shape 2/2, index chunk 1/4.
Building reference seed array...  [10.582s]
Building query seed array...  [2.009s]
Computing hash join...  [6.937s]
Masking low complexity seeds...  [0.304s]
Searching alignments...  [38.735s]
Deallocating memory...  [0s]
Processing query block 1, reference block 6/14, shape 2/2, index chunk 2/4.
Building reference seed array...  [12.864s]
Building query seed array...  [2.343s]
Computing hash join...  [6.66s]
Masking low complexity seeds...  [0.263s]
Searching alignments...  [30.73s]
Deallocating memory...  [0s]
Processing query block 1, reference block 6/14, shape 2/2, index chunk 3/4.
Building reference seed array...  [14.565s]
Building query seed array...  [2.588s]
Computing hash join...  [6.756s]
Masking low complexity seeds...  [0.247s]
Searching alignments...  [32.958s]
Deallocating memory...  [0s]
Processing query block 1, reference block 6/14, shape 2/2, index chunk 4/4.
Building reference seed array...  [10.403s]
Building query seed array...  [2.066s]
Computing hash join...  [6.626s]
Masking low complexity seeds...  [0.285s]
Searching alignments...  [29.329s]
Deallocating memory...  [0s]
Deallocating buffers...  [1.705s]
Clearing query masking...  [1.595s]
Opening temporary output file...  [0s]
Computing alignments... Loading trace points...  [6.247s]
Sorting trace points...  [1.225s]
Computing alignments...  [29.902s]
Deallocating buffers...  [0.013s]
Loading trace points...  [0.058s]
Sorting trace points...  [0.876s]
Computing alignments...  [30.622s]
Deallocating buffers...  [0.022s]
Loading trace points...  [0.057s]
Sorting trace points...  [1.181s]
Computing alignments...  [30.099s]
Deallocating buffers...  [0.013s]
Loading trace points...  [0.073s]
Sorting trace points...  [1.085s]
Computing alignments...  [29.435s]
Deallocating buffers...  [0.016s]
Loading trace points...  [0.069s]
Sorting trace points...  [0.939s]
Computing alignments...  [29.61s]
Deallocating buffers...  [0.013s]
Loading trace points...  [0s]
Sorting trace points...  [1.109s]
Computing alignments...  [29.469s]
Deallocating buffers...  [0.016s]
Loading trace points...  [0.073s]
Sorting trace points...  [1.122s]
Computing alignments...  [30.04s]
Deallocating buffers...  [0.013s]
Loading trace points...  [0.074s]
Sorting trace points...  [1.142s]
Computing alignments...  [29.615s]
Deallocating buffers...  [0.016s]
Loading trace points...  [0.082s]
Sorting trace points...  [1.147s]
Computing alignments...  [30.344s]
Deallocating buffers...  [0.016s]
Loading trace points...  [0.075s]
Sorting trace points...  [1.233s]
Computing alignments...  [32.126s]
Deallocating buffers...  [0.013s]
Loading trace points...  [0.069s]
Sorting trace points...  [1.252s]
Computing alignments...  [32.705s]
Deallocating buffers...  [0.014s]
Loading trace points...  [0.058s]
Sorting trace points...  [1.1s]
Computing alignments...  [32.185s]
Deallocating buffers...  [0.017s]
Loading trace points...  [0.087s]
Sorting trace points...  [0.916s]
Computing alignments...  [32.057s]
Deallocating buffers...  [0.015s]
Loading trace points...  [0.043s]
Sorting trace points...  [1.237s]
Computing alignments...  [32.211s]
Deallocating buffers...  [0.017s]
Loading trace points...  [0.075s]
Sorting trace points...  [1.22s]
Computing alignments...  [32.132s]
Deallocating buffers...  [0.017s]
Loading trace points...  [0s]
Sorting trace points...  [1.033s]
Computing alignments...  [34.691s]
Deallocating buffers...  [0.052s]
Loading trace points...  [0s]
 [522.803s]
Deallocating reference...  [0.067s]
Loading reference sequences...  [29.331s]
Masking reference...  [30.973s]
Initializing dictionary...  [0.077s]
Initializing temporary storage...  [0.007s]
Building reference histograms...  [32.829s]
Allocating buffers...  [0s]
Processing query block 1, reference block 7/14, shape 1/2, index chunk 1/4.
Building reference seed array...  [10.371s]
Building query seed array...  [1.97s]
Computing hash join...  [6.576s]
Masking low complexity seeds...  [0.267s]
Searching alignments...  [76.889s]
Deallocating memory...  [0s]
Processing query block 1, reference block 7/14, shape 1/2, index chunk 2/4.
Building reference seed array...  [13.677s]
Building query seed array...  [2.98s]
Computing hash join...  [6.064s]
Masking low complexity seeds...  [0.299s]
Searching alignments...  [48.832s]
Deallocating memory...  [0s]
Processing query block 1, reference block 7/14, shape 1/2, index chunk 3/4.
Building reference seed array...  [14.401s]
Building query seed array...  [2.66s]
Computing hash join...  [5.742s]
Masking low complexity seeds...  [0.286s]
Searching alignments...  [43.01s]
Deallocating memory...  [0s]
Processing query block 1, reference block 7/14, shape 1/2, index chunk 4/4.
Building reference seed array...  [11.307s]
Building query seed array...  [2.259s]
Computing hash join...  [6.026s]
Masking low complexity seeds...  [0.284s]
Searching alignments...  [38.088s]
Deallocating memory...  [0s]
Processing query block 1, reference block 7/14, shape 2/2, index chunk 1/4.
Building reference seed array...  [10.718s]
Building query seed array...  [2.005s]
Computing hash join...  [5.83s]
Masking low complexity seeds...  [0.285s]
Searching alignments...  [40.544s]
Deallocating memory...  [0s]
Processing query block 1, reference block 7/14, shape 2/2, index chunk 2/4.
Building reference seed array...  [12.945s]
Building query seed array...  [2.346s]
Computing hash join...  [6.113s]
Masking low complexity seeds...  [0.267s]
Searching alignments...  [31.521s]
Deallocating memory...  [0s]
Processing query block 1, reference block 7/14, shape 2/2, index chunk 3/4.
Building reference seed array...  [13.642s]
Building query seed array...  [2.38s]
Computing hash join...  [5.857s]
Masking low complexity seeds...  [0.29s]
Searching alignments...  [34.528s]
Deallocating memory...  [0s]
Processing query block 1, reference block 7/14, shape 2/2, index chunk 4/4.
Building reference seed array...  [10.57s]
Building query seed array...  [1.966s]
Computing hash join...  [5.67s]
Masking low complexity seeds...  [0.278s]
Searching alignments...  [30.102s]
Deallocating memory...  [0s]
Deallocating buffers...  [2.281s]
Clearing query masking...  [1.595s]
Opening temporary output file...  [0s]
Computing alignments... Loading trace points...  [6.17s]
Sorting trace points...  [1.222s]
Computing alignments...  [30.279s]
Deallocating buffers...  [0.015s]
Loading trace points...  [0.05s]
Sorting trace points...  [0.88s]
Computing alignments...  [30.632s]
Deallocating buffers...  [0.025s]
Loading trace points...  [0.107s]
Sorting trace points...  [1.036s]
Computing alignments...  [30.476s]
Deallocating buffers...  [0.015s]
Loading trace points...  [0.686s]
Sorting trace points...  [1.151s]
Computing alignments...  [29.7s]
Deallocating buffers...  [0.015s]
Loading trace points...  [0.068s]
Sorting trace points...  [1.151s]
Computing alignments...  [29.899s]
Deallocating buffers...  [0.013s]
Loading trace points...  [0.045s]
Sorting trace points...  [1.142s]
Computing alignments...  [29.74s]
Deallocating buffers...  [0.013s]
Loading trace points...  [0.138s]
Sorting trace points...  [1.157s]
Computing alignments...  [30.187s]
Deallocating buffers...  [0.016s]
Loading trace points...  [0.065s]
Sorting trace points...  [0.818s]
Computing alignments...  [29.857s]
Deallocating buffers...  [0.014s]
Loading trace points...  [0.076s]
Sorting trace points...  [1.156s]
Computing alignments...  [30.653s]
Deallocating buffers...  [0.013s]
Loading trace points...  [0.083s]
Sorting trace points...  [0.977s]
Computing alignments...  [32.324s]
Deallocating buffers...  [0.016s]
Loading trace points...  [0.051s]
Sorting trace points...  [1.262s]
Computing alignments...  [32.742s]
Deallocating buffers...  [0.017s]
Loading trace points...  [0.075s]
Sorting trace points...  [1.447s]
Computing alignments...  [32.229s]
Deallocating buffers...  [0.114s]
Loading trace points...  [0.072s]
Sorting trace points...  [1.256s]
Computing alignments...  [32.496s]
Deallocating buffers...  [0.014s]
Loading trace points...  [0.095s]
Sorting trace points...  [1.218s]
Computing alignments...  [32.483s]
Deallocating buffers...  [0.017s]
Loading trace points...  [0.077s]
Sorting trace points...  [1.224s]
Computing alignments...  [33.011s]
Deallocating buffers...  [0.026s]
Loading trace points...  [0s]
Sorting trace points...  [1.282s]
Computing alignments...  [35.06s]
Deallocating buffers...  [0.046s]
Loading trace points...  [0s]
 [528.593s]
Deallocating reference...  [0.099s]
Loading reference sequences...  [29.403s]
Masking reference...  [30.965s]
Initializing dictionary...  [0.077s]
Initializing temporary storage...  [0.007s]
Building reference histograms...  [32.744s]
Allocating buffers...  [0s]
Processing query block 1, reference block 8/14, shape 1/2, index chunk 1/4.
Building reference seed array...  [10.43s]
Building query seed array...  [2.035s]
Computing hash join...  [6.957s]
Masking low complexity seeds...  [0.265s]
Searching alignments...  [74.393s]
Deallocating memory...  [0s]
Processing query block 1, reference block 8/14, shape 1/2, index chunk 2/4.
Building reference seed array...  [13.102s]
Building query seed array...  [2.889s]
Computing hash join...  [7.075s]
Masking low complexity seeds...  [0.264s]
Searching alignments...  [48.012s]
Deallocating memory...  [0s]
Processing query block 1, reference block 8/14, shape 1/2, index chunk 3/4.
Building reference seed array...  [13.984s]
Building query seed array...  [2.79s]
Computing hash join...  [6.61s]
Masking low complexity seeds...  [0.319s]
Searching alignments...  [43.052s]
Deallocating memory...  [0s]
Processing query block 1, reference block 8/14, shape 1/2, index chunk 4/4.
Building reference seed array...  [10.502s]
Building query seed array...  [2.294s]
Computing hash join...  [7.272s]
Masking low complexity seeds...  [0.262s]
Searching alignments...  [39.114s]
Deallocating memory...  [0s]
Processing query block 1, reference block 8/14, shape 2/2, index chunk 1/4.
Building reference seed array...  [10.404s]
Building query seed array...  [1.965s]
Computing hash join...  [7.016s]
Masking low complexity seeds...  [0.271s]
Searching alignments...  [39.657s]
Deallocating memory...  [0s]
Processing query block 1, reference block 8/14, shape 2/2, index chunk 2/4.
Building reference seed array...  [12.537s]
Building query seed array...  [2.251s]
Computing hash join...  [6.471s]
Masking low complexity seeds...  [0.243s]
Searching alignments...  [31.157s]
Deallocating memory...  [0s]
Processing query block 1, reference block 8/14, shape 2/2, index chunk 3/4.
Building reference seed array...  [13.595s]
Building query seed array...  [2.561s]
Computing hash join...  [7.175s]
Masking low complexity seeds...  [0.312s]
Searching alignments...  [34.245s]
Deallocating memory...  [0s]
Processing query block 1, reference block 8/14, shape 2/2, index chunk 4/4.
Building reference seed array...  [10.117s]
Building query seed array...  [2.001s]
Computing hash join...  [6.815s]
Masking low complexity seeds...  [0.305s]
Searching alignments...  [29.576s]
Deallocating memory...  [0s]
Deallocating buffers...  [2.142s]
Clearing query masking...  [1.604s]
Opening temporary output file...  [0s]
Computing alignments... Loading trace points...  [6.22s]
Sorting trace points...  [1.22s]
Computing alignments...  [30.175s]
Deallocating buffers...  [0.013s]
Loading trace points...  [0.078s]
Sorting trace points...  [1.139s]
Computing alignments...  [30.538s]
Deallocating buffers...  [0.023s]
Loading trace points...  [0.078s]
Sorting trace points...  [1.074s]
Computing alignments...  [30.334s]
Deallocating buffers...  [0.015s]
Loading trace points...  [0.054s]
Sorting trace points...  [1.126s]
Computing alignments...  [29.589s]
Deallocating buffers...  [0.012s]
Loading trace points...  [0.117s]
Sorting trace points...  [1.054s]
Computing alignments...  [29.855s]
Deallocating buffers...  [0.013s]
Loading trace points...  [0.052s]
Sorting trace points...  [1.055s]
Computing alignments...  [29.793s]
Deallocating buffers...  [0.013s]
Loading trace points...  [0.078s]
Sorting trace points...  [0.959s]
Computing alignments...  [30.18s]
Deallocating buffers...  [0.014s]
Loading trace points...  [0.607s]
Sorting trace points...  [0.958s]
Computing alignments...  [29.819s]
Deallocating buffers...  [0.014s]
Loading trace points...  [0.047s]
Sorting trace points...  [1.168s]
Computing alignments...  [30.54s]
Deallocating buffers...  [0.013s]
Loading trace points...  [0.103s]
Sorting trace points...  [1.205s]
Computing alignments...  [32.23s]
Deallocating buffers...  [0.017s]
Loading trace points...  [0.037s]
Sorting trace points...  [1.084s]
Computing alignments...  [32.755s]
Deallocating buffers...  [0.017s]
Loading trace points...  [0.077s]
Sorting trace points...  [1.173s]
Computing alignments...  [32.255s]
Deallocating buffers...  [0.017s]
Loading trace points...  [0.06s]
Sorting trace points...  [1.362s]
Computing alignments...  [32.361s]
Deallocating buffers...  [0.063s]
Loading trace points...  [0.051s]
Sorting trace points...  [1.053s]
Computing alignments...  [32.353s]
Deallocating buffers...  [0.016s]
Loading trace points...  [0.061s]
Sorting trace points...  [1.247s]
Computing alignments...  [32.4s]
Deallocating buffers...  [0.014s]
Loading trace points...  [0s]
Sorting trace points...  [1.224s]
Computing alignments...  [35.395s]
Deallocating buffers...  [0.058s]
Loading trace points...  [0s]
 [526.95s]
Deallocating reference...  [0.08s]
Loading reference sequences...  [30.114s]
Masking reference...  [30.958s]
Initializing dictionary...  [0.077s]
Initializing temporary storage...  [0.007s]
Building reference histograms...  [33.154s]
Allocating buffers...  [0s]
Processing query block 1, reference block 9/14, shape 1/2, index chunk 1/4.
Building reference seed array...  [10.333s]
Building query seed array...  [2.18s]
Computing hash join...  [7.254s]
Masking low complexity seeds...  [0.265s]
Searching alignments...  [73.734s]
Deallocating memory...  [0s]
Processing query block 1, reference block 9/14, shape 1/2, index chunk 2/4.
Building reference seed array...  [13.197s]
Building query seed array...  [3.017s]
Computing hash join...  [7.047s]
Masking low complexity seeds...  [0.264s]
Searching alignments...  [47.451s]
Deallocating memory...  [0s]
Processing query block 1, reference block 9/14, shape 1/2, index chunk 3/4.
Building reference seed array...  [14.11s]
Building query seed array...  [2.777s]
Computing hash join...  [6.456s]
Masking low complexity seeds...  [0.29s]
Searching alignments...  [43.575s]
Deallocating memory...  [0s]
Processing query block 1, reference block 9/14, shape 1/2, index chunk 4/4.
Building reference seed array...  [10.41s]
Building query seed array...  [2.237s]
Computing hash join...  [7.091s]
Masking low complexity seeds...  [0.3s]
Searching alignments...  [38.862s]
Deallocating memory...  [0s]
Processing query block 1, reference block 9/14, shape 2/2, index chunk 1/4.
Building reference seed array...  [10.514s]
Building query seed array...  [2.1s]
Computing hash join...  [6.493s]
Masking low complexity seeds...  [0.289s]
Searching alignments...  [41.284s]
Deallocating memory...  [0s]
Processing query block 1, reference block 9/14, shape 2/2, index chunk 2/4.
Building reference seed array...  [12.404s]
Building query seed array...  [2.227s]
Computing hash join...  [7.001s]
Masking low complexity seeds...  [0.26s]
Searching alignments...  [31.087s]
Deallocating memory...  [0s]
Processing query block 1, reference block 9/14, shape 2/2, index chunk 3/4.
Building reference seed array...  [13.61s]
Building query seed array...  [2.537s]
Computing hash join...  [6.754s]
Masking low complexity seeds...  [0.3s]
Searching alignments...  [34.48s]
Deallocating memory...  [0s]
Processing query block 1, reference block 9/14, shape 2/2, index chunk 4/4.
Building reference seed array...  [10.435s]
Building query seed array...  [1.978s]
Computing hash join...  [6.568s]
Masking low complexity seeds...  [0.28s]
Searching alignments...  [30.409s]
Deallocating memory...  [0s]
Deallocating buffers...  [1.909s]
Clearing query masking...  [1.608s]
Opening temporary output file...  [0s]
Computing alignments... Loading trace points...  [6.188s]
Sorting trace points...  [1.177s]
Computing alignments...  [30.3s]
Deallocating buffers...  [0.015s]
Loading trace points...  [0.076s]
Sorting trace points...  [1.111s]
Computing alignments...  [30.723s]
Deallocating buffers...  [0.28s]
Loading trace points...  [0.078s]
Sorting trace points...  [1.206s]
Computing alignments...  [30.367s]
Deallocating buffers...  [0.016s]
Loading trace points...  [0.081s]
Sorting trace points...  [0.795s]
Computing alignments...  [29.471s]
Deallocating buffers...  [0.014s]
Loading trace points...  [0.084s]
Sorting trace points...  [0.982s]
Computing alignments...  [29.637s]
Deallocating buffers...  [0.013s]
Loading trace points...  [0.047s]
Sorting trace points...  [0.801s]
Computing alignments...  [29.536s]
Deallocating buffers...  [0.014s]
Loading trace points...  [0.114s]
Sorting trace points...  [1.169s]
Computing alignments...  [29.979s]
Deallocating buffers...  [0.013s]
Loading trace points...  [0.075s]
Sorting trace points...  [1.141s]
Computing alignments...  [29.661s]
Deallocating buffers...  [0.013s]
Loading trace points...  [0.043s]
Sorting trace points...  [0.821s]
Computing alignments...  [30.477s]
Deallocating buffers...  [0.015s]
Loading trace points...  [0.089s]
Sorting trace points...  [1.189s]
Computing alignments...  [32.229s]
Deallocating buffers...  [0.013s]
Loading trace points...  [0.054s]
Sorting trace points...  [1.188s]
Computing alignments...  [32.683s]
Deallocating buffers...  [0.017s]
Loading trace points...  [0.058s]
Sorting trace points...  [1.147s]
Computing alignments...  [32.057s]
Deallocating buffers...  [0.014s]
Loading trace points...  [0.081s]
Sorting trace points...  [1.106s]
Computing alignments...  [32.357s]
Deallocating buffers...  [0.014s]
Loading trace points...  [0.048s]
Sorting trace points...  [1.147s]
Computing alignments...  [32.328s]
Deallocating buffers...  [0.014s]
Loading trace points...  [0.082s]
Sorting trace points...  [1.054s]
Computing alignments...  [32.427s]
Deallocating buffers...  [0.016s]
Loading trace points...  [0s]
Sorting trace points...  [1.223s]
Computing alignments...  [34.862s]
Deallocating buffers...  [0.042s]
Loading trace points...  [0s]
 [524.371s]
Deallocating reference...  [0.076s]
Loading reference sequences...  [29.861s]
Masking reference...  [31.943s]
Initializing dictionary...  [0.077s]
Initializing temporary storage...  [0.007s]
Building reference histograms...  [32.436s]
Allocating buffers...  [0s]
Processing query block 1, reference block 10/14, shape 1/2, index chunk 1/4.
Building reference seed array...  [10.427s]
Building query seed array...  [2.041s]
Computing hash join...  [7.47s]
Masking low complexity seeds...  [0.26s]
Searching alignments...  [76.992s]
Deallocating memory...  [0s]
Processing query block 1, reference block 10/14, shape 1/2, index chunk 2/4.
Building reference seed array...  [12.868s]
Building query seed array...  [3.006s]
Computing hash join...  [7.164s]
Masking low complexity seeds...  [0.26s]
Searching alignments...  [47.864s]
Deallocating memory...  [0s]
Processing query block 1, reference block 10/14, shape 1/2, index chunk 3/4.
Building reference seed array...  [13.555s]
Building query seed array...  [2.66s]
Computing hash join...  [6.689s]
Masking low complexity seeds...  [0.338s]
Searching alignments...  [43s]
Deallocating memory...  [0s]
Processing query block 1, reference block 10/14, shape 1/2, index chunk 4/4.
Building reference seed array...  [11.231s]
Building query seed array...  [2.338s]
Computing hash join...  [6.917s]
Masking low complexity seeds...  [0.275s]
Searching alignments...  [37.863s]
Deallocating memory...  [0s]
Processing query block 1, reference block 10/14, shape 2/2, index chunk 1/4.
Building reference seed array...  [10.594s]
Building query seed array...  [2.012s]
Computing hash join...  [6.543s]
Masking low complexity seeds...  [0.271s]
Searching alignments...  [42.129s]
Deallocating memory...  [0s]
Processing query block 1, reference block 10/14, shape 2/2, index chunk 2/4.
Building reference seed array...  [13.487s]
Building query seed array...  [2.383s]
Computing hash join...  [6.98s]
Masking low complexity seeds...  [0.248s]
Searching alignments...  [31.577s]
Deallocating memory...  [0s]
Processing query block 1, reference block 10/14, shape 2/2, index chunk 3/4.
Building reference seed array...  [13.812s]
Building query seed array...  [2.51s]
Computing hash join...  [7.065s]
Masking low complexity seeds...  [0.255s]
Searching alignments...  [36.216s]
Deallocating memory...  [0s]
Processing query block 1, reference block 10/14, shape 2/2, index chunk 4/4.
Building reference seed array...  [10.65s]
Building query seed array...  [2.06s]
Computing hash join...  [6.932s]
Masking low complexity seeds...  [0.258s]
Searching alignments...  [30.258s]
Deallocating memory...  [0s]
Deallocating buffers...  [1.993s]
Clearing query masking...  [1.609s]
Opening temporary output file...  [0s]
Computing alignments... Loading trace points...  [6.245s]
Sorting trace points...  [1.131s]
Computing alignments...  [30.039s]
Deallocating buffers...  [0.016s]
Loading trace points...  [0.057s]
Sorting trace points...  [1.13s]
Computing alignments...  [30.533s]
Deallocating buffers...  [0.024s]
Loading trace points...  [0.077s]
Sorting trace points...  [1.176s]
Computing alignments...  [30.269s]
Deallocating buffers...  [0.013s]
Loading trace points...  [0.078s]
Sorting trace points...  [1.072s]
Computing alignments...  [29.601s]
Deallocating buffers...  [0.013s]
Loading trace points...  [0.143s]
Sorting trace points...  [1.127s]
Computing alignments...  [29.777s]
Deallocating buffers...  [0.012s]
Loading trace points...  [0.049s]
Sorting trace points...  [0.913s]
Computing alignments...  [29.667s]
Deallocating buffers...  [0.015s]
Loading trace points...  [0.065s]
Sorting trace points...  [1.124s]
Computing alignments...  [30.094s]
Deallocating buffers...  [0.013s]
Loading trace points...  [0.101s]
Sorting trace points...  [1.079s]
Computing alignments...  [29.716s]
Deallocating buffers...  [0.013s]
Loading trace points...  [0.049s]
Sorting trace points...  [1.109s]
Computing alignments...  [30.572s]
Deallocating buffers...  [0.016s]
Loading trace points...  [0.706s]
Sorting trace points...  [1.339s]
Computing alignments...  [32.155s]
Deallocating buffers...  [0.014s]
Loading trace points...  [0.063s]
Sorting trace points...  [0.941s]
Computing alignments...  [32.491s]
Deallocating buffers...  [0.016s]
Loading trace points...  [0.069s]
Sorting trace points...  [1.26s]
Computing alignments...  [32.082s]
Deallocating buffers...  [0.014s]
Loading trace points...  [0.055s]
Sorting trace points...  [1.251s]
Computing alignments...  [32.327s]
Deallocating buffers...  [0.014s]
Loading trace points...  [0.088s]
Sorting trace points...  [1.056s]
Computing alignments...  [32.204s]
Deallocating buffers...  [0.016s]
Loading trace points...  [0.067s]
Sorting trace points...  [1.215s]
Computing alignments...  [32.281s]
Deallocating buffers...  [0.014s]
Loading trace points...  [0s]
Sorting trace points...  [1.225s]
Computing alignments...  [33.917s]
Deallocating buffers...  [0.044s]
Loading trace points...  [0s]
 [524.393s]
Deallocating reference...  [0.061s]
Loading reference sequences...  [29.41s]
Masking reference...  [32.124s]
Initializing dictionary...  [0.078s]
Initializing temporary storage...  [0.007s]
Building reference histograms...  [32.278s]
Allocating buffers...  [0s]
Processing query block 1, reference block 11/14, shape 1/2, index chunk 1/4.
Building reference seed array...  [10.09s]
Building query seed array...  [2.036s]
Computing hash join...  [7.298s]
Masking low complexity seeds...  [0.259s]
Searching alignments...  [75.086s]
Deallocating memory...  [0s]
Processing query block 1, reference block 11/14, shape 1/2, index chunk 2/4.
Building reference seed array...  [12.835s]
Building query seed array...  [3.013s]
Computing hash join...  [6.506s]
Masking low complexity seeds...  [0.329s]
Searching alignments...  [48.803s]
Deallocating memory...  [0s]
Processing query block 1, reference block 11/14, shape 1/2, index chunk 3/4.
Building reference seed array...  [13.986s]
Building query seed array...  [2.677s]
Computing hash join...  [7.262s]
Masking low complexity seeds...  [0.266s]
Searching alignments...  [42.941s]
Deallocating memory...  [0s]
Processing query block 1, reference block 11/14, shape 1/2, index chunk 4/4.
Building reference seed array...  [10.786s]
Building query seed array...  [2.428s]
Computing hash join...  [6.566s]
Masking low complexity seeds...  [0.303s]
Searching alignments...  [37.296s]
Deallocating memory...  [0s]
Processing query block 1, reference block 11/14, shape 2/2, index chunk 1/4.
Building reference seed array...  [10.864s]
Building query seed array...  [2.003s]
Computing hash join...  [6.414s]
Masking low complexity seeds...  [0.293s]
Searching alignments...  [41.044s]
Deallocating memory...  [0s]
Processing query block 1, reference block 11/14, shape 2/2, index chunk 2/4.
Building reference seed array...  [12.797s]
Building query seed array...  [2.297s]
Computing hash join...  [6.758s]
Masking low complexity seeds...  [0.265s]
Searching alignments...  [31.674s]
Deallocating memory...  [0s]
Processing query block 1, reference block 11/14, shape 2/2, index chunk 3/4.
Building reference seed array...  [14.169s]
Building query seed array...  [2.554s]
Computing hash join...  [6.561s]
Masking low complexity seeds...  [0.28s]
Searching alignments...  [33.083s]
Deallocating memory...  [0s]
Processing query block 1, reference block 11/14, shape 2/2, index chunk 4/4.
Building reference seed array...  [10.514s]
Building query seed array...  [2.031s]
Computing hash join...  [6.307s]
Masking low complexity seeds...  [0.251s]
Searching alignments...  [28.617s]
Deallocating memory...  [0s]
Deallocating buffers...  [2.151s]
Clearing query masking...  [1.774s]
Opening temporary output file...  [0s]
Computing alignments... Loading trace points...  [6.482s]
Sorting trace points...  [1.155s]
Computing alignments...  [30.025s]
Deallocating buffers...  [0.014s]
Loading trace points...  [0.07s]
Sorting trace points...  [1.034s]
Computing alignments...  [30.544s]
Deallocating buffers...  [0.182s]
Loading trace points...  [0.114s]
Sorting trace points...  [1.09s]
Computing alignments...  [30.115s]
Deallocating buffers...  [0.015s]
Loading trace points...  [0.076s]
Sorting trace points...  [1.102s]
Computing alignments...  [29.387s]
Deallocating buffers...  [0.013s]
Loading trace points...  [0.09s]
Sorting trace points...  [1.127s]
Computing alignments...  [29.541s]
Deallocating buffers...  [0.012s]
Loading trace points...  [0.057s]
Sorting trace points...  [0.978s]
Computing alignments...  [29.365s]
Deallocating buffers...  [0.013s]
Loading trace points...  [0.094s]
Sorting trace points...  [1.077s]
Computing alignments...  [29.951s]
Deallocating buffers...  [0.013s]
Loading trace points...  [0.073s]
Sorting trace points...  [0.975s]
Computing alignments...  [29.509s]
Deallocating buffers...  [0.015s]
Loading trace points...  [0.001s]
Sorting trace points...  [0.955s]
Computing alignments...  [30.18s]
Deallocating buffers...  [0.015s]
Loading trace points...  [0.075s]
Sorting trace points...  [1.19s]
Computing alignments...  [31.857s]
Deallocating buffers...  [0.017s]
Loading trace points...  [0.108s]
Sorting trace points...  [1.26s]
Computing alignments...  [32.309s]
Deallocating buffers...  [0.014s]
Loading trace points...  [0.049s]
Sorting trace points...  [1.216s]
Computing alignments...  [31.805s]
Deallocating buffers...  [0.014s]
Loading trace points...  [0.056s]
Sorting trace points...  [1.292s]
Computing alignments...  [31.975s]
Deallocating buffers...  [0.014s]
Loading trace points...  [0.054s]
Sorting trace points...  [1.366s]
Computing alignments...  [32.045s]
Deallocating buffers...  [0.151s]
Loading trace points...  [0.08s]
Sorting trace points...  [1.258s]
Computing alignments...  [32.133s]
Deallocating buffers...  [0.017s]
Loading trace points...  [0s]
Sorting trace points...  [1.064s]
Computing alignments...  [33.875s]
Deallocating buffers...  [0.033s]
Loading trace points...  [0s]
 [521.084s]
Deallocating reference...  [0.063s]
Loading reference sequences...  [31.098s]
Masking reference...  [30.951s]
Initializing dictionary...  [0.077s]
Initializing temporary storage...  [0.006s]
Building reference histograms...  [32.792s]
Allocating buffers...  [0s]
Processing query block 1, reference block 12/14, shape 1/2, index chunk 1/4.
Building reference seed array...  [10.409s]
Building query seed array...  [2.072s]
Computing hash join...  [7.464s]
Masking low complexity seeds...  [0.272s]
Searching alignments...  [75.316s]
Deallocating memory...  [0s]
Processing query block 1, reference block 12/14, shape 1/2, index chunk 2/4.
Building reference seed array...  [12.875s]
Building query seed array...  [2.938s]
Computing hash join...  [7.344s]
Masking low complexity seeds...  [0.284s]
Searching alignments...  [47.878s]
Deallocating memory...  [0s]
Processing query block 1, reference block 12/14, shape 1/2, index chunk 3/4.
Building reference seed array...  [13.403s]
Building query seed array...  [2.698s]
Computing hash join...  [6.647s]
Masking low complexity seeds...  [0.308s]
Searching alignments...  [44.193s]
Deallocating memory...  [0s]
Processing query block 1, reference block 12/14, shape 1/2, index chunk 4/4.
Building reference seed array...  [10.505s]
Building query seed array...  [2.326s]
Computing hash join...  [7.181s]
Masking low complexity seeds...  [0.263s]
Searching alignments...  [38.456s]
Deallocating memory...  [0s]
Processing query block 1, reference block 12/14, shape 2/2, index chunk 1/4.
Building reference seed array...  [10.622s]
Building query seed array...  [2.112s]
Computing hash join...  [7.077s]
Masking low complexity seeds...  [0.25s]
Searching alignments...  [40.3s]
Deallocating memory...  [0s]
Processing query block 1, reference block 12/14, shape 2/2, index chunk 2/4.
Building reference seed array...  [12.587s]
Building query seed array...  [2.296s]
Computing hash join...  [6.892s]
Masking low complexity seeds...  [0.286s]
Searching alignments...  [31.242s]
Deallocating memory...  [0s]
Processing query block 1, reference block 12/14, shape 2/2, index chunk 3/4.
Building reference seed array...  [13.648s]
Building query seed array...  [2.49s]
Computing hash join...  [6.985s]
Masking low complexity seeds...  [0.299s]
Searching alignments...  [35.052s]
Deallocating memory...  [0s]
Processing query block 1, reference block 12/14, shape 2/2, index chunk 4/4.
Building reference seed array...  [10.308s]
Building query seed array...  [1.997s]
Computing hash join...  [6.766s]
Masking low complexity seeds...  [0.301s]
Searching alignments...  [28.852s]
Deallocating memory...  [0s]
Deallocating buffers...  [2.301s]
Clearing query masking...  [1.608s]
Opening temporary output file...  [0s]
Computing alignments... Loading trace points...  [6.001s]
Sorting trace points...  [1.26s]
Computing alignments...  [29.891s]
Deallocating buffers...  [0.013s]
Loading trace points...  [0.067s]
Sorting trace points...  [0.802s]
Computing alignments...  [30.388s]
Deallocating buffers...  [0.021s]
Loading trace points...  [0.07s]
Sorting trace points...  [1.012s]
Computing alignments...  [30.187s]
Deallocating buffers...  [0.014s]
Loading trace points...  [0.092s]
Sorting trace points...  [1.107s]
Computing alignments...  [29.316s]
Deallocating buffers...  [0.013s]
Loading trace points...  [0.082s]
Sorting trace points...  [1.029s]
Computing alignments...  [29.568s]
Deallocating buffers...  [0.013s]
Loading trace points...  [0.08s]
Sorting trace points...  [1.15s]
Computing alignments...  [29.373s]
Deallocating buffers...  [0.013s]
Loading trace points...  [0.084s]
Sorting trace points...  [1.053s]
Computing alignments...  [29.899s]
Deallocating buffers...  [0.097s]
Loading trace points...  [0.094s]
Sorting trace points...  [1.16s]
Computing alignments...  [29.534s]
Deallocating buffers...  [0.016s]
Loading trace points...  [0.068s]
Sorting trace points...  [0.834s]
Computing alignments...  [30.292s]
Deallocating buffers...  [0.015s]
Loading trace points...  [0.117s]
Sorting trace points...  [1.286s]
Computing alignments...  [32.01s]
Deallocating buffers...  [0.014s]
Loading trace points...  [0.06s]
Sorting trace points...  [1.456s]
Computing alignments...  [32.452s]
Deallocating buffers...  [0.129s]
Loading trace points...  [0.098s]
Sorting trace points...  [0.95s]
Computing alignments...  [32.02s]
Deallocating buffers...  [0.016s]
Loading trace points...  [0.073s]
Sorting trace points...  [1.25s]
Computing alignments...  [32.205s]
Deallocating buffers...  [0.017s]
Loading trace points...  [0.049s]
Sorting trace points...  [1.054s]
Computing alignments...  [32.183s]
Deallocating buffers...  [0.016s]
Loading trace points...  [0.12s]
Sorting trace points...  [1.22s]
Computing alignments...  [32.698s]
Deallocating buffers...  [0.024s]
Loading trace points...  [0s]
Sorting trace points...  [1.106s]
Computing alignments...  [34.064s]
Deallocating buffers...  [0.024s]
Loading trace points...  [0s]
 [521.701s]
Deallocating reference...  [0.064s]
Loading reference sequences...  [30.067s]
Masking reference...  [30.899s]
Initializing dictionary...  [0.077s]
Initializing temporary storage...  [0.006s]
Building reference histograms...  [33.079s]
Allocating buffers...  [0s]
Processing query block 1, reference block 13/14, shape 1/2, index chunk 1/4.
Building reference seed array...  [10.173s]
Building query seed array...  [2.076s]
Computing hash join...  [6.751s]
Masking low complexity seeds...  [0.258s]
Searching alignments...  [76.581s]
Deallocating memory...  [0s]
Processing query block 1, reference block 13/14, shape 1/2, index chunk 2/4.
Building reference seed array...  [13.867s]
Building query seed array...  [2.926s]
Computing hash join...  [7.045s]
Masking low complexity seeds...  [0.278s]
Searching alignments...  [48.069s]
Deallocating memory...  [0s]
Processing query block 1, reference block 13/14, shape 1/2, index chunk 3/4.
Building reference seed array...  [14.481s]
Building query seed array...  [2.655s]
Computing hash join...  [6.609s]
Masking low complexity seeds...  [0.286s]
Searching alignments...  [42.81s]
Deallocating memory...  [0s]
Processing query block 1, reference block 13/14, shape 1/2, index chunk 4/4.
Building reference seed array...  [11.156s]
Building query seed array...  [2.162s]
Computing hash join...  [7.225s]
Masking low complexity seeds...  [0.269s]
Searching alignments...  [38.208s]
Deallocating memory...  [0s]
Processing query block 1, reference block 13/14, shape 2/2, index chunk 1/4.
Building reference seed array...  [10.552s]
Building query seed array...  [1.892s]
Computing hash join...  [6.906s]
Masking low complexity seeds...  [0.259s]
Searching alignments...  [39.999s]
Deallocating memory...  [0s]
Processing query block 1, reference block 13/14, shape 2/2, index chunk 2/4.
Building reference seed array...  [12.415s]
Building query seed array...  [2.252s]
Computing hash join...  [6.613s]
Masking low complexity seeds...  [0.238s]
Searching alignments...  [31.027s]
Deallocating memory...  [0s]
Processing query block 1, reference block 13/14, shape 2/2, index chunk 3/4.
Building reference seed array...  [14.127s]
Building query seed array...  [2.417s]
Computing hash join...  [6.911s]
Masking low complexity seeds...  [0.326s]
Searching alignments...  [34.376s]
Deallocating memory...  [0s]
Processing query block 1, reference block 13/14, shape 2/2, index chunk 4/4.
Building reference seed array...  [10.562s]
Building query seed array...  [1.985s]
Computing hash join...  [6.588s]
Masking low complexity seeds...  [0.29s]
Searching alignments...  [28.575s]
Deallocating memory...  [0s]
Deallocating buffers...  [2.36s]
Clearing query masking...  [1.554s]
Opening temporary output file...  [0s]
Computing alignments... Loading trace points...  [6.066s]
Sorting trace points...  [1.196s]
Computing alignments...  [30.103s]
Deallocating buffers...  [0.013s]
Loading trace points...  [0.064s]
Sorting trace points...  [1.024s]
Computing alignments...  [30.236s]
Deallocating buffers...  [0.021s]
Loading trace points...  [0.41s]
Sorting trace points...  [1.236s]
Computing alignments...  [30.109s]
Deallocating buffers...  [0.017s]
Loading trace points...  [0.086s]
Sorting trace points...  [1.146s]
Computing alignments...  [29.28s]
Deallocating buffers...  [0.038s]
Loading trace points...  [0.078s]
Sorting trace points...  [1.148s]
Computing alignments...  [29.571s]
Deallocating buffers...  [0.013s]
Loading trace points...  [0.054s]
Sorting trace points...  [1.086s]
Computing alignments...  [29.43s]
Deallocating buffers...  [0.016s]
Loading trace points...  [0.089s]
Sorting trace points...  [1.156s]
Computing alignments...  [29.992s]
Deallocating buffers...  [0.016s]
Loading trace points...  [0.073s]
Sorting trace points...  [0.825s]
Computing alignments...  [29.566s]
Deallocating buffers...  [0.014s]
Loading trace points...  [0.067s]
Sorting trace points...  [1.044s]
Computing alignments...  [30.266s]
Deallocating buffers...  [0.016s]
Loading trace points...  [0.091s]
Sorting trace points...  [1.35s]
Computing alignments...  [31.998s]
Deallocating buffers...  [0.161s]
Loading trace points...  [0.048s]
Sorting trace points...  [1.169s]
Computing alignments...  [32.48s]
Deallocating buffers...  [0.014s]
Loading trace points...  [0.079s]
Sorting trace points...  [1.24s]
Computing alignments...  [31.829s]
Deallocating buffers...  [0.017s]
Loading trace points...  [0.103s]
Sorting trace points...  [1.2s]
Computing alignments...  [31.996s]
Deallocating buffers...  [0.017s]
Loading trace points...  [0.049s]
Sorting trace points...  [1.16s]
Computing alignments...  [32.025s]
Deallocating buffers...  [0.017s]
Loading trace points...  [0.112s]
Sorting trace points...  [1.191s]
Computing alignments...  [32.535s]
Deallocating buffers...  [0.024s]
Loading trace points...  [0s]
Sorting trace points...  [1.269s]
Computing alignments...  [33.839s]
Deallocating buffers...  [0.04s]
Loading trace points...  [0s]
 [521.82s]
Deallocating reference...  [0.083s]
Loading reference sequences...  [23.952s]
Masking reference...  [25.11s]
Initializing dictionary...  [0.063s]
Initializing temporary storage...  [0.006s]
Building reference histograms...  [26.459s]
Allocating buffers...  [0s]
Processing query block 1, reference block 14/14, shape 1/2, index chunk 1/4.
Building reference seed array...  [8.353s]
Building query seed array...  [2.104s]
Computing hash join...  [4.951s]
Masking low complexity seeds...  [0.264s]
Searching alignments...  [57.953s]
Deallocating memory...  [0s]
Processing query block 1, reference block 14/14, shape 1/2, index chunk 2/4.
Building reference seed array...  [10.528s]
Building query seed array...  [2.999s]
Computing hash join...  [5.469s]
Masking low complexity seeds...  [0.248s]
Searching alignments...  [37.412s]
Deallocating memory...  [0s]
Processing query block 1, reference block 14/14, shape 1/2, index chunk 3/4.
Building reference seed array...  [10.748s]
Building query seed array...  [2.839s]
Computing hash join...  [5.126s]
Masking low complexity seeds...  [0.261s]
Searching alignments...  [34.777s]
Deallocating memory...  [0s]
Processing query block 1, reference block 14/14, shape 1/2, index chunk 4/4.
Building reference seed array...  [8.361s]
Building query seed array...  [2.275s]
Computing hash join...  [5.174s]
Masking low complexity seeds...  [0.252s]
Searching alignments...  [30.327s]
Deallocating memory...  [0s]
Processing query block 1, reference block 14/14, shape 2/2, index chunk 1/4.
Building reference seed array...  [8.43s]
Building query seed array...  [1.915s]
Computing hash join...  [5.005s]
Masking low complexity seeds...  [0.235s]
Searching alignments...  [33.1s]
Deallocating memory...  [0s]
Processing query block 1, reference block 14/14, shape 2/2, index chunk 2/4.
Building reference seed array...  [10.337s]
Building query seed array...  [2.432s]
Computing hash join...  [4.967s]
Masking low complexity seeds...  [0.241s]
Searching alignments...  [25.737s]
Deallocating memory...  [0s]
Processing query block 1, reference block 14/14, shape 2/2, index chunk 3/4.
Building reference seed array...  [11.075s]
Building query seed array...  [2.389s]
Computing hash join...  [5.48s]
Masking low complexity seeds...  [0.305s]
Searching alignments...  [27.084s]
Deallocating memory...  [0s]
Processing query block 1, reference block 14/14, shape 2/2, index chunk 4/4.
Building reference seed array...  [8.08s]
Building query seed array...  [1.965s]
Computing hash join...  [5.159s]
Masking low complexity seeds...  [0.232s]
Searching alignments...  [23.787s]
Deallocating memory...  [0s]
Deallocating buffers...  [1.046s]
Clearing query masking...  [1.576s]
Opening temporary output file...  [0.001s]
Computing alignments... Loading trace points...  [10.322s]
Sorting trace points...  [1.957s]
Computing alignments...  [48.001s]
Deallocating buffers...  [0.032s]
Loading trace points...  [0.185s]
Sorting trace points...  [1.702s]
Computing alignments...  [47.324s]
Deallocating buffers...  [0.061s]
Loading trace points...  [0.252s]
Sorting trace points...  [1.455s]
Computing alignments...  [46.946s]
Deallocating buffers...  [0.022s]
Loading trace points...  [0.155s]
Sorting trace points...  [1.834s]
Computing alignments...  [47.465s]
Deallocating buffers...  [0.045s]
Loading trace points...  [0.224s]
Sorting trace points...  [1.631s]
Computing alignments...  [49.688s]
Deallocating buffers...  [0.024s]
Loading trace points...  [0.116s]
Sorting trace points...  [2.165s]
Computing alignments...  [51.048s]
Deallocating buffers...  [0.028s]
Loading trace points...  [0.127s]
Sorting trace points...  [1.627s]
Computing alignments...  [51.109s]
Deallocating buffers...  [0.026s]
Loading trace points...  [0s]
Sorting trace points...  [1.837s]
Computing alignments...  [52.291s]
Deallocating buffers...  [0.184s]
Loading trace points...  [0s]
 [420.093s]
Deallocating reference...  [0.056s]
Loading reference sequences...  [0.109s]
Deallocating buffers...  [0s]
Joining output blocks... Joining output blocks...  [2120.93s]
 [2120.93s]
Deallocating queries...  [0.08s]
Loading query sequences...  [0s]
Closing the input file...  [0.019s]
Closing the output file... Loading dictionary...  [5.107s]
 [6.547s]
Closing the database...  [0s]
Cleaning up...  [0s]
Total time = 17877.3s
Reported 2339112619 pairwise alignments, 2339112619 HSPs.
13393021 queries aligned.
DIAMOND BLASTx on /gscratch/srlab/sam/data/P_verrucosa/RNAseq/E8_R2.fastp-trim.20230215.fq.gz complete: E8_R2.blastx.meganized.daa

Now MEGANizing E8_R2.blastx.meganized.daa
Version   MEGAN Community Edition (version 6.22.0, built 19 Feb 2022)
Author(s) Daniel H. Huson
Copyright (C) 2022 Daniel H. Huson. This program comes with ABSOLUTELY NO WARRANTY.
Java version: 17.0.2
Functional classifications to use: EC, EGGNOG, GTDB, INTERPRO2GO, SEED
Loading ncbi.map: 2,396,736
Loading ncbi.tre: 2,396,740
Loading ec.map:     8,200
Loading ec.tre:     8,204
Loading eggnog.map:    30,875
Loading eggnog.tre:    30,986
Loading gtdb.map:   240,103
Loading gtdb.tre:   240,107
Loading interpro2go.map:    14,242
Loading interpro2go.tre:    28,907
Loading seed.map:       961
Loading seed.tre:       962
Meganizing: E8_R2.blastx.meganized.daa
Meganizing init
Annotating DAA file using FAST mode (accession database and first accession per line)
Annotating references
10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (640.9s)
Writing
10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (3.2s)
Binning reads Initializing...
Initializing binning...
Using 'Naive LCA' algorithm for binning: Taxonomy
Using Best-Hit algorithm for binning: SEED
Using Best-Hit algorithm for binning: EGGNOG
Using 'Naive LCA' algorithm for binning: GTDB
Using Best-Hit algorithm for binning: EC
Using Best-Hit algorithm for binning: INTERPRO2GO
Binning reads...
Binning reads Analyzing alignments
10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (4,462.2s)
Total reads:       13,393,021
With hits:          13,393,021 
Alignments:      2,328,498,324
Assig. Taxonomy:    11,771,163
Assig. SEED:           125,285
Assig. EGGNOG:          77,251
Assig. GTDB:           436,609
Assig. EC:           2,014,951
Assig. INTERPRO2GO:  1,232,395
MinSupport set to: 6696
Binning reads Applying min-support & disabled filter to Taxonomy...
10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (0.3s)
Min-supp. changes:       4,609
Binning reads Applying min-support & disabled filter to GTDB...
10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (13.7s)
Min-supp. changes:       3,817
Binning reads Writing classification tables
10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (34.7s)
Binning reads Syncing
100% (0.4s)
Class. Taxonomy:            81
Class. SEED:               535
Class. EGGNOG:           1,872
Class. GTDB:                22
Class. EC:               2,474
Class. INTERPRO2GO:      8,048
Total time:  5,164s
Peak memory: 34 of 195.3G
MEGANization of E8_R2.blastx.meganized.daa completed.


Generating MD5 checksum for /gscratch/srlab/sam/data/P_verrucosa/RNAseq/E9_R1.fastp-trim.20230215.fq.gz...
a9dc5760d043381c6d60df08700d9beb  /gscratch/srlab/sam/data/P_verrucosa/RNAseq/E9_R1.fastp-trim.20230215.fq.gz

Running DIAMOND BLASTx on /gscratch/srlab/sam/data/P_verrucosa/RNAseq/E9_R1.fastp-trim.20230215.fq.gz.

diamond v2.1.1.155 (C) Max Planck Society for the Advancement of Science
Documentation, support and updates available at http://www.diamondsearch.org
Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021)

#CPU threads: 40
Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1)
Temporary directory: 
Percentage range of top alignment score to report hits: 5
Opening the database...  [0.373s]
Database: /gscratch/srlab/blastdbs/20230215-ncbi-nr/20230215-ncbi-nr.dmnd (type: Diamond database, sequences: 526308523, letters: 207134680681)
Block size = 15000000000
Opening the input file...  [0.847s]
Opening the output file...  [0s]
Loading query sequences...  [76.101s]
Masking queries...  [19.4s]
Algorithm: Double-indexed
Building query histograms...  [18.224s]
Loading reference sequences...  [29.186s]
Masking reference...  [32.101s]
Initializing dictionary...  [0.078s]
Initializing temporary storage...  [0.008s]
Building reference histograms...  [31.772s]
Allocating buffers...  [0s]
Processing query block 1, reference block 1/14, shape 1/2, index chunk 1/4.
Building reference seed array...  [10.211s]
Building query seed array...  [2.183s]
Computing hash join...  [6.635s]
Masking low complexity seeds...  [0.249s]
Searching alignments...  [84.254s]
Deallocating memory...  [0s]
Processing query block 1, reference block 1/14, shape 1/2, index chunk 2/4.
Building reference seed array...  [12.824s]
Building query seed array...  [3.028s]
Computing hash join...  [6.432s]
Masking low complexity seeds...  [0.279s]
Searching alignments...  [55.531s]
Deallocating memory...  [0s]
Processing query block 1, reference block 1/14, shape 1/2, index chunk 3/4.
Building reference seed array...  [13.467s]
Building query seed array...  [3.007s]
Computing hash join...  [6.644s]
Masking low complexity seeds...  [0.242s]
Searching alignments...  [46.508s]
Deallocating memory...  [0s]
Processing query block 1, reference block 1/14, shape 1/2, index chunk 4/4.
Building reference seed array...  [10.347s]
Building query seed array...  [2.339s]
Computing hash join...  [6.557s]
Masking low complexity seeds...  [0.251s]
Searching alignments...  [42.051s]
Deallocating memory...  [0s]
Processing query block 1, reference block 1/14, shape 2/2, index chunk 1/4.
Building reference seed array...  [10.28s]
Building query seed array...  [2.248s]
Computing hash join...  [6.306s]
Masking low complexity seeds...  [0.235s]
Searching alignments...  [42.394s]
Deallocating memory...  [0s]
Processing query block 1, reference block 1/14, shape 2/2, index chunk 2/4.
Building reference seed array...  [13.059s]
Building query seed array...  [2.43s]
Computing hash join...  [6.471s]
Masking low complexity seeds...  [0.228s]
Searching alignments...  [33.333s]
Deallocating memory...  [0s]
Processing query block 1, reference block 1/14, shape 2/2, index chunk 3/4.
Building reference seed array...  [13.373s]
Building query seed array...  [2.539s]
Computing hash join...  [6.446s]
Masking low complexity seeds...  [0.241s]
Searching alignments...  [37.327s]
Deallocating memory...  [0s]
Processing query block 1, reference block 1/14, shape 2/2, index chunk 4/4.
Building reference seed array...  [10.712s]
Building query seed array...  [2.088s]
Computing hash join...  [6.492s]
Masking low complexity seeds...  [0.254s]
Searching alignments...  [31.829s]
Deallocating memory...  [0s]
Deallocating buffers...  [1.553s]
Clearing query masking...  [1.736s]
Opening temporary output file...  [0s]
Computing alignments... Loading trace points...  [6.959s]
Sorting trace points...  [1.436s]
Computing alignments...  [34.815s]
Deallocating buffers...  [0.019s]
Loading trace points...  [0.051s]
Sorting trace points...  [1.248s]
Computing alignments...  [34.569s]
Deallocating buffers...  [0.015s]
Loading trace points...  [0.062s]
Sorting trace points...  [1.342s]
Computing alignments...  [34.585s]
Deallocating buffers...  [0.019s]
Loading trace points...  [0.103s]
Sorting trace points...  [1.449s]
Computing alignments...  [35.086s]
Deallocating buffers...  [0.067s]
Loading trace points...  [0.068s]
Sorting trace points...  [1.405s]
Computing alignments...  [35.488s]
Deallocating buffers...  [0.015s]
Loading trace points...  [0s]
Sorting trace points...  [1.35s]
Computing alignments...  [35.765s]
Deallocating buffers...  [0.019s]
Loading trace points...  [0.001s]
Sorting trace points...  [1.233s]
Computing alignments...  [35.13s]
Deallocating buffers...  [0.018s]
Loading trace points...  [0.001s]
Sorting trace points...  [1.234s]
Computing alignments...  [34.922s]
Deallocating buffers...  [0.015s]
Loading trace points...  [0.072s]
Sorting trace points...  [1.326s]
Computing alignments...  [35.197s]
Deallocating buffers...  [0.015s]
Loading trace points...  [0.072s]
Sorting trace points...  [1.289s]
Computing alignments...  [36.08s]
Deallocating buffers...  [0.016s]
Loading trace points...  [0.042s]
Sorting trace points...  [1.394s]
Computing alignments...  [36.095s]
Deallocating buffers...  [0.015s]
Loading trace points...  [0.078s]
Sorting trace points...  [0.981s]
Computing alignments...  [35.955s]
Deallocating buffers...  [0.018s]
Loading trace points...  [0.07s]
Sorting trace points...  [1.223s]
Computing alignments...  [36.089s]
Deallocating buffers...  [0.016s]
Loading trace points...  [0.09s]
Sorting trace points...  [1.154s]
Computing alignments...  [36.262s]
Deallocating buffers...  [0.018s]
Loading trace points...  [0.064s]
Sorting trace points...  [1.21s]
Computing alignments...  [36.376s]
Deallocating buffers...  [0.017s]
Loading trace points...  [0s]
Sorting trace points...  [1.41s]
Computing alignments...  [35.667s]
Deallocating buffers...  [0.015s]
Loading trace points...  [0s]
 [597.003s]
Deallocating reference...  [0.057s]
Loading reference sequences...  [29.33s]
Masking reference...  [30.955s]
Initializing dictionary...  [0.077s]
Initializing temporary storage...  [0.007s]
Building reference histograms...  [32.981s]
Allocating buffers...  [0s]
Processing query block 1, reference block 2/14, shape 1/2, index chunk 1/4.
Building reference seed array...  [10.279s]
Building query seed array...  [2.142s]
Computing hash join...  [6.271s]
Masking low complexity seeds...  [0.249s]
Searching alignments...  [80.353s]
Deallocating memory...  [0s]
Processing query block 1, reference block 2/14, shape 1/2, index chunk 2/4.
Building reference seed array...  [13.6s]
Building query seed array...  [3.007s]
Computing hash join...  [6.197s]
Masking low complexity seeds...  [0.229s]
Searching alignments...  [54.277s]
Deallocating memory...  [0s]
Processing query block 1, reference block 2/14, shape 1/2, index chunk 3/4.
Building reference seed array...  [14.395s]
Building query seed array...  [3.011s]
Computing hash join...  [6.302s]
Masking low complexity seeds...  [0.247s]
Searching alignments...  [46.947s]
Deallocating memory...  [0s]
Processing query block 1, reference block 2/14, shape 1/2, index chunk 4/4.
Building reference seed array...  [10.798s]
Building query seed array...  [2.357s]
Computing hash join...  [6.025s]
Masking low complexity seeds...  [0.23s]
Searching alignments...  [42.369s]
Deallocating memory...  [0s]
Processing query block 1, reference block 2/14, shape 2/2, index chunk 1/4.
Building reference seed array...  [10.61s]
Building query seed array...  [2.136s]
Computing hash join...  [5.889s]
Masking low complexity seeds...  [0.24s]
Searching alignments...  [42.464s]
Deallocating memory...  [0s]
Processing query block 1, reference block 2/14, shape 2/2, index chunk 2/4.
Building reference seed array...  [12.922s]
Building query seed array...  [2.482s]
Computing hash join...  [5.948s]
Masking low complexity seeds...  [0.243s]
Searching alignments...  [33.854s]
Deallocating memory...  [0s]
Processing query block 1, reference block 2/14, shape 2/2, index chunk 3/4.
Building reference seed array...  [13.241s]
Building query seed array...  [2.469s]
Computing hash join...  [5.645s]
Masking low complexity seeds...  [0.252s]
Searching alignments...  [37.433s]
Deallocating memory...  [0s]
Processing query block 1, reference block 2/14, shape 2/2, index chunk 4/4.
Building reference seed array...  [10.678s]
Building query seed array...  [2.213s]
Computing hash join...  [5.663s]
Masking low complexity seeds...  [0.236s]
Searching alignments...  [32.884s]
Deallocating memory...  [0s]
Deallocating buffers...  [1.93s]
Clearing query masking...  [1.648s]
Opening temporary output file...  [0s]
Computing alignments... Loading trace points...  [7.018s]
Sorting trace points...  [1.432s]
Computing alignments...  [34.701s]
Deallocating buffers...  [0.016s]
Loading trace points...  [0.064s]
Sorting trace points...  [1.327s]
Computing alignments...  [34.35s]
Deallocating buffers...  [0.018s]
Loading trace points...  [0.093s]
Sorting trace points...  [1.093s]
Computing alignments...  [34.526s]
Deallocating buffers...  [0.016s]
Loading trace points...  [0.001s]
Sorting trace points...  [0.962s]
Computing alignments...  [34.943s]
Deallocating buffers...  [0.017s]
Loading trace points...  [0.056s]
Sorting trace points...  [1.375s]
Computing alignments...  [35.53s]
Deallocating buffers...  [0.024s]
Loading trace points...  [0.098s]
Sorting trace points...  [1.443s]
Computing alignments...  [35.824s]
Deallocating buffers...  [0.025s]
Loading trace points...  [0.12s]
Sorting trace points...  [1.318s]
Computing alignments...  [35.161s]
Deallocating buffers...  [0.015s]
Loading trace points...  [0.089s]
Sorting trace points...  [0.953s]
Computing alignments...  [34.851s]
Deallocating buffers...  [0.017s]
Loading trace points...  [0.001s]
Sorting trace points...  [1.332s]
Computing alignments...  [35.187s]
Deallocating buffers...  [0.015s]
Loading trace points...  [0.049s]
Sorting trace points...  [1.408s]
Computing alignments...  [35.867s]
Deallocating buffers...  [0.019s]
Loading trace points...  [0.146s]
Sorting trace points...  [1.567s]
Computing alignments...  [35.963s]
Deallocating buffers...  [0.113s]
Loading trace points...  [0.181s]
Sorting trace points...  [1.377s]
Computing alignments...  [35.926s]
Deallocating buffers...  [0.015s]
Loading trace points...  [0.045s]
Sorting trace points...  [1.331s]
Computing alignments...  [35.989s]
Deallocating buffers...  [0.016s]
Loading trace points...  [0.073s]
Sorting trace points...  [1.422s]
Computing alignments...  [36.14s]
Deallocating buffers...  [0.016s]
Loading trace points...  [0.001s]
Sorting trace points...  [1.429s]
Computing alignments...  [36.218s]
Deallocating buffers...  [0.015s]
Loading trace points...  [0s]
Sorting trace points...  [1.38s]
Computing alignments...  [35.505s]
Deallocating buffers...  [0.019s]
Loading trace points...  [0s]
 [596.339s]
Deallocating reference...  [0.072s]
Loading reference sequences...  [30.451s]
Masking reference...  [30.93s]
Initializing dictionary...  [0.077s]
Initializing temporary storage...  [0.007s]
Building reference histograms...  [33.181s]
Allocating buffers...  [0s]
Processing query block 1, reference block 3/14, shape 1/2, index chunk 1/4.
Building reference seed array...  [10.475s]
Building query seed array...  [2.18s]
Computing hash join...  [6.369s]
Masking low complexity seeds...  [0.241s]
Searching alignments...  [83.379s]
Deallocating memory...  [0s]
Processing query block 1, reference block 3/14, shape 1/2, index chunk 2/4.
Building reference seed array...  [13.715s]
Building query seed array...  [3.092s]
Computing hash join...  [6.289s]
Masking low complexity seeds...  [0.277s]
Searching alignments...  [53.198s]
Deallocating memory...  [0s]
Processing query block 1, reference block 3/14, shape 1/2, index chunk 3/4.
Building reference seed array...  [14.054s]
Building query seed array...  [2.991s]
Computing hash join...  [6.297s]
Masking low complexity seeds...  [0.244s]
Searching alignments...  [46.602s]
Deallocating memory...  [0s]
Processing query block 1, reference block 3/14, shape 1/2, index chunk 4/4.
Building reference seed array...  [10.932s]
Building query seed array...  [2.365s]
Computing hash join...  [6.098s]
Masking low complexity seeds...  [0.245s]
Searching alignments...  [43.323s]
Deallocating memory...  [0s]
Processing query block 1, reference block 3/14, shape 2/2, index chunk 1/4.
Building reference seed array...  [10.853s]
Building query seed array...  [2.236s]
Computing hash join...  [5.627s]
Masking low complexity seeds...  [0.235s]
Searching alignments...  [41.932s]
Deallocating memory...  [0s]
Processing query block 1, reference block 3/14, shape 2/2, index chunk 2/4.
Building reference seed array...  [13.05s]
Building query seed array...  [2.363s]
Computing hash join...  [5.843s]
Masking low complexity seeds...  [0.256s]
Searching alignments...  [35.623s]
Deallocating memory...  [0s]
Processing query block 1, reference block 3/14, shape 2/2, index chunk 3/4.
Building reference seed array...  [13.918s]
Building query seed array...  [2.698s]
Computing hash join...  [5.67s]
Masking low complexity seeds...  [0.254s]
Searching alignments...  [37.756s]
Deallocating memory...  [0s]
Processing query block 1, reference block 3/14, shape 2/2, index chunk 4/4.
Building reference seed array...  [11.208s]
Building query seed array...  [2.112s]
Computing hash join...  [5.598s]
Masking low complexity seeds...  [0.276s]
Searching alignments...  [32.463s]
Deallocating memory...  [0s]
Deallocating buffers...  [2.127s]
Clearing query masking...  [1.663s]
Opening temporary output file...  [0s]
Computing alignments... Loading trace points...  [7.039s]
Sorting trace points...  [1.414s]
Computing alignments...  [34.985s]
Deallocating buffers...  [0.016s]
Loading trace points...  [0.046s]
Sorting trace points...  [1.201s]
Computing alignments...  [34.36s]
Deallocating buffers...  [0.135s]
Loading trace points...  [0.062s]
Sorting trace points...  [1.388s]
Computing alignments...  [34.691s]
Deallocating buffers...  [0.016s]
Loading trace points...  [0.059s]
Sorting trace points...  [0.959s]
Computing alignments...  [35.196s]
Deallocating buffers...  [0.017s]
Loading trace points...  [0.077s]
Sorting trace points...  [1.386s]
Computing alignments...  [35.669s]
Deallocating buffers...  [0.015s]
Loading trace points...  [0.173s]
Sorting trace points...  [1.443s]
Computing alignments...  [35.941s]
Deallocating buffers...  [0.016s]
Loading trace points...  [0.074s]
Sorting trace points...  [0.977s]
Computing alignments...  [35.191s]
Deallocating buffers...  [0.016s]
Loading trace points...  [0.084s]
Sorting trace points...  [1.361s]
Computing alignments...  [35.113s]
Deallocating buffers...  [0.019s]
Loading trace points...  [0.05s]
Sorting trace points...  [1.313s]
Computing alignments...  [35.263s]
Deallocating buffers...  [0.018s]
Loading trace points...  [0.053s]
Sorting trace points...  [1.448s]
Computing alignments...  [35.978s]
Deallocating buffers...  [0.015s]
Loading trace points...  [0.051s]
Sorting trace points...  [1.277s]
Computing alignments...  [36.084s]
Deallocating buffers...  [0.019s]
Loading trace points...  [0.065s]
Sorting trace points...  [1.087s]
Computing alignments...  [36.158s]
Deallocating buffers...  [0.017s]
Loading trace points...  [0.058s]
Sorting trace points...  [1.398s]
Computing alignments...  [36.067s]
Deallocating buffers...  [0.019s]
Loading trace points...  [0.06s]
Sorting trace points...  [1.147s]
Computing alignments...  [36.111s]
Deallocating buffers...  [0.018s]
Loading trace points...  [0.057s]
Sorting trace points...  [1.428s]
Computing alignments...  [36.309s]
Deallocating buffers...  [0.019s]
Loading trace points...  [0s]
Sorting trace points...  [1.011s]
Computing alignments...  [35.645s]
Deallocating buffers...  [0.017s]
Loading trace points...  [0s]
 [597.519s]
Deallocating reference...  [0.066s]
Loading reference sequences...  [29.507s]
Masking reference...  [30.998s]
Initializing dictionary...  [0.078s]
Initializing temporary storage...  [0.007s]
Building reference histograms...  [32.894s]
Allocating buffers...  [0s]
Processing query block 1, reference block 4/14, shape 1/2, index chunk 1/4.
Building reference seed array...  [10.274s]
Building query seed array...  [2.172s]
Computing hash join...  [6.902s]
Masking low complexity seeds...  [0.457s]
Searching alignments...  [82.265s]
Deallocating memory...  [0s]
Processing query block 1, reference block 4/14, shape 1/2, index chunk 2/4.
Building reference seed array...  [13.759s]
Building query seed array...  [3s]
Computing hash join...  [5.786s]
Masking low complexity seeds...  [0.246s]
Searching alignments...  [54.517s]
Deallocating memory...  [0s]
Processing query block 1, reference block 4/14, shape 1/2, index chunk 3/4.
Building reference seed array...  [13.945s]
Building query seed array...  [2.991s]
Computing hash join...  [5.594s]
Masking low complexity seeds...  [0.261s]
Searching alignments...  [47.901s]
Deallocating memory...  [0s]
Processing query block 1, reference block 4/14, shape 1/2, index chunk 4/4.
Building reference seed array...  [10.869s]
Building query seed array...  [2.369s]
Computing hash join...  [6.646s]
Masking low complexity seeds...  [0.248s]
Searching alignments...  [41.312s]
Deallocating memory...  [0s]
Processing query block 1, reference block 4/14, shape 2/2, index chunk 1/4.
Building reference seed array...  [10.735s]
Building query seed array...  [2.174s]
Computing hash join...  [5.724s]
Masking low complexity seeds...  [0.224s]
Searching alignments...  [41.433s]
Deallocating memory...  [0s]
Processing query block 1, reference block 4/14, shape 2/2, index chunk 2/4.
Building reference seed array...  [13.122s]
Building query seed array...  [2.487s]
Computing hash join...  [5.727s]
Masking low complexity seeds...  [0.238s]
Searching alignments...  [33.557s]
Deallocating memory...  [0s]
Processing query block 1, reference block 4/14, shape 2/2, index chunk 3/4.
Building reference seed array...  [13.966s]
Building query seed array...  [2.632s]
Computing hash join...  [5.657s]
Masking low complexity seeds...  [0.213s]
Searching alignments...  [37.719s]
Deallocating memory...  [0s]
Processing query block 1, reference block 4/14, shape 2/2, index chunk 4/4.
Building reference seed array...  [10.564s]
Building query seed array...  [2.048s]
Computing hash join...  [5.756s]
Masking low complexity seeds...  [0.223s]
Searching alignments...  [31.867s]
Deallocating memory...  [0s]
Deallocating buffers...  [2.646s]
Clearing query masking...  [1.629s]
Opening temporary output file...  [0s]
Computing alignments... Loading trace points...  [6.917s]
Sorting trace points...  [1.465s]
Computing alignments...  [34.868s]
Deallocating buffers...  [0.015s]
Loading trace points...  [0.072s]
Sorting trace points...  [1.386s]
Computing alignments...  [34.396s]
Deallocating buffers...  [0.058s]
Loading trace points...  [0.086s]
Sorting trace points...  [1.033s]
Computing alignments...  [34.635s]
Deallocating buffers...  [0.017s]
Loading trace points...  [0.046s]
Sorting trace points...  [1.448s]
Computing alignments...  [35.315s]
Deallocating buffers...  [0.168s]
Loading trace points...  [0.174s]
Sorting trace points...  [1.492s]
Computing alignments...  [35.71s]
Deallocating buffers...  [0.051s]
Loading trace points...  [0.071s]
Sorting trace points...  [1.355s]
Computing alignments...  [36.015s]
Deallocating buffers...  [0.018s]
Loading trace points...  [0.055s]
Sorting trace points...  [1.338s]
Computing alignments...  [35.183s]
Deallocating buffers...  [0.023s]
Loading trace points...  [0.072s]
Sorting trace points...  [1.412s]
Computing alignments...  [35.038s]
Deallocating buffers...  [0.018s]
Loading trace points...  [0.093s]
Sorting trace points...  [1.009s]
Computing alignments...  [35.338s]
Deallocating buffers...  [0.016s]
Loading trace points...  [0.054s]
Sorting trace points...  [1.146s]
Computing alignments...  [36.07s]
Deallocating buffers...  [0.016s]
Loading trace points...  [0.075s]
Sorting trace points...  [1.407s]
Computing alignments...  [36.128s]
Deallocating buffers...  [0.016s]
Loading trace points...  [0.06s]
Sorting trace points...  [1.424s]
Computing alignments...  [36.096s]
Deallocating buffers...  [0.019s]
Loading trace points...  [0.206s]
Sorting trace points...  [1.487s]
Computing alignments...  [36.026s]
Deallocating buffers...  [0.052s]
Loading trace points...  [0.06s]
Sorting trace points...  [1.469s]
Computing alignments...  [36.111s]
Deallocating buffers...  [0.015s]
Loading trace points...  [0.045s]
Sorting trace points...  [1.391s]
Computing alignments...  [36.325s]
Deallocating buffers...  [0.019s]
Loading trace points...  [0s]
Sorting trace points...  [1.057s]
Computing alignments...  [35.737s]
Deallocating buffers...  [0.017s]
Loading trace points...  [0s]
 [599.03s]
Deallocating reference...  [0.067s]
Loading reference sequences...  [29.432s]
Masking reference...  [32.164s]
Initializing dictionary...  [0.078s]
Initializing temporary storage...  [0.008s]
Building reference histograms...  [32.038s]
Allocating buffers...  [0s]
Processing query block 1, reference block 5/14, shape 1/2, index chunk 1/4.
Building reference seed array...  [10.187s]
Building query seed array...  [2.172s]
Computing hash join...  [6.815s]
Masking low complexity seeds...  [0.446s]
Searching alignments...  [81.763s]
Deallocating memory...  [0s]
Processing query block 1, reference block 5/14, shape 1/2, index chunk 2/4.
Building reference seed array...  [13.219s]
Building query seed array...  [3.051s]
Computing hash join...  [6.44s]
Masking low complexity seeds...  [0.294s]
Searching alignments...  [53.422s]
Deallocating memory...  [0s]
Processing query block 1, reference block 5/14, shape 1/2, index chunk 3/4.
Building reference seed array...  [14.894s]
Building query seed array...  [2.948s]
Computing hash join...  [6.385s]
Masking low complexity seeds...  [0.245s]
Searching alignments...  [46.462s]
Deallocating memory...  [0s]
Processing query block 1, reference block 5/14, shape 1/2, index chunk 4/4.
Building reference seed array...  [10.655s]
Building query seed array...  [2.533s]
Computing hash join...  [6.057s]
Masking low complexity seeds...  [0.241s]
Searching alignments...  [42.907s]
Deallocating memory...  [0s]
Processing query block 1, reference block 5/14, shape 2/2, index chunk 1/4.
Building reference seed array...  [11.216s]
Building query seed array...  [2.223s]
Computing hash join...  [5.93s]
Masking low complexity seeds...  [0.251s]
Searching alignments...  [41.911s]
Deallocating memory...  [0s]
Processing query block 1, reference block 5/14, shape 2/2, index chunk 2/4.
Building reference seed array...  [13.384s]
Building query seed array...  [2.433s]
Computing hash join...  [5.846s]
Masking low complexity seeds...  [0.252s]
Searching alignments...  [35.229s]
Deallocating memory...  [0s]
Processing query block 1, reference block 5/14, shape 2/2, index chunk 3/4.
Building reference seed array...  [13.74s]
Building query seed array...  [2.486s]
Computing hash join...  [5.74s]
Masking low complexity seeds...  [0.254s]
Searching alignments...  [37.183s]
Deallocating memory...  [0s]
Processing query block 1, reference block 5/14, shape 2/2, index chunk 4/4.
Building reference seed array...  [10.221s]
Building query seed array...  [2.148s]
Computing hash join...  [5.931s]
Masking low complexity seeds...  [0.254s]
Searching alignments...  [32.652s]
Deallocating memory...  [0s]
Deallocating buffers...  [2.304s]
Clearing query masking...  [1.66s]
Opening temporary output file...  [0s]
Computing alignments... Loading trace points...  [7.065s]
Sorting trace points...  [1.403s]
Computing alignments...  [34.78s]
Deallocating buffers...  [0.017s]
Loading trace points...  [0.049s]
Sorting trace points...  [1.193s]
Computing alignments...  [34.466s]
Deallocating buffers...  [0.018s]
Loading trace points...  [0.074s]
Sorting trace points...  [1.333s]
Computing alignments...  [34.53s]
Deallocating buffers...  [0.015s]
Loading trace points...  [0.033s]
Sorting trace points...  [1.357s]
Computing alignments...  [35.085s]
Deallocating buffers...  [0.019s]
Loading trace points...  [0.072s]
Sorting trace points...  [1.062s]
Computing alignments...  [35.563s]
Deallocating buffers...  [0.097s]
Loading trace points...  [0.087s]
Sorting trace points...  [1.205s]
Computing alignments...  [35.979s]
Deallocating buffers...  [0.018s]
Loading trace points...  [0.06s]
Sorting trace points...  [1.237s]
Computing alignments...  [35.216s]
Deallocating buffers...  [0.018s]
Loading trace points...  [0.082s]
Sorting trace points...  [1.526s]
Computing alignments...  [35.084s]
Deallocating buffers...  [0.132s]
Loading trace points...  [0.047s]
Sorting trace points...  [1.394s]
Computing alignments...  [35.416s]
Deallocating buffers...  [0.099s]
Loading trace points...  [0.078s]
Sorting trace points...  [1.491s]
Computing alignments...  [36.003s]
Deallocating buffers...  [0.139s]
Loading trace points...  [0.04s]
Sorting trace points...  [1.461s]
Computing alignments...  [36.06s]
Deallocating buffers...  [0.025s]
Loading trace points...  [0.801s]
Sorting trace points...  [1.693s]
Computing alignments...  [35.992s]
Deallocating buffers...  [0.164s]
Loading trace points...  [0.043s]
Sorting trace points...  [1.212s]
Computing alignments...  [36.11s]
Deallocating buffers...  [0.018s]
Loading trace points...  [0.064s]
Sorting trace points...  [1.276s]
Computing alignments...  [36.153s]
Deallocating buffers...  [0.016s]
Loading trace points...  [0.048s]
Sorting trace points...  [1.399s]
Computing alignments...  [36.305s]
Deallocating buffers...  [0.078s]
Loading trace points...  [0s]
Sorting trace points...  [1.4s]
Computing alignments...  [35.575s]
Deallocating buffers...  [0.015s]
Loading trace points...  [0s]
 [599.584s]
Deallocating reference...  [0.068s]
Loading reference sequences...  [29.708s]
Masking reference...  [30.966s]
Initializing dictionary...  [0.077s]
Initializing temporary storage...  [0.007s]
Building reference histograms...  [32.345s]
Allocating buffers...  [0s]
Processing query block 1, reference block 6/14, shape 1/2, index chunk 1/4.
Building reference seed array...  [10.236s]
Building query seed array...  [2.155s]
Computing hash join...  [7.056s]
Masking low complexity seeds...  [0.243s]
Searching alignments...  [79.535s]
Deallocating memory...  [0s]
Processing query block 1, reference block 6/14, shape 1/2, index chunk 2/4.
Building reference seed array...  [13.457s]
Building query seed array...  [3.266s]
Computing hash join...  [7.123s]
Masking low complexity seeds...  [0.238s]
Searching alignments...  [53.703s]
Deallocating memory...  [0s]
Processing query block 1, reference block 6/14, shape 1/2, index chunk 3/4.
Building reference seed array...  [13.994s]
Building query seed array...  [2.88s]
Computing hash join...  [6.654s]
Masking low complexity seeds...  [0.28s]
Searching alignments...  [45.534s]
Deallocating memory...  [0s]
Processing query block 1, reference block 6/14, shape 1/2, index chunk 4/4.
Building reference seed array...  [10.433s]
Building query seed array...  [2.299s]
Computing hash join...  [7.261s]
Masking low complexity seeds...  [0.235s]
Searching alignments...  [40.879s]
Deallocating memory...  [0s]
Processing query block 1, reference block 6/14, shape 2/2, index chunk 1/4.
Building reference seed array...  [10.249s]
Building query seed array...  [2.089s]
Computing hash join...  [6.951s]
Masking low complexity seeds...  [0.265s]
Searching alignments...  [41.178s]
Deallocating memory...  [0s]
Processing query block 1, reference block 6/14, shape 2/2, index chunk 2/4.
Building reference seed array...  [13.27s]
Building query seed array...  [2.6s]
Computing hash join...  [6.584s]
Masking low complexity seeds...  [0.239s]
Searching alignments...  [33.323s]
Deallocating memory...  [0s]
Processing query block 1, reference block 6/14, shape 2/2, index chunk 3/4.
Building reference seed array...  [13.171s]
Building query seed array...  [2.562s]
Computing hash join...  [6.578s]
Masking low complexity seeds...  [0.224s]
Searching alignments...  [35.919s]
Deallocating memory...  [0s]
Processing query block 1, reference block 6/14, shape 2/2, index chunk 4/4.
Building reference seed array...  [10.695s]
Building query seed array...  [2.324s]
Computing hash join...  [6.849s]
Masking low complexity seeds...  [0.218s]
Searching alignments...  [31.469s]
Deallocating memory...  [0s]
Deallocating buffers...  [2.09s]
Clearing query masking...  [1.655s]
Opening temporary output file...  [0s]
Computing alignments... Loading trace points...  [6.997s]
Sorting trace points...  [1.399s]
Computing alignments...  [34.449s]
Deallocating buffers...  [0.039s]
Loading trace points...  [0.057s]
Sorting trace points...  [1.323s]
Computing alignments...  [34.171s]
Deallocating buffers...  [0.28s]
Loading trace points...  [0.903s]
Sorting trace points...  [1.418s]
Computing alignments...  [34.184s]
Deallocating buffers...  [0.015s]
Loading trace points...  [0.079s]
Sorting trace points...  [1.365s]
Computing alignments...  [34.715s]
Deallocating buffers...  [0.015s]
Loading trace points...  [0.076s]
Sorting trace points...  [1.355s]
Computing alignments...  [35.121s]
Deallocating buffers...  [0.02s]
Loading trace points...  [0.099s]
Sorting trace points...  [1.355s]
Computing alignments...  [35.427s]
Deallocating buffers...  [0.015s]
Loading trace points...  [0.092s]
Sorting trace points...  [1.007s]
Computing alignments...  [34.888s]
Deallocating buffers...  [0.017s]
Loading trace points...  [0.295s]
Sorting trace points...  [1.379s]
Computing alignments...  [34.743s]
Deallocating buffers...  [0.018s]
Loading trace points...  [0.108s]
Sorting trace points...  [1.349s]
Computing alignments...  [34.955s]
Deallocating buffers...  [0.022s]
Loading trace points...  [0.039s]
Sorting trace points...  [1.202s]
Computing alignments...  [35.729s]
Deallocating buffers...  [0.018s]
Loading trace points...  [0.085s]
Sorting trace points...  [1.426s]
Computing alignments...  [35.723s]
Deallocating buffers...  [0.015s]
Loading trace points...  [0.045s]
Sorting trace points...  [1.038s]
Computing alignments...  [35.641s]
Deallocating buffers...  [0.017s]
Loading trace points...  [0.001s]
Sorting trace points...  [1.348s]
Computing alignments...  [35.846s]
Deallocating buffers...  [0.019s]
Loading trace points...  [0.068s]
Sorting trace points...  [1.119s]
Computing alignments...  [35.894s]
Deallocating buffers...  [0.018s]
Loading trace points...  [0.076s]
Sorting trace points...  [1.389s]
Computing alignments...  [35.957s]
Deallocating buffers...  [0.015s]
Loading trace points...  [0s]
Sorting trace points...  [0.977s]
Computing alignments...  [35.276s]
Deallocating buffers...  [0.017s]
Loading trace points...  [0s]
 [592.933s]
Deallocating reference...  [0.057s]
Loading reference sequences...  [29.378s]
Masking reference...  [31.56s]
Initializing dictionary...  [0.078s]
Initializing temporary storage...  [0.007s]
Building reference histograms...  [32.565s]
Allocating buffers...  [0s]
Processing query block 1, reference block 7/14, shape 1/2, index chunk 1/4.
Building reference seed array...  [10.688s]
Building query seed array...  [2.166s]
Computing hash join...  [6.919s]
Masking low complexity seeds...  [0.237s]
Searching alignments...  [82.421s]
Deallocating memory...  [0s]
Processing query block 1, reference block 7/14, shape 1/2, index chunk 2/4.
Building reference seed array...  [13.489s]
Building query seed array...  [3.168s]
Computing hash join...  [6.453s]
Masking low complexity seeds...  [0.26s]
Searching alignments...  [53.408s]
Deallocating memory...  [0s]
Processing query block 1, reference block 7/14, shape 1/2, index chunk 3/4.
Building reference seed array...  [14.368s]
Building query seed array...  [2.784s]
Computing hash join...  [6.497s]
Masking low complexity seeds...  [0.229s]
Searching alignments...  [47.395s]
Deallocating memory...  [0s]
Processing query block 1, reference block 7/14, shape 1/2, index chunk 4/4.
Building reference seed array...  [10.987s]
Building query seed array...  [2.46s]
Computing hash join...  [6.144s]
Masking low complexity seeds...  [0.266s]
Searching alignments...  [43.773s]
Deallocating memory...  [0s]
Processing query block 1, reference block 7/14, shape 2/2, index chunk 1/4.
Building reference seed array...  [10.614s]
Building query seed array...  [2.068s]
Computing hash join...  [5.818s]
Masking low complexity seeds...  [0.273s]
Searching alignments...  [42.227s]
Deallocating memory...  [0s]
Processing query block 1, reference block 7/14, shape 2/2, index chunk 2/4.
Building reference seed array...  [12.909s]
Building query seed array...  [2.409s]
Computing hash join...  [6.256s]
Masking low complexity seeds...  [0.225s]
Searching alignments...  [34.173s]
Deallocating memory...  [0s]
Processing query block 1, reference block 7/14, shape 2/2, index chunk 3/4.
Building reference seed array...  [14.441s]
Building query seed array...  [2.571s]
Computing hash join...  [6.45s]
Masking low complexity seeds...  [0.237s]
Searching alignments...  [39.368s]
Deallocating memory...  [0s]
Processing query block 1, reference block 7/14, shape 2/2, index chunk 4/4.
Building reference seed array...  [11.154s]
Building query seed array...  [2.097s]
Computing hash join...  [6.212s]
Masking low complexity seeds...  [0.244s]
Searching alignments...  [32.967s]
Deallocating memory...  [0s]
Deallocating buffers...  [2.539s]
Clearing query masking...  [1.6s]
Opening temporary output file...  [0s]
Computing alignments... Loading trace points...  [6.908s]
Sorting trace points...  [1.416s]
Computing alignments...  [34.949s]
Deallocating buffers...  [0.016s]
Loading trace points...  [0.624s]
Sorting trace points...  [1.162s]
Computing alignments...  [34.51s]
Deallocating buffers...  [0.017s]
Loading trace points...  [0.093s]
Sorting trace points...  [1.339s]
Computing alignments...  [34.583s]
Deallocating buffers...  [0.019s]
Loading trace points...  [0.074s]
Sorting trace points...  [1.352s]
Computing alignments...  [35.1s]
Deallocating buffers...  [0.015s]
Loading trace points...  [0.058s]
Sorting trace points...  [1.37s]
Computing alignments...  [35.585s]
Deallocating buffers...  [0.026s]
Loading trace points...  [0.087s]
Sorting trace points...  [1.735s]
Computing alignments...  [35.954s]
Deallocating buffers...  [0.365s]
Loading trace points...  [0.062s]
Sorting trace points...  [1.11s]
Computing alignments...  [35.448s]
Deallocating buffers...  [0.017s]
Loading trace points...  [0.084s]
Sorting trace points...  [1.075s]
Computing alignments...  [35.226s]
Deallocating buffers...  [0.017s]
Loading trace points...  [0.053s]
Sorting trace points...  [1.321s]
Computing alignments...  [35.383s]
Deallocating buffers...  [0.016s]
Loading trace points...  [0.045s]
Sorting trace points...  [1.37s]
Computing alignments...  [36.067s]
Deallocating buffers...  [0.032s]
Loading trace points...  [0.064s]
Sorting trace points...  [1.417s]
Computing alignments...  [36.121s]
Deallocating buffers...  [0.016s]
Loading trace points...  [0.058s]
Sorting trace points...  [1.478s]
Computing alignments...  [36.041s]
Deallocating buffers...  [0.164s]
Loading trace points...  [0.046s]
Sorting trace points...  [1.391s]
Computing alignments...  [36.174s]
Deallocating buffers...  [0.015s]
Loading trace points...  [0.081s]
Sorting trace points...  [1.394s]
Computing alignments...  [36.214s]
Deallocating buffers...  [0.016s]
Loading trace points...  [0.06s]
Sorting trace points...  [1.41s]
Computing alignments...  [36.233s]
Deallocating buffers...  [0.016s]
Loading trace points...  [0s]
Sorting trace points...  [1.328s]
Computing alignments...  [35.565s]
Deallocating buffers...  [0.019s]
Loading trace points...  [0s]
 [600.119s]
Deallocating reference...  [0.056s]
Loading reference sequences...  [33.687s]
Masking reference...  [31.23s]
Initializing dictionary...  [0.078s]
Initializing temporary storage...  [0.007s]
Building reference histograms...  [32.039s]
Allocating buffers...  [0s]
Processing query block 1, reference block 8/14, shape 1/2, index chunk 1/4.
Building reference seed array...  [10.648s]
Building query seed array...  [2.175s]
Computing hash join...  [7.504s]
Masking low complexity seeds...  [0.24s]
Searching alignments...  [82.135s]
Deallocating memory...  [0s]
Processing query block 1, reference block 8/14, shape 1/2, index chunk 2/4.
Building reference seed array...  [12.814s]
Building query seed array...  [3.19s]
Computing hash join...  [7.291s]
Masking low complexity seeds...  [0.23s]
Searching alignments...  [52.438s]
Deallocating memory...  [0s]
Processing query block 1, reference block 8/14, shape 1/2, index chunk 3/4.
Building reference seed array...  [13.981s]
Building query seed array...  [2.975s]
Computing hash join...  [7.24s]
Masking low complexity seeds...  [0.23s]
Searching alignments...  [46.316s]
Deallocating memory...  [0s]
Processing query block 1, reference block 8/14, shape 1/2, index chunk 4/4.
Building reference seed array...  [10.176s]
Building query seed array...  [2.414s]
Computing hash join...  [6.699s]
Masking low complexity seeds...  [0.255s]
Searching alignments...  [42.943s]
Deallocating memory...  [0s]
Processing query block 1, reference block 8/14, shape 2/2, index chunk 1/4.
Building reference seed array...  [10.878s]
Building query seed array...  [2.101s]
Computing hash join...  [6.348s]
Masking low complexity seeds...  [0.245s]
Searching alignments...  [41.945s]
Deallocating memory...  [0s]
Processing query block 1, reference block 8/14, shape 2/2, index chunk 2/4.
Building reference seed array...  [12.673s]
Building query seed array...  [2.561s]
Computing hash join...  [7s]
Masking low complexity seeds...  [0.231s]
Searching alignments...  [33.631s]
Deallocating memory...  [0s]
Processing query block 1, reference block 8/14, shape 2/2, index chunk 3/4.
Building reference seed array...  [14.253s]
Building query seed array...  [2.494s]
Computing hash join...  [6.93s]
Masking low complexity seeds...  [0.234s]
Searching alignments...  [36.716s]
Deallocating memory...  [0s]
Processing query block 1, reference block 8/14, shape 2/2, index chunk 4/4.
Building reference seed array...  [10.349s]
Building query seed array...  [2.234s]
Computing hash join...  [6.663s]
Masking low complexity seeds...  [0.262s]
Searching alignments...  [31.754s]
Deallocating memory...  [0s]
Deallocating buffers...  [2.158s]
Clearing query masking...  [1.683s]
Opening temporary output file...  [0s]
Computing alignments... Loading trace points...  [7.156s]
Sorting trace points...  [1.407s]
Computing alignments...  [34.63s]
Deallocating buffers...  [0.018s]
Loading trace points...  [0.066s]
Sorting trace points...  [1.284s]
Computing alignments...  [34.297s]
Deallocating buffers...  [0.195s]
Loading trace points...  [0.105s]
Sorting trace points...  [1.37s]
Computing alignments...  [34.486s]
Deallocating buffers...  [0.018s]
Loading trace points...  [0.074s]
Sorting trace points...  [1.278s]
Computing alignments...  [34.846s]
Deallocating buffers...  [0.016s]
Loading trace points...  [0.101s]
Sorting trace points...  [1.366s]
Computing alignments...  [35.432s]
Deallocating buffers...  [0.015s]
Loading trace points...  [0.098s]
Sorting trace points...  [1.291s]
Computing alignments...  [35.701s]
Deallocating buffers...  [0.104s]
Loading trace points...  [0s]
Sorting trace points...  [1.366s]
Computing alignments...  [35.274s]
Deallocating buffers...  [0.015s]
Loading trace points...  [0.101s]
Sorting trace points...  [1.379s]
Computing alignments...  [34.866s]
Deallocating buffers...  [0.015s]
Loading trace points...  [0.601s]
Sorting trace points...  [1.438s]
Computing alignments...  [35.322s]
Deallocating buffers...  [0.015s]
Loading trace points...  [0.051s]
Sorting trace points...  [1.628s]
Computing alignments...  [36.093s]
Deallocating buffers...  [0.294s]
Loading trace points...  [0.078s]
Sorting trace points...  [1.449s]
Computing alignments...  [36.012s]
Deallocating buffers...  [0.016s]
Loading trace points...  [0.071s]
Sorting trace points...  [1.6s]
Computing alignments...  [35.968s]
Deallocating buffers...  [0.184s]
Loading trace points...  [0.063s]
Sorting trace points...  [1.197s]
Computing alignments...  [36.12s]
Deallocating buffers...  [0.017s]
Loading trace points...  [0.207s]
Sorting trace points...  [1.452s]
Computing alignments...  [36.153s]
Deallocating buffers...  [0.015s]
Loading trace points...  [0.065s]
Sorting trace points...  [1.436s]
Computing alignments...  [36.257s]
Deallocating buffers...  [0.027s]
Loading trace points...  [0s]
Sorting trace points...  [1.432s]
Computing alignments...  [35.716s]
Deallocating buffers...  [0.041s]
Loading trace points...  [0s]
 [599.589s]
Deallocating reference...  [0.057s]
Loading reference sequences...  [29.331s]
Masking reference...  [30.907s]
Initializing dictionary...  [0.077s]
Initializing temporary storage...  [0.007s]
Building reference histograms...  [32.427s]
Allocating buffers...  [0s]
Processing query block 1, reference block 9/14, shape 1/2, index chunk 1/4.
Building reference seed array...  [10.299s]
Building query seed array...  [2.105s]
Computing hash join...  [7.453s]
Masking low complexity seeds...  [0.238s]
Searching alignments...  [82.567s]
Deallocating memory...  [0s]
Processing query block 1, reference block 9/14, shape 1/2, index chunk 2/4.
Building reference seed array...  [13.366s]
Building query seed array...  [3.157s]
Computing hash join...  [7.246s]
Masking low complexity seeds...  [0.265s]
Searching alignments...  [54.937s]
Deallocating memory...  [0s]
Processing query block 1, reference block 9/14, shape 1/2, index chunk 3/4.
Building reference seed array...  [13.617s]
Building query seed array...  [2.872s]
Computing hash join...  [7.317s]
Masking low complexity seeds...  [0.241s]
Searching alignments...  [46.018s]
Deallocating memory...  [0s]
Processing query block 1, reference block 9/14, shape 1/2, index chunk 4/4.
Building reference seed array...  [10.705s]
Building query seed array...  [2.294s]
Computing hash join...  [6.504s]
Masking low complexity seeds...  [0.262s]
Searching alignments...  [42.032s]
Deallocating memory...  [0s]
Processing query block 1, reference block 9/14, shape 2/2, index chunk 1/4.
Building reference seed array...  [11.021s]
Building query seed array...  [2.167s]
Computing hash join...  [6.526s]
Masking low complexity seeds...  [0.251s]
Searching alignments...  [41.715s]
Deallocating memory...  [0s]
Processing query block 1, reference block 9/14, shape 2/2, index chunk 2/4.
Building reference seed array...  [12.934s]
Building query seed array...  [2.454s]
Computing hash join...  [7.131s]
Masking low complexity seeds...  [0.237s]
Searching alignments...  [33.853s]
Deallocating memory...  [0s]
Processing query block 1, reference block 9/14, shape 2/2, index chunk 3/4.
Building reference seed array...  [14.277s]
Building query seed array...  [2.636s]
Computing hash join...  [7.16s]
Masking low complexity seeds...  [0.228s]
Searching alignments...  [37.232s]
Deallocating memory...  [0s]
Processing query block 1, reference block 9/14, shape 2/2, index chunk 4/4.
Building reference seed array...  [11.016s]
Building query seed array...  [2.138s]
Computing hash join...  [7.086s]
Masking low complexity seeds...  [0.291s]
Searching alignments...  [31.751s]
Deallocating memory...  [0s]
Deallocating buffers...  [2.326s]
Clearing query masking...  [1.663s]
Opening temporary output file...  [0s]
Computing alignments... Loading trace points...  [7.251s]
Sorting trace points...  [1.424s]
Computing alignments...  [34.714s]
Deallocating buffers...  [0.026s]
Loading trace points...  [0.057s]
Sorting trace points...  [1.368s]
Computing alignments...  [34.304s]
Deallocating buffers...  [0.337s]
Loading trace points...  [0.505s]
Sorting trace points...  [1.406s]
Computing alignments...  [34.298s]
Deallocating buffers...  [0.015s]
Loading trace points...  [0.077s]
Sorting trace points...  [0.972s]
Computing alignments...  [34.807s]
Deallocating buffers...  [0.016s]
Loading trace points...  [0.065s]
Sorting trace points...  [1.37s]
Computing alignments...  [35.235s]
Deallocating buffers...  [0.015s]
Loading trace points...  [0.063s]
Sorting trace points...  [1.509s]
Computing alignments...  [35.558s]
Deallocating buffers...  [0.231s]
Loading trace points...  [0.095s]
Sorting trace points...  [1.261s]
Computing alignments...  [34.915s]
Deallocating buffers...  [0.018s]
Loading trace points...  [0.074s]
Sorting trace points...  [1.337s]
Computing alignments...  [34.658s]
Deallocating buffers...  [0.015s]
Loading trace points...  [0.063s]
Sorting trace points...  [1.317s]
Computing alignments...  [35.097s]
Deallocating buffers...  [0.018s]
Loading trace points...  [0.048s]
Sorting trace points...  [1.271s]
Computing alignments...  [35.85s]
Deallocating buffers...  [0.016s]
Loading trace points...  [0.071s]
Sorting trace points...  [1.356s]
Computing alignments...  [35.957s]
Deallocating buffers...  [0.016s]
Loading trace points...  [0.06s]
Sorting trace points...  [1.541s]
Computing alignments...  [35.91s]
Deallocating buffers...  [0.107s]
Loading trace points...  [0.064s]
Sorting trace points...  [1.189s]
Computing alignments...  [36.047s]
Deallocating buffers...  [0.016s]
Loading trace points...  [0.057s]
Sorting trace points...  [1.425s]
Computing alignments...  [36.135s]
Deallocating buffers...  [0.018s]
Loading trace points...  [0.06s]
Sorting trace points...  [1.32s]
Computing alignments...  [36.107s]
Deallocating buffers...  [0.019s]
Loading trace points...  [0s]
Sorting trace points...  [1.359s]
Computing alignments...  [35.504s]
Deallocating buffers...  [0.019s]
Loading trace points...  [0s]
 [596.231s]
Deallocating reference...  [0.056s]
Loading reference sequences...  [29.759s]
Masking reference...  [32.122s]
Initializing dictionary...  [0.077s]
Initializing temporary storage...  [0.007s]
Building reference histograms...  [31.851s]
Allocating buffers...  [0s]
Processing query block 1, reference block 10/14, shape 1/2, index chunk 1/4.
Building reference seed array...  [10.18s]
Building query seed array...  [2.153s]
Computing hash join...  [7.287s]
Masking low complexity seeds...  [0.24s]
Searching alignments...  [82.202s]
Deallocating memory...  [0s]
Processing query block 1, reference block 10/14, shape 1/2, index chunk 2/4.
Building reference seed array...  [13.303s]
Building query seed array...  [3.216s]
Computing hash join...  [7.181s]
Masking low complexity seeds...  [0.239s]
Searching alignments...  [55.456s]
Deallocating memory...  [0s]
Processing query block 1, reference block 10/14, shape 1/2, index chunk 3/4.
Building reference seed array...  [13.909s]
Building query seed array...  [3.004s]
Computing hash join...  [7.27s]
Masking low complexity seeds...  [0.24s]
Searching alignments...  [47.965s]
Deallocating memory...  [0s]
Processing query block 1, reference block 10/14, shape 1/2, index chunk 4/4.
Building reference seed array...  [10.767s]
Building query seed array...  [2.325s]
Computing hash join...  [6.641s]
Masking low complexity seeds...  [0.28s]
Searching alignments...  [43.463s]
Deallocating memory...  [0s]
Processing query block 1, reference block 10/14, shape 2/2, index chunk 1/4.
Building reference seed array...  [10.899s]
Building query seed array...  [2.162s]
Computing hash join...  [7.027s]
Masking low complexity seeds...  [0.231s]
Searching alignments...  [43.122s]
Deallocating memory...  [0s]
Processing query block 1, reference block 10/14, shape 2/2, index chunk 2/4.
Building reference seed array...  [12.823s]
Building query seed array...  [2.607s]
Computing hash join...  [7.067s]
Masking low complexity seeds...  [0.289s]
Searching alignments...  [33.861s]
Deallocating memory...  [0s]
Processing query block 1, reference block 10/14, shape 2/2, index chunk 3/4.
Building reference seed array...  [13.581s]
Building query seed array...  [2.548s]
Computing hash join...  [6.89s]
Masking low complexity seeds...  [0.291s]
Searching alignments...  [38.624s]
Deallocating memory...  [0s]
Processing query block 1, reference block 10/14, shape 2/2, index chunk 4/4.
Building reference seed array...  [10.497s]
Building query seed array...  [2.142s]
Computing hash join...  [6.853s]
Masking low complexity seeds...  [0.285s]
Searching alignments...  [32.612s]
Deallocating memory...  [0s]
Deallocating buffers...  [2.516s]
Clearing query masking...  [1.66s]
Opening temporary output file...  [0s]
Computing alignments... Loading trace points...  [7.091s]
Sorting trace points...  [1.45s]
Computing alignments...  [34.552s]
Deallocating buffers...  [0.017s]
Loading trace points...  [0.126s]
Sorting trace points...  [1.42s]
Computing alignments...  [36.004s]
Deallocating buffers...  [0.268s]
Loading trace points...  [0.115s]
Sorting trace points...  [1.052s]
Computing alignments...  [34.178s]
Deallocating buffers...  [0.017s]
Loading trace points...  [0.043s]
Sorting trace points...  [1.353s]
Computing alignments...  [34.845s]
Deallocating buffers...  [0.015s]
Loading trace points...  [0.523s]
Sorting trace points...  [1.432s]
Computing alignments...  [35.312s]
Deallocating buffers...  [0.018s]
Loading trace points...  [0.084s]
Sorting trace points...  [1.565s]
Computing alignments...  [35.982s]
Deallocating buffers...  [0.261s]
Loading trace points...  [0.131s]
Sorting trace points...  [1.401s]
Computing alignments...  [34.939s]
Deallocating buffers...  [0.015s]
Loading trace points...  [0.094s]
Sorting trace points...  [1.183s]
Computing alignments...  [34.805s]
Deallocating buffers...  [0.018s]
Loading trace points...  [0.055s]
Sorting trace points...  [1.009s]
Computing alignments...  [35.108s]
Deallocating buffers...  [0.017s]
Loading trace points...  [0.057s]
Sorting trace points...  [1.35s]
Computing alignments...  [35.691s]
Deallocating buffers...  [0.019s]
Loading trace points...  [0.044s]
Sorting trace points...  [1.38s]
Computing alignments...  [35.678s]
Deallocating buffers...  [0.016s]
Loading trace points...  [0.052s]
Sorting trace points...  [1.401s]
Computing alignments...  [35.713s]
Deallocating buffers...  [0.019s]
Loading trace points...  [0.048s]
Sorting trace points...  [1.23s]
Computing alignments...  [35.896s]
Deallocating buffers...  [0.018s]
Loading trace points...  [0.077s]
Sorting trace points...  [1.424s]
Computing alignments...  [35.93s]
Deallocating buffers...  [0.015s]
Loading trace points...  [0.044s]
Sorting trace points...  [1.511s]
Computing alignments...  [36.04s]
Deallocating buffers...  [0.111s]
Loading trace points...  [0s]
Sorting trace points...  [0.979s]
Computing alignments...  [35.389s]
Deallocating buffers...  [0.017s]
Loading trace points...  [0s]
 [596.864s]
Deallocating reference...  [0.06s]
Loading reference sequences...  [29.43s]
Masking reference...  [32.071s]
Initializing dictionary...  [0.076s]
Initializing temporary storage...  [0.007s]
Building reference histograms...  [32.092s]
Allocating buffers...  [0s]
Processing query block 1, reference block 11/14, shape 1/2, index chunk 1/4.
Building reference seed array...  [10.247s]
Building query seed array...  [2.158s]
Computing hash join...  [7.519s]
Masking low complexity seeds...  [0.237s]
Searching alignments...  [80.801s]
Deallocating memory...  [0s]
Processing query block 1, reference block 11/14, shape 1/2, index chunk 2/4.
Building reference seed array...  [13.14s]
Building query seed array...  [3.164s]
Computing hash join...  [7.148s]
Masking low complexity seeds...  [0.243s]
Searching alignments...  [52.244s]
Deallocating memory...  [0s]
Processing query block 1, reference block 11/14, shape 1/2, index chunk 3/4.
Building reference seed array...  [13.69s]
Building query seed array...  [2.902s]
Computing hash join...  [7.253s]
Masking low complexity seeds...  [0.233s]
Searching alignments...  [45.759s]
Deallocating memory...  [0s]
Processing query block 1, reference block 11/14, shape 1/2, index chunk 4/4.
Building reference seed array...  [10.732s]
Building query seed array...  [2.323s]
Computing hash join...  [6.574s]
Masking low complexity seeds...  [0.241s]
Searching alignments...  [41.469s]
Deallocating memory...  [0s]
Processing query block 1, reference block 11/14, shape 2/2, index chunk 1/4.
Building reference seed array...  [10.972s]
Building query seed array...  [2.298s]
Computing hash join...  [6.407s]
Masking low complexity seeds...  [0.256s]
Searching alignments...  [42.582s]
Deallocating memory...  [0s]
Processing query block 1, reference block 11/14, shape 2/2, index chunk 2/4.
Building reference seed array...  [12.9s]
Building query seed array...  [2.524s]
Computing hash join...  [7.225s]
Masking low complexity seeds...  [0.248s]
Searching alignments...  [33.47s]
Deallocating memory...  [0s]
Processing query block 1, reference block 11/14, shape 2/2, index chunk 3/4.
Building reference seed array...  [13.581s]
Building query seed array...  [2.859s]
Computing hash join...  [7.198s]
Masking low complexity seeds...  [0.223s]
Searching alignments...  [38.198s]
Deallocating memory...  [0s]
Processing query block 1, reference block 11/14, shape 2/2, index chunk 4/4.
Building reference seed array...  [10.692s]
Building query seed array...  [2.076s]
Computing hash join...  [6.905s]
Masking low complexity seeds...  [0.227s]
Searching alignments...  [31.714s]
Deallocating memory...  [0s]
Deallocating buffers...  [2.236s]
Clearing query masking...  [1.669s]
Opening temporary output file...  [0s]
Computing alignments... Loading trace points...  [7.094s]
Sorting trace points...  [1.426s]
Computing alignments...  [34.508s]
Deallocating buffers...  [0.016s]
Loading trace points...  [0.064s]
Sorting trace points...  [1.491s]
Computing alignments...  [34.421s]
Deallocating buffers...  [0.292s]
Loading trace points...  [0.077s]
Sorting trace points...  [1.412s]
Computing alignments...  [34.258s]
Deallocating buffers...  [0.015s]
Loading trace points...  [0.118s]
Sorting trace points...  [1.092s]
Computing alignments...  [35.039s]
Deallocating buffers...  [0.016s]
Loading trace points...  [0.083s]
Sorting trace points...  [1.351s]
Computing alignments...  [35.419s]
Deallocating buffers...  [0.018s]
Loading trace points...  [0.095s]
Sorting trace points...  [1.401s]
Computing alignments...  [35.841s]
Deallocating buffers...  [0.016s]
Loading trace points...  [0.086s]
Sorting trace points...  [1.372s]
Computing alignments...  [35.093s]
Deallocating buffers...  [0.015s]
Loading trace points...  [0.064s]
Sorting trace points...  [1.353s]
Computing alignments...  [34.797s]
Deallocating buffers...  [0.055s]
Loading trace points...  [0.092s]
Sorting trace points...  [1.087s]
Computing alignments...  [34.967s]
Deallocating buffers...  [0.018s]
Loading trace points...  [0.059s]
Sorting trace points...  [1.393s]
Computing alignments...  [35.628s]
Deallocating buffers...  [0.019s]
Loading trace points...  [0.073s]
Sorting trace points...  [1.119s]
Computing alignments...  [35.802s]
Deallocating buffers...  [0.016s]
Loading trace points...  [0.05s]
Sorting trace points...  [1.484s]
Computing alignments...  [35.596s]
Deallocating buffers...  [0.015s]
Loading trace points...  [0.061s]
Sorting trace points...  [1.365s]
Computing alignments...  [35.73s]
Deallocating buffers...  [0.015s]
Loading trace points...  [0.069s]
Sorting trace points...  [1.259s]
Computing alignments...  [35.936s]
Deallocating buffers...  [0.016s]
Loading trace points...  [0s]
Sorting trace points...  [1.477s]
Computing alignments...  [35.965s]
Deallocating buffers...  [0.019s]
Loading trace points...  [0s]
Sorting trace points...  [1.003s]
Computing alignments...  [35.375s]
Deallocating buffers...  [0.017s]
Loading trace points...  [0s]
 [594.317s]
Deallocating reference...  [0.061s]
Loading reference sequences...  [29.708s]
Masking reference...  [30.903s]
Initializing dictionary...  [0.077s]
Initializing temporary storage...  [0.007s]
Building reference histograms...  [32.398s]
Allocating buffers...  [0s]
Processing query block 1, reference block 12/14, shape 1/2, index chunk 1/4.
Building reference seed array...  [9.943s]
Building query seed array...  [2.138s]
Computing hash join...  [7.361s]
Masking low complexity seeds...  [0.23s]
Searching alignments...  [82.427s]
Deallocating memory...  [0s]
Processing query block 1, reference block 12/14, shape 1/2, index chunk 2/4.
Building reference seed array...  [13.594s]
Building query seed array...  [3.133s]
Computing hash join...  [7.037s]
Masking low complexity seeds...  [0.26s]
Searching alignments...  [54.007s]
Deallocating memory...  [0s]
Processing query block 1, reference block 12/14, shape 1/2, index chunk 3/4.
Building reference seed array...  [13.965s]
Building query seed array...  [2.676s]
Computing hash join...  [7.143s]
Masking low complexity seeds...  [0.234s]
Searching alignments...  [48.043s]
Deallocating memory...  [0s]
Processing query block 1, reference block 12/14, shape 1/2, index chunk 4/4.
Building reference seed array...  [10.686s]
Building query seed array...  [2.39s]
Computing hash join...  [6.377s]
Masking low complexity seeds...  [0.265s]
Searching alignments...  [41.78s]
Deallocating memory...  [0s]
Processing query block 1, reference block 12/14, shape 2/2, index chunk 1/4.
Building reference seed array...  [10.739s]
Building query seed array...  [2.301s]
Computing hash join...  [6.52s]
Masking low complexity seeds...  [0.297s]
Searching alignments...  [42.36s]
Deallocating memory...  [0s]
Processing query block 1, reference block 12/14, shape 2/2, index chunk 2/4.
Building reference seed array...  [12.555s]
Building query seed array...  [2.381s]
Computing hash join...  [7.023s]
Masking low complexity seeds...  [0.235s]
Searching alignments...  [33.516s]
Deallocating memory...  [0s]
Processing query block 1, reference block 12/14, shape 2/2, index chunk 3/4.
Building reference seed array...  [14.353s]
Building query seed array...  [2.629s]
Computing hash join...  [7.041s]
Masking low complexity seeds...  [0.234s]
Searching alignments...  [37.17s]
Deallocating memory...  [0s]
Processing query block 1, reference block 12/14, shape 2/2, index chunk 4/4.
Building reference seed array...  [10.748s]
Building query seed array...  [2.092s]
Computing hash join...  [6.822s]
Masking low complexity seeds...  [0.24s]
Searching alignments...  [31.356s]
Deallocating memory...  [0s]
Deallocating buffers...  [2.362s]
Clearing query masking...  [1.677s]
Opening temporary output file...  [0s]
Computing alignments... Loading trace points...  [7.158s]
Sorting trace points...  [1.447s]
Computing alignments...  [34.661s]
Deallocating buffers...  [0.049s]
Loading trace points...  [0.049s]
Sorting trace points...  [1.401s]
Computing alignments...  [34.277s]
Deallocating buffers...  [0.231s]
Loading trace points...  [0.097s]
Sorting trace points...  [1.408s]
Computing alignments...  [34.189s]
Deallocating buffers...  [0.018s]
Loading trace points...  [0.047s]
Sorting trace points...  [1.509s]
Computing alignments...  [34.645s]
Deallocating buffers...  [0.169s]
Loading trace points...  [0.11s]
Sorting trace points...  [1.098s]
Computing alignments...  [35.094s]
Deallocating buffers...  [0.017s]
Loading trace points...  [0.087s]
Sorting trace points...  [1.414s]
Computing alignments...  [35.551s]
Deallocating buffers...  [0.08s]
Loading trace points...  [0.078s]
Sorting trace points...  [1.125s]
Computing alignments...  [34.95s]
Deallocating buffers...  [0.016s]
Loading trace points...  [0.803s]
Sorting trace points...  [1.396s]
Computing alignments...  [34.627s]
Deallocating buffers...  [0.019s]
Loading trace points...  [0.06s]
Sorting trace points...  [1.36s]
Computing alignments...  [35.074s]
Deallocating buffers...  [0.144s]
Loading trace points...  [0.062s]
Sorting trace points...  [1.417s]
Computing alignments...  [35.857s]
Deallocating buffers...  [0.021s]
Loading trace points...  [0.067s]
Sorting trace points...  [1.395s]
Computing alignments...  [35.97s]
Deallocating buffers...  [0.019s]
Loading trace points...  [0.066s]
Sorting trace points...  [1.023s]
Computing alignments...  [35.863s]
Deallocating buffers...  [0.017s]
Loading trace points...  [0.048s]
Sorting trace points...  [1.497s]
Computing alignments...  [35.915s]
Deallocating buffers...  [0.085s]
Loading trace points...  [0.084s]
Sorting trace points...  [1.233s]
Computing alignments...  [35.833s]
Deallocating buffers...  [0.017s]
Loading trace points...  [0.053s]
Sorting trace points...  [1.488s]
Computing alignments...  [36.054s]
Deallocating buffers...  [0.151s]
Loading trace points...  [0s]
Sorting trace points...  [1.48s]
Computing alignments...  [35.508s]
Deallocating buffers...  [0.095s]
Loading trace points...  [0s]
 [595.978s]
Deallocating reference...  [0.063s]
Loading reference sequences...  [29.236s]
Masking reference...  [30.871s]
Initializing dictionary...  [0.078s]
Initializing temporary storage...  [0.007s]
Building reference histograms...  [32.334s]
Allocating buffers...  [0s]
Processing query block 1, reference block 13/14, shape 1/2, index chunk 1/4.
Building reference seed array...  [10.558s]
Building query seed array...  [2.183s]
Computing hash join...  [7.653s]
Masking low complexity seeds...  [0.237s]
Searching alignments...  [82.194s]
Deallocating memory...  [0s]
Processing query block 1, reference block 13/14, shape 1/2, index chunk 2/4.
Building reference seed array...  [12.921s]
Building query seed array...  [3.109s]
Computing hash join...  [7.144s]
Masking low complexity seeds...  [0.227s]
Searching alignments...  [54.287s]
Deallocating memory...  [0s]
Processing query block 1, reference block 13/14, shape 1/2, index chunk 3/4.
Building reference seed array...  [13.812s]
Building query seed array...  [2.787s]
Computing hash join...  [7.234s]
Masking low complexity seeds...  [0.231s]
Searching alignments...  [48.469s]
Deallocating memory...  [0s]
Processing query block 1, reference block 13/14, shape 1/2, index chunk 4/4.
Building reference seed array...  [10.686s]
Building query seed array...  [2.501s]
Computing hash join...  [6.534s]
Masking low complexity seeds...  [0.275s]
Searching alignments...  [42.337s]
Deallocating memory...  [0s]
Processing query block 1, reference block 13/14, shape 2/2, index chunk 1/4.
Building reference seed array...  [10.83s]
Building query seed array...  [2.148s]
Computing hash join...  [6.553s]
Masking low complexity seeds...  [0.262s]
Searching alignments...  [42.386s]
Deallocating memory...  [0s]
Processing query block 1, reference block 13/14, shape 2/2, index chunk 2/4.
Building reference seed array...  [13.121s]
Building query seed array...  [2.459s]
Computing hash join...  [7.092s]
Masking low complexity seeds...  [0.219s]
Searching alignments...  [33.883s]
Deallocating memory...  [0s]
Processing query block 1, reference block 13/14, shape 2/2, index chunk 3/4.
Building reference seed array...  [13.532s]
Building query seed array...  [2.595s]
Computing hash join...  [7.121s]
Masking low complexity seeds...  [0.219s]
Searching alignments...  [37.929s]
Deallocating memory...  [0s]
Processing query block 1, reference block 13/14, shape 2/2, index chunk 4/4.
Building reference seed array...  [10.596s]
Building query seed array...  [2.2s]
Computing hash join...  [6.874s]
Masking low complexity seeds...  [0.288s]
Searching alignments...  [34.098s]
Deallocating memory...  [0s]
Deallocating buffers...  [2.473s]
Clearing query masking...  [1.658s]
Opening temporary output file...  [0s]
Computing alignments... Loading trace points...  [7.256s]
Sorting trace points...  [1.452s]
Computing alignments...  [34.657s]
Deallocating buffers...  [0.06s]
Loading trace points...  [0.064s]
Sorting trace points...  [1.35s]
Computing alignments...  [34.511s]
Deallocating buffers...  [0.315s]
Loading trace points...  [0.144s]
Sorting trace points...  [1.339s]
Computing alignments...  [34.201s]
Deallocating buffers...  [0.015s]
Loading trace points...  [0.001s]
Sorting trace points...  [1.379s]
Computing alignments...  [34.8s]
Deallocating buffers...  [0.015s]
Loading trace points...  [0.053s]
Sorting trace points...  [1.495s]
Computing alignments...  [35.243s]
Deallocating buffers...  [0.14s]
Loading trace points...  [0.121s]
Sorting trace points...  [1.4s]
Computing alignments...  [35.527s]
Deallocating buffers...  [0.019s]
Loading trace points...  [0.087s]
Sorting trace points...  [1.394s]
Computing alignments...  [34.949s]
Deallocating buffers...  [0.018s]
Loading trace points...  [0.059s]
Sorting trace points...  [1.367s]
Computing alignments...  [34.702s]
Deallocating buffers...  [0.019s]
Loading trace points...  [0.001s]
Sorting trace points...  [1.447s]
Computing alignments...  [35.024s]
Deallocating buffers...  [0.036s]
Loading trace points...  [0.05s]
Sorting trace points...  [1.337s]
Computing alignments...  [35.73s]
Deallocating buffers...  [0.018s]
Loading trace points...  [0s]
Sorting trace points...  [1.336s]
Computing alignments...  [35.893s]
Deallocating buffers...  [0.019s]
Loading trace points...  [0.054s]
Sorting trace points...  [1.463s]
Computing alignments...  [35.72s]
Deallocating buffers...  [0.016s]
Loading trace points...  [0.047s]
Sorting trace points...  [1.456s]
Computing alignments...  [35.773s]
Deallocating buffers...  [0.241s]
Loading trace points...  [0.073s]
Sorting trace points...  [1.063s]
Computing alignments...  [36.427s]
Deallocating buffers...  [0.017s]
Loading trace points...  [0.002s]
Sorting trace points...  [1.098s]
Computing alignments...  [36.153s]
Deallocating buffers...  [0.017s]
Loading trace points...  [0s]
Sorting trace points...  [1.354s]
Computing alignments...  [35.427s]
Deallocating buffers...  [0.015s]
Loading trace points...  [0s]
 [595.652s]
Deallocating reference...  [0.057s]
Loading reference sequences...  [23.63s]
Masking reference...  [25.002s]
Initializing dictionary...  [0.064s]
Initializing temporary storage...  [0.007s]
Building reference histograms...  [26.595s]
Allocating buffers...  [0s]
Processing query block 1, reference block 14/14, shape 1/2, index chunk 1/4.
Building reference seed array...  [8.536s]
Building query seed array...  [2.229s]
Computing hash join...  [5.1s]
Masking low complexity seeds...  [0.217s]
Searching alignments...  [66.873s]
Deallocating memory...  [0s]
Processing query block 1, reference block 14/14, shape 1/2, index chunk 2/4.
Building reference seed array...  [10.799s]
Building query seed array...  [3.142s]
Computing hash join...  [4.98s]
Masking low complexity seeds...  [0.232s]
Searching alignments...  [42.487s]
Deallocating memory...  [0s]
Processing query block 1, reference block 14/14, shape 1/2, index chunk 3/4.
Building reference seed array...  [11.444s]
Building query seed array...  [2.839s]
Computing hash join...  [4.872s]
Masking low complexity seeds...  [0.25s]
Searching alignments...  [37.345s]
Deallocating memory...  [0s]
Processing query block 1, reference block 14/14, shape 1/2, index chunk 4/4.
Building reference seed array...  [8.176s]
Building query seed array...  [2.482s]
Computing hash join...  [4.971s]
Masking low complexity seeds...  [0.247s]
Searching alignments...  [33.662s]
Deallocating memory...  [0s]
Processing query block 1, reference block 14/14, shape 2/2, index chunk 1/4.
Building reference seed array...  [8.807s]
Building query seed array...  [2.059s]
Computing hash join...  [4.668s]
Masking low complexity seeds...  [0.234s]
Searching alignments...  [35.045s]
Deallocating memory...  [0s]
Processing query block 1, reference block 14/14, shape 2/2, index chunk 2/4.
Building reference seed array...  [10.435s]
Building query seed array...  [2.455s]
Computing hash join...  [4.541s]
Masking low complexity seeds...  [0.229s]
Searching alignments...  [27.572s]
Deallocating memory...  [0s]
Processing query block 1, reference block 14/14, shape 2/2, index chunk 3/4.
Building reference seed array...  [10.709s]
Building query seed array...  [2.733s]
Computing hash join...  [4.708s]
Masking low complexity seeds...  [0.226s]
Searching alignments...  [30.377s]
Deallocating memory...  [0s]
Processing query block 1, reference block 14/14, shape 2/2, index chunk 4/4.
Building reference seed array...  [9.078s]
Building query seed array...  [2.17s]
Computing hash join...  [4.871s]
Masking low complexity seeds...  [0.204s]
Searching alignments...  [25.994s]
Deallocating memory...  [0s]
Deallocating buffers...  [1.734s]
Clearing query masking...  [1.646s]
Opening temporary output file...  [0.027s]
Computing alignments... Loading trace points...  [11.733s]
Sorting trace points...  [1.953s]
Computing alignments...  [54.644s]
Deallocating buffers...  [0.028s]
Loading trace points...  [0.052s]
Sorting trace points...  [2.025s]
Computing alignments...  [54.585s]
Deallocating buffers...  [0.024s]
Loading trace points...  [0s]
Sorting trace points...  [0.946s]
Computing alignments...  [28.12s]
Deallocating buffers...  [0.015s]
Loading trace points...  [0.051s]
Sorting trace points...  [1.144s]
Computing alignments...  [28.247s]
Deallocating buffers...  [0.016s]
Loading trace points...  [0.044s]
Sorting trace points...  [1.077s]
Computing alignments...  [27.705s]
Deallocating buffers...  [0.015s]
Loading trace points...  [0.056s]
Sorting trace points...  [1.095s]
Computing alignments...  [27.741s]
Deallocating buffers...  [0.013s]
Loading trace points...  [0.078s]
Sorting trace points...  [1.103s]
Computing alignments...  [27.914s]
Deallocating buffers...  [0.015s]
Loading trace points...  [0.088s]
Sorting trace points...  [1.08s]
Computing alignments...  [28.474s]
Deallocating buffers...  [0.013s]
Loading trace points...  [0.051s]
Sorting trace points...  [1.019s]
Computing alignments...  [28.515s]
Deallocating buffers...  [0.013s]
Loading trace points...  [0.051s]
Sorting trace points...  [1.121s]
Computing alignments...  [28.445s]
Deallocating buffers...  [0.016s]
Loading trace points...  [0.072s]
Sorting trace points...  [1.049s]
Computing alignments...  [28.533s]
Deallocating buffers...  [0.013s]
Loading trace points...  [0.081s]
Sorting trace points...  [1.126s]
Computing alignments...  [28.568s]
Deallocating buffers...  [0.015s]
Loading trace points...  [0.05s]
Sorting trace points...  [1.131s]
Computing alignments...  [28.649s]
Deallocating buffers...  [0.016s]
Loading trace points...  [0s]
Sorting trace points...  [1.111s]
Computing alignments...  [28.177s]
Deallocating buffers...  [0.013s]
Loading trace points...  [0s]
 [478.143s]
Deallocating reference...  [0.046s]
Loading reference sequences...  [0.079s]
Deallocating buffers...  [0s]
Joining output blocks... Joining output blocks...  [2307.05s]
 [2307.05s]
Deallocating queries...  [0.103s]
Loading query sequences...  [0s]
Closing the input file...  [0s]
Closing the output file... Loading dictionary...  [4.005s]
 [5.099s]
Closing the database...  [0s]
Cleaning up...  [0s]
Total time = 19506.5s
Reported 2516950172 pairwise alignments, 2516950172 HSPs.
13986782 queries aligned.
DIAMOND BLASTx on /gscratch/srlab/sam/data/P_verrucosa/RNAseq/E9_R1.fastp-trim.20230215.fq.gz complete: E9_R1.blastx.meganized.daa

Now MEGANizing E9_R1.blastx.meganized.daa
Version   MEGAN Community Edition (version 6.22.0, built 19 Feb 2022)
Author(s) Daniel H. Huson
Copyright (C) 2022 Daniel H. Huson. This program comes with ABSOLUTELY NO WARRANTY.
Java version: 17.0.2
Functional classifications to use: EC, EGGNOG, GTDB, INTERPRO2GO, SEED
Loading ncbi.map: 2,396,736
Loading ncbi.tre: 2,396,740
Loading ec.map:     8,200
Loading ec.tre:     8,204
Loading eggnog.map:    30,875
Loading eggnog.tre:    30,986
Loading gtdb.map:   240,103
Loading gtdb.tre:   240,107
Loading interpro2go.map:    14,242
Loading interpro2go.tre:    28,907
Loading seed.map:       961
Loading seed.tre:       962
Meganizing: E9_R1.blastx.meganized.daa
Meganizing init
Annotating DAA file using FAST mode (accession database and first accession per line)
Annotating references
10% 20% 30% 40% 50% 60% 70% 100% (555.3s)
Writing
10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (1.3s)
Binning reads Initializing...
Initializing binning...
Using 'Naive LCA' algorithm for binning: Taxonomy
Using Best-Hit algorithm for binning: SEED
Using Best-Hit algorithm for binning: EGGNOG
Using 'Naive LCA' algorithm for binning: GTDB
Using Best-Hit algorithm for binning: EC
Using Best-Hit algorithm for binning: INTERPRO2GO
Binning reads...
Binning reads Analyzing alignments
10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (4,742.2s)
Total reads:       13,986,782
With hits:          13,986,782 
Alignments:      2,505,021,481
Assig. Taxonomy:    12,664,487
Assig. SEED:           124,071
Assig. EGGNOG:          60,613
Assig. GTDB:           403,815
Assig. EC:           2,395,917
Assig. INTERPRO2GO:  1,304,794
MinSupport set to: 6993
Binning reads Applying min-support & disabled filter to Taxonomy...
10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (0.3s)
Min-supp. changes:       4,063
Binning reads Applying min-support & disabled filter to GTDB...
10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (13.5s)
Min-supp. changes:       3,209
Binning reads Writing classification tables
10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (42.8s)
Binning reads Syncing
100% (0.3s)
Class. Taxonomy:            76
Class. SEED:               505
Class. EGGNOG:           1,759
Class. GTDB:                24
Class. EC:               2,357
Class. INTERPRO2GO:      7,800
Total time:  5,364s
Peak memory: 37.5 of 195.3G
MEGANization of E9_R1.blastx.meganized.daa completed.


Generating MD5 checksum for /gscratch/srlab/sam/data/P_verrucosa/RNAseq/E9_R2.fastp-trim.20230215.fq.gz...
801c7df72b9f8395d8409139c5cd6b6a  /gscratch/srlab/sam/data/P_verrucosa/RNAseq/E9_R2.fastp-trim.20230215.fq.gz

Running DIAMOND BLASTx on /gscratch/srlab/sam/data/P_verrucosa/RNAseq/E9_R2.fastp-trim.20230215.fq.gz.

diamond v2.1.1.155 (C) Max Planck Society for the Advancement of Science
Documentation, support and updates available at http://www.diamondsearch.org
Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021)

#CPU threads: 40
Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1)
Temporary directory: 
Percentage range of top alignment score to report hits: 5
Opening the database...  [0.295s]
Database: /gscratch/srlab/blastdbs/20230215-ncbi-nr/20230215-ncbi-nr.dmnd (type: Diamond database, sequences: 526308523, letters: 207134680681)
Block size = 15000000000
Opening the input file...  [0.741s]
Opening the output file...  [0s]
Loading query sequences...  [78.548s]
Masking queries...  [19.622s]
Algorithm: Double-indexed
Building query histograms...  [20.796s]
Loading reference sequences...  [29.611s]
Masking reference...  [31.999s]
Initializing dictionary...  [0.079s]
Initializing temporary storage...  [0.008s]
Building reference histograms...  [32.423s]
Allocating buffers...  [0s]
Processing query block 1, reference block 1/14, shape 1/2, index chunk 1/4.
Building reference seed array...  [10.144s]
Building query seed array...  [2.163s]
Computing hash join...  [6.898s]
Masking low complexity seeds...  [0.281s]
Searching alignments...  [81.53s]
Deallocating memory...  [0s]
Processing query block 1, reference block 1/14, shape 1/2, index chunk 2/4.
Building reference seed array...  [12.524s]
Building query seed array...  [3.192s]
Computing hash join...  [7.009s]
Masking low complexity seeds...  [0.342s]
Searching alignments...  [54.943s]
Deallocating memory...  [0s]
Processing query block 1, reference block 1/14, shape 1/2, index chunk 3/4.
Building reference seed array...  [13.351s]
Building query seed array...  [2.881s]
Computing hash join...  [7.036s]
Masking low complexity seeds...  [0.401s]
Searching alignments...  [48.055s]
Deallocating memory...  [0s]
Processing query block 1, reference block 1/14, shape 1/2, index chunk 4/4.
Building reference seed array...  [9.944s]
Building query seed array...  [2.489s]
Computing hash join...  [6.533s]
Masking low complexity seeds...  [0.291s]
Searching alignments...  [42.44s]
Deallocating memory...  [0s]
Processing query block 1, reference block 1/14, shape 2/2, index chunk 1/4.
Building reference seed array...  [10.349s]
Building query seed array...  [2.249s]
Computing hash join...  [6.323s]
Masking low complexity seeds...  [0.254s]
Searching alignments...  [44.915s]
Deallocating memory...  [0s]
Processing query block 1, reference block 1/14, shape 2/2, index chunk 2/4.
Building reference seed array...  [12.372s]
Building query seed array...  [2.563s]
Computing hash join...  [6.572s]
Masking low complexity seeds...  [0.355s]
Searching alignments...  [34.016s]
Deallocating memory...  [0s]
Processing query block 1, reference block 1/14, shape 2/2, index chunk 3/4.
Building reference seed array...  [13.655s]
Building query seed array...  [2.518s]
Computing hash join...  [6.513s]
Masking low complexity seeds...  [0.351s]
Searching alignments...  [38.579s]
Deallocating memory...  [0s]
Processing query block 1, reference block 1/14, shape 2/2, index chunk 4/4.
Building reference seed array...  [10.214s]
Building query seed array...  [2.046s]
Computing hash join...  [6.462s]
Masking low complexity seeds...  [0.256s]
Searching alignments...  [32.496s]
Deallocating memory...  [0s]
Deallocating buffers...  [1.356s]
Clearing query masking...  [1.749s]
Opening temporary output file...  [0s]
Computing alignments... Loading trace points...  [7.242s]
Sorting trace points...  [1.295s]
Computing alignments...  [34.924s]
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Computing alignments...  [35.039s]
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Computing alignments...  [35.49s]
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Computing alignments...  [34.638s]
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Computing alignments...  [33.971s]
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Computing alignments...  [34.348s]
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Computing alignments...  [35.098s]
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Computing alignments...  [36.559s]
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Computing alignments...  [36.637s]
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Computing alignments...  [36.664s]
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Computing alignments...  [36.817s]
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Computing alignments...  [36.769s]
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Computing alignments...  [36.859s]
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Computing alignments...  [36.287s]
Deallocating buffers...  [0.016s]
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 [598.609s]
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Loading reference sequences...  [30.277s]
Masking reference...  [30.94s]
Initializing dictionary...  [0.078s]
Initializing temporary storage...  [0.007s]
Building reference histograms...  [32.917s]
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Processing query block 1, reference block 2/14, shape 1/2, index chunk 1/4.
Building reference seed array...  [10.752s]
Building query seed array...  [2.625s]
Computing hash join...  [7.431s]
Masking low complexity seeds...  [0.37s]
Searching alignments...  [79.949s]
Deallocating memory...  [0s]
Processing query block 1, reference block 2/14, shape 1/2, index chunk 2/4.
Building reference seed array...  [12.915s]
Building query seed array...  [2.853s]
Computing hash join...  [6.572s]
Masking low complexity seeds...  [0.267s]
Searching alignments...  [52.344s]
Deallocating memory...  [0s]
Processing query block 1, reference block 2/14, shape 1/2, index chunk 3/4.
Building reference seed array...  [13.673s]
Building query seed array...  [2.714s]
Computing hash join...  [7.387s]
Masking low complexity seeds...  [0.29s]
Searching alignments...  [47.023s]
Deallocating memory...  [0s]
Processing query block 1, reference block 2/14, shape 1/2, index chunk 4/4.
Building reference seed array...  [10.667s]
Building query seed array...  [2.251s]
Computing hash join...  [6.473s]
Masking low complexity seeds...  [0.294s]
Searching alignments...  [42.593s]
Deallocating memory...  [0s]
Processing query block 1, reference block 2/14, shape 2/2, index chunk 1/4.
Building reference seed array...  [10.658s]
Building query seed array...  [2.098s]
Computing hash join...  [6.46s]
Masking low complexity seeds...  [0.288s]
Searching alignments...  [43.601s]
Deallocating memory...  [0s]
Processing query block 1, reference block 2/14, shape 2/2, index chunk 2/4.
Building reference seed array...  [12.687s]
Building query seed array...  [2.331s]
Computing hash join...  [6.952s]
Masking low complexity seeds...  [0.31s]
Searching alignments...  [34.524s]
Deallocating memory...  [0s]
Processing query block 1, reference block 2/14, shape 2/2, index chunk 3/4.
Building reference seed array...  [13.641s]
Building query seed array...  [2.42s]
Computing hash join...  [6.946s]
Masking low complexity seeds...  [0.281s]
Searching alignments...  [37.312s]
Deallocating memory...  [0s]
Processing query block 1, reference block 2/14, shape 2/2, index chunk 4/4.
Building reference seed array...  [10.294s]
Building query seed array...  [2.027s]
Computing hash join...  [6.613s]
Masking low complexity seeds...  [0.264s]
Searching alignments...  [31.813s]
Deallocating memory...  [0s]
Deallocating buffers...  [1.55s]
Clearing query masking...  [1.678s]
Opening temporary output file...  [0s]
Computing alignments... Loading trace points...  [7.304s]
Sorting trace points...  [1.42s]
Computing alignments...  [34.671s]
Deallocating buffers...  [0.015s]
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Sorting trace points...  [1.376s]
Computing alignments...  [35.019s]
Deallocating buffers...  [0.015s]
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Sorting trace points...  [1.299s]
Computing alignments...  [35.239s]
Deallocating buffers...  [0.019s]
Loading trace points...  [0.058s]
Sorting trace points...  [1.335s]
Computing alignments...  [34.172s]
Deallocating buffers...  [0.015s]
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Sorting trace points...  [1.023s]
Computing alignments...  [34.373s]
Deallocating buffers...  [0.017s]
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Sorting trace points...  [1.313s]
Computing alignments...  [34.056s]
Deallocating buffers...  [0.014s]
Loading trace points...  [0.407s]
Sorting trace points...  [1.296s]
Computing alignments...  [34.309s]
Deallocating buffers...  [0.018s]
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Computing alignments...  [33.965s]
Deallocating buffers...  [0.015s]
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Sorting trace points...  [1.07s]
Computing alignments...  [34.977s]
Deallocating buffers...  [0.016s]
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Sorting trace points...  [1.011s]
Computing alignments...  [36.374s]
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Computing alignments...  [36.367s]
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Sorting trace points...  [1.405s]
Computing alignments...  [36.554s]
Deallocating buffers...  [0.019s]
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Computing alignments...  [36.49s]
Deallocating buffers...  [0.02s]
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Sorting trace points...  [1.423s]
Computing alignments...  [36.708s]
Deallocating buffers...  [0.016s]
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Sorting trace points...  [1.391s]
Computing alignments...  [37.006s]
Deallocating buffers...  [0.019s]
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Sorting trace points...  [1.404s]
Computing alignments...  [36.475s]
Deallocating buffers...  [0.016s]
Loading trace points...  [0s]
 [597.123s]
Deallocating reference...  [0.06s]
Loading reference sequences...  [29.219s]
Masking reference...  [32.151s]
Initializing dictionary...  [0.077s]
Initializing temporary storage...  [0.007s]
Building reference histograms...  [32.578s]
Allocating buffers...  [0s]
Processing query block 1, reference block 3/14, shape 1/2, index chunk 1/4.
Building reference seed array...  [9.84s]
Building query seed array...  [2.145s]
Computing hash join...  [6.857s]
Masking low complexity seeds...  [0.399s]
Searching alignments...  [82.09s]
Deallocating memory...  [0s]
Processing query block 1, reference block 3/14, shape 1/2, index chunk 2/4.
Building reference seed array...  [12.884s]
Building query seed array...  [3.027s]
Computing hash join...  [7.107s]
Masking low complexity seeds...  [0.324s]
Searching alignments...  [53.326s]
Deallocating memory...  [0s]
Processing query block 1, reference block 3/14, shape 1/2, index chunk 3/4.
Building reference seed array...  [13.741s]
Building query seed array...  [2.979s]
Computing hash join...  [6.779s]
Masking low complexity seeds...  [0.276s]
Searching alignments...  [46.067s]
Deallocating memory...  [0s]
Processing query block 1, reference block 3/14, shape 1/2, index chunk 4/4.
Building reference seed array...  [10.486s]
Building query seed array...  [2.416s]
Computing hash join...  [6.712s]
Masking low complexity seeds...  [0.276s]
Searching alignments...  [43.099s]
Deallocating memory...  [0s]
Processing query block 1, reference block 3/14, shape 2/2, index chunk 1/4.
Building reference seed array...  [10.698s]
Building query seed array...  [2.196s]
Computing hash join...  [6.403s]
Masking low complexity seeds...  [0.252s]
Searching alignments...  [44.845s]
Deallocating memory...  [0s]
Processing query block 1, reference block 3/14, shape 2/2, index chunk 2/4.
Building reference seed array...  [13.117s]
Building query seed array...  [2.415s]
Computing hash join...  [6.506s]
Masking low complexity seeds...  [0.262s]
Searching alignments...  [34.308s]
Deallocating memory...  [0s]
Processing query block 1, reference block 3/14, shape 2/2, index chunk 3/4.
Building reference seed array...  [13.619s]
Building query seed array...  [2.464s]
Computing hash join...  [6.461s]
Masking low complexity seeds...  [0.272s]
Searching alignments...  [39.507s]
Deallocating memory...  [0s]
Processing query block 1, reference block 3/14, shape 2/2, index chunk 4/4.
Building reference seed array...  [10.114s]
Building query seed array...  [1.995s]
Computing hash join...  [6.296s]
Masking low complexity seeds...  [0.265s]
Searching alignments...  [32.19s]
Deallocating memory...  [0s]
Deallocating buffers...  [1.634s]
Clearing query masking...  [1.583s]
Opening temporary output file...  [0s]
Computing alignments... Loading trace points...  [7.021s]
Sorting trace points...  [1.43s]
Computing alignments...  [34.907s]
Deallocating buffers...  [0.017s]
Loading trace points...  [0.073s]
Sorting trace points...  [1.29s]
Computing alignments...  [34.938s]
Deallocating buffers...  [0.015s]
Loading trace points...  [0.104s]
Sorting trace points...  [1.33s]
Computing alignments...  [35.017s]
Deallocating buffers...  [0.015s]
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Sorting trace points...  [1.401s]
Computing alignments...  [34.149s]
Deallocating buffers...  [0.015s]
Loading trace points...  [0.065s]
Sorting trace points...  [1.456s]
Computing alignments...  [34.286s]
Deallocating buffers...  [0.105s]
Loading trace points...  [0.03s]
Sorting trace points...  [1.308s]
Computing alignments...  [33.846s]
Deallocating buffers...  [0.018s]
Loading trace points...  [0.055s]
Sorting trace points...  [1.316s]
Computing alignments...  [34.235s]
Deallocating buffers...  [0.018s]
Loading trace points...  [0.169s]
Sorting trace points...  [1.287s]
Computing alignments...  [33.873s]
Deallocating buffers...  [0.022s]
Loading trace points...  [0.058s]
Sorting trace points...  [1.365s]
Computing alignments...  [34.968s]
Deallocating buffers...  [0.015s]
Loading trace points...  [0.103s]
Sorting trace points...  [1.311s]
Computing alignments...  [36.344s]
Deallocating buffers...  [0.019s]
Loading trace points...  [0.082s]
Sorting trace points...  [1.45s]
Computing alignments...  [36.469s]
Deallocating buffers...  [0.016s]
Loading trace points...  [0.086s]
Sorting trace points...  [1.192s]
Computing alignments...  [36.52s]
Deallocating buffers...  [0.017s]
Loading trace points...  [0.048s]
Sorting trace points...  [1.139s]
Computing alignments...  [36.682s]
Deallocating buffers...  [0.017s]
Loading trace points...  [0.061s]
Sorting trace points...  [1.214s]
Computing alignments...  [36.699s]
Deallocating buffers...  [0.018s]
Loading trace points...  [0.082s]
Sorting trace points...  [1.441s]
Computing alignments...  [36.618s]
Deallocating buffers...  [0.02s]
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Sorting trace points...  [1.35s]
Computing alignments...  [36.169s]
Deallocating buffers...  [0.019s]
Loading trace points...  [0s]
 [595.653s]
Deallocating reference...  [0.068s]
Loading reference sequences...  [29.951s]
Masking reference...  [31.674s]
Initializing dictionary...  [0.077s]
Initializing temporary storage...  [0.007s]
Building reference histograms...  [33.033s]
Allocating buffers...  [0s]
Processing query block 1, reference block 4/14, shape 1/2, index chunk 1/4.
Building reference seed array...  [10.438s]
Building query seed array...  [2.199s]
Computing hash join...  [7.094s]
Masking low complexity seeds...  [0.618s]
Searching alignments...  [80.551s]
Deallocating memory...  [0s]
Processing query block 1, reference block 4/14, shape 1/2, index chunk 2/4.
Building reference seed array...  [12.658s]
Building query seed array...  [3.114s]
Computing hash join...  [7.123s]
Masking low complexity seeds...  [0.317s]
Searching alignments...  [53.683s]
Deallocating memory...  [0s]
Processing query block 1, reference block 4/14, shape 1/2, index chunk 3/4.
Building reference seed array...  [13.613s]
Building query seed array...  [3.009s]
Computing hash join...  [6.772s]
Masking low complexity seeds...  [0.293s]
Searching alignments...  [47.611s]
Deallocating memory...  [0s]
Processing query block 1, reference block 4/14, shape 1/2, index chunk 4/4.
Building reference seed array...  [9.998s]
Building query seed array...  [2.475s]
Computing hash join...  [6.35s]
Masking low complexity seeds...  [0.265s]
Searching alignments...  [43.459s]
Deallocating memory...  [0s]
Processing query block 1, reference block 4/14, shape 2/2, index chunk 1/4.
Building reference seed array...  [10.31s]
Building query seed array...  [2.155s]
Computing hash join...  [6.388s]
Masking low complexity seeds...  [0.258s]
Searching alignments...  [44.462s]
Deallocating memory...  [0s]
Processing query block 1, reference block 4/14, shape 2/2, index chunk 2/4.
Building reference seed array...  [12.181s]
Building query seed array...  [2.481s]
Computing hash join...  [6.665s]
Masking low complexity seeds...  [0.264s]
Searching alignments...  [34.423s]
Deallocating memory...  [0s]
Processing query block 1, reference block 4/14, shape 2/2, index chunk 3/4.
Building reference seed array...  [13.765s]
Building query seed array...  [2.597s]
Computing hash join...  [6.706s]
Masking low complexity seeds...  [0.253s]
Searching alignments...  [36.921s]
Deallocating memory...  [0s]
Processing query block 1, reference block 4/14, shape 2/2, index chunk 4/4.
Building reference seed array...  [10.24s]
Building query seed array...  [2.207s]
Computing hash join...  [6.532s]
Masking low complexity seeds...  [0.303s]
Searching alignments...  [32.004s]
Deallocating memory...  [0s]
Deallocating buffers...  [1.63s]
Clearing query masking...  [1.675s]
Opening temporary output file...  [0s]
Computing alignments... Loading trace points...  [7.295s]
Sorting trace points...  [1.366s]
Computing alignments...  [34.732s]
Deallocating buffers...  [0.015s]
Loading trace points...  [0.052s]
Sorting trace points...  [1.132s]
Computing alignments...  [34.783s]
Deallocating buffers...  [0.016s]
Loading trace points...  [0.057s]
Sorting trace points...  [1.059s]
Computing alignments...  [35.225s]
Deallocating buffers...  [0.017s]
Loading trace points...  [0.051s]
Sorting trace points...  [0.948s]
Computing alignments...  [34.366s]
Deallocating buffers...  [0.017s]
Loading trace points...  [0.062s]
Sorting trace points...  [1.132s]
Computing alignments...  [34.468s]
Deallocating buffers...  [0.017s]
Loading trace points...  [0.003s]
Sorting trace points...  [1.141s]
Computing alignments...  [34.061s]
Deallocating buffers...  [0.015s]
Loading trace points...  [0.002s]
Sorting trace points...  [1.263s]
Computing alignments...  [34.383s]
Deallocating buffers...  [0.015s]
Loading trace points...  [0.07s]
Sorting trace points...  [1.463s]
Computing alignments...  [33.804s]
Deallocating buffers...  [0.113s]
Loading trace points...  [0.056s]
Sorting trace points...  [1.462s]
Computing alignments...  [35.123s]
Deallocating buffers...  [0.019s]
Loading trace points...  [0.075s]
Sorting trace points...  [1.042s]
Computing alignments...  [36.585s]
Deallocating buffers...  [0.018s]
Loading trace points...  [0.001s]
Sorting trace points...  [1.031s]
Computing alignments...  [36.584s]
Deallocating buffers...  [0.018s]
Loading trace points...  [0.113s]
Sorting trace points...  [1.471s]
Computing alignments...  [36.508s]
Deallocating buffers...  [0.019s]
Loading trace points...  [0.043s]
Sorting trace points...  [1.414s]
Computing alignments...  [36.856s]
Deallocating buffers...  [0.017s]
Loading trace points...  [0.044s]
Sorting trace points...  [1.033s]
Computing alignments...  [36.761s]
Deallocating buffers...  [0.017s]
Loading trace points...  [0.059s]
Sorting trace points...  [1.045s]
Computing alignments...  [36.8s]
Deallocating buffers...  [0.018s]
Loading trace points...  [0s]
Sorting trace points...  [1.428s]
Computing alignments...  [36.365s]
Deallocating buffers...  [0.016s]
Loading trace points...  [0s]
 [595.373s]
Deallocating reference...  [0.058s]
Loading reference sequences...  [29.432s]
Masking reference...  [30.897s]
Initializing dictionary...  [0.077s]
Initializing temporary storage...  [0.007s]
Building reference histograms...  [32.697s]
Allocating buffers...  [0s]
Processing query block 1, reference block 5/14, shape 1/2, index chunk 1/4.
Building reference seed array...  [10.097s]
Building query seed array...  [2.154s]
Computing hash join...  [6.785s]
Masking low complexity seeds...  [0.371s]
Searching alignments...  [79.729s]
Deallocating memory...  [0s]
Processing query block 1, reference block 5/14, shape 1/2, index chunk 2/4.
Building reference seed array...  [12.852s]
Building query seed array...  [3.078s]
Computing hash join...  [6.407s]
Masking low complexity seeds...  [0.287s]
Searching alignments...  [51.638s]
Deallocating memory...  [0s]
Processing query block 1, reference block 5/14, shape 1/2, index chunk 3/4.
Building reference seed array...  [14.271s]
Building query seed array...  [2.987s]
Computing hash join...  [5.531s]
Masking low complexity seeds...  [0.291s]
Searching alignments...  [45.67s]
Deallocating memory...  [0s]
Processing query block 1, reference block 5/14, shape 1/2, index chunk 4/4.
Building reference seed array...  [10.422s]
Building query seed array...  [2.286s]
Computing hash join...  [6.248s]
Masking low complexity seeds...  [0.335s]
Searching alignments...  [41.745s]
Deallocating memory...  [0s]
Processing query block 1, reference block 5/14, shape 2/2, index chunk 1/4.
Building reference seed array...  [10.777s]
Building query seed array...  [2.144s]
Computing hash join...  [5.927s]
Masking low complexity seeds...  [0.279s]
Searching alignments...  [44.514s]
Deallocating memory...  [0s]
Processing query block 1, reference block 5/14, shape 2/2, index chunk 2/4.
Building reference seed array...  [13.131s]
Building query seed array...  [2.463s]
Computing hash join...  [6.42s]
Masking low complexity seeds...  [0.29s]
Searching alignments...  [35.17s]
Deallocating memory...  [0s]
Processing query block 1, reference block 5/14, shape 2/2, index chunk 3/4.
Building reference seed array...  [13.739s]
Building query seed array...  [2.753s]
Computing hash join...  [6.132s]
Masking low complexity seeds...  [0.244s]
Searching alignments...  [37.02s]
Deallocating memory...  [0s]
Processing query block 1, reference block 5/14, shape 2/2, index chunk 4/4.
Building reference seed array...  [10.822s]
Building query seed array...  [2.299s]
Computing hash join...  [5.779s]
Masking low complexity seeds...  [0.273s]
Searching alignments...  [31.75s]
Deallocating memory...  [0s]
Deallocating buffers...  [2.695s]
Clearing query masking...  [1.552s]
Opening temporary output file...  [0s]
Computing alignments... Loading trace points...  [7.182s]
Sorting trace points...  [1.451s]
Computing alignments...  [34.769s]
Deallocating buffers...  [0.017s]
Loading trace points...  [0.061s]
Sorting trace points...  [1.359s]
Computing alignments...  [35.045s]
Deallocating buffers...  [0.015s]
Loading trace points...  [0.043s]
Sorting trace points...  [1.336s]
Computing alignments...  [35.408s]
Deallocating buffers...  [0.016s]
Loading trace points...  [0.05s]
Sorting trace points...  [0.938s]
Computing alignments...  [34.426s]
Deallocating buffers...  [0.016s]
Loading trace points...  [0.051s]
Sorting trace points...  [1.202s]
Computing alignments...  [34.438s]
Deallocating buffers...  [0.066s]
Loading trace points...  [0.001s]
Sorting trace points...  [0.951s]
Computing alignments...  [33.935s]
Deallocating buffers...  [0.016s]
Loading trace points...  [0.001s]
Sorting trace points...  [1.363s]
Computing alignments...  [34.252s]
Deallocating buffers...  [0.018s]
Loading trace points...  [0.054s]
Sorting trace points...  [1.39s]
Computing alignments...  [33.84s]
Deallocating buffers...  [0.19s]
Loading trace points...  [0.05s]
Sorting trace points...  [1.423s]
Computing alignments...  [34.801s]
Deallocating buffers...  [0.05s]
Loading trace points...  [0.059s]
Sorting trace points...  [1.14s]
Computing alignments...  [36.294s]
Deallocating buffers...  [0.018s]
Loading trace points...  [0s]
Sorting trace points...  [1.44s]
Computing alignments...  [36.439s]
Deallocating buffers...  [0.016s]
Loading trace points...  [0.086s]
Sorting trace points...  [1.452s]
Computing alignments...  [36.425s]
Deallocating buffers...  [0.019s]
Loading trace points...  [0.046s]
Sorting trace points...  [1.588s]
Computing alignments...  [36.572s]
Deallocating buffers...  [0.159s]
Loading trace points...  [0.227s]
Sorting trace points...  [1.441s]
Computing alignments...  [36.525s]
Deallocating buffers...  [0.019s]
Loading trace points...  [0.047s]
Sorting trace points...  [1.253s]
Computing alignments...  [36.688s]
Deallocating buffers...  [0.016s]
Loading trace points...  [0s]
Sorting trace points...  [1.112s]
Computing alignments...  [36.188s]
Deallocating buffers...  [0.052s]
Loading trace points...  [0s]
 [595.647s]
Deallocating reference...  [0.059s]
Loading reference sequences...  [32.043s]
Masking reference...  [31.362s]
Initializing dictionary...  [0.078s]
Initializing temporary storage...  [0.008s]
Building reference histograms...  [32.815s]
Allocating buffers...  [0s]
Processing query block 1, reference block 6/14, shape 1/2, index chunk 1/4.
Building reference seed array...  [10.082s]
Building query seed array...  [2.182s]
Computing hash join...  [7.135s]
Masking low complexity seeds...  [0.458s]
Searching alignments...  [79.663s]
Deallocating memory...  [0s]
Processing query block 1, reference block 6/14, shape 1/2, index chunk 2/4.
Building reference seed array...  [12.697s]
Building query seed array...  [2.979s]
Computing hash join...  [6.727s]
Masking low complexity seeds...  [0.272s]
Searching alignments...  [52.208s]
Deallocating memory...  [0s]
Processing query block 1, reference block 6/14, shape 1/2, index chunk 3/4.
Building reference seed array...  [13.655s]
Building query seed array...  [2.881s]
Computing hash join...  [6.397s]
Masking low complexity seeds...  [0.302s]
Searching alignments...  [46.532s]
Deallocating memory...  [0s]
Processing query block 1, reference block 6/14, shape 1/2, index chunk 4/4.
Building reference seed array...  [10.222s]
Building query seed array...  [2.443s]
Computing hash join...  [7.041s]
Masking low complexity seeds...  [0.431s]
Searching alignments...  [41.985s]
Deallocating memory...  [0s]
Processing query block 1, reference block 6/14, shape 2/2, index chunk 1/4.
Building reference seed array...  [10.465s]
Building query seed array...  [2.156s]
Computing hash join...  [6.216s]
Masking low complexity seeds...  [0.245s]
Searching alignments...  [42.632s]
Deallocating memory...  [0s]
Processing query block 1, reference block 6/14, shape 2/2, index chunk 2/4.
Building reference seed array...  [12.904s]
Building query seed array...  [2.551s]
Computing hash join...  [6.347s]
Masking low complexity seeds...  [0.29s]
Searching alignments...  [33.919s]
Deallocating memory...  [0s]
Processing query block 1, reference block 6/14, shape 2/2, index chunk 3/4.
Building reference seed array...  [13.336s]
Building query seed array...  [2.555s]
Computing hash join...  [6.136s]
Masking low complexity seeds...  [0.275s]
Searching alignments...  [37.104s]
Deallocating memory...  [0s]
Processing query block 1, reference block 6/14, shape 2/2, index chunk 4/4.
Building reference seed array...  [10.581s]
Building query seed array...  [2.147s]
Computing hash join...  [6.431s]
Masking low complexity seeds...  [0.291s]
Searching alignments...  [31.769s]
Deallocating memory...  [0s]
Deallocating buffers...  [1.894s]
Clearing query masking...  [1.636s]
Opening temporary output file...  [0s]
Computing alignments... Loading trace points...  [7.456s]
Sorting trace points...  [1.389s]
Computing alignments...  [34.168s]
Deallocating buffers...  [0.017s]
Loading trace points...  [0s]
Sorting trace points...  [1.316s]
Computing alignments...  [34.407s]
Deallocating buffers...  [0.019s]
Loading trace points...  [0.097s]
Sorting trace points...  [1.329s]
Computing alignments...  [34.793s]
Deallocating buffers...  [0.019s]
Loading trace points...  [0.071s]
Sorting trace points...  [1.169s]
Computing alignments...  [33.923s]
Deallocating buffers...  [0.015s]
Loading trace points...  [0.761s]
Sorting trace points...  [1.333s]
Computing alignments...  [33.763s]
Deallocating buffers...  [0.018s]
Loading trace points...  [0.108s]
Sorting trace points...  [1.314s]
Computing alignments...  [33.6s]
Deallocating buffers...  [0.018s]
Loading trace points...  [0.078s]
Sorting trace points...  [1.228s]
Computing alignments...  [34.116s]
Deallocating buffers...  [0.208s]
Loading trace points...  [0.099s]
Sorting trace points...  [1.224s]
Computing alignments...  [33.487s]
Deallocating buffers...  [0.018s]
Loading trace points...  [0.068s]
Sorting trace points...  [0.977s]
Computing alignments...  [34.774s]
Deallocating buffers...  [0.017s]
Loading trace points...  [0.064s]
Sorting trace points...  [1.606s]
Computing alignments...  [36.398s]
Deallocating buffers...  [0.145s]
Loading trace points...  [0.071s]
Sorting trace points...  [1.423s]
Computing alignments...  [36.311s]
Deallocating buffers...  [0.016s]
Loading trace points...  [0.045s]
Sorting trace points...  [1.401s]
Computing alignments...  [36.146s]
Deallocating buffers...  [0.016s]
Loading trace points...  [0.076s]
Sorting trace points...  [1.424s]
Computing alignments...  [36.228s]
Deallocating buffers...  [0.02s]
Loading trace points...  [0.051s]
Sorting trace points...  [1.041s]
Computing alignments...  [36.271s]
Deallocating buffers...  [0.017s]
Loading trace points...  [0.049s]
Sorting trace points...  [1.445s]
Computing alignments...  [36.513s]
Deallocating buffers...  [0.016s]
Loading trace points...  [0s]
Sorting trace points...  [1.32s]
Computing alignments...  [35.878s]
Deallocating buffers...  [0.016s]
Loading trace points...  [0s]
 [591.538s]
Deallocating reference...  [0.061s]
Loading reference sequences...  [29.607s]
Masking reference...  [30.906s]
Initializing dictionary...  [0.077s]
Initializing temporary storage...  [0.006s]
Building reference histograms...  [32.814s]
Allocating buffers...  [0.001s]
Processing query block 1, reference block 7/14, shape 1/2, index chunk 1/4.
Building reference seed array...  [10.062s]
Building query seed array...  [2.17s]
Computing hash join...  [7.379s]
Masking low complexity seeds...  [0.643s]
Searching alignments...  [81.096s]
Deallocating memory...  [0s]
Processing query block 1, reference block 7/14, shape 1/2, index chunk 2/4.
Building reference seed array...  [12.848s]
Building query seed array...  [2.993s]
Computing hash join...  [7.386s]
Masking low complexity seeds...  [0.272s]
Searching alignments...  [52.306s]
Deallocating memory...  [0s]
Processing query block 1, reference block 7/14, shape 1/2, index chunk 3/4.
Building reference seed array...  [13.872s]
Building query seed array...  [3.01s]
Computing hash join...  [7.111s]
Masking low complexity seeds...  [0.294s]
Searching alignments...  [46.709s]
Deallocating memory...  [0s]
Processing query block 1, reference block 7/14, shape 1/2, index chunk 4/4.
Building reference seed array...  [10.69s]
Building query seed array...  [2.358s]
Computing hash join...  [6.621s]
Masking low complexity seeds...  [0.265s]
Searching alignments...  [42.663s]
Deallocating memory...  [0s]
Processing query block 1, reference block 7/14, shape 2/2, index chunk 1/4.
Building reference seed array...  [10.569s]
Building query seed array...  [2.114s]
Computing hash join...  [6.325s]
Masking low complexity seeds...  [0.269s]
Searching alignments...  [44.488s]
Deallocating memory...  [0s]
Processing query block 1, reference block 7/14, shape 2/2, index chunk 2/4.
Building reference seed array...  [12.943s]
Building query seed array...  [2.478s]
Computing hash join...  [6.807s]
Masking low complexity seeds...  [0.288s]
Searching alignments...  [35.088s]
Deallocating memory...  [0s]
Processing query block 1, reference block 7/14, shape 2/2, index chunk 3/4.
Building reference seed array...  [13.736s]
Building query seed array...  [2.562s]
Computing hash join...  [6.614s]
Masking low complexity seeds...  [0.272s]
Searching alignments...  [38.48s]
Deallocating memory...  [0s]
Processing query block 1, reference block 7/14, shape 2/2, index chunk 4/4.
Building reference seed array...  [10.414s]
Building query seed array...  [2.1s]
Computing hash join...  [6.549s]
Masking low complexity seeds...  [0.27s]
Searching alignments...  [32.572s]
Deallocating memory...  [0s]
Deallocating buffers...  [1.897s]
Clearing query masking...  [1.653s]
Opening temporary output file...  [0s]
Computing alignments... Loading trace points...  [7.164s]
Sorting trace points...  [1.453s]
Computing alignments...  [34.807s]
Deallocating buffers...  [0.016s]
Loading trace points...  [0.056s]
Sorting trace points...  [1.481s]
Computing alignments...  [35.152s]
Deallocating buffers...  [0.299s]
Loading trace points...  [0.053s]
Sorting trace points...  [1.091s]
Computing alignments...  [35.273s]
Deallocating buffers...  [0.017s]
Loading trace points...  [0.177s]
Sorting trace points...  [1.019s]
Computing alignments...  [34.445s]
Deallocating buffers...  [0.016s]
Loading trace points...  [0.081s]
Sorting trace points...  [1.059s]
Computing alignments...  [34.398s]
Deallocating buffers...  [0.017s]
Loading trace points...  [0.049s]
Sorting trace points...  [1.344s]
Computing alignments...  [33.954s]
Deallocating buffers...  [0.018s]
Loading trace points...  [0.058s]
Sorting trace points...  [1.166s]
Computing alignments...  [34.386s]
Deallocating buffers...  [0.015s]
Loading trace points...  [0.052s]
Sorting trace points...  [1.305s]
Computing alignments...  [33.915s]
Deallocating buffers...  [0.014s]
Loading trace points...  [0.043s]
Sorting trace points...  [1.412s]
Computing alignments...  [35.107s]
Deallocating buffers...  [0.015s]
Loading trace points...  [0.072s]
Sorting trace points...  [1.332s]
Computing alignments...  [36.476s]
Deallocating buffers...  [0.12s]
Loading trace points...  [0.033s]
Sorting trace points...  [1.432s]
Computing alignments...  [36.686s]
Deallocating buffers...  [0.022s]
Loading trace points...  [0.06s]
Sorting trace points...  [1.446s]
Computing alignments...  [36.574s]
Deallocating buffers...  [0.016s]
Loading trace points...  [0.055s]
Sorting trace points...  [1.226s]
Computing alignments...  [36.713s]
Deallocating buffers...  [0.017s]
Loading trace points...  [0.096s]
Sorting trace points...  [1.415s]
Computing alignments...  [36.822s]
Deallocating buffers...  [0.136s]
Loading trace points...  [0.064s]
Sorting trace points...  [1.462s]
Computing alignments...  [36.982s]
Deallocating buffers...  [0.02s]
Loading trace points...  [0s]
Sorting trace points...  [1.493s]
Computing alignments...  [36.653s]
Deallocating buffers...  [0.137s]
Loading trace points...  [0s]
 [598.691s]
Deallocating reference...  [0.062s]
Loading reference sequences...  [29.121s]
Masking reference...  [30.888s]
Initializing dictionary...  [0.077s]
Initializing temporary storage...  [0.006s]
Building reference histograms...  [33.174s]
Allocating buffers...  [0s]
Processing query block 1, reference block 8/14, shape 1/2, index chunk 1/4.
Building reference seed array...  [10.279s]
Building query seed array...  [2.209s]
Computing hash join...  [7.268s]
Masking low complexity seeds...  [0.549s]
Searching alignments...  [82.397s]
Deallocating memory...  [0s]
Processing query block 1, reference block 8/14, shape 1/2, index chunk 2/4.
Building reference seed array...  [12.785s]
Building query seed array...  [2.906s]
Computing hash join...  [7.574s]
Masking low complexity seeds...  [0.335s]
Searching alignments...  [53.754s]
Deallocating memory...  [0s]
Processing query block 1, reference block 8/14, shape 1/2, index chunk 3/4.
Building reference seed array...  [14.056s]
Building query seed array...  [2.855s]
Computing hash join...  [7.148s]
Masking low complexity seeds...  [0.31s]
Searching alignments...  [46.018s]
Deallocating memory...  [0s]
Processing query block 1, reference block 8/14, shape 1/2, index chunk 4/4.
Building reference seed array...  [10.65s]
Building query seed array...  [2.446s]
Computing hash join...  [6.802s]
Masking low complexity seeds...  [0.275s]
Searching alignments...  [42.042s]
Deallocating memory...  [0s]
Processing query block 1, reference block 8/14, shape 2/2, index chunk 1/4.
Building reference seed array...  [10.9s]
Building query seed array...  [2.131s]
Computing hash join...  [6.32s]
Masking low complexity seeds...  [0.268s]
Searching alignments...  [42.807s]
Deallocating memory...  [0s]
Processing query block 1, reference block 8/14, shape 2/2, index chunk 2/4.
Building reference seed array...  [12.639s]
Building query seed array...  [2.48s]
Computing hash join...  [6.609s]
Masking low complexity seeds...  [0.306s]
Searching alignments...  [34.369s]
Deallocating memory...  [0.009s]
Processing query block 1, reference block 8/14, shape 2/2, index chunk 3/4.
Building reference seed array...  [13.6s]
Building query seed array...  [2.652s]
Computing hash join...  [6.296s]
Masking low complexity seeds...  [0.284s]
Searching alignments...  [37.164s]
Deallocating memory...  [0s]
Processing query block 1, reference block 8/14, shape 2/2, index chunk 4/4.
Building reference seed array...  [10.492s]
Building query seed array...  [2.181s]
Computing hash join...  [6.186s]
Masking low complexity seeds...  [0.264s]
Searching alignments...  [31.711s]
Deallocating memory...  [0s]
Deallocating buffers...  [2.196s]
Clearing query masking...  [1.712s]
Opening temporary output file...  [0.002s]
Computing alignments... Loading trace points...  [7.062s]
Sorting trace points...  [1.446s]
Computing alignments...  [34.687s]
Deallocating buffers...  [0.017s]
Loading trace points...  [0.064s]
Sorting trace points...  [1.548s]
Computing alignments...  [35.218s]
Deallocating buffers...  [0.32s]
Loading trace points...  [0.052s]
Sorting trace points...  [1.099s]
Computing alignments...  [35.234s]
Deallocating buffers...  [0.017s]
Loading trace points...  [0.048s]
Sorting trace points...  [1.334s]
Computing alignments...  [34.462s]
Deallocating buffers...  [0.015s]
Loading trace points...  [0.061s]
Sorting trace points...  [1.199s]
Computing alignments...  [34.497s]
Deallocating buffers...  [0.017s]
Loading trace points...  [0.065s]
Sorting trace points...  [1.218s]
Computing alignments...  [34.021s]
Deallocating buffers...  [0.017s]
Loading trace points...  [0.046s]
Sorting trace points...  [1.344s]
Computing alignments...  [34.428s]
Deallocating buffers...  [0.107s]
Loading trace points...  [0.059s]
Sorting trace points...  [1.052s]
Computing alignments...  [33.866s]
Deallocating buffers...  [0.015s]
Loading trace points...  [0.055s]
Sorting trace points...  [1.244s]
Computing alignments...  [35.172s]
Deallocating buffers...  [0.015s]
Loading trace points...  [0.067s]
Sorting trace points...  [1.46s]
Computing alignments...  [36.463s]
Deallocating buffers...  [0.016s]
Loading trace points...  [0.089s]
Sorting trace points...  [1.49s]
Computing alignments...  [36.585s]
Deallocating buffers...  [0.203s]
Loading trace points...  [0.065s]
Sorting trace points...  [1.456s]
Computing alignments...  [36.552s]
Deallocating buffers...  [0.016s]
Loading trace points...  [0.057s]
Sorting trace points...  [1.205s]
Computing alignments...  [36.683s]
Deallocating buffers...  [0.017s]
Loading trace points...  [0.091s]
Sorting trace points...  [1.008s]
Computing alignments...  [36.683s]
Deallocating buffers...  [0.018s]
Loading trace points...  [0.061s]
Sorting trace points...  [1.425s]
Computing alignments...  [36.737s]
Deallocating buffers...  [0.107s]
Loading trace points...  [0s]
Sorting trace points...  [1.391s]
Computing alignments...  [36.279s]
Deallocating buffers...  [0.016s]
Loading trace points...  [0s]
 [597.506s]
Deallocating reference...  [0.06s]
Loading reference sequences...  [29.173s]
Masking reference...  [30.943s]
Initializing dictionary...  [0.077s]
Initializing temporary storage...  [0.005s]
Building reference histograms...  [33.209s]
Allocating buffers...  [0s]
Processing query block 1, reference block 9/14, shape 1/2, index chunk 1/4.
Building reference seed array...  [10.157s]
Building query seed array...  [2.122s]
Computing hash join...  [7.128s]
Masking low complexity seeds...  [0.588s]
Searching alignments...  [79.858s]
Deallocating memory...  [0s]
Processing query block 1, reference block 9/14, shape 1/2, index chunk 2/4.
Building reference seed array...  [13.055s]
Building query seed array...  [2.839s]
Computing hash join...  [7.454s]
Masking low complexity seeds...  [0.342s]
Searching alignments...  [52.76s]
Deallocating memory...  [0s]
Processing query block 1, reference block 9/14, shape 1/2, index chunk 3/4.
Building reference seed array...  [13.77s]
Building query seed array...  [2.766s]
Computing hash join...  [7.178s]
Masking low complexity seeds...  [0.277s]
Searching alignments...  [47.403s]
Deallocating memory...  [0s]
Processing query block 1, reference block 9/14, shape 1/2, index chunk 4/4.
Building reference seed array...  [10.997s]
Building query seed array...  [2.486s]
Computing hash join...  [6.86s]
Masking low complexity seeds...  [0.269s]
Searching alignments...  [43.349s]
Deallocating memory...  [0s]
Processing query block 1, reference block 9/14, shape 2/2, index chunk 1/4.
Building reference seed array...  [10.447s]
Building query seed array...  [2.22s]
Computing hash join...  [6.555s]
Masking low complexity seeds...  [0.278s]
Searching alignments...  [46.179s]
Deallocating memory...  [0s]
Processing query block 1, reference block 9/14, shape 2/2, index chunk 2/4.
Building reference seed array...  [12.981s]
Building query seed array...  [2.434s]
Computing hash join...  [7.157s]
Masking low complexity seeds...  [0.369s]
Searching alignments...  [34.904s]
Deallocating memory...  [0s]
Processing query block 1, reference block 9/14, shape 2/2, index chunk 3/4.
Building reference seed array...  [13.474s]
Building query seed array...  [2.611s]
Computing hash join...  [7.099s]
Masking low complexity seeds...  [0.259s]
Searching alignments...  [38.121s]
Deallocating memory...  [0s]
Processing query block 1, reference block 9/14, shape 2/2, index chunk 4/4.
Building reference seed array...  [10.161s]
Building query seed array...  [2.015s]
Computing hash join...  [6.617s]
Masking low complexity seeds...  [0.262s]
Searching alignments...  [32.28s]
Deallocating memory...  [0s]
Deallocating buffers...  [2.036s]
Clearing query masking...  [1.705s]
Opening temporary output file...  [0.002s]
Computing alignments... Loading trace points...  [7.333s]
Sorting trace points...  [1.457s]
Computing alignments...  [34.788s]
Deallocating buffers...  [0.017s]
Loading trace points...  [0.049s]
Sorting trace points...  [1.43s]
Computing alignments...  [34.968s]
Deallocating buffers...  [0.155s]
Loading trace points...  [0.068s]
Sorting trace points...  [1.085s]
Computing alignments...  [35.177s]
Deallocating buffers...  [0.017s]
Loading trace points...  [0.052s]
Sorting trace points...  [1.348s]
Computing alignments...  [34.42s]
Deallocating buffers...  [0.149s]
Loading trace points...  [0.056s]
Sorting trace points...  [1.398s]
Computing alignments...  [34.461s]
Deallocating buffers...  [0.015s]
Loading trace points...  [0s]
Sorting trace points...  [1.097s]
Computing alignments...  [34.101s]
Deallocating buffers...  [0.016s]
Loading trace points...  [0.001s]
Sorting trace points...  [1.343s]
Computing alignments...  [34.379s]
Deallocating buffers...  [0.019s]
Loading trace points...  [0.067s]
Sorting trace points...  [1.27s]
Computing alignments...  [33.866s]
Deallocating buffers...  [0.018s]
Loading trace points...  [0.059s]
Sorting trace points...  [1.379s]
Computing alignments...  [35.103s]
Deallocating buffers...  [0.015s]
Loading trace points...  [0.051s]
Sorting trace points...  [1.083s]
Computing alignments...  [36.568s]
Deallocating buffers...  [0.017s]
Loading trace points...  [0.111s]
Sorting trace points...  [1.546s]
Computing alignments...  [36.641s]
Deallocating buffers...  [0.212s]
Loading trace points...  [0.056s]
Sorting trace points...  [1.446s]
Computing alignments...  [36.597s]
Deallocating buffers...  [0.016s]
Loading trace points...  [0.076s]
Sorting trace points...  [1.531s]
Computing alignments...  [36.66s]
Deallocating buffers...  [0.02s]
Loading trace points...  [0.055s]
Sorting trace points...  [1.166s]
Computing alignments...  [36.68s]
Deallocating buffers...  [0.017s]
Loading trace points...  [0.088s]
Sorting trace points...  [1.456s]
Computing alignments...  [36.637s]
Deallocating buffers...  [0.016s]
Loading trace points...  [0s]
Sorting trace points...  [1.413s]
Computing alignments...  [36.204s]
Deallocating buffers...  [0.02s]
Loading trace points...  [0s]
 [597.82s]
Deallocating reference...  [0.06s]
Loading reference sequences...  [30.12s]
Masking reference...  [31.755s]
Initializing dictionary...  [0.077s]
Initializing temporary storage...  [0.007s]
Building reference histograms...  [32.262s]
Allocating buffers...  [0s]
Processing query block 1, reference block 10/14, shape 1/2, index chunk 1/4.
Building reference seed array...  [10.233s]
Building query seed array...  [2.182s]
Computing hash join...  [7.037s]
Masking low complexity seeds...  [0.274s]
Searching alignments...  [80.662s]
Deallocating memory...  [0s]
Processing query block 1, reference block 10/14, shape 1/2, index chunk 2/4.
Building reference seed array...  [13.413s]
Building query seed array...  [3.09s]
Computing hash join...  [6.833s]
Masking low complexity seeds...  [0.268s]
Searching alignments...  [52.2s]
Deallocating memory...  [0s]
Processing query block 1, reference block 10/14, shape 1/2, index chunk 3/4.
Building reference seed array...  [13.208s]
Building query seed array...  [2.918s]
Computing hash join...  [6.724s]
Masking low complexity seeds...  [0.305s]
Searching alignments...  [46.398s]
Deallocating memory...  [0s]
Processing query block 1, reference block 10/14, shape 1/2, index chunk 4/4.
Building reference seed array...  [11.209s]
Building query seed array...  [2.457s]
Computing hash join...  [7.181s]
Masking low complexity seeds...  [0.412s]
Searching alignments...  [41.875s]
Deallocating memory...  [0s]
Processing query block 1, reference block 10/14, shape 2/2, index chunk 1/4.
Building reference seed array...  [10.555s]
Building query seed array...  [2.043s]
Computing hash join...  [6.535s]
Masking low complexity seeds...  [0.254s]
Searching alignments...  [44.3s]
Deallocating memory...  [0s]
Processing query block 1, reference block 10/14, shape 2/2, index chunk 2/4.
Building reference seed array...  [12.501s]
Building query seed array...  [2.471s]
Computing hash join...  [6.373s]
Masking low complexity seeds...  [0.295s]
Searching alignments...  [34.009s]
Deallocating memory...  [0s]
Processing query block 1, reference block 10/14, shape 2/2, index chunk 3/4.
Building reference seed array...  [14.108s]
Building query seed array...  [2.539s]
Computing hash join...  [6.445s]
Masking low complexity seeds...  [0.261s]
Searching alignments...  [38.388s]
Deallocating memory...  [0s]
Processing query block 1, reference block 10/14, shape 2/2, index chunk 4/4.
Building reference seed array...  [10.478s]
Building query seed array...  [2.184s]
Computing hash join...  [6.427s]
Masking low complexity seeds...  [0.264s]
Searching alignments...  [32.134s]
Deallocating memory...  [0s]
Deallocating buffers...  [2.133s]
Clearing query masking...  [1.648s]
Opening temporary output file...  [0s]
Computing alignments... Loading trace points...  [6.98s]
Sorting trace points...  [1.436s]
Computing alignments...  [34.482s]
Deallocating buffers...  [0.019s]
Loading trace points...  [0.049s]
Sorting trace points...  [1.343s]
Computing alignments...  [34.658s]
Deallocating buffers...  [0.018s]
Loading trace points...  [0.056s]
Sorting trace points...  [1.174s]
Computing alignments...  [35.07s]
Deallocating buffers...  [0.018s]
Loading trace points...  [0.158s]
Sorting trace points...  [1.125s]
Computing alignments...  [34.234s]
Deallocating buffers...  [0.016s]
Loading trace points...  [0.082s]
Sorting trace points...  [1.219s]
Computing alignments...  [34.163s]
Deallocating buffers...  [0.016s]
Loading trace points...  [0.001s]
Sorting trace points...  [1.044s]
Computing alignments...  [33.787s]
Deallocating buffers...  [0.06s]
Loading trace points...  [0.001s]
Sorting trace points...  [1.163s]
Computing alignments...  [34.245s]
Deallocating buffers...  [0.015s]
Loading trace points...  [0.06s]
Sorting trace points...  [0.951s]
Computing alignments...  [33.601s]
Deallocating buffers...  [0.016s]
Loading trace points...  [0.052s]
Sorting trace points...  [1.345s]
Computing alignments...  [34.944s]
Deallocating buffers...  [0.032s]
Loading trace points...  [0.112s]
Sorting trace points...  [1.045s]
Computing alignments...  [36.261s]
Deallocating buffers...  [0.018s]
Loading trace points...  [0s]
Sorting trace points...  [1.446s]
Computing alignments...  [36.455s]
Deallocating buffers...  [0.064s]
Loading trace points...  [0.072s]
Sorting trace points...  [1.543s]
Computing alignments...  [36.517s]
Deallocating buffers...  [0.187s]
Loading trace points...  [0.061s]
Sorting trace points...  [1.404s]
Computing alignments...  [36.557s]
Deallocating buffers...  [0.019s]
Loading trace points...  [0.059s]
Sorting trace points...  [1.407s]
Computing alignments...  [36.596s]
Deallocating buffers...  [0.016s]
Loading trace points...  [0.102s]
Sorting trace points...  [1.436s]
Computing alignments...  [36.606s]
Deallocating buffers...  [0.016s]
Loading trace points...  [0s]
Sorting trace points...  [1.077s]
Computing alignments...  [36.307s]
Deallocating buffers...  [0.018s]
Loading trace points...  [0s]
 [593.243s]
Deallocating reference...  [0.056s]
Loading reference sequences...  [29.44s]
Masking reference...  [30.885s]
Initializing dictionary...  [0.077s]
Initializing temporary storage...  [0.006s]
Building reference histograms...  [32.943s]
Allocating buffers...  [0s]
Processing query block 1, reference block 11/14, shape 1/2, index chunk 1/4.
Building reference seed array...  [10.572s]
Building query seed array...  [2.104s]
Computing hash join...  [7.07s]
Masking low complexity seeds...  [0.273s]
Searching alignments...  [79.804s]
Deallocating memory...  [0s]
Processing query block 1, reference block 11/14, shape 1/2, index chunk 2/4.
Building reference seed array...  [13.083s]
Building query seed array...  [3.124s]
Computing hash join...  [7.06s]
Masking low complexity seeds...  [0.291s]
Searching alignments...  [53.355s]
Deallocating memory...  [0s]
Processing query block 1, reference block 11/14, shape 1/2, index chunk 3/4.
Building reference seed array...  [13.494s]
Building query seed array...  [2.863s]
Computing hash join...  [7.269s]
Masking low complexity seeds...  [0.273s]
Searching alignments...  [47.504s]
Deallocating memory...  [0s]
Processing query block 1, reference block 11/14, shape 1/2, index chunk 4/4.
Building reference seed array...  [10.33s]
Building query seed array...  [2.491s]
Computing hash join...  [6.631s]
Masking low complexity seeds...  [0.276s]
Searching alignments...  [41.401s]
Deallocating memory...  [0s]
Processing query block 1, reference block 11/14, shape 2/2, index chunk 1/4.
Building reference seed array...  [10.629s]
Building query seed array...  [2.124s]
Computing hash join...  [6.448s]
Masking low complexity seeds...  [0.303s]
Searching alignments...  [43.359s]
Deallocating memory...  [0s]
Processing query block 1, reference block 11/14, shape 2/2, index chunk 2/4.
Building reference seed array...  [12.838s]
Building query seed array...  [2.421s]
Computing hash join...  [6.987s]
Masking low complexity seeds...  [0.279s]
Searching alignments...  [33.625s]
Deallocating memory...  [0s]
Processing query block 1, reference block 11/14, shape 2/2, index chunk 3/4.
Building reference seed array...  [13.191s]
Building query seed array...  [2.645s]
Computing hash join...  [6.617s]
Masking low complexity seeds...  [0.33s]
Searching alignments...  [37.477s]
Deallocating memory...  [0s]
Processing query block 1, reference block 11/14, shape 2/2, index chunk 4/4.
Building reference seed array...  [10.449s]
Building query seed array...  [2.091s]
Computing hash join...  [6.467s]
Masking low complexity seeds...  [0.32s]
Searching alignments...  [31.617s]
Deallocating memory...  [0s]
Deallocating buffers...  [2.171s]
Clearing query masking...  [1.707s]
Opening temporary output file...  [0s]
Computing alignments... Loading trace points...  [7.039s]
Sorting trace points...  [1.415s]
Computing alignments...  [34.588s]
Deallocating buffers...  [0.016s]
Loading trace points...  [0.047s]
Sorting trace points...  [1.235s]
Computing alignments...  [35.274s]
Deallocating buffers...  [0.156s]
Loading trace points...  [0.071s]
Sorting trace points...  [1.411s]
Computing alignments...  [35.005s]
Deallocating buffers...  [0.015s]
Loading trace points...  [0s]
Sorting trace points...  [1.226s]
Computing alignments...  [34.157s]
Deallocating buffers...  [0.018s]
Loading trace points...  [0.072s]
Sorting trace points...  [1.332s]
Computing alignments...  [34.381s]
Deallocating buffers...  [0.015s]
Loading trace points...  [0.087s]
Sorting trace points...  [1.3s]
Computing alignments...  [33.97s]
Deallocating buffers...  [0.017s]
Loading trace points...  [0.064s]
Sorting trace points...  [1.326s]
Computing alignments...  [34.092s]
Deallocating buffers...  [0.014s]
Loading trace points...  [0.077s]
Sorting trace points...  [1.292s]
Computing alignments...  [33.561s]
Deallocating buffers...  [0.014s]
Loading trace points...  [0.109s]
Sorting trace points...  [1.15s]
Computing alignments...  [34.771s]
Deallocating buffers...  [0.016s]
Loading trace points...  [0.055s]
Sorting trace points...  [1.199s]
Computing alignments...  [36.101s]
Deallocating buffers...  [0.019s]
Loading trace points...  [0.056s]
Sorting trace points...  [1.227s]
Computing alignments...  [36.232s]
Deallocating buffers...  [0.017s]
Loading trace points...  [0.051s]
Sorting trace points...  [1.06s]
Computing alignments...  [36.349s]
Deallocating buffers...  [0.017s]
Loading trace points...  [0.121s]
Sorting trace points...  [1.34s]
Computing alignments...  [36.51s]
Deallocating buffers...  [0.016s]
Loading trace points...  [0.059s]
Sorting trace points...  [1.318s]
Computing alignments...  [36.463s]
Deallocating buffers...  [0.019s]
Loading trace points...  [0.061s]
Sorting trace points...  [1.377s]
Computing alignments...  [36.651s]
Deallocating buffers...  [0.016s]
Loading trace points...  [0s]
Sorting trace points...  [1.402s]
Computing alignments...  [36.116s]
Deallocating buffers...  [0.02s]
Loading trace points...  [0s]
 [593.344s]
Deallocating reference...  [0.065s]
Loading reference sequences...  [29.292s]
Masking reference...  [32.096s]
Initializing dictionary...  [0.079s]
Initializing temporary storage...  [0.005s]
Building reference histograms...  [32.863s]
Allocating buffers...  [0s]
Processing query block 1, reference block 12/14, shape 1/2, index chunk 1/4.
Building reference seed array...  [10.602s]
Building query seed array...  [2.186s]
Computing hash join...  [7.29s]
Masking low complexity seeds...  [0.276s]
Searching alignments...  [81.708s]
Deallocating memory...  [0s]
Processing query block 1, reference block 12/14, shape 1/2, index chunk 2/4.
Building reference seed array...  [13.273s]
Building query seed array...  [3.243s]
Computing hash join...  [7.038s]
Masking low complexity seeds...  [0.268s]
Searching alignments...  [53.182s]
Deallocating memory...  [0s]
Processing query block 1, reference block 12/14, shape 1/2, index chunk 3/4.
Building reference seed array...  [13.98s]
Building query seed array...  [2.934s]
Computing hash join...  [7.199s]
Masking low complexity seeds...  [0.265s]
Searching alignments...  [48.145s]
Deallocating memory...  [0s]
Processing query block 1, reference block 12/14, shape 1/2, index chunk 4/4.
Building reference seed array...  [10.834s]
Building query seed array...  [2.375s]
Computing hash join...  [6.647s]
Masking low complexity seeds...  [0.297s]
Searching alignments...  [43.189s]
Deallocating memory...  [0s]
Processing query block 1, reference block 12/14, shape 2/2, index chunk 1/4.
Building reference seed array...  [10.537s]
Building query seed array...  [2.133s]
Computing hash join...  [6.376s]
Masking low complexity seeds...  [0.307s]
Searching alignments...  [45.309s]
Deallocating memory...  [0s]
Processing query block 1, reference block 12/14, shape 2/2, index chunk 2/4.
Building reference seed array...  [12.99s]
Building query seed array...  [2.502s]
Computing hash join...  [7.023s]
Masking low complexity seeds...  [0.256s]
Searching alignments...  [35.244s]
Deallocating memory...  [0s]
Processing query block 1, reference block 12/14, shape 2/2, index chunk 3/4.
Building reference seed array...  [13.823s]
Building query seed array...  [2.646s]
Computing hash join...  [6.941s]
Masking low complexity seeds...  [0.262s]
Searching alignments...  [39.209s]
Deallocating memory...  [0s]
Processing query block 1, reference block 12/14, shape 2/2, index chunk 4/4.
Building reference seed array...  [10.502s]
Building query seed array...  [2.176s]
Computing hash join...  [6.932s]
Masking low complexity seeds...  [0.306s]
Searching alignments...  [31.87s]
Deallocating memory...  [0s]
Deallocating buffers...  [2.34s]
Clearing query masking...  [1.725s]
Opening temporary output file...  [0s]
Computing alignments... Loading trace points...  [7.079s]
Sorting trace points...  [1.409s]
Computing alignments...  [34.4s]
Deallocating buffers...  [0.018s]
Loading trace points...  [1.056s]
Sorting trace points...  [1.355s]
Computing alignments...  [34.534s]
Deallocating buffers...  [0.015s]
Loading trace points...  [0.055s]
Sorting trace points...  [1.539s]
Computing alignments...  [34.808s]
Deallocating buffers...  [0.114s]
Loading trace points...  [0.036s]
Sorting trace points...  [1.354s]
Computing alignments...  [34.188s]
Deallocating buffers...  [0.018s]
Loading trace points...  [0.056s]
Sorting trace points...  [1.371s]
Computing alignments...  [34.28s]
Deallocating buffers...  [0.041s]
Loading trace points...  [0.045s]
Sorting trace points...  [1.285s]
Computing alignments...  [33.827s]
Deallocating buffers...  [0.014s]
Loading trace points...  [0.043s]
Sorting trace points...  [1.053s]
Computing alignments...  [34.306s]
Deallocating buffers...  [0.017s]
Loading trace points...  [0.053s]
Sorting trace points...  [1.453s]
Computing alignments...  [33.677s]
Deallocating buffers...  [0.042s]
Loading trace points...  [0.041s]
Sorting trace points...  [1.325s]
Computing alignments...  [34.944s]
Deallocating buffers...  [0.016s]
Loading trace points...  [0.05s]
Sorting trace points...  [1.406s]
Computing alignments...  [36.332s]
Deallocating buffers...  [0.016s]
Loading trace points...  [0.002s]
Sorting trace points...  [1.073s]
Computing alignments...  [36.485s]
Deallocating buffers...  [0.018s]
Loading trace points...  [0.076s]
Sorting trace points...  [1.411s]
Computing alignments...  [36.383s]
Deallocating buffers...  [0.016s]
Loading trace points...  [0.06s]
Sorting trace points...  [1.464s]
Computing alignments...  [36.604s]
Deallocating buffers...  [0.02s]
Loading trace points...  [0.066s]
Sorting trace points...  [1.438s]
Computing alignments...  [36.609s]
Deallocating buffers...  [0.019s]
Loading trace points...  [0.1s]
Sorting trace points...  [1.442s]
Computing alignments...  [36.673s]
Deallocating buffers...  [0.016s]
Loading trace points...  [0s]
Sorting trace points...  [1.392s]
Computing alignments...  [36.326s]
Deallocating buffers...  [0.02s]
Loading trace points...  [0s]
 [595.583s]
Deallocating reference...  [0.068s]
Loading reference sequences...  [29.343s]
Masking reference...  [32.061s]
Initializing dictionary...  [0.077s]
Initializing temporary storage...  [0.006s]
Building reference histograms...  [31.851s]
Allocating buffers...  [0s]
Processing query block 1, reference block 13/14, shape 1/2, index chunk 1/4.
Building reference seed array...  [10.11s]
Building query seed array...  [2.185s]
Computing hash join...  [7.422s]
Masking low complexity seeds...  [0.469s]
Searching alignments...  [81.418s]
Deallocating memory...  [0s]
Processing query block 1, reference block 13/14, shape 1/2, index chunk 2/4.
Building reference seed array...  [12.67s]
Building query seed array...  [2.868s]
Computing hash join...  [6.738s]
Masking low complexity seeds...  [0.324s]
Searching alignments...  [53.833s]
Deallocating memory...  [0s]
Processing query block 1, reference block 13/14, shape 1/2, index chunk 3/4.
Building reference seed array...  [13.747s]
Building query seed array...  [3.066s]
Computing hash join...  [6.746s]
Masking low complexity seeds...  [0.321s]
Searching alignments...  [46.043s]
Deallocating memory...  [0s]
Processing query block 1, reference block 13/14, shape 1/2, index chunk 4/4.
Building reference seed array...  [10.868s]
Building query seed array...  [2.469s]
Computing hash join...  [7.039s]
Masking low complexity seeds...  [0.316s]
Searching alignments...  [41.885s]
Deallocating memory...  [0s]
Processing query block 1, reference block 13/14, shape 2/2, index chunk 1/4.
Building reference seed array...  [10.723s]
Building query seed array...  [2.14s]
Computing hash join...  [6.989s]
Masking low complexity seeds...  [0.375s]
Searching alignments...  [44.418s]
Deallocating memory...  [0s]
Processing query block 1, reference block 13/14, shape 2/2, index chunk 2/4.
Building reference seed array...  [12.975s]
Building query seed array...  [2.548s]
Computing hash join...  [6.269s]
Masking low complexity seeds...  [0.283s]
Searching alignments...  [34.237s]
Deallocating memory...  [0s]
Processing query block 1, reference block 13/14, shape 2/2, index chunk 3/4.
Building reference seed array...  [13.473s]
Building query seed array...  [2.563s]
Computing hash join...  [6.339s]
Masking low complexity seeds...  [0.271s]
Searching alignments...  [37.898s]
Deallocating memory...  [0s]
Processing query block 1, reference block 13/14, shape 2/2, index chunk 4/4.
Building reference seed array...  [10.996s]
Building query seed array...  [2.201s]
Computing hash join...  [6.528s]
Masking low complexity seeds...  [0.274s]
Searching alignments...  [32.299s]
Deallocating memory...  [0s]
Deallocating buffers...  [2.298s]
Clearing query masking...  [1.707s]
Opening temporary output file...  [0s]
Computing alignments... Loading trace points...  [7.363s]
Sorting trace points...  [1.421s]
Computing alignments...  [34.657s]
Deallocating buffers...  [0.015s]
Loading trace points...  [0.072s]
Sorting trace points...  [1.134s]
Computing alignments...  [34.905s]
Deallocating buffers...  [0.018s]
Loading trace points...  [0.047s]
Sorting trace points...  [1.036s]
Computing alignments...  [35.217s]
Deallocating buffers...  [0.017s]
Loading trace points...  [0.027s]
Sorting trace points...  [1.201s]
Computing alignments...  [34.314s]
Deallocating buffers...  [0.017s]
Loading trace points...  [0.093s]
Sorting trace points...  [1.452s]
Computing alignments...  [34.321s]
Deallocating buffers...  [0.172s]
Loading trace points...  [0.069s]
Sorting trace points...  [0.995s]
Computing alignments...  [33.875s]
Deallocating buffers...  [0.017s]
Loading trace points...  [0.112s]
Sorting trace points...  [1.319s]
Computing alignments...  [34.298s]
Deallocating buffers...  [0.015s]
Loading trace points...  [0.001s]
Sorting trace points...  [0.94s]
Computing alignments...  [33.717s]
Deallocating buffers...  [0.016s]
Loading trace points...  [0.001s]
Sorting trace points...  [1.011s]
Computing alignments...  [35.124s]
Deallocating buffers...  [0.017s]
Loading trace points...  [0.061s]
Sorting trace points...  [1.381s]
Computing alignments...  [36.286s]
Deallocating buffers...  [0.02s]
Loading trace points...  [0.206s]
Sorting trace points...  [1.132s]
Computing alignments...  [36.452s]
Deallocating buffers...  [0.017s]
Loading trace points...  [0.092s]
Sorting trace points...  [1.431s]
Computing alignments...  [36.433s]
Deallocating buffers...  [0.016s]
Loading trace points...  [0.04s]
Sorting trace points...  [1.425s]
Computing alignments...  [36.468s]
Deallocating buffers...  [0.016s]
Loading trace points...  [0.067s]
Sorting trace points...  [1.449s]
Computing alignments...  [36.501s]
Deallocating buffers...  [0.02s]
Loading trace points...  [0.131s]
Sorting trace points...  [1.606s]
Computing alignments...  [36.734s]
Deallocating buffers...  [0.33s]
Loading trace points...  [0s]
Sorting trace points...  [1.485s]
Computing alignments...  [36.268s]
Deallocating buffers...  [0.02s]
Loading trace points...  [0s]
 [595.311s]
Deallocating reference...  [0.064s]
Loading reference sequences...  [26.052s]
Masking reference...  [25.945s]
Initializing dictionary...  [0.063s]
Initializing temporary storage...  [0.006s]
Building reference histograms...  [25.895s]
Allocating buffers...  [0s]
Processing query block 1, reference block 14/14, shape 1/2, index chunk 1/4.
Building reference seed array...  [8.154s]
Building query seed array...  [2.144s]
Computing hash join...  [4.816s]
Masking low complexity seeds...  [0.263s]
Searching alignments...  [64.165s]
Deallocating memory...  [0s]
Processing query block 1, reference block 14/14, shape 1/2, index chunk 2/4.
Building reference seed array...  [10.651s]
Building query seed array...  [3.18s]
Computing hash join...  [4.954s]
Masking low complexity seeds...  [0.264s]
Searching alignments...  [45.091s]
Deallocating memory...  [0s]
Processing query block 1, reference block 14/14, shape 1/2, index chunk 3/4.
Building reference seed array...  [10.973s]
Building query seed array...  [2.742s]
Computing hash join...  [4.933s]
Masking low complexity seeds...  [0.265s]
Searching alignments...  [37.961s]
Deallocating memory...  [0s]
Processing query block 1, reference block 14/14, shape 1/2, index chunk 4/4.
Building reference seed array...  [8.832s]
Building query seed array...  [2.359s]
Computing hash join...  [4.902s]
Masking low complexity seeds...  [0.286s]
Searching alignments...  [35.041s]
Deallocating memory...  [0s]
Processing query block 1, reference block 14/14, shape 2/2, index chunk 1/4.
Building reference seed array...  [8.624s]
Building query seed array...  [2.148s]
Computing hash join...  [4.711s]
Masking low complexity seeds...  [0.263s]
Searching alignments...  [36.427s]
Deallocating memory...  [0s]
Processing query block 1, reference block 14/14, shape 2/2, index chunk 2/4.
Building reference seed array...  [10.659s]
Building query seed array...  [2.46s]
Computing hash join...  [4.809s]
Masking low complexity seeds...  [0.252s]
Searching alignments...  [27.643s]
Deallocating memory...  [0s]
Processing query block 1, reference block 14/14, shape 2/2, index chunk 3/4.
Building reference seed array...  [11.168s]
Building query seed array...  [2.61s]
Computing hash join...  [4.404s]
Masking low complexity seeds...  [0.269s]
Searching alignments...  [30.04s]
Deallocating memory...  [0s]
Processing query block 1, reference block 14/14, shape 2/2, index chunk 4/4.
Building reference seed array...  [8.656s]
Building query seed array...  [2.159s]
Computing hash join...  [5.015s]
Masking low complexity seeds...  [0.237s]
Searching alignments...  [26.111s]
Deallocating memory...  [0s]
Deallocating buffers...  [1.473s]
Clearing query masking...  [1.669s]
Opening temporary output file...  [0.001s]
Computing alignments... Loading trace points...  [11.182s]
Sorting trace points...  [2.398s]
Computing alignments...  [54.616s]
Deallocating buffers...  [0.03s]
Loading trace points...  [0.123s]
Sorting trace points...  [2.456s]
Computing alignments...  [54.859s]
Deallocating buffers...  [0.315s]
Loading trace points...  [0.139s]
Sorting trace points...  [2.228s]
Computing alignments...  [54.109s]
Deallocating buffers...  [0.029s]
Loading trace points...  [0.069s]
Sorting trace points...  [2.302s]
Computing alignments...  [53.778s]
Deallocating buffers...  [0.332s]
Loading trace points...  [0.062s]
Sorting trace points...  [1.179s]
Computing alignments...  [27.768s]
Deallocating buffers...  [0.013s]
Loading trace points...  [0.238s]
Sorting trace points...  [1.063s]
Computing alignments...  [28.838s]
Deallocating buffers...  [0.015s]
Loading trace points...  [0.001s]
Sorting trace points...  [0.898s]
Computing alignments...  [28.941s]
Deallocating buffers...  [0.015s]
Loading trace points...  [0.232s]
Sorting trace points...  [1.199s]
Computing alignments...  [28.93s]
Deallocating buffers...  [0.013s]
Loading trace points...  [0.056s]
Sorting trace points...  [1.115s]
Computing alignments...  [29.002s]
Deallocating buffers...  [0.013s]
Loading trace points...  [0.829s]
Sorting trace points...  [1.222s]
Computing alignments...  [29.084s]
Deallocating buffers...  [0.013s]
Loading trace points...  [0.061s]
Sorting trace points...  [1.166s]
Computing alignments...  [29.098s]
Deallocating buffers...  [0.016s]
Loading trace points...  [0s]
Sorting trace points...  [1.142s]
Computing alignments...  [28.765s]
Deallocating buffers...  [0.014s]
Loading trace points...  [0s]
 [480.197s]
Deallocating reference...  [0.046s]
Loading reference sequences...  [0.127s]
Deallocating buffers...  [0s]
Joining output blocks... Joining output blocks...  [2298.14s]
 [2298.14s]
Deallocating queries...  [0.084s]
Loading query sequences...  [0s]
Closing the input file...  [0s]
Closing the output file... Loading dictionary...  [3.808s]
 [5.056s]
Closing the database...  [0s]
Cleaning up...  [0s]
Total time = 19499.3s
Reported 2452217801 pairwise alignments, 2452217801 HSPs.
14316239 queries aligned.
DIAMOND BLASTx on /gscratch/srlab/sam/data/P_verrucosa/RNAseq/E9_R2.fastp-trim.20230215.fq.gz complete: E9_R2.blastx.meganized.daa

Now MEGANizing E9_R2.blastx.meganized.daa
Version   MEGAN Community Edition (version 6.22.0, built 19 Feb 2022)
Author(s) Daniel H. Huson
Copyright (C) 2022 Daniel H. Huson. This program comes with ABSOLUTELY NO WARRANTY.
Java version: 17.0.2
Functional classifications to use: EC, EGGNOG, GTDB, INTERPRO2GO, SEED
Loading ncbi.map: 2,396,736
Loading ncbi.tre: 2,396,740
Loading ec.map:     8,200
Loading ec.tre:     8,204
Loading eggnog.map:    30,875
Loading eggnog.tre:    30,986
Loading gtdb.map:   240,103
Loading gtdb.tre:   240,107
Loading interpro2go.map:    14,242
Loading interpro2go.tre:    28,907
Loading seed.map:       961
Loading seed.tre:       962
Meganizing: E9_R2.blastx.meganized.daa
Meganizing init
Annotating DAA file using FAST mode (accession database and first accession per line)
Annotating references
10% 20% 30% 40% 50% 60% 70% 100% (560.0s)
Writing
10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (1.3s)
Binning reads Initializing...
Initializing binning...
Using 'Naive LCA' algorithm for binning: Taxonomy
Using Best-Hit algorithm for binning: SEED
Using Best-Hit algorithm for binning: EGGNOG
Using 'Naive LCA' algorithm for binning: GTDB
Using Best-Hit algorithm for binning: EC
Using Best-Hit algorithm for binning: INTERPRO2GO
Binning reads...
Binning reads Analyzing alignments
10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (4,768.5s)
Total reads:       14,316,239
With hits:          14,316,239 
Alignments:      2,442,518,171
Assig. Taxonomy:    12,933,871
Assig. SEED:           129,568
Assig. EGGNOG:          59,612
Assig. GTDB:           392,902
Assig. EC:           2,452,130
Assig. INTERPRO2GO:  1,298,201
MinSupport set to: 7158
Binning reads Applying min-support & disabled filter to Taxonomy...
10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (0.3s)
Min-supp. changes:       4,145
Binning reads Applying min-support & disabled filter to GTDB...
10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (10.9s)
Min-supp. changes:       3,333
Binning reads Writing classification tables
10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (38.5s)
Binning reads Syncing
100% (0.4s)
Class. Taxonomy:            77
Class. SEED:               501
Class. EGGNOG:           1,744
Class. GTDB:                17
Class. EC:               2,359
Class. INTERPRO2GO:      7,836
Total time:  5,388s
Peak memory: 34.3 of 195.3G
MEGANization of E9_R2.blastx.meganized.daa completed.


Generating MD5 checksums for 20230221-pver-diamond-meganizer-E5_RNAseq.sh:
661f51d36215f8f0059dc94caed02b99  20230221-pver-diamond-meganizer-E5_RNAseq.sh


Generating MD5 checksums for C17_R1.blastx.meganized.daa:
be9b3c559ba723abe6788571adbfd474  C17_R1.blastx.meganized.daa


Generating MD5 checksums for C17_R2.blastx.meganized.daa:
8cf0e78112148e8c73e854ca510da445  C17_R2.blastx.meganized.daa


Generating MD5 checksums for C18_R1.blastx.meganized.daa:
2ef115e884ca0dd55d5088f8d007e80e  C18_R1.blastx.meganized.daa


Generating MD5 checksums for C18_R2.blastx.meganized.daa:
a9004484f55627760ab32446e8e32cf1  C18_R2.blastx.meganized.daa


Generating MD5 checksums for C19_R1.blastx.meganized.daa:
480d97311d1e9f3509a534f1272f2ce1  C19_R1.blastx.meganized.daa


Generating MD5 checksums for C19_R2.blastx.meganized.daa:
4537c13070fa9f2479f35593f4381687  C19_R2.blastx.meganized.daa


Generating MD5 checksums for C20_R1.blastx.meganized.daa:
67a1ffdd3a28eaea24842f9844e426e6  C20_R1.blastx.meganized.daa


Generating MD5 checksums for C20_R2.blastx.meganized.daa:
dbffe78b8726d2d2d8dde50295593096  C20_R2.blastx.meganized.daa


Generating MD5 checksums for C21_R1.blastx.meganized.daa:
ddff06097a72bfad996f09be4e8bd668  C21_R1.blastx.meganized.daa


Generating MD5 checksums for C21_R2.blastx.meganized.daa:
fb1d7031bf7516d901774294ac96134b  C21_R2.blastx.meganized.daa


Generating MD5 checksums for C22_R1.blastx.meganized.daa:
45dbfd94aaac899ece46395e93d55c8a  C22_R1.blastx.meganized.daa


Generating MD5 checksums for C22_R2.blastx.meganized.daa:
d703065dc3b7fcbe2b3dd69b652a576a  C22_R2.blastx.meganized.daa


Generating MD5 checksums for C23_R1.blastx.meganized.daa:
71d97580338e50ea290783ebdd0ba4ed  C23_R1.blastx.meganized.daa


Generating MD5 checksums for C23_R2.blastx.meganized.daa:
cac405cd7c9c5b10d0d212f38716c864  C23_R2.blastx.meganized.daa


Generating MD5 checksums for C24_R1.blastx.meganized.daa:
1706251787b6dbc59adce51f08660496  C24_R1.blastx.meganized.daa


Generating MD5 checksums for C24_R2.blastx.meganized.daa:
6106fd2e7cc2081e6597ba11e08f6ecb  C24_R2.blastx.meganized.daa


Generating MD5 checksums for C25_R1.blastx.meganized.daa:
057c4be22f10ebb38810fac5e3aa19f2  C25_R1.blastx.meganized.daa


Generating MD5 checksums for C25_R2.blastx.meganized.daa:
0c7b5cfbe71205136c5d9e4137598184  C25_R2.blastx.meganized.daa


Generating MD5 checksums for C26_R1.blastx.meganized.daa:
7e98d11e52626098ad87aad5724ab219  C26_R1.blastx.meganized.daa


Generating MD5 checksums for C26_R2.blastx.meganized.daa:
ac81a6312081c067b39edd62c7caccaa  C26_R2.blastx.meganized.daa


Generating MD5 checksums for C27_R1.blastx.meganized.daa:
6ab40680af6ac326ae0caf21becb4686  C27_R1.blastx.meganized.daa


Generating MD5 checksums for C27_R2.blastx.meganized.daa:
516659fce2b18cdf85c69c4d535a5fb4  C27_R2.blastx.meganized.daa


Generating MD5 checksums for C28_R1.blastx.meganized.daa:
905b9c8ed40079b02ceaa10a9ad13b11  C28_R1.blastx.meganized.daa


Generating MD5 checksums for C28_R2.blastx.meganized.daa:
7a873065b8811a3c1d30d77687babb97  C28_R2.blastx.meganized.daa


Generating MD5 checksums for C29_R1.blastx.meganized.daa:
5d3f5a59e15fc938da9b1d4494006100  C29_R1.blastx.meganized.daa


Generating MD5 checksums for C29_R2.blastx.meganized.daa:
4af338f349ab57eb89dee4c61ad02157  C29_R2.blastx.meganized.daa


Generating MD5 checksums for C30_R1.blastx.meganized.daa:
4dc54e030b94a138a278a203e835306a  C30_R1.blastx.meganized.daa


Generating MD5 checksums for C30_R2.blastx.meganized.daa:
93d0d816312f3741bd237daa725af7e2  C30_R2.blastx.meganized.daa


Generating MD5 checksums for C31_R1.blastx.meganized.daa:
ff20b2a788e2d2026aab9d4cc230ea0b  C31_R1.blastx.meganized.daa


Generating MD5 checksums for C31_R2.blastx.meganized.daa:
97b3b2610007664592d896afe54faf9c  C31_R2.blastx.meganized.daa


Generating MD5 checksums for C32_R1.blastx.meganized.daa:
2ddca606834c351e2d8d1c518b168862  C32_R1.blastx.meganized.daa


Generating MD5 checksums for C32_R2.blastx.meganized.daa:
6c9ecf752eea45b39567b38a9891d08d  C32_R2.blastx.meganized.daa


Generating MD5 checksums for E10_R1.blastx.meganized.daa:
dce1c1592422a24060cd7ec687bbe979  E10_R1.blastx.meganized.daa


Generating MD5 checksums for E10_R2.blastx.meganized.daa:
7895c253564959372c893691a65b06ad  E10_R2.blastx.meganized.daa


Generating MD5 checksums for E12_R1.blastx.meganized.daa:
358595b80994e5d69eec7c8526cfbaa9  E12_R1.blastx.meganized.daa


Generating MD5 checksums for E12_R2.blastx.meganized.daa:
ceca96ac43676836cce3e0d4665cd72e  E12_R2.blastx.meganized.daa


Generating MD5 checksums for E13_R1.blastx.meganized.daa:
9f821a77046c85d49da52a63645ee21b  E13_R1.blastx.meganized.daa


Generating MD5 checksums for E13_R2.blastx.meganized.daa:
838b573c1bba5a09f4dae0d0f9dd6e47  E13_R2.blastx.meganized.daa


Generating MD5 checksums for E14_R1.blastx.meganized.daa:
08fb7bc876db3b6931ffc418ae13e340  E14_R1.blastx.meganized.daa


Generating MD5 checksums for E14_R2.blastx.meganized.daa:
2debfdd94dab304b8f9c868cb6c69e3c  E14_R2.blastx.meganized.daa


Generating MD5 checksums for E15_R1.blastx.meganized.daa:
9f435164fe31f58938c85c1623a6bf7b  E15_R1.blastx.meganized.daa


Generating MD5 checksums for E15_R2.blastx.meganized.daa:
dbde35c6da30e434d9926198c282faa1  E15_R2.blastx.meganized.daa


Generating MD5 checksums for E16_R1.blastx.meganized.daa:
34ad5152843e3ee8b319c920e5a19646  E16_R1.blastx.meganized.daa


Generating MD5 checksums for E16_R2.blastx.meganized.daa:
336599bb1e3e62dafed617a12e596942  E16_R2.blastx.meganized.daa


Generating MD5 checksums for E1_R1.blastx.meganized.daa:
e3c45073f599b0b9ae61e791a80491b8  E1_R1.blastx.meganized.daa


Generating MD5 checksums for E1_R2.blastx.meganized.daa:
d767d0f450f2f7f3b5a5b57b5bb7cf08  E1_R2.blastx.meganized.daa


Generating MD5 checksums for E2_R1.blastx.meganized.daa:
dcd6cae85765bf0826edca36eadfc336  E2_R1.blastx.meganized.daa


Generating MD5 checksums for E2_R2.blastx.meganized.daa:
6ac3437b42d007224d6f03de3b5247ee  E2_R2.blastx.meganized.daa


Generating MD5 checksums for E3_R1.blastx.meganized.daa:
d84a9308792ebdae52cee5ab3094be68  E3_R1.blastx.meganized.daa


Generating MD5 checksums for E3_R2.blastx.meganized.daa:
d5dfec54bb56af0c0f9f86821e35c2e7  E3_R2.blastx.meganized.daa


Generating MD5 checksums for E4_R1.blastx.meganized.daa:
41502debf9a6d4618cbbebb076ab833e  E4_R1.blastx.meganized.daa


Generating MD5 checksums for E4_R2.blastx.meganized.daa:
e3fc7b190daf7e607a13a0a27f0bb7a2  E4_R2.blastx.meganized.daa


Generating MD5 checksums for E5_R1.blastx.meganized.daa:
713752d87b09ad72c43afeea378530bc  E5_R1.blastx.meganized.daa


Generating MD5 checksums for E5_R2.blastx.meganized.daa:
657f1f8ada0d3c411a2556c16b713b24  E5_R2.blastx.meganized.daa


Generating MD5 checksums for E6_R1.blastx.meganized.daa:
404ba9d64db6639d202d3960c1ad9c02  E6_R1.blastx.meganized.daa


Generating MD5 checksums for E6_R2.blastx.meganized.daa:
6a74ab0c0e8eb866b4eec56dfde948e1  E6_R2.blastx.meganized.daa


Generating MD5 checksums for E7_R1.blastx.meganized.daa:
314dc6e70fca57d3cfe14a33ffdd72a1  E7_R1.blastx.meganized.daa


Generating MD5 checksums for E7_R2.blastx.meganized.daa:
85279fb94656f1f6f8fbc880f9f62026  E7_R2.blastx.meganized.daa


Generating MD5 checksums for E8_R1.blastx.meganized.daa:
85ac6332ee4777a1b307cb83ce2c1974  E8_R1.blastx.meganized.daa


Generating MD5 checksums for E8_R2.blastx.meganized.daa:
1e285d6d06f3cff942a7c53099f93113  E8_R2.blastx.meganized.daa


Generating MD5 checksums for E9_R1.blastx.meganized.daa:
e911058c6af6e360d8f82c4432d35f48  E9_R1.blastx.meganized.daa


Generating MD5 checksums for E9_R2.blastx.meganized.daa:
ed219f906c7a3ef7c7cc2ddeb665439a  E9_R2.blastx.meganized.daa


Generating MD5 checksums for input_fastqs-checksums.md5:
2e3b5a3c9e01f519a995af8a47b63473  input_fastqs-checksums.md5


Generating MD5 checksums for slurm-4474442.out:
05bb306f06ad76ff4e97027c5f663c8c  slurm-4474442.out


Generating MD5 checksums for slurm-4499309.out:
4e76d8b293ffeab4ec5ddc188c138a13  slurm-4499309.out


Generating MD5 checksums for slurm-4501424.out:
0247f27197ff4a93c2dd03f94a64202a  slurm-4501424.out


Generating MD5 checksums for slurm-4510134.out:
d53b023b5ac91593e35cb0ed673c5227  slurm-4510134.out

Logging program options...
Finished logging programs options.

Logging system /gscratch/sw/intel-201703/compilers_and_libraries_2017.2.174/linux/mpi/intel64/bin:/gscratch/sw/intel-201703/compilers_and_libraries_2017.2.174/linux/bin/intel64:/gscratch/sw/intel-201703/debugger_2017/gdb/intel64_mic/bin:/sw/intel-python-2017.2.045/intelpython3/bin:/gscratch/srlab/programs/anaconda3/condabin:/usr/lusers/samwhite/bin:/gscratch/srlab/programs/cmake-3.12.1/bin:/usr/lusers/samwhite/perl5/bin:/sw/local/bin:/usr/lib64/qt-3.3/bin:/sw/modules-1.775/bin:/usr/lpp/mmfs/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin:/gscratch/srlab/programs/bowtie2-2.3.5.1-linux-x86_64:/gscratch/srlab/programs/Augustus-3.3.2/bin:/gscratch/srlab/programs/FastQC:/gscratch/srlab/programs/jellyfish-2.3.0/bin:/gscratch/srlab/programs/salmon-1.1.0_linux_x86_64/bin:/gscratch/srlab/programs/samtools-1.10:/gscratch/srlab/programs/pcre2-10.37:/gscratch/srlab/programs/R-4.1.1/bin:/gscratch/srlab/programs/tree-1.8.0:/gscratch/srlab/programs/graphviz-2.40.1/bin:/usr/lusers/samwhite/bin:/usr/lusers/samwhite/edirect...
Finished logging system /gscratch/sw/intel-201703/compilers_and_libraries_2017.2.174/linux/mpi/intel64/bin:/gscratch/sw/intel-201703/compilers_and_libraries_2017.2.174/linux/bin/intel64:/gscratch/sw/intel-201703/debugger_2017/gdb/intel64_mic/bin:/sw/intel-python-2017.2.045/intelpython3/bin:/gscratch/srlab/programs/anaconda3/condabin:/usr/lusers/samwhite/bin:/gscratch/srlab/programs/cmake-3.12.1/bin:/usr/lusers/samwhite/perl5/bin:/sw/local/bin:/usr/lib64/qt-3.3/bin:/sw/modules-1.775/bin:/usr/lpp/mmfs/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin:/gscratch/srlab/programs/bowtie2-2.3.5.1-linux-x86_64:/gscratch/srlab/programs/Augustus-3.3.2/bin:/gscratch/srlab/programs/FastQC:/gscratch/srlab/programs/jellyfish-2.3.0/bin:/gscratch/srlab/programs/salmon-1.1.0_linux_x86_64/bin:/gscratch/srlab/programs/samtools-1.10:/gscratch/srlab/programs/pcre2-10.37:/gscratch/srlab/programs/R-4.1.1/bin:/gscratch/srlab/programs/tree-1.8.0:/gscratch/srlab/programs/graphviz-2.40.1/bin:/usr/lusers/samwhite/bin:/usr/lusers/samwhite/edirect.