Generating MD5 checksum for /gscratch/srlab/sam/data/P_verrucosa/RNAseq/E1_R1.fastp-trim.20230215.fq.gz... 961470362e124996b63bef1bc48a8a6c /gscratch/srlab/sam/data/P_verrucosa/RNAseq/E1_R1.fastp-trim.20230215.fq.gz Running DIAMOND BLASTx on /gscratch/srlab/sam/data/P_verrucosa/RNAseq/E1_R1.fastp-trim.20230215.fq.gz. diamond v2.1.1.155 (C) Max Planck Society for the Advancement of Science Documentation, support and updates available at http://www.diamondsearch.org Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021) #CPU threads: 40 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: Percentage range of top alignment score to report hits: 5 Opening the database... [0.299s] Database: /gscratch/srlab/blastdbs/20230215-ncbi-nr/20230215-ncbi-nr.dmnd (type: Diamond database, sequences: 526308523, letters: 207134680681) Block size = 15000000000 Opening the input file... [0.696s] Opening the output file... [0.917s] Loading query sequences... [77.846s] Masking queries... [19.742s] Algorithm: Double-indexed Building query histograms... [21.499s] Loading reference sequences... [29.343s] Masking reference... [30.869s] Initializing dictionary... [0.08s] Initializing temporary storage... [0.007s] Building reference histograms... [33.839s] Allocating buffers... [0s] Processing query block 1, reference block 1/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.649s] Building query seed array... [2.203s] Computing hash join... [6.807s] Masking low complexity seeds... [0.48s] Searching alignments... [86.743s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 1/2, index chunk 2/4. Building reference seed array... [13.177s] Building query seed array... [2.927s] Computing hash join... [6.027s] Masking low complexity seeds... [0.232s] Searching alignments... [58.995s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.851s] Building query seed array... [2.963s] Computing hash join... [6.379s] Masking low complexity seeds... [0.309s] Searching alignments... [47.882s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.921s] Building query seed array... [2.376s] Computing hash join... [5.719s] Masking low complexity seeds... [0.249s] Searching alignments... [41.561s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.577s] Building query seed array... [2.122s] Computing hash join... [5.657s] Masking low complexity seeds... [0.223s] Searching alignments... [43.384s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.889s] Building query seed array... [2.448s] Computing hash join... [6.08s] Masking low complexity seeds... [0.257s] Searching alignments... [33.483s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.665s] Building query seed array... [2.454s] Computing hash join... [5.665s] Masking low complexity seeds... [0.218s] Searching alignments... [38.528s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.474s] Building query seed array... [2.249s] Computing hash join... [5.978s] Masking low complexity seeds... [0.22s] Searching alignments... [33.117s] Deallocating memory... [0s] Deallocating buffers... [2.034s] Clearing query masking... [1.659s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [6.481s] Sorting trace points... [1.343s] Computing alignments... [31.905s] Deallocating buffers... [0.016s] Loading trace points... [0.051s] Sorting trace points... [1.161s] Computing alignments... [31.524s] Deallocating buffers... [0.137s] Loading trace points... [0.061s] Sorting trace points... [1.176s] Computing alignments... [31.834s] Deallocating buffers... [0.017s] Loading trace points... [0.065s] Sorting trace points... [1.214s] Computing alignments... [31.499s] Deallocating buffers... [0.017s] Loading trace points... [0.064s] Sorting trace points... [1.213s] Computing alignments... [31.146s] Deallocating buffers... [0.017s] Loading trace points... [0.063s] Sorting trace points... [0.853s] Computing alignments... [31.519s] Deallocating buffers... [0.015s] Loading trace points... [0.054s] Sorting trace points... [1.207s] Computing alignments... [31.709s] Deallocating buffers... [0.017s] Loading trace points... [0.079s] Sorting trace points... [1.195s] Computing alignments... [31.346s] Deallocating buffers... [0.014s] Loading trace points... [0.067s] Sorting trace points... [1.179s] Computing alignments... [32.391s] Deallocating buffers... [0.015s] Loading trace points... [0.046s] Sorting trace points... [1.142s] Computing alignments... [33.152s] Deallocating buffers... [0.018s] Loading trace points... [0.464s] Sorting trace points... [1.324s] Computing alignments... [33.219s] Deallocating buffers... [0.015s] Loading trace points... [0.049s] Sorting trace points... [1.265s] Computing alignments... [33.359s] Deallocating buffers... [0.018s] Loading trace points... [0.064s] Sorting trace points... [1.171s] Computing alignments... [33.373s] Deallocating buffers... [0.015s] Loading trace points... [0.066s] Sorting trace points... [1.313s] Computing alignments... [33.366s] Deallocating buffers... [0.015s] Loading trace points... [0.042s] Sorting trace points... [1.287s] Computing alignments... [33.281s] Deallocating buffers... [0.018s] Loading trace points... [0s] Sorting trace points... [0.977s] Computing alignments... [33.151s] Deallocating buffers... [0.016s] Loading trace points... [0s] [545.048s] Deallocating reference... [0.058s] Loading reference sequences... [29.886s] Masking reference... [30.949s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.007s] Building reference histograms... [33.247s] Allocating buffers... [0s] Processing query block 1, reference block 2/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.289s] Building query seed array... [2.133s] Computing hash join... [6.436s] Masking low complexity seeds... [0.451s] Searching alignments... [84.251s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 1/2, index chunk 2/4. Building reference seed array... [13.501s] Building query seed array... [2.887s] Computing hash join... [5.901s] Masking low complexity seeds... [0.248s] Searching alignments... [59.507s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.708s] Building query seed array... [2.868s] Computing hash join... [5.813s] Masking low complexity seeds... [0.262s] Searching alignments... [47.386s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.887s] Building query seed array... [2.397s] Computing hash join... [6.359s] Masking low complexity seeds... [0.319s] Searching alignments... [41.017s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.724s] Building query seed array... [2.07s] Computing hash join... [5.787s] Masking low complexity seeds... [0.219s] Searching alignments... [44.098s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.845s] Building query seed array... [2.498s] Computing hash join... [5.665s] Masking low complexity seeds... [0.251s] Searching alignments... [34.329s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.654s] Building query seed array... [2.584s] Computing hash join... [5.572s] Masking low complexity seeds... [0.24s] Searching alignments... [37.346s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.419s] Building query seed array... [2.078s] Computing hash join... [5.594s] Masking low complexity seeds... [0.242s] Searching alignments... [32.003s] Deallocating memory... [0s] Deallocating buffers... [2.133s] Clearing query masking... [1.669s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [6.503s] Sorting trace points... [1.297s] Computing alignments... [31.648s] Deallocating buffers... [0.016s] Loading trace points... [0.085s] Sorting trace points... [1.217s] Computing alignments... [31.25s] Deallocating buffers... [0.014s] Loading trace points... [0.057s] Sorting trace points... [1.131s] Computing alignments... [31.756s] Deallocating buffers... [0.017s] Loading trace points... [0.068s] Sorting trace points... [1.223s] Computing alignments... [31.325s] Deallocating buffers... [0.017s] Loading trace points... [0.073s] Sorting trace points... [1.189s] Computing alignments... [31.197s] Deallocating buffers... [0.013s] Loading trace points... [0.061s] Sorting trace points... [1.06s] Computing alignments... [31.285s] Deallocating buffers... [0.014s] Loading trace points... [0.06s] Sorting trace points... [1.24s] Computing alignments... [31.454s] Deallocating buffers... [0.017s] Loading trace points... [0.099s] Sorting trace points... [1.223s] Computing alignments... [31.247s] Deallocating buffers... [0.014s] Loading trace points... [0.072s] Sorting trace points... [1.163s] Computing alignments... [32.295s] Deallocating buffers... [0.017s] Loading trace points... [0.001s] Sorting trace points... [1.278s] Computing alignments... [33.03s] Deallocating buffers... [0.015s] Loading trace points... [0s] Sorting trace points... [1.256s] Computing alignments... [33.142s] Deallocating buffers... [0.018s] Loading trace points... [0.068s] Sorting trace points... [1.318s] Computing alignments... [33.061s] Deallocating buffers... [0.018s] Loading trace points... [0.039s] Sorting trace points... [1.274s] Computing alignments... [33.207s] Deallocating buffers... [0.014s] Loading trace points... [0.061s] Sorting trace points... [0.998s] Computing alignments... [33.072s] Deallocating buffers... [0.017s] Loading trace points... [0.047s] Sorting trace points... [1.149s] Computing alignments... [33.228s] Deallocating buffers... [0.015s] Loading trace points... [0s] Sorting trace points... [1.182s] Computing alignments... [32.999s] Deallocating buffers... [0.017s] Loading trace points... [0s] [542.118s] Deallocating reference... [0.06s] Loading reference sequences... [30.776s] Masking reference... [30.966s] Initializing dictionary... [0.077s] Initializing temporary storage... [0.006s] Building reference histograms... [32.988s] Allocating buffers... [0.001s] Processing query block 1, reference block 3/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.624s] Building query seed array... [2.155s] Computing hash join... [6.364s] Masking low complexity seeds... [0.236s] Searching alignments... [90.018s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.185s] Building query seed array... [2.79s] Computing hash join... [6.415s] Masking low complexity seeds... [0.25s] Searching alignments... [60.307s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.871s] Building query seed array... [2.711s] Computing hash join... [7.198s] Masking low complexity seeds... [0.228s] Searching alignments... [47.466s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.544s] Building query seed array... [2.304s] Computing hash join... [6.728s] Masking low complexity seeds... [0.215s] Searching alignments... [42.768s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.389s] Building query seed array... [2.053s] Computing hash join... [6.41s] Masking low complexity seeds... [0.221s] Searching alignments... [42.182s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.682s] Building query seed array... [2.397s] Computing hash join... [6.931s] Masking low complexity seeds... [0.226s] Searching alignments... [33.617s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.595s] Building query seed array... [2.498s] Computing hash join... [6.806s] Masking low complexity seeds... [0.224s] Searching alignments... [38.485s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.836s] Building query seed array... [2.179s] Computing hash join... [6.927s] Masking low complexity seeds... [0.223s] Searching alignments... [32.459s] Deallocating memory... [0s] Deallocating buffers... [1.728s] Clearing query masking... [1.699s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [6.465s] Sorting trace points... [1.308s] Computing alignments... [31.62s] Deallocating buffers... [0.015s] Loading trace points... [0.061s] Sorting trace points... [1.07s] Computing alignments... [31.217s] Deallocating buffers... [0.017s] Loading trace points... [0.084s] Sorting trace points... [1.234s] Computing alignments... [31.639s] Deallocating buffers... [0.017s] Loading trace points... [0.067s] Sorting trace points... [1.371s] Computing alignments... [31.559s] Deallocating buffers... [0.098s] Loading trace points... [0.061s] Sorting trace points... [0.884s] Computing alignments... [30.929s] Deallocating buffers... [0.015s] Loading trace points... [0.081s] Sorting trace points... [1.204s] Computing alignments... [31.336s] Deallocating buffers... [0.017s] Loading trace points... [0.076s] Sorting trace points... [1.269s] Computing alignments... [31.611s] Deallocating buffers... [0.017s] Loading trace points... [0.081s] Sorting trace points... [1.205s] Computing alignments... [31.249s] Deallocating buffers... [0.017s] Loading trace points... [0.128s] Sorting trace points... [1.277s] Computing alignments... [32.277s] Deallocating buffers... [0.014s] Loading trace points... [0.066s] Sorting trace points... [1.322s] Computing alignments... [33.086s] Deallocating buffers... [0.015s] Loading trace points... [0.05s] Sorting trace points... [1.191s] Computing alignments... [33.038s] Deallocating buffers... [0.015s] Loading trace points... [0.049s] Sorting trace points... [1.333s] Computing alignments... [33.132s] Deallocating buffers... [0.09s] Loading trace points... [0.039s] Sorting trace points... [1.281s] Computing alignments... [33.132s] Deallocating buffers... [0.017s] Loading trace points... [0.056s] Sorting trace points... [1.27s] Computing alignments... [33.137s] Deallocating buffers... [0.015s] Loading trace points... [0.059s] Sorting trace points... [0.998s] Computing alignments... [33.197s] Deallocating buffers... [0.017s] Loading trace points... [0s] Sorting trace points... [1.367s] Computing alignments... [33.048s] Deallocating buffers... [0.103s] Loading trace points... [0s] [542.883s] Deallocating reference... [0.055s] Loading reference sequences... [29.506s] Masking reference... [30.955s] Initializing dictionary... [0.077s] Initializing temporary storage... [0.007s] Building reference histograms... [33.235s] Allocating buffers... [0.001s] Processing query block 1, reference block 4/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.258s] Building query seed array... [2.195s] Computing hash join... [6.777s] Masking low complexity seeds... [0.562s] Searching alignments... [85.053s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.805s] Building query seed array... [2.895s] Computing hash join... [6.581s] Masking low complexity seeds... [0.23s] Searching alignments... [59.89s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 1/2, index chunk 3/4. Building reference seed array... [14.018s] Building query seed array... [2.991s] Computing hash join... [7.11s] Masking low complexity seeds... [0.23s] Searching alignments... [45.919s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.243s] Building query seed array... [2.367s] Computing hash join... [6.693s] Masking low complexity seeds... [0.217s] Searching alignments... [40.134s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.11s] Building query seed array... [2.081s] Computing hash join... [6.552s] Masking low complexity seeds... [0.208s] Searching alignments... [44.373s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.988s] Building query seed array... [2.52s] Computing hash join... [6.843s] Masking low complexity seeds... [0.231s] Searching alignments... [33.555s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.641s] Building query seed array... [2.617s] Computing hash join... [6.791s] Masking low complexity seeds... [0.243s] Searching alignments... [37.209s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.213s] Building query seed array... [2.058s] Computing hash join... [6.493s] Masking low complexity seeds... [0.245s] Searching alignments... [31.62s] Deallocating memory... [0s] Deallocating buffers... [1.741s] Clearing query masking... [1.694s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [6.522s] Sorting trace points... [1.308s] Computing alignments... [31.682s] Deallocating buffers... [0.014s] Loading trace points... [0.064s] Sorting trace points... [1.257s] Computing alignments... [31.354s] Deallocating buffers... [0.014s] Loading trace points... [0.073s] Sorting trace points... [0.985s] Computing alignments... [31.705s] Deallocating buffers... [0.016s] Loading trace points... [0.069s] Sorting trace points... [1.228s] Computing alignments... [31.436s] Deallocating buffers... [0.017s] Loading trace points... [0.061s] Sorting trace points... [1.189s] Computing alignments... [30.998s] Deallocating buffers... [0.013s] Loading trace points... [0.063s] Sorting trace points... [1.207s] Computing alignments... [31.366s] Deallocating buffers... [0.014s] Loading trace points... [0.055s] Sorting trace points... [1.209s] Computing alignments... [31.469s] Deallocating buffers... [0.017s] Loading trace points... [0.073s] Sorting trace points... [1.157s] Computing alignments... [31.261s] Deallocating buffers... [0.014s] Loading trace points... [0.064s] Sorting trace points... [1.22s] Computing alignments... [32.229s] Deallocating buffers... [0.017s] Loading trace points... [0.079s] Sorting trace points... [1.298s] Computing alignments... [32.942s] Deallocating buffers... [0.015s] Loading trace points... [0.059s] Sorting trace points... [1.113s] Computing alignments... [33.048s] Deallocating buffers... [0.016s] Loading trace points... [0.035s] Sorting trace points... [1.319s] Computing alignments... [33.084s] Deallocating buffers... [0.018s] Loading trace points... [0.058s] Sorting trace points... [1.297s] Computing alignments... [33.159s] Deallocating buffers... [0.015s] Loading trace points... [0.075s] Sorting trace points... [1.316s] Computing alignments... [33.189s] Deallocating buffers... [0.015s] Loading trace points... [0.049s] Sorting trace points... [1.316s] Computing alignments... [33.343s] Deallocating buffers... [0.017s] Loading trace points... [0s] Sorting trace points... [1.292s] Computing alignments... [32.973s] Deallocating buffers... [0.018s] Loading trace points... [0s] [542.788s] Deallocating reference... [0.055s] Loading reference sequences... [31.981s] Masking reference... [30.966s] Initializing dictionary... [0.077s] Initializing temporary storage... [0.007s] Building reference histograms... [32.88s] Allocating buffers... [0s] Processing query block 1, reference block 5/14, shape 1/2, index chunk 1/4. Building reference seed array... [9.983s] Building query seed array... [2.13s] Computing hash join... [7.205s] Masking low complexity seeds... [0.557s] Searching alignments... [85.531s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 1/2, index chunk 2/4. Building reference seed array... [13.081s] Building query seed array... [3.109s] Computing hash join... [6.656s] Masking low complexity seeds... [0.221s] Searching alignments... [60.317s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 1/2, index chunk 3/4. Building reference seed array... [14.073s] Building query seed array... [2.755s] Computing hash join... [7.167s] Masking low complexity seeds... [0.234s] Searching alignments... [45.198s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.264s] Building query seed array... [2.4s] Computing hash join... [7.476s] Masking low complexity seeds... [0.219s] Searching alignments... [39.631s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.757s] Building query seed array... [2.264s] Computing hash join... [6.568s] Masking low complexity seeds... [0.216s] Searching alignments... [42.237s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.901s] Building query seed array... [2.545s] Computing hash join... [6.444s] Masking low complexity seeds... [0.239s] Searching alignments... [32.667s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.307s] Building query seed array... [2.573s] Computing hash join... [6.622s] Masking low complexity seeds... [0.228s] Searching alignments... [37.003s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.333s] Building query seed array... [2.215s] Computing hash join... [6.455s] Masking low complexity seeds... [0.213s] Searching alignments... [31.837s] Deallocating memory... [0s] Deallocating buffers... [1.882s] Clearing query masking... [1.692s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [6.641s] Sorting trace points... [1.316s] Computing alignments... [31.534s] Deallocating buffers... [0.017s] Loading trace points... [0s] Sorting trace points... [0.91s] Computing alignments... [31.318s] Deallocating buffers... [0.015s] Loading trace points... [0.065s] Sorting trace points... [1.195s] Computing alignments... [31.714s] Deallocating buffers... [0.017s] Loading trace points... [0.069s] Sorting trace points... [1.195s] Computing alignments... [31.266s] Deallocating buffers... [0.017s] Loading trace points... [0.065s] Sorting trace points... [1.178s] Computing alignments... [30.845s] Deallocating buffers... [0.013s] Loading trace points... [0.103s] Sorting trace points... [1.213s] Computing alignments... [31.215s] Deallocating buffers... [0.014s] Loading trace points... [0.048s] Sorting trace points... [1.19s] Computing alignments... [31.426s] Deallocating buffers... [0.014s] Loading trace points... [0.086s] Sorting trace points... [1.004s] Computing alignments... [31.085s] Deallocating buffers... [0.016s] Loading trace points... [0.089s] Sorting trace points... [1.26s] Computing alignments... [32.065s] Deallocating buffers... [0.017s] Loading trace points... [0.043s] Sorting trace points... [1.288s] Computing alignments... [32.966s] Deallocating buffers... [0.097s] Loading trace points... [0.001s] Sorting trace points... [1.269s] Computing alignments... [32.923s] Deallocating buffers... [0.018s] Loading trace points... [0.002s] Sorting trace points... [1.328s] Computing alignments... [32.975s] Deallocating buffers... [0.015s] Loading trace points... [0.054s] Sorting trace points... [1.097s] Computing alignments... [32.923s] Deallocating buffers... [0.017s] Loading trace points... [0.096s] Sorting trace points... [1.299s] Computing alignments... [32.896s] Deallocating buffers... [0.015s] Loading trace points... [0.049s] Sorting trace points... [1.139s] Computing alignments... [33.026s] Deallocating buffers... [0.017s] Loading trace points... [0s] Sorting trace points... [1.099s] Computing alignments... [32.807s] Deallocating buffers... [0.079s] Loading trace points... [0s] [540.032s] Deallocating reference... [0.057s] Loading reference sequences... [35.102s] Masking reference... [30.923s] Initializing dictionary... [0.077s] Initializing temporary storage... [0.007s] Building reference histograms... [33.226s] Allocating buffers... [0s] Processing query block 1, reference block 6/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.215s] Building query seed array... [2.239s] Computing hash join... [7.084s] Masking low complexity seeds... [0.231s] Searching alignments... [82.209s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.833s] Building query seed array... [3.176s] Computing hash join... [6.56s] Masking low complexity seeds... [0.259s] Searching alignments... [57.547s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 1/2, index chunk 3/4. Building reference seed array... [14.229s] Building query seed array... [2.827s] Computing hash join... [7.214s] Masking low complexity seeds... [0.24s] Searching alignments... [46.587s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.478s] Building query seed array... [2.407s] Computing hash join... [7.001s] Masking low complexity seeds... [0.282s] Searching alignments... [39.718s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.441s] Building query seed array... [2.227s] Computing hash join... [6.524s] Masking low complexity seeds... [0.204s] Searching alignments... [40.249s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 2/2, index chunk 2/4. Building reference seed array... [13.048s] Building query seed array... [2.529s] Computing hash join... [6.257s] Masking low complexity seeds... [0.212s] Searching alignments... [34.026s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.66s] Building query seed array... [2.57s] Computing hash join... [6.413s] Masking low complexity seeds... [0.237s] Searching alignments... [36.144s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.446s] Building query seed array... [2.19s] Computing hash join... [6.358s] Masking low complexity seeds... [0.214s] Searching alignments... [31.017s] Deallocating memory... [0s] Deallocating buffers... [1.949s] Clearing query masking... [1.668s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [6.513s] Sorting trace points... [1.343s] Computing alignments... [31.238s] Deallocating buffers... [0.014s] Loading trace points... [0.069s] Sorting trace points... [1.205s] Computing alignments... [30.913s] Deallocating buffers... [0.017s] Loading trace points... [0.053s] Sorting trace points... [1.215s] Computing alignments... [31.376s] Deallocating buffers... [0.017s] Loading trace points... [0.068s] Sorting trace points... [0.951s] Computing alignments... [31.021s] Deallocating buffers... [0.016s] Loading trace points... [0.071s] Sorting trace points... [1.058s] Computing alignments... [30.72s] Deallocating buffers... [0.014s] Loading trace points... [0.069s] Sorting trace points... [1.222s] Computing alignments... [30.981s] Deallocating buffers... [0.013s] Loading trace points... [0.05s] Sorting trace points... [0.891s] Computing alignments... [31.192s] Deallocating buffers... [0.015s] Loading trace points... [0.058s] Sorting trace points... [0.882s] Computing alignments... [30.942s] Deallocating buffers... [0.015s] Loading trace points... [0.056s] Sorting trace points... [1.235s] Computing alignments... [31.937s] Deallocating buffers... [0.014s] Loading trace points... [0.087s] Sorting trace points... [1.288s] Computing alignments... [32.709s] Deallocating buffers... [0.014s] Loading trace points... [0.08s] Sorting trace points... [1.313s] Computing alignments... [32.794s] Deallocating buffers... [0.018s] Loading trace points... [0.074s] Sorting trace points... [1.27s] Computing alignments... [32.914s] Deallocating buffers... [0.014s] Loading trace points... [0.064s] Sorting trace points... [0.977s] Computing alignments... [32.964s] Deallocating buffers... [0.015s] Loading trace points... [0.079s] Sorting trace points... [1.305s] Computing alignments... [32.87s] Deallocating buffers... [0.018s] Loading trace points... [0.071s] Sorting trace points... [1.227s] Computing alignments... [33.027s] Deallocating buffers... [0.014s] Loading trace points... [0s] Sorting trace points... [1.122s] Computing alignments... [32.817s] Deallocating buffers... [0.017s] Loading trace points... [0s] [536.882s] Deallocating reference... [0.087s] Loading reference sequences... [30.525s] Masking reference... [31.147s] Initializing dictionary... [0.079s] Initializing temporary storage... [0.007s] Building reference histograms... [32.874s] Allocating buffers... [0s] Processing query block 1, reference block 7/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.471s] Building query seed array... [2.285s] Computing hash join... [6.209s] Masking low complexity seeds... [0.222s] Searching alignments... [85.935s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 1/2, index chunk 2/4. Building reference seed array... [14.182s] Building query seed array... [2.985s] Computing hash join... [6.945s] Masking low complexity seeds... [0.224s] Searching alignments... [59.285s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 1/2, index chunk 3/4. Building reference seed array... [14.066s] Building query seed array... [2.914s] Computing hash join... [7.136s] Masking low complexity seeds... [0.241s] Searching alignments... [47.796s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.802s] Building query seed array... [2.383s] Computing hash join... [6.957s] Masking low complexity seeds... [0.256s] Searching alignments... [41.748s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.858s] Building query seed array... [2.087s] Computing hash join... [6.866s] Masking low complexity seeds... [0.233s] Searching alignments... [44.254s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 2/2, index chunk 2/4. Building reference seed array... [13.121s] Building query seed array... [2.388s] Computing hash join... [6.949s] Masking low complexity seeds... [0.209s] Searching alignments... [35.485s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.739s] Building query seed array... [2.621s] Computing hash join... [7.187s] Masking low complexity seeds... [0.261s] Searching alignments... [38.417s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.698s] Building query seed array... [2.137s] Computing hash join... [6.954s] Masking low complexity seeds... [0.207s] Searching alignments... [32.843s] Deallocating memory... [0s] Deallocating buffers... [2.191s] Clearing query masking... [1.652s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [6.489s] Sorting trace points... [1.328s] Computing alignments... [31.64s] Deallocating buffers... [0.016s] Loading trace points... [0.059s] Sorting trace points... [1.216s] Computing alignments... [31.278s] Deallocating buffers... [0.093s] Loading trace points... [0.083s] Sorting trace points... [1.099s] Computing alignments... [31.716s] Deallocating buffers... [0.017s] Loading trace points... [0.09s] Sorting trace points... [1.238s] Computing alignments... [31.425s] Deallocating buffers... [0.014s] Loading trace points... [0.06s] Sorting trace points... [1.213s] Computing alignments... [30.949s] Deallocating buffers... [0.013s] Loading trace points... [0.065s] Sorting trace points... [1.077s] Computing alignments... [31.351s] Deallocating buffers... [0.014s] Loading trace points... [0.059s] Sorting trace points... [1.118s] Computing alignments... [31.587s] Deallocating buffers... [0.014s] Loading trace points... [0.108s] Sorting trace points... [1.122s] Computing alignments... [31.288s] Deallocating buffers... [0.017s] Loading trace points... [0.082s] Sorting trace points... [1.278s] Computing alignments... [32.371s] Deallocating buffers... [0.014s] Loading trace points... [0.088s] Sorting trace points... [1.247s] Computing alignments... [32.988s] Deallocating buffers... [0.015s] Loading trace points... [0.646s] Sorting trace points... [1.324s] Computing alignments... [33.083s] Deallocating buffers... [0.015s] Loading trace points... [0.05s] Sorting trace points... [1.111s] Computing alignments... [33.11s] Deallocating buffers... [0.079s] Loading trace points... [0.039s] Sorting trace points... [1.038s] Computing alignments... [33.125s] Deallocating buffers... [0.016s] Loading trace points... [0.086s] Sorting trace points... [1.416s] Computing alignments... [33.031s] Deallocating buffers... [0.098s] Loading trace points... [0.063s] Sorting trace points... [1.314s] Computing alignments... [33.079s] Deallocating buffers... [0.014s] Loading trace points... [0s] Sorting trace points... [1.259s] Computing alignments... [32.873s] Deallocating buffers... [0.014s] Loading trace points... [0s] [543.03s] Deallocating reference... [0.057s] Loading reference sequences... [34.677s] Masking reference... [30.897s] Initializing dictionary... [0.077s] Initializing temporary storage... [0.008s] Building reference histograms... [33.09s] Allocating buffers... [0s] Processing query block 1, reference block 8/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.552s] Building query seed array... [2.183s] Computing hash join... [7.283s] Masking low complexity seeds... [0.237s] Searching alignments... [87.31s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 1/2, index chunk 2/4. Building reference seed array... [13.469s] Building query seed array... [3.157s] Computing hash join... [6.865s] Masking low complexity seeds... [0.221s] Searching alignments... [57.504s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 1/2, index chunk 3/4. Building reference seed array... [14.002s] Building query seed array... [2.885s] Computing hash join... [6.943s] Masking low complexity seeds... [0.216s] Searching alignments... [47.679s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.924s] Building query seed array... [2.485s] Computing hash join... [6.532s] Masking low complexity seeds... [0.266s] Searching alignments... [40.776s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.495s] Building query seed array... [2.225s] Computing hash join... [6.529s] Masking low complexity seeds... [0.258s] Searching alignments... [42.709s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.704s] Building query seed array... [2.347s] Computing hash join... [6.899s] Masking low complexity seeds... [0.205s] Searching alignments... [35.093s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 2/2, index chunk 3/4. Building reference seed array... [14.108s] Building query seed array... [2.664s] Computing hash join... [6.885s] Masking low complexity seeds... [0.214s] Searching alignments... [38.103s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.37s] Building query seed array... [2.269s] Computing hash join... [6.938s] Masking low complexity seeds... [0.28s] Searching alignments... [33.04s] Deallocating memory... [0.006s] Deallocating buffers... [2.044s] Clearing query masking... [1.658s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [6.558s] Sorting trace points... [1.318s] Computing alignments... [31.593s] Deallocating buffers... [0.017s] Loading trace points... [0.086s] Sorting trace points... [1.164s] Computing alignments... [31.457s] Deallocating buffers... [0.014s] Loading trace points... [0.06s] Sorting trace points... [1.253s] Computing alignments... [31.821s] Deallocating buffers... [0.014s] Loading trace points... [0.117s] Sorting trace points... [1.239s] Computing alignments... [31.395s] Deallocating buffers... [0.014s] Loading trace points... [0.112s] Sorting trace points... [1.217s] Computing alignments... [31.134s] Deallocating buffers... [0.017s] Loading trace points... [0.078s] Sorting trace points... [1.384s] Computing alignments... [31.428s] Deallocating buffers... [0.245s] Loading trace points... [0.156s] Sorting trace points... [1.244s] Computing alignments... [31.557s] Deallocating buffers... [0.014s] Loading trace points... [0s] Sorting trace points... [1.221s] Computing alignments... [31.249s] Deallocating buffers... [0.014s] Loading trace points... [0.08s] Sorting trace points... [1.272s] Computing alignments... [32.3s] Deallocating buffers... [0.099s] Loading trace points... [0.039s] Sorting trace points... [1.318s] Computing alignments... [33.029s] Deallocating buffers... [0.014s] Loading trace points... [0.469s] Sorting trace points... [1.299s] Computing alignments... [33.165s] Deallocating buffers... [0.015s] Loading trace points... [0.041s] Sorting trace points... [1.208s] Computing alignments... [33.183s] Deallocating buffers... [0.018s] Loading trace points... [0.08s] Sorting trace points... [1.324s] Computing alignments... [33.318s] Deallocating buffers... [0.018s] Loading trace points... [0.066s] Sorting trace points... [1.35s] Computing alignments... [33.182s] Deallocating buffers... [0.015s] Loading trace points... [0.061s] Sorting trace points... [1.271s] Computing alignments... [33.413s] Deallocating buffers... [0.015s] Loading trace points... [0s] Sorting trace points... [0.94s] Computing alignments... [33.009s] Deallocating buffers... [0.016s] Loading trace points... [0s] [545.115s] Deallocating reference... [0.158s] Loading reference sequences... [31.787s] Masking reference... [32.209s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.007s] Building reference histograms... [32.598s] Allocating buffers... [0s] Processing query block 1, reference block 9/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.189s] Building query seed array... [2.282s] Computing hash join... [7.301s] Masking low complexity seeds... [0.225s] Searching alignments... [86.996s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 1/2, index chunk 2/4. Building reference seed array... [13.189s] Building query seed array... [3.219s] Computing hash join... [6.711s] Masking low complexity seeds... [0.264s] Searching alignments... [59.007s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 1/2, index chunk 3/4. Building reference seed array... [14.02s] Building query seed array... [2.812s] Computing hash join... [7.139s] Masking low complexity seeds... [0.214s] Searching alignments... [47.865s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.222s] Building query seed array... [2.511s] Computing hash join... [6.499s] Masking low complexity seeds... [0.235s] Searching alignments... [42.45s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.761s] Building query seed array... [2.155s] Computing hash join... [6.599s] Masking low complexity seeds... [0.242s] Searching alignments... [43.214s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.754s] Building query seed array... [2.632s] Computing hash join... [7s] Masking low complexity seeds... [0.202s] Searching alignments... [33.147s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.506s] Building query seed array... [2.423s] Computing hash join... [7.204s] Masking low complexity seeds... [0.216s] Searching alignments... [37.265s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.175s] Building query seed array... [2.185s] Computing hash join... [7.007s] Masking low complexity seeds... [0.275s] Searching alignments... [33.35s] Deallocating memory... [0s] Deallocating buffers... [2.219s] Clearing query masking... [1.66s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [7.183s] Sorting trace points... [0.966s] Computing alignments... [31.562s] Deallocating buffers... [0.015s] Loading trace points... [0.114s] Sorting trace points... [0.947s] Computing alignments... [31.133s] Deallocating buffers... [0.016s] Loading trace points... [0.06s] Sorting trace points... [1.236s] Computing alignments... [31.574s] Deallocating buffers... [0.018s] Loading trace points... [0.068s] Sorting trace points... [0.885s] Computing alignments... [31.366s] Deallocating buffers... [0.016s] Loading trace points... [0.12s] Sorting trace points... [0.843s] Computing alignments... [30.972s] Deallocating buffers... [0.015s] Loading trace points... [0.08s] Sorting trace points... [1.217s] Computing alignments... [31.275s] Deallocating buffers... [0.014s] Loading trace points... [0.065s] Sorting trace points... [1.212s] Computing alignments... [31.458s] Deallocating buffers... [0.014s] Loading trace points... [0.149s] Sorting trace points... [1.326s] Computing alignments... [31.198s] Deallocating buffers... [0.194s] Loading trace points... [0.11s] Sorting trace points... [1.3s] Computing alignments... [32.147s] Deallocating buffers... [0.014s] Loading trace points... [0.001s] Sorting trace points... [1.217s] Computing alignments... [32.831s] Deallocating buffers... [0.015s] Loading trace points... [0.93s] Sorting trace points... [1.273s] Computing alignments... [32.885s] Deallocating buffers... [0.017s] Loading trace points... [0.09s] Sorting trace points... [1.396s] Computing alignments... [33.384s] Deallocating buffers... [0.215s] Loading trace points... [0.058s] Sorting trace points... [1.049s] Computing alignments... [32.998s] Deallocating buffers... [0.016s] Loading trace points... [0.102s] Sorting trace points... [1.359s] Computing alignments... [32.966s] Deallocating buffers... [0.064s] Loading trace points... [0.071s] Sorting trace points... [1.354s] Computing alignments... [33.126s] Deallocating buffers... [0.141s] Loading trace points... [0s] Sorting trace points... [1.327s] Computing alignments... [32.748s] Deallocating buffers... [0.038s] Loading trace points... [0s] [542.735s] Deallocating reference... [0.057s] Loading reference sequences... [29.306s] Masking reference... [31.247s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.007s] Building reference histograms... [32.828s] Allocating buffers... [0s] Processing query block 1, reference block 10/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.435s] Building query seed array... [2.15s] Computing hash join... [6.824s] Masking low complexity seeds... [0.223s] Searching alignments... [86.337s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 1/2, index chunk 2/4. Building reference seed array... [13.487s] Building query seed array... [3.15s] Computing hash join... [7.182s] Masking low complexity seeds... [0.231s] Searching alignments... [58.469s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.861s] Building query seed array... [2.746s] Computing hash join... [7.601s] Masking low complexity seeds... [0.223s] Searching alignments... [49.104s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.636s] Building query seed array... [2.296s] Computing hash join... [6.612s] Masking low complexity seeds... [0.252s] Searching alignments... [40.562s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.868s] Building query seed array... [2.239s] Computing hash join... [6.696s] Masking low complexity seeds... [0.245s] Searching alignments... [43.991s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 2/2, index chunk 2/4. Building reference seed array... [13.128s] Building query seed array... [2.487s] Computing hash join... [7.039s] Masking low complexity seeds... [0.208s] Searching alignments... [33.277s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.724s] Building query seed array... [2.515s] Computing hash join... [7.055s] Masking low complexity seeds... [0.208s] Searching alignments... [39.052s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.85s] Building query seed array... [2.141s] Computing hash join... [7.007s] Masking low complexity seeds... [0.226s] Searching alignments... [32.943s] Deallocating memory... [0s] Deallocating buffers... [2.3s] Clearing query masking... [1.656s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [6.445s] Sorting trace points... [1.357s] Computing alignments... [31.639s] Deallocating buffers... [0.016s] Loading trace points... [0s] Sorting trace points... [0.864s] Computing alignments... [31.254s] Deallocating buffers... [0.044s] Loading trace points... [0.049s] Sorting trace points... [0.921s] Computing alignments... [31.63s] Deallocating buffers... [0.015s] Loading trace points... [0.068s] Sorting trace points... [0.927s] Computing alignments... [31.291s] Deallocating buffers... [0.016s] Loading trace points... [0.061s] Sorting trace points... [0.872s] Computing alignments... [30.96s] Deallocating buffers... [0.015s] Loading trace points... [0.092s] Sorting trace points... [1.091s] Computing alignments... [31.81s] Deallocating buffers... [0.016s] Loading trace points... [0.064s] Sorting trace points... [1.236s] Computing alignments... [31.431s] Deallocating buffers... [0.014s] Loading trace points... [0.082s] Sorting trace points... [1.175s] Computing alignments... [31.203s] Deallocating buffers... [0.017s] Loading trace points... [0.059s] Sorting trace points... [1.207s] Computing alignments... [32.173s] Deallocating buffers... [0.018s] Loading trace points... [0.099s] Sorting trace points... [0.913s] Computing alignments... [32.959s] Deallocating buffers... [0.016s] Loading trace points... [0.001s] Sorting trace points... [1.318s] Computing alignments... [33.077s] Deallocating buffers... [0.015s] Loading trace points... [0.001s] Sorting trace points... [1.291s] Computing alignments... [33.127s] Deallocating buffers... [0.015s] Loading trace points... [0.031s] Sorting trace points... [1.508s] Computing alignments... [33.233s] Deallocating buffers... [0.3s] Loading trace points... [0.068s] Sorting trace points... [1.332s] Computing alignments... [32.95s] Deallocating buffers... [0.015s] Loading trace points... [0.039s] Sorting trace points... [1.176s] Computing alignments... [33.109s] Deallocating buffers... [0.015s] Loading trace points... [0s] Sorting trace points... [1.288s] Computing alignments... [32.823s] Deallocating buffers... [0.014s] Loading trace points... [0s] [541.076s] Deallocating reference... [0.06s] Loading reference sequences... [29.998s] Masking reference... [32.149s] Initializing dictionary... [0.079s] Initializing temporary storage... [0.007s] Building reference histograms... [32.604s] Allocating buffers... [0s] Processing query block 1, reference block 11/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.596s] Building query seed array... [2.21s] Computing hash join... [7.265s] Masking low complexity seeds... [0.221s] Searching alignments... [84.676s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 1/2, index chunk 2/4. Building reference seed array... [13.404s] Building query seed array... [3.131s] Computing hash join... [7.141s] Masking low complexity seeds... [0.248s] Searching alignments... [58.148s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 1/2, index chunk 3/4. Building reference seed array... [14.303s] Building query seed array... [2.782s] Computing hash join... [7.458s] Masking low complexity seeds... [0.287s] Searching alignments... [46.404s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.954s] Building query seed array... [2.268s] Computing hash join... [6.727s] Masking low complexity seeds... [0.277s] Searching alignments... [40.641s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.64s] Building query seed array... [2.135s] Computing hash join... [6.765s] Masking low complexity seeds... [0.242s] Searching alignments... [43.492s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 2/2, index chunk 2/4. Building reference seed array... [13.117s] Building query seed array... [2.357s] Computing hash join... [7.187s] Masking low complexity seeds... [0.207s] Searching alignments... [33.602s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.329s] Building query seed array... [2.51s] Computing hash join... [7.239s] Masking low complexity seeds... [0.218s] Searching alignments... [38.1s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 2/2, index chunk 4/4. Building reference seed array... [11.039s] Building query seed array... [2.18s] Computing hash join... [6.974s] Masking low complexity seeds... [0.234s] Searching alignments... [31.432s] Deallocating memory... [0s] Deallocating buffers... [2.508s] Clearing query masking... [1.637s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [6.703s] Sorting trace points... [1.295s] Computing alignments... [31.389s] Deallocating buffers... [0.015s] Loading trace points... [0.088s] Sorting trace points... [1.331s] Computing alignments... [31.05s] Deallocating buffers... [0.234s] Loading trace points... [0.068s] Sorting trace points... [1.28s] Computing alignments... [31.41s] Deallocating buffers... [0.014s] Loading trace points... [0.463s] Sorting trace points... [1.107s] Computing alignments... [31.102s] Deallocating buffers... [0.015s] Loading trace points... [0.068s] Sorting trace points... [1.153s] Computing alignments... [30.763s] Deallocating buffers... [0.013s] Loading trace points... [0.052s] Sorting trace points... [1.258s] Computing alignments... [31.073s] Deallocating buffers... [0.121s] Loading trace points... [0.038s] Sorting trace points... [1.237s] Computing alignments... [31.261s] Deallocating buffers... [0.013s] Loading trace points... [0.083s] Sorting trace points... [1.209s] Computing alignments... [31.064s] Deallocating buffers... [0.014s] Loading trace points... [0.074s] Sorting trace points... [1.225s] Computing alignments... [32.079s] Deallocating buffers... [0.018s] Loading trace points... [0.102s] Sorting trace points... [1.432s] Computing alignments... [32.886s] Deallocating buffers... [0.232s] Loading trace points... [0.089s] Sorting trace points... [1.309s] Computing alignments... [32.819s] Deallocating buffers... [0.018s] Loading trace points... [0.07s] Sorting trace points... [1.286s] Computing alignments... [32.878s] Deallocating buffers... [0.014s] Loading trace points... [0.001s] Sorting trace points... [1.289s] Computing alignments... [32.899s] Deallocating buffers... [0.018s] Loading trace points... [0.098s] Sorting trace points... [1.45s] Computing alignments... [32.85s] Deallocating buffers... [0.251s] Loading trace points... [0.076s] Sorting trace points... [1.123s] Computing alignments... [32.93s] Deallocating buffers... [0.015s] Loading trace points... [0s] Sorting trace points... [1.06s] Computing alignments... [32.726s] Deallocating buffers... [0.017s] Loading trace points... [0s] [540.484s] Deallocating reference... [0.06s] Loading reference sequences... [30.313s] Masking reference... [32.201s] Initializing dictionary... [0.077s] Initializing temporary storage... [0.006s] Building reference histograms... [32.662s] Allocating buffers... [0s] Processing query block 1, reference block 12/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.624s] Building query seed array... [2.155s] Computing hash join... [7.392s] Masking low complexity seeds... [0.221s] Searching alignments... [85.864s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 1/2, index chunk 2/4. Building reference seed array... [13.589s] Building query seed array... [3.215s] Computing hash join... [6.768s] Masking low complexity seeds... [0.239s] Searching alignments... [58.014s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 1/2, index chunk 3/4. Building reference seed array... [14.12s] Building query seed array... [2.729s] Computing hash join... [7.363s] Masking low complexity seeds... [0.221s] Searching alignments... [47.719s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.836s] Building query seed array... [2.407s] Computing hash join... [6.662s] Masking low complexity seeds... [0.265s] Searching alignments... [42.179s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.827s] Building query seed array... [2.136s] Computing hash join... [6.516s] Masking low complexity seeds... [0.241s] Searching alignments... [43.719s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.682s] Building query seed array... [2.333s] Computing hash join... [7.262s] Masking low complexity seeds... [0.209s] Searching alignments... [32.672s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.359s] Building query seed array... [2.636s] Computing hash join... [7.156s] Masking low complexity seeds... [0.21s] Searching alignments... [38.214s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.723s] Building query seed array... [2.09s] Computing hash join... [6.986s] Masking low complexity seeds... [0.263s] Searching alignments... [31.885s] Deallocating memory... [0s] Deallocating buffers... [2.337s] Clearing query masking... [1.655s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [6.598s] Sorting trace points... [1.319s] Computing alignments... [31.626s] Deallocating buffers... [0.016s] Loading trace points... [0.053s] Sorting trace points... [1.231s] Computing alignments... [31.253s] Deallocating buffers... [0.014s] Loading trace points... [0.074s] Sorting trace points... [1.086s] Computing alignments... [31.682s] Deallocating buffers... [0.015s] Loading trace points... [0.075s] Sorting trace points... [0.875s] Computing alignments... [31.336s] Deallocating buffers... [0.015s] Loading trace points... [0.065s] Sorting trace points... [1.141s] Computing alignments... [30.998s] Deallocating buffers... [0.016s] Loading trace points... [0.093s] Sorting trace points... [1.215s] Computing alignments... [31.24s] Deallocating buffers... [0.07s] Loading trace points... [0.052s] Sorting trace points... [1.249s] Computing alignments... [31.534s] Deallocating buffers... [0.033s] Loading trace points... [0.084s] Sorting trace points... [1.234s] Computing alignments... [31.254s] Deallocating buffers... [0.014s] Loading trace points... [0.072s] Sorting trace points... [1.165s] Computing alignments... [32.311s] Deallocating buffers... [0.017s] Loading trace points... [0.043s] Sorting trace points... [1.241s] Computing alignments... [32.943s] Deallocating buffers... [0.015s] Loading trace points... [0.035s] Sorting trace points... [0.956s] Computing alignments... [32.912s] Deallocating buffers... [0.017s] Loading trace points... [0.054s] Sorting trace points... [1.275s] Computing alignments... [33.137s] Deallocating buffers... [0.018s] Loading trace points... [0.04s] Sorting trace points... [0.964s] Computing alignments... [33.175s] Deallocating buffers... [0.016s] Loading trace points... [0.103s] Sorting trace points... [1.134s] Computing alignments... [33.144s] Deallocating buffers... [0.017s] Loading trace points... [0.073s] Sorting trace points... [1.273s] Computing alignments... [33.328s] Deallocating buffers... [0.019s] Loading trace points... [0s] Sorting trace points... [1.266s] Computing alignments... [32.979s] Deallocating buffers... [0.018s] Loading trace points... [0s] [541.616s] Deallocating reference... [0.063s] Loading reference sequences... [29.841s] Masking reference... [32.177s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.006s] Building reference histograms... [32.471s] Allocating buffers... [0s] Processing query block 1, reference block 13/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.221s] Building query seed array... [2.113s] Computing hash join... [7.752s] Masking low complexity seeds... [0.217s] Searching alignments... [89.113s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 1/2, index chunk 2/4. Building reference seed array... [13.248s] Building query seed array... [2.998s] Computing hash join... [6.638s] Masking low complexity seeds... [0.248s] Searching alignments... [59.265s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 1/2, index chunk 3/4. Building reference seed array... [14.039s] Building query seed array... [2.867s] Computing hash join... [7.03s] Masking low complexity seeds... [0.256s] Searching alignments... [46.83s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.106s] Building query seed array... [2.504s] Computing hash join... [7.145s] Masking low complexity seeds... [0.219s] Searching alignments... [40.985s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.514s] Building query seed array... [2.147s] Computing hash join... [6.941s] Masking low complexity seeds... [0.278s] Searching alignments... [43.762s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.959s] Building query seed array... [2.643s] Computing hash join... [6.663s] Masking low complexity seeds... [0.254s] Searching alignments... [32.933s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 2/2, index chunk 3/4. Building reference seed array... [14.247s] Building query seed array... [2.542s] Computing hash join... [6.474s] Masking low complexity seeds... [0.242s] Searching alignments... [37.615s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.654s] Building query seed array... [2.177s] Computing hash join... [6.402s] Masking low complexity seeds... [0.217s] Searching alignments... [32.39s] Deallocating memory... [0s] Deallocating buffers... [2.39s] Clearing query masking... [1.899s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [6.787s] Sorting trace points... [1.266s] Computing alignments... [31.436s] Deallocating buffers... [0.016s] Loading trace points... [0.002s] Sorting trace points... [1.191s] Computing alignments... [31.218s] Deallocating buffers... [0.217s] Loading trace points... [0.144s] Sorting trace points... [1.278s] Computing alignments... [31.543s] Deallocating buffers... [0.017s] Loading trace points... [0.09s] Sorting trace points... [1.233s] Computing alignments... [31.146s] Deallocating buffers... [0.014s] Loading trace points... [0.088s] Sorting trace points... [0.881s] Computing alignments... [30.922s] Deallocating buffers... [0.015s] Loading trace points... [0.093s] Sorting trace points... [1.225s] Computing alignments... [31.138s] Deallocating buffers... [0.017s] Loading trace points... [0.053s] Sorting trace points... [0.978s] Computing alignments... [31.436s] Deallocating buffers... [0.015s] Loading trace points... [0.439s] Sorting trace points... [0.948s] Computing alignments... [31.116s] Deallocating buffers... [0.015s] Loading trace points... [0.073s] Sorting trace points... [1.179s] Computing alignments... [32.028s] Deallocating buffers... [0.017s] Loading trace points... [0.074s] Sorting trace points... [0.98s] Computing alignments... [32.828s] Deallocating buffers... [0.016s] Loading trace points... [0.002s] Sorting trace points... [1.288s] Computing alignments... [32.869s] Deallocating buffers... [0.018s] Loading trace points... [0.001s] Sorting trace points... [1.33s] Computing alignments... [32.897s] Deallocating buffers... [0.014s] Loading trace points... [0.061s] Sorting trace points... [1.397s] Computing alignments... [33.038s] Deallocating buffers... [0.196s] Loading trace points... [0.138s] Sorting trace points... [1.359s] Computing alignments... [32.983s] Deallocating buffers... [0.015s] Loading trace points... [0.779s] Sorting trace points... [1.343s] Computing alignments... [33.121s] Deallocating buffers... [0.015s] Loading trace points... [0s] Sorting trace points... [1.287s] Computing alignments... [32.841s] Deallocating buffers... [0.018s] Loading trace points... [0s] [541.457s] Deallocating reference... [0.057s] Loading reference sequences... [25.642s] Masking reference... [25.817s] Initializing dictionary... [0.063s] Initializing temporary storage... [0.005s] Building reference histograms... [26.838s] Allocating buffers... [0s] Processing query block 1, reference block 14/14, shape 1/2, index chunk 1/4. Building reference seed array... [8.369s] Building query seed array... [2.165s] Computing hash join... [5.323s] Masking low complexity seeds... [0.206s] Searching alignments... [68.783s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 1/2, index chunk 2/4. Building reference seed array... [10.049s] Building query seed array... [2.837s] Computing hash join... [5.387s] Masking low complexity seeds... [0.209s] Searching alignments... [46.637s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 1/2, index chunk 3/4. Building reference seed array... [11.1s] Building query seed array... [2.875s] Computing hash join... [5.47s] Masking low complexity seeds... [0.21s] Searching alignments... [38.378s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 1/2, index chunk 4/4. Building reference seed array... [8.355s] Building query seed array... [2.537s] Computing hash join... [5.572s] Masking low complexity seeds... [0.246s] Searching alignments... [32.586s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 2/2, index chunk 1/4. Building reference seed array... [8.331s] Building query seed array... [2.147s] Computing hash join... [5.315s] Masking low complexity seeds... [0.249s] Searching alignments... [35.837s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 2/2, index chunk 2/4. Building reference seed array... [10.305s] Building query seed array... [2.319s] Computing hash join... [5.115s] Masking low complexity seeds... [0.196s] Searching alignments... [27.539s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 2/2, index chunk 3/4. Building reference seed array... [11.021s] Building query seed array... [2.585s] Computing hash join... [5.509s] Masking low complexity seeds... [0.224s] Searching alignments... [32.409s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 2/2, index chunk 4/4. Building reference seed array... [8.415s] Building query seed array... [2.154s] Computing hash join... [5.577s] Masking low complexity seeds... [0.254s] Searching alignments... [25.679s] Deallocating memory... [0s] Deallocating buffers... [0.963s] Clearing query masking... [1.644s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [10.717s] Sorting trace points... [2.246s] Computing alignments... [49.739s] Deallocating buffers... [0.021s] Loading trace points... [0.9s] Sorting trace points... [2.072s] Computing alignments... [49.975s] Deallocating buffers... [0.169s] Loading trace points... [0.189s] Sorting trace points... [1.693s] Computing alignments... [49.307s] Deallocating buffers... [0.024s] Loading trace points... [0.151s] Sorting trace points... [1.96s] Computing alignments... [49.754s] Deallocating buffers... [0.027s] Loading trace points... [0.172s] Sorting trace points... [1.782s] Computing alignments... [51.813s] Deallocating buffers... [0.024s] Loading trace points... [0.173s] Sorting trace points... [1.819s] Computing alignments... [52.593s] Deallocating buffers... [0.025s] Loading trace points... [0.201s] Sorting trace points... [1.672s] Computing alignments... [52.574s] Deallocating buffers... [0.026s] Loading trace points... [0s] Sorting trace points... [1.87s] Computing alignments... [52.121s] Deallocating buffers... [0.024s] Loading trace points... [0s] [436.158s] Deallocating reference... [0.046s] Loading reference sequences... [0.085s] Deallocating buffers... [0s] Joining output blocks... Joining output blocks... [2172.03s] [2172.03s] Deallocating queries... [0.073s] Loading query sequences... [0s] Closing the input file... [0s] Closing the output file... Loading dictionary... [3.555s] [4.63s] Closing the database... [0s] Cleaning up... [0s] Total time = 18776.5s Reported 2474669643 pairwise alignments, 2474669643 HSPs. 13436671 queries aligned. DIAMOND BLASTx on /gscratch/srlab/sam/data/P_verrucosa/RNAseq/E1_R1.fastp-trim.20230215.fq.gz complete: E1_R1.blastx.meganized.daa Now MEGANizing E1_R1.blastx.meganized.daa Version MEGAN Community Edition (version 6.22.0, built 19 Feb 2022) Author(s) Daniel H. Huson Copyright (C) 2022 Daniel H. Huson. This program comes with ABSOLUTELY NO WARRANTY. Java version: 17.0.2 Functional classifications to use: EC, EGGNOG, GTDB, INTERPRO2GO, SEED Loading ncbi.map: 2,396,736 Loading ncbi.tre: 2,396,740 Loading ec.map: 8,200 Loading ec.tre: 8,204 Loading eggnog.map: 30,875 Loading eggnog.tre: 30,986 Loading gtdb.map: 240,103 Loading gtdb.tre: 240,107 Loading interpro2go.map: 14,242 Loading interpro2go.tre: 28,907 Loading seed.map: 961 Loading seed.tre: 962 Meganizing: E1_R1.blastx.meganized.daa Meganizing init Annotating DAA file using FAST mode (accession database and first accession per line) Annotating references 10% 20% 30% 40% 50% 60% 70% 100% (507.8s) Writing 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (1.3s) Binning reads Initializing... Initializing binning... Using 'Naive LCA' algorithm for binning: Taxonomy Using Best-Hit algorithm for binning: SEED Using Best-Hit algorithm for binning: EGGNOG Using 'Naive LCA' algorithm for binning: GTDB Using Best-Hit algorithm for binning: EC Using Best-Hit algorithm for binning: INTERPRO2GO Binning reads... Binning reads Analyzing alignments 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (4,754.2s) Total reads: 13,436,671 With hits: 13,436,671 Alignments: 2,472,424,094 Assig. Taxonomy: 12,584,646 Assig. SEED: 106,300 Assig. EGGNOG: 57,156 Assig. GTDB: 402,065 Assig. EC: 2,015,445 Assig. INTERPRO2GO: 1,158,527 MinSupport set to: 6718 Binning reads Applying min-support & disabled filter to Taxonomy... 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (0.5s) Min-supp. changes: 4,109 Binning reads Applying min-support & disabled filter to GTDB... 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (11.2s) Min-supp. changes: 3,020 Binning reads Writing classification tables 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (31.9s) Binning reads Syncing 100% (0.3s) Class. Taxonomy: 74 Class. SEED: 503 Class. EGGNOG: 1,776 Class. GTDB: 20 Class. EC: 2,389 Class. INTERPRO2GO: 7,846 Total time: 5,316s Peak memory: 35.8 of 195.3G MEGANization of E1_R1.blastx.meganized.daa completed. Generating MD5 checksum for /gscratch/srlab/sam/data/P_verrucosa/RNAseq/E1_R2.fastp-trim.20230215.fq.gz... e0dba93e9762bc1da1cb366eb86b262b /gscratch/srlab/sam/data/P_verrucosa/RNAseq/E1_R2.fastp-trim.20230215.fq.gz Running DIAMOND BLASTx on /gscratch/srlab/sam/data/P_verrucosa/RNAseq/E1_R2.fastp-trim.20230215.fq.gz. diamond v2.1.1.155 (C) Max Planck Society for the Advancement of Science Documentation, support and updates available at http://www.diamondsearch.org Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021) #CPU threads: 40 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: Percentage range of top alignment score to report hits: 5 Opening the database... [0.386s] Database: /gscratch/srlab/blastdbs/20230215-ncbi-nr/20230215-ncbi-nr.dmnd (type: Diamond database, sequences: 526308523, letters: 207134680681) Block size = 15000000000 Opening the input file... [0.835s] Opening the output file... [0s] Loading query sequences... [77.702s] Masking queries... [19.609s] Algorithm: Double-indexed Building query histograms... [19.169s] Loading reference sequences... [255.062s] Masking reference... [31.003s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.008s] Building reference histograms... [32.824s] Allocating buffers... [0s] Processing query block 1, reference block 1/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.428s] Building query seed array... [2.2s] Computing hash join... [6.803s] Masking low complexity seeds... [0.528s] Searching alignments... [84.715s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 1/2, index chunk 2/4. Building reference seed array... [13s] Building query seed array... [3.082s] Computing hash join... [7.066s] Masking low complexity seeds... [0.313s] Searching alignments... [58.358s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.746s] Building query seed array... [2.871s] Computing hash join... [7.046s] Masking low complexity seeds... [0.245s] Searching alignments... [46.767s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.103s] Building query seed array... [2.872s] Computing hash join... [6.666s] Masking low complexity seeds... [0.295s] Searching alignments... [40.392s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.426s] Building query seed array... [2.125s] Computing hash join... [6.32s] Masking low complexity seeds... [0.257s] Searching alignments... [47.62s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.4s] Building query seed array... [2.328s] Computing hash join... [6.491s] Masking low complexity seeds... [0.243s] Searching alignments... [33.628s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.416s] Building query seed array... [2.633s] Computing hash join... [6.404s] Masking low complexity seeds... [0.237s] Searching alignments... [39.985s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 2/2, index chunk 4/4. Building reference seed array... [9.978s] Building query seed array... [2.099s] Computing hash join... [6.22s] Masking low complexity seeds... [0.249s] Searching alignments... [32.853s] Deallocating memory... [0s] Deallocating buffers... [1.316s] Clearing query masking... [1.737s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [6.463s] Sorting trace points... [1.293s] Computing alignments... [31.242s] Deallocating buffers... [0.014s] Loading trace points... [0.056s] Sorting trace points... [0.859s] Computing alignments... [31.022s] Deallocating buffers... [0.015s] Loading trace points... [0.066s] Sorting trace points... [1.036s] Computing alignments... [31.2s] Deallocating buffers... [0.014s] Loading trace points... [0.078s] Sorting trace points... [1.014s] Computing alignments... [31.206s] Deallocating buffers... [0.016s] Loading trace points... [0.057s] Sorting trace points... [1.181s] Computing alignments... [30.963s] Deallocating buffers... [0.013s] Loading trace points... [0.068s] Sorting trace points... [1.202s] Computing alignments... [31.361s] Deallocating buffers... [0.013s] Loading trace points... [0.062s] Sorting trace points... [1.188s] Computing alignments... [30.766s] Deallocating buffers... [0.013s] Loading trace points... [0.07s] Sorting trace points... [1.088s] Computing alignments... [30.836s] Deallocating buffers... [0.014s] Loading trace points... [0.064s] Sorting trace points... [1.274s] Computing alignments... [32.115s] Deallocating buffers... [0.014s] Loading trace points... [0.036s] Sorting trace points... [1.299s] Computing alignments... [33.663s] Deallocating buffers... [0.018s] Loading trace points... [0.001s] Sorting trace points... [1.298s] Computing alignments... [33.871s] Deallocating buffers... [0.018s] Loading trace points... [0.038s] Sorting trace points... [1.079s] Computing alignments... [33.764s] Deallocating buffers... [0.016s] Loading trace points... [0.038s] Sorting trace points... [1.327s] Computing alignments... [34.023s] Deallocating buffers... [0.015s] Loading trace points... [0.088s] Sorting trace points... [1.222s] Computing alignments... [33.888s] Deallocating buffers... [0.018s] Loading trace points... [0.075s] Sorting trace points... [1.318s] Computing alignments... [33.967s] Deallocating buffers... [0.018s] Loading trace points... [0s] Sorting trace points... [1.301s] Computing alignments... [33.666s] Deallocating buffers... [0.015s] Loading trace points... [0s] [544.298s] Deallocating reference... [0.057s] Loading reference sequences... [29.37s] Masking reference... [30.944s] Initializing dictionary... [0.077s] Initializing temporary storage... [0.008s] Building reference histograms... [32.79s] Allocating buffers... [0.001s] Processing query block 1, reference block 2/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.571s] Building query seed array... [2.148s] Computing hash join... [6.797s] Masking low complexity seeds... [0.396s] Searching alignments... [81.216s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.943s] Building query seed array... [2.741s] Computing hash join... [6.01s] Masking low complexity seeds... [0.286s] Searching alignments... [56.905s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.996s] Building query seed array... [2.821s] Computing hash join... [5.95s] Masking low complexity seeds... [0.291s] Searching alignments... [47.389s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.394s] Building query seed array... [2.244s] Computing hash join... [6.112s] Masking low complexity seeds... [0.272s] Searching alignments... [40.646s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.617s] Building query seed array... [2.134s] Computing hash join... [5.69s] Masking low complexity seeds... [0.234s] Searching alignments... [45.101s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 2/2, index chunk 2/4. Building reference seed array... [13.201s] Building query seed array... [2.413s] Computing hash join... [5.971s] Masking low complexity seeds... [0.258s] Searching alignments... [33.32s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.712s] Building query seed array... [2.499s] Computing hash join... [5.851s] Masking low complexity seeds... [0.288s] Searching alignments... [38.65s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.98s] Building query seed array... [2s] Computing hash join... [5.825s] Masking low complexity seeds... [0.309s] Searching alignments... [31.296s] Deallocating memory... [0s] Deallocating buffers... [1.978s] Clearing query masking... [1.655s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [6.36s] Sorting trace points... [1.262s] Computing alignments... [30.919s] Deallocating buffers... [0.014s] Loading trace points... [0.057s] Sorting trace points... [1.213s] Computing alignments... [30.802s] Deallocating buffers... [0.017s] Loading trace points... [0.002s] Sorting trace points... [1.216s] Computing alignments... [30.973s] Deallocating buffers... [0.016s] Loading trace points... [0.075s] Sorting trace points... [1.147s] Computing alignments... [30.833s] Deallocating buffers... [0.016s] Loading trace points... [0.081s] Sorting trace points... [0.859s] Computing alignments... [30.648s] Deallocating buffers... [0.015s] Loading trace points... [0.058s] Sorting trace points... [1.201s] Computing alignments... [31.145s] Deallocating buffers... [0.017s] Loading trace points... [0.079s] Sorting trace points... [1.178s] Computing alignments... [30.453s] Deallocating buffers... [0.016s] Loading trace points... [0.067s] Sorting trace points... [1.154s] Computing alignments... [30.477s] Deallocating buffers... [0.013s] Loading trace points... [0.044s] Sorting trace points... [1.265s] Computing alignments... [31.731s] Deallocating buffers... [0.017s] Loading trace points... [0.083s] Sorting trace points... [1.31s] Computing alignments... [33.298s] Deallocating buffers... [0.015s] Loading trace points... [0.71s] Sorting trace points... [1.37s] Computing alignments... [33.492s] Deallocating buffers... [0.018s] Loading trace points... [0.081s] Sorting trace points... [1.34s] Computing alignments... [33.456s] Deallocating buffers... [0.015s] Loading trace points... [0.079s] Sorting trace points... [1.344s] Computing alignments... [33.767s] Deallocating buffers... [0.016s] Loading trace points... [0.071s] Sorting trace points... [1.323s] Computing alignments... [33.553s] Deallocating buffers... [0.019s] Loading trace points... [0.061s] Sorting trace points... [1.289s] Computing alignments... [33.661s] Deallocating buffers... [0.018s] Loading trace points... [0s] Sorting trace points... [1.303s] Computing alignments... [33.446s] Deallocating buffers... [0.015s] Loading trace points... [0s] [540.757s] Deallocating reference... [0.058s] Loading reference sequences... [29.219s] Masking reference... [31.046s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.007s] Building reference histograms... [32.947s] Allocating buffers... [0.001s] Processing query block 1, reference block 3/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.313s] Building query seed array... [2.2s] Computing hash join... [6.7s] Masking low complexity seeds... [0.441s] Searching alignments... [85.462s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 1/2, index chunk 2/4. Building reference seed array... [13.606s] Building query seed array... [3.02s] Computing hash join... [6.212s] Masking low complexity seeds... [0.328s] Searching alignments... [58.801s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.977s] Building query seed array... [2.8s] Computing hash join... [5.912s] Masking low complexity seeds... [0.329s] Searching alignments... [49.172s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 1/2, index chunk 4/4. Building reference seed array... [11.305s] Building query seed array... [2.423s] Computing hash join... [5.455s] Masking low complexity seeds... [0.298s] Searching alignments... [41.735s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 2/2, index chunk 1/4. Building reference seed array... [11.018s] Building query seed array... [2.208s] Computing hash join... [5.623s] Masking low complexity seeds... [0.26s] Searching alignments... [47.633s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 2/2, index chunk 2/4. Building reference seed array... [13.21s] Building query seed array... [2.511s] Computing hash join... [5.483s] Masking low complexity seeds... [0.236s] Searching alignments... [33.872s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 2/2, index chunk 3/4. Building reference seed array... [14.166s] Building query seed array... [2.602s] Computing hash join... [5.541s] Masking low complexity seeds... [0.239s] Searching alignments... [40.842s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.465s] Building query seed array... [2.163s] Computing hash join... [5.142s] Masking low complexity seeds... [0.231s] Searching alignments... [33.417s] Deallocating memory... [0s] Deallocating buffers... [2.61s] Clearing query masking... [1.629s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [6.462s] Sorting trace points... [1.202s] Computing alignments... [31.024s] Deallocating buffers... [0.016s] Loading trace points... [0.075s] Sorting trace points... [1.186s] Computing alignments... [30.856s] Deallocating buffers... [0.014s] Loading trace points... [0.113s] Sorting trace points... [1.213s] Computing alignments... [30.921s] Deallocating buffers... [0.014s] Loading trace points... [0.061s] Sorting trace points... [1.224s] Computing alignments... [30.916s] Deallocating buffers... [0.014s] Loading trace points... [0.048s] Sorting trace points... [1.165s] Computing alignments... [30.813s] Deallocating buffers... [0.014s] Loading trace points... [0.06s] Sorting trace points... [1.244s] Computing alignments... [31.291s] Deallocating buffers... [0.017s] Loading trace points... [0.073s] Sorting trace points... [1.168s] Computing alignments... [30.674s] Deallocating buffers... [0.016s] Loading trace points... [0.049s] Sorting trace points... [1.17s] Computing alignments... [30.748s] Deallocating buffers... [0.013s] Loading trace points... [0.051s] Sorting trace points... [1.271s] Computing alignments... [32.01s] Deallocating buffers... [0.014s] Loading trace points... [0.047s] Sorting trace points... [1.323s] Computing alignments... [33.605s] Deallocating buffers... [0.024s] Loading trace points... [0s] Sorting trace points... [1.317s] Computing alignments... [33.7s] Deallocating buffers... [0.018s] Loading trace points... [0.048s] Sorting trace points... [1.419s] Computing alignments... [33.707s] Deallocating buffers... [0.049s] Loading trace points... [0.043s] Sorting trace points... [1.302s] Computing alignments... [33.888s] Deallocating buffers... [0.022s] Loading trace points... [0.09s] Sorting trace points... [1.318s] Computing alignments... [33.754s] Deallocating buffers... [0.014s] Loading trace points... [0.062s] Sorting trace points... [1.255s] Computing alignments... [33.846s] Deallocating buffers... [0.015s] Loading trace points... [0s] Sorting trace points... [1.349s] Computing alignments... [33.591s] Deallocating buffers... [0.05s] Loading trace points... [0s] [543.232s] Deallocating reference... [0.063s] Loading reference sequences... [29.944s] Masking reference... [30.962s] Initializing dictionary... [0.077s] Initializing temporary storage... [0.007s] Building reference histograms... [33.288s] Allocating buffers... [0.001s] Processing query block 1, reference block 4/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.232s] Building query seed array... [2.154s] Computing hash join... [6.65s] Masking low complexity seeds... [0.273s] Searching alignments... [82.139s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 1/2, index chunk 2/4. Building reference seed array... [13.775s] Building query seed array... [3.51s] Computing hash join... [7.144s] Masking low complexity seeds... [0.346s] Searching alignments... [56.634s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.938s] Building query seed array... [2.884s] Computing hash join... [7.23s] Masking low complexity seeds... [0.371s] Searching alignments... [46.09s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.332s] Building query seed array... [2.415s] Computing hash join... [6.391s] Masking low complexity seeds... [0.269s] Searching alignments... [41.502s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.463s] Building query seed array... [2.182s] Computing hash join... [6.234s] Masking low complexity seeds... [0.255s] Searching alignments... [45.875s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 2/2, index chunk 2/4. Building reference seed array... [13.164s] Building query seed array... [2.456s] Computing hash join... [7.141s] Masking low complexity seeds... [0.36s] Searching alignments... [33.518s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.796s] Building query seed array... [2.517s] Computing hash join... [7.023s] Masking low complexity seeds... [0.277s] Searching alignments... [38.793s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.31s] Building query seed array... [2.151s] Computing hash join... [6.363s] Masking low complexity seeds... [0.245s] Searching alignments... [32.78s] Deallocating memory... [0s] Deallocating buffers... [1.784s] Clearing query masking... [1.681s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [6.477s] Sorting trace points... [1.268s] Computing alignments... [31.092s] Deallocating buffers... [0.015s] Loading trace points... [0.054s] Sorting trace points... [1.178s] Computing alignments... [30.882s] Deallocating buffers... [0.017s] Loading trace points... [0.056s] Sorting trace points... [1.236s] Computing alignments... [31.049s] Deallocating buffers... [0.014s] Loading trace points... [0.61s] Sorting trace points... [1.021s] Computing alignments... [30.982s] Deallocating buffers... [0.015s] Loading trace points... [0.051s] Sorting trace points... [1.198s] Computing alignments... [30.858s] Deallocating buffers... [0.013s] Loading trace points... [0.086s] Sorting trace points... [1.058s] Computing alignments... [31.257s] Deallocating buffers... [0.014s] Loading trace points... [0.111s] Sorting trace points... [1.228s] Computing alignments... [30.553s] Deallocating buffers... [0.016s] Loading trace points... [0.055s] Sorting trace points... [1.136s] Computing alignments... [30.566s] Deallocating buffers... [0.013s] Loading trace points... [0.072s] Sorting trace points... [0.924s] Computing alignments... [31.911s] Deallocating buffers... [0.015s] Loading trace points... [0.068s] Sorting trace points... [1.296s] Computing alignments... [33.386s] Deallocating buffers... [0.014s] Loading trace points... [0.09s] Sorting trace points... [1.485s] Computing alignments... [33.528s] Deallocating buffers... [0.1s] Loading trace points... [0.061s] Sorting trace points... [0.974s] Computing alignments... [33.516s] Deallocating buffers... [0.017s] Loading trace points... [0.061s] Sorting trace points... [1.307s] Computing alignments... [33.768s] Deallocating buffers... [0.015s] Loading trace points... [0.083s] Sorting trace points... [1.26s] Computing alignments... [33.588s] Deallocating buffers... [0.017s] Loading trace points... [0.081s] Sorting trace points... [1.247s] Computing alignments... [33.721s] Deallocating buffers... [0.018s] Loading trace points... [0s] Sorting trace points... [1.31s] Computing alignments... [33.552s] Deallocating buffers... [0.018s] Loading trace points... [0s] [541.97s] Deallocating reference... [0.066s] Loading reference sequences... [29.292s] Masking reference... [32.151s] Initializing dictionary... [0.079s] Initializing temporary storage... [0.007s] Building reference histograms... [32.815s] Allocating buffers... [0s] Processing query block 1, reference block 5/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.851s] Building query seed array... [2.23s] Computing hash join... [7.144s] Masking low complexity seeds... [0.465s] Searching alignments... [81.049s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 1/2, index chunk 2/4. Building reference seed array... [13.299s] Building query seed array... [3.004s] Computing hash join... [6.981s] Masking low complexity seeds... [0.255s] Searching alignments... [60.54s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 1/2, index chunk 3/4. Building reference seed array... [14.004s] Building query seed array... [2.957s] Computing hash join... [6.637s] Masking low complexity seeds... [0.268s] Searching alignments... [46.098s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.592s] Building query seed array... [2.516s] Computing hash join... [6.79s] Masking low complexity seeds... [0.281s] Searching alignments... [41.445s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.619s] Building query seed array... [2.195s] Computing hash join... [6.791s] Masking low complexity seeds... [0.265s] Searching alignments... [45.427s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.959s] Building query seed array... [2.443s] Computing hash join... [6.523s] Masking low complexity seeds... [0.247s] Searching alignments... [33.487s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.633s] Building query seed array... [2.647s] Computing hash join... [6.396s] Masking low complexity seeds... [0.245s] Searching alignments... [39.761s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.367s] Building query seed array... [2.077s] Computing hash join... [6.459s] Masking low complexity seeds... [0.243s] Searching alignments... [32.543s] Deallocating memory... [0s] Deallocating buffers... [1.895s] Clearing query masking... [1.68s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [6.408s] Sorting trace points... [1.311s] Computing alignments... [30.806s] Deallocating buffers... [0.014s] Loading trace points... [0.048s] Sorting trace points... [1.243s] Computing alignments... [30.671s] Deallocating buffers... [0.111s] Loading trace points... [0.047s] Sorting trace points... [1.235s] Computing alignments... [30.975s] Deallocating buffers... [0.017s] Loading trace points... [0.069s] Sorting trace points... [1.206s] Computing alignments... [30.867s] Deallocating buffers... [0.017s] Loading trace points... [0.046s] Sorting trace points... [1.191s] Computing alignments... [30.679s] Deallocating buffers... [0.016s] Loading trace points... [0.062s] Sorting trace points... [1.222s] Computing alignments... [31.071s] Deallocating buffers... [0.014s] Loading trace points... [0.082s] Sorting trace points... [1.175s] Computing alignments... [30.438s] Deallocating buffers... [0.013s] Loading trace points... [0.056s] Sorting trace points... [1.177s] Computing alignments... [30.522s] Deallocating buffers... [0.017s] Loading trace points... [0.055s] Sorting trace points... [1.047s] Computing alignments... [31.709s] Deallocating buffers... [0.015s] Loading trace points... [0s] Sorting trace points... [1.289s] Computing alignments... [33.313s] Deallocating buffers... [0.018s] Loading trace points... [0.084s] Sorting trace points... [1.296s] Computing alignments... [33.621s] Deallocating buffers... [0.015s] Loading trace points... [0.001s] Sorting trace points... [1.352s] Computing alignments... [33.553s] Deallocating buffers... [0.018s] Loading trace points... [0.064s] Sorting trace points... [1.311s] Computing alignments... [33.77s] Deallocating buffers... [0.022s] Loading trace points... [0.12s] Sorting trace points... [1.342s] Computing alignments... [33.606s] Deallocating buffers... [0.015s] Loading trace points... [0.054s] Sorting trace points... [1.342s] Computing alignments... [33.613s] Deallocating buffers... [0.015s] Loading trace points... [0s] Sorting trace points... [1.29s] Computing alignments... [33.406s] Deallocating buffers... [0.018s] Loading trace points... [0s] [540.453s] Deallocating reference... [0.058s] Loading reference sequences... [30.863s] Masking reference... [30.952s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.007s] Building reference histograms... [32.765s] Allocating buffers... [0.001s] Processing query block 1, reference block 6/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.055s] Building query seed array... [2.164s] Computing hash join... [7.059s] Masking low complexity seeds... [0.608s] Searching alignments... [78.095s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 1/2, index chunk 2/4. Building reference seed array... [13.147s] Building query seed array... [3.165s] Computing hash join... [6.694s] Masking low complexity seeds... [0.266s] Searching alignments... [56.546s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.657s] Building query seed array... [2.968s] Computing hash join... [6.374s] Masking low complexity seeds... [0.287s] Searching alignments... [45.172s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.461s] Building query seed array... [2.355s] Computing hash join... [6.975s] Masking low complexity seeds... [0.292s] Searching alignments... [38.659s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.689s] Building query seed array... [2.129s] Computing hash join... [6.684s] Masking low complexity seeds... [0.3s] Searching alignments... [43.624s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.374s] Building query seed array... [2.357s] Computing hash join... [6.437s] Masking low complexity seeds... [0.24s] Searching alignments... [32.274s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 2/2, index chunk 3/4. Building reference seed array... [14.009s] Building query seed array... [2.671s] Computing hash join... [6.356s] Masking low complexity seeds... [0.238s] Searching alignments... [37.407s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.358s] Building query seed array... [2.043s] Computing hash join... [6.265s] Masking low complexity seeds... [0.235s] Searching alignments... [30.999s] Deallocating memory... [0s] Deallocating buffers... [1.975s] Clearing query masking... [1.684s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [6.409s] Sorting trace points... [1.288s] Computing alignments... [30.599s] Deallocating buffers... [0.014s] Loading trace points... [0.077s] Sorting trace points... [0.899s] Computing alignments... [30.533s] Deallocating buffers... [0.014s] Loading trace points... [0.092s] Sorting trace points... [1.179s] Computing alignments... [30.721s] Deallocating buffers... [0.017s] Loading trace points... [0.075s] Sorting trace points... [1.04s] Computing alignments... [30.647s] Deallocating buffers... [0.016s] Loading trace points... [0.033s] Sorting trace points... [1.03s] Computing alignments... [30.413s] Deallocating buffers... [0.016s] Loading trace points... [0.09s] Sorting trace points... [1.11s] Computing alignments... [30.81s] Deallocating buffers... [0.017s] Loading trace points... [0.051s] Sorting trace points... [1.202s] Computing alignments... [30.246s] Deallocating buffers... [0.014s] Loading trace points... [0.052s] Sorting trace points... [1.205s] Computing alignments... [30.254s] Deallocating buffers... [0.013s] Loading trace points... [0.063s] Sorting trace points... [1.273s] Computing alignments... [31.472s] Deallocating buffers... [0.017s] Loading trace points... [0.068s] Sorting trace points... [1.309s] Computing alignments... [33.069s] Deallocating buffers... [0.021s] Loading trace points... [0.066s] Sorting trace points... [1.357s] Computing alignments... [33.234s] Deallocating buffers... [0.018s] Loading trace points... [0.06s] Sorting trace points... [1.202s] Computing alignments... [33.234s] Deallocating buffers... [0.017s] Loading trace points... [0.092s] Sorting trace points... [1.315s] Computing alignments... [33.48s] Deallocating buffers... [0.018s] Loading trace points... [0.056s] Sorting trace points... [1.357s] Computing alignments... [33.362s] Deallocating buffers... [0.018s] Loading trace points... [0s] Sorting trace points... [1.312s] Computing alignments... [33.405s] Deallocating buffers... [0.015s] Loading trace points... [0s] Sorting trace points... [0.951s] Computing alignments... [33.197s] Deallocating buffers... [0.016s] Loading trace points... [0s] [535.441s] Deallocating reference... [0.059s] Loading reference sequences... [29.399s] Masking reference... [30.87s] Initializing dictionary... [0.077s] Initializing temporary storage... [0.006s] Building reference histograms... [33.171s] Allocating buffers... [0.001s] Processing query block 1, reference block 7/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.165s] Building query seed array... [2.156s] Computing hash join... [6.919s] Masking low complexity seeds... [0.606s] Searching alignments... [85.091s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 1/2, index chunk 2/4. Building reference seed array... [13.134s] Building query seed array... [3.159s] Computing hash join... [6.391s] Masking low complexity seeds... [0.295s] Searching alignments... [58.254s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.947s] Building query seed array... [2.757s] Computing hash join... [6.795s] Masking low complexity seeds... [0.3s] Searching alignments... [49.271s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 1/2, index chunk 4/4. Building reference seed array... [11.179s] Building query seed array... [2.611s] Computing hash join... [6.507s] Masking low complexity seeds... [0.27s] Searching alignments... [40.342s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.585s] Building query seed array... [2.138s] Computing hash join... [6.043s] Masking low complexity seeds... [0.245s] Searching alignments... [46.316s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 2/2, index chunk 2/4. Building reference seed array... [13.046s] Building query seed array... [2.45s] Computing hash join... [6.361s] Masking low complexity seeds... [0.26s] Searching alignments... [34.14s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 2/2, index chunk 3/4. Building reference seed array... [14.141s] Building query seed array... [2.586s] Computing hash join... [6.445s] Masking low complexity seeds... [0.263s] Searching alignments... [39.639s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.561s] Building query seed array... [2.19s] Computing hash join... [6.443s] Masking low complexity seeds... [0.261s] Searching alignments... [33.185s] Deallocating memory... [0s] Deallocating buffers... [2.367s] Clearing query masking... [1.633s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [6.333s] Sorting trace points... [1.286s] Computing alignments... [30.936s] Deallocating buffers... [0.014s] Loading trace points... [0.051s] Sorting trace points... [1.098s] Computing alignments... [30.808s] Deallocating buffers... [0.016s] Loading trace points... [0.059s] Sorting trace points... [0.985s] Computing alignments... [30.956s] Deallocating buffers... [0.014s] Loading trace points... [0.069s] Sorting trace points... [1.164s] Computing alignments... [30.959s] Deallocating buffers... [0.014s] Loading trace points... [0.05s] Sorting trace points... [1.176s] Computing alignments... [30.688s] Deallocating buffers... [0.017s] Loading trace points... [0.082s] Sorting trace points... [1.076s] Computing alignments... [31.152s] Deallocating buffers... [0.017s] Loading trace points... [0.051s] Sorting trace points... [1.124s] Computing alignments... [30.463s] Deallocating buffers... [0.014s] Loading trace points... [0.049s] Sorting trace points... [1.17s] Computing alignments... [30.567s] Deallocating buffers... [0.013s] Loading trace points... [0.088s] Sorting trace points... [1.256s] Computing alignments... [31.896s] Deallocating buffers... [0.014s] Loading trace points... [0.044s] Sorting trace points... [1.331s] Computing alignments... [33.394s] Deallocating buffers... [0.015s] Loading trace points... [0.004s] Sorting trace points... [1.318s] Computing alignments... [33.528s] Deallocating buffers... [0.015s] Loading trace points... [0.043s] Sorting trace points... [1.329s] Computing alignments... [33.523s] Deallocating buffers... [0.018s] Loading trace points... [0.048s] Sorting trace points... [1.302s] Computing alignments... [33.756s] Deallocating buffers... [0.022s] Loading trace points... [0.001s] Sorting trace points... [1.513s] Computing alignments... [33.705s] Deallocating buffers... [0.263s] Loading trace points... [0.056s] Sorting trace points... [1.334s] Computing alignments... [33.619s] Deallocating buffers... [0.015s] Loading trace points... [0s] Sorting trace points... [1.34s] Computing alignments... [33.493s] Deallocating buffers... [0.015s] Loading trace points... [0s] [540.958s] Deallocating reference... [0.056s] Loading reference sequences... [29.168s] Masking reference... [32.1s] Initializing dictionary... [0.077s] Initializing temporary storage... [0.006s] Building reference histograms... [32.376s] Allocating buffers... [0s] Processing query block 1, reference block 8/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.068s] Building query seed array... [2.157s] Computing hash join... [7.145s] Masking low complexity seeds... [0.254s] Searching alignments... [81.707s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.608s] Building query seed array... [3.131s] Computing hash join... [6.713s] Masking low complexity seeds... [0.256s] Searching alignments... [58.005s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 1/2, index chunk 3/4. Building reference seed array... [14.009s] Building query seed array... [2.726s] Computing hash join... [6.963s] Masking low complexity seeds... [0.25s] Searching alignments... [48.741s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.208s] Building query seed array... [2.548s] Computing hash join... [6.385s] Masking low complexity seeds... [0.31s] Searching alignments... [41.864s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.448s] Building query seed array... [2.069s] Computing hash join... [6.249s] Masking low complexity seeds... [0.254s] Searching alignments... [45.328s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.588s] Building query seed array... [2.387s] Computing hash join... [6.597s] Masking low complexity seeds... [0.236s] Searching alignments... [33.496s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.385s] Building query seed array... [2.522s] Computing hash join... [6.712s] Masking low complexity seeds... [0.246s] Searching alignments... [39.613s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.675s] Building query seed array... [2.149s] Computing hash join... [6.737s] Masking low complexity seeds... [0.232s] Searching alignments... [31.753s] Deallocating memory... [0s] Deallocating buffers... [2.063s] Clearing query masking... [1.667s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [6.504s] Sorting trace points... [1.303s] Computing alignments... [31.006s] Deallocating buffers... [0.014s] Loading trace points... [0.069s] Sorting trace points... [1.2s] Computing alignments... [30.816s] Deallocating buffers... [0.13s] Loading trace points... [0.054s] Sorting trace points... [1.214s] Computing alignments... [31.072s] Deallocating buffers... [0.014s] Loading trace points... [0.083s] Sorting trace points... [1.185s] Computing alignments... [30.975s] Deallocating buffers... [0.013s] Loading trace points... [0.045s] Sorting trace points... [1.195s] Computing alignments... [30.657s] Deallocating buffers... [0.017s] Loading trace points... [0.06s] Sorting trace points... [1.212s] Computing alignments... [31.126s] Deallocating buffers... [0.014s] Loading trace points... [0.08s] Sorting trace points... [1.081s] Computing alignments... [30.455s] Deallocating buffers... [0.02s] Loading trace points... [0.062s] Sorting trace points... [1.189s] Computing alignments... [30.485s] Deallocating buffers... [0.013s] Loading trace points... [0.07s] Sorting trace points... [1.18s] Computing alignments... [31.812s] Deallocating buffers... [0.017s] Loading trace points... [0.045s] Sorting trace points... [1.306s] Computing alignments... [33.428s] Deallocating buffers... [0.015s] Loading trace points... [0.055s] Sorting trace points... [0.978s] Computing alignments... [33.663s] Deallocating buffers... [0.016s] Loading trace points... [0.053s] Sorting trace points... [1.305s] Computing alignments... [33.582s] Deallocating buffers... [0.015s] Loading trace points... [0.182s] Sorting trace points... [1.371s] Computing alignments... [33.796s] Deallocating buffers... [0.016s] Loading trace points... [0.001s] Sorting trace points... [1.401s] Computing alignments... [33.648s] Deallocating buffers... [0.018s] Loading trace points... [0.072s] Sorting trace points... [1.326s] Computing alignments... [33.745s] Deallocating buffers... [0.018s] Loading trace points... [0s] Sorting trace points... [1.247s] Computing alignments... [33.522s] Deallocating buffers... [0.015s] Loading trace points... [0s] [541.539s] Deallocating reference... [0.058s] Loading reference sequences... [29.374s] Masking reference... [30.894s] Initializing dictionary... [0.077s] Initializing temporary storage... [0.006s] Building reference histograms... [32.98s] Allocating buffers... [0s] Processing query block 1, reference block 9/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.149s] Building query seed array... [2.141s] Computing hash join... [6.945s] Masking low complexity seeds... [0.254s] Searching alignments... [82.533s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.647s] Building query seed array... [3.173s] Computing hash join... [6.567s] Masking low complexity seeds... [0.286s] Searching alignments... [58.413s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.649s] Building query seed array... [2.767s] Computing hash join... [6.745s] Masking low complexity seeds... [0.256s] Searching alignments... [47.267s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.313s] Building query seed array... [2.389s] Computing hash join... [7.301s] Masking low complexity seeds... [0.273s] Searching alignments... [40.066s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.736s] Building query seed array... [2.262s] Computing hash join... [6.379s] Masking low complexity seeds... [0.242s] Searching alignments... [46.339s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.575s] Building query seed array... [2.579s] Computing hash join... [6.598s] Masking low complexity seeds... [0.234s] Searching alignments... [32.581s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.773s] Building query seed array... [2.521s] Computing hash join... [6.555s] Masking low complexity seeds... [0.294s] Searching alignments... [39.653s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.654s] Building query seed array... [2.172s] Computing hash join... [6.752s] Masking low complexity seeds... [0.273s] Searching alignments... [33.098s] Deallocating memory... [0s] Deallocating buffers... [1.992s] Clearing query masking... [1.699s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [6.774s] Sorting trace points... [1.249s] Computing alignments... [30.904s] Deallocating buffers... [0.013s] Loading trace points... [0.108s] Sorting trace points... [1.053s] Computing alignments... [30.783s] Deallocating buffers... [0.08s] Loading trace points... [0.001s] Sorting trace points... [1.277s] Computing alignments... [30.861s] Deallocating buffers... [0.017s] Loading trace points... [0.093s] Sorting trace points... [0.924s] Computing alignments... [30.89s] Deallocating buffers... [0.016s] Loading trace points... [0.061s] Sorting trace points... [1.189s] Computing alignments... [30.721s] Deallocating buffers... [0.013s] Loading trace points... [0.094s] Sorting trace points... [1.331s] Computing alignments... [31.204s] Deallocating buffers... [0.101s] Loading trace points... [0.056s] Sorting trace points... [1.177s] Computing alignments... [30.527s] Deallocating buffers... [0.013s] Loading trace points... [0.305s] Sorting trace points... [1.247s] Computing alignments... [30.593s] Deallocating buffers... [0.013s] Loading trace points... [0.081s] Sorting trace points... [1.272s] Computing alignments... [31.983s] Deallocating buffers... [0.014s] Loading trace points... [0.123s] Sorting trace points... [1.292s] Computing alignments... [33.487s] Deallocating buffers... [0.015s] Loading trace points... [0.079s] Sorting trace points... [1.247s] Computing alignments... [33.641s] Deallocating buffers... [0.015s] Loading trace points... [0.087s] Sorting trace points... [1.234s] Computing alignments... [33.59s] Deallocating buffers... [0.018s] Loading trace points... [0.061s] Sorting trace points... [1.387s] Computing alignments... [33.787s] Deallocating buffers... [0.031s] Loading trace points... [0.079s] Sorting trace points... [1.311s] Computing alignments... [33.669s] Deallocating buffers... [0.015s] Loading trace points... [0.086s] Sorting trace points... [1.273s] Computing alignments... [33.767s] Deallocating buffers... [0.014s] Loading trace points... [0s] Sorting trace points... [1.241s] Computing alignments... [33.567s] Deallocating buffers... [0.018s] Loading trace points... [0s] [542.479s] Deallocating reference... [0.059s] Loading reference sequences... [29.127s] Masking reference... [30.899s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.006s] Building reference histograms... [32.847s] Allocating buffers... [0s] Processing query block 1, reference block 10/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.675s] Building query seed array... [2.192s] Computing hash join... [6.656s] Masking low complexity seeds... [0.264s] Searching alignments... [84.098s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 1/2, index chunk 2/4. Building reference seed array... [13.242s] Building query seed array... [3.17s] Computing hash join... [6.898s] Masking low complexity seeds... [0.259s] Searching alignments... [58.644s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.877s] Building query seed array... [2.747s] Computing hash join... [7.014s] Masking low complexity seeds... [0.351s] Searching alignments... [46.099s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.835s] Building query seed array... [2.502s] Computing hash join... [6.462s] Masking low complexity seeds... [0.296s] Searching alignments... [40.451s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.767s] Building query seed array... [2.094s] Computing hash join... [6.555s] Masking low complexity seeds... [0.288s] Searching alignments... [46.213s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 2/2, index chunk 2/4. Building reference seed array... [13.047s] Building query seed array... [2.698s] Computing hash join... [6.911s] Masking low complexity seeds... [0.248s] Searching alignments... [33.436s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.569s] Building query seed array... [2.526s] Computing hash join... [6.78s] Masking low complexity seeds... [0.315s] Searching alignments... [39.688s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.215s] Building query seed array... [2.125s] Computing hash join... [6.824s] Masking low complexity seeds... [0.241s] Searching alignments... [32.409s] Deallocating memory... [0s] Deallocating buffers... [2.213s] Clearing query masking... [1.68s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [6.414s] Sorting trace points... [1.281s] Computing alignments... [31.051s] Deallocating buffers... [0.016s] Loading trace points... [0.058s] Sorting trace points... [1.331s] Computing alignments... [30.978s] Deallocating buffers... [0.262s] Loading trace points... [0.047s] Sorting trace points... [1.258s] Computing alignments... [31.137s] Deallocating buffers... [0.013s] Loading trace points... [0.078s] Sorting trace points... [1.143s] Computing alignments... [31.148s] Deallocating buffers... [0.014s] Loading trace points... [0.07s] Sorting trace points... [1.162s] Computing alignments... [30.843s] Deallocating buffers... [0.013s] Loading trace points... [0.057s] Sorting trace points... [1.223s] Computing alignments... [31.331s] Deallocating buffers... [0.014s] Loading trace points... [0.062s] Sorting trace points... [1.192s] Computing alignments... [30.627s] Deallocating buffers... [0.017s] Loading trace points... [0.07s] Sorting trace points... [0.851s] Computing alignments... [30.7s] Deallocating buffers... [0.015s] Loading trace points... [0.063s] Sorting trace points... [1.29s] Computing alignments... [31.95s] Deallocating buffers... [0.017s] Loading trace points... [0.002s] Sorting trace points... [1.307s] Computing alignments... [33.507s] Deallocating buffers... [0.038s] Loading trace points... [0.083s] Sorting trace points... [1.087s] Computing alignments... [33.783s] Deallocating buffers... [0.015s] Loading trace points... [0.001s] Sorting trace points... [1.304s] Computing alignments... [33.708s] Deallocating buffers... [0.018s] Loading trace points... [0.063s] Sorting trace points... [0.921s] Computing alignments... [34.043s] Deallocating buffers... [0.025s] Loading trace points... [0.117s] Sorting trace points... [1.37s] Computing alignments... [33.81s] Deallocating buffers... [0.015s] Loading trace points... [0.045s] Sorting trace points... [1.345s] Computing alignments... [33.855s] Deallocating buffers... [0.015s] Loading trace points... [0s] Sorting trace points... [1.298s] Computing alignments... [33.678s] Deallocating buffers... [0.015s] Loading trace points... [0s] [544.165s] Deallocating reference... [0.058s] Loading reference sequences... [29.344s] Masking reference... [30.903s] Initializing dictionary... [0.077s] Initializing temporary storage... [0.006s] Building reference histograms... [33.048s] Allocating buffers... [0s] Processing query block 1, reference block 11/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.13s] Building query seed array... [2.214s] Computing hash join... [6.97s] Masking low complexity seeds... [0.254s] Searching alignments... [78.39s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 1/2, index chunk 2/4. Building reference seed array... [13.089s] Building query seed array... [3.135s] Computing hash join... [6.99s] Masking low complexity seeds... [0.254s] Searching alignments... [59.532s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.976s] Building query seed array... [2.815s] Computing hash join... [7.106s] Masking low complexity seeds... [0.268s] Searching alignments... [46.45s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.862s] Building query seed array... [2.355s] Computing hash join... [6.499s] Masking low complexity seeds... [0.294s] Searching alignments... [39.264s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.532s] Building query seed array... [2.223s] Computing hash join... [6.273s] Masking low complexity seeds... [0.267s] Searching alignments... [44.625s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 2/2, index chunk 2/4. Building reference seed array... [13.4s] Building query seed array... [2.435s] Computing hash join... [6.958s] Masking low complexity seeds... [0.24s] Searching alignments... [32.552s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.606s] Building query seed array... [2.694s] Computing hash join... [7.075s] Masking low complexity seeds... [0.247s] Searching alignments... [38.954s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.842s] Building query seed array... [2.205s] Computing hash join... [6.954s] Masking low complexity seeds... [0.268s] Searching alignments... [31.675s] Deallocating memory... [0s] Deallocating buffers... [2.17s] Clearing query masking... [1.677s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [6.618s] Sorting trace points... [1.251s] Computing alignments... [30.762s] Deallocating buffers... [0.016s] Loading trace points... [0.066s] Sorting trace points... [1.376s] Computing alignments... [30.935s] Deallocating buffers... [0.3s] Loading trace points... [0.145s] Sorting trace points... [1.184s] Computing alignments... [30.776s] Deallocating buffers... [0.017s] Loading trace points... [0.105s] Sorting trace points... [1.229s] Computing alignments... [30.763s] Deallocating buffers... [0.017s] Loading trace points... [0.042s] Sorting trace points... [1.184s] Computing alignments... [30.525s] Deallocating buffers... [0.017s] Loading trace points... [0.05s] Sorting trace points... [1.092s] Computing alignments... [31.111s] Deallocating buffers... [0.016s] Loading trace points... [0.083s] Sorting trace points... [1.149s] Computing alignments... [30.465s] Deallocating buffers... [0.013s] Loading trace points... [0.052s] Sorting trace points... [1.187s] Computing alignments... [30.428s] Deallocating buffers... [0.042s] Loading trace points... [0.061s] Sorting trace points... [1.217s] Computing alignments... [31.786s] Deallocating buffers... [0.014s] Loading trace points... [0.1s] Sorting trace points... [1.049s] Computing alignments... [33.301s] Deallocating buffers... [0.017s] Loading trace points... [0.063s] Sorting trace points... [1.081s] Computing alignments... [33.36s] Deallocating buffers... [0.015s] Loading trace points... [0.078s] Sorting trace points... [0.975s] Computing alignments... [33.388s] Deallocating buffers... [0.016s] Loading trace points... [0.039s] Sorting trace points... [1.345s] Computing alignments... [33.723s] Deallocating buffers... [0.075s] Loading trace points... [0.073s] Sorting trace points... [1.227s] Computing alignments... [33.65s] Deallocating buffers... [0.061s] Loading trace points... [0.057s] Sorting trace points... [1.108s] Computing alignments... [33.667s] Deallocating buffers... [0.017s] Loading trace points... [0s] Sorting trace points... [1.376s] Computing alignments... [33.471s] Deallocating buffers... [0.116s] Loading trace points... [0s] [539.816s] Deallocating reference... [0.064s] Loading reference sequences... [34.519s] Masking reference... [31.165s] Initializing dictionary... [0.077s] Initializing temporary storage... [0.006s] Building reference histograms... [32.61s] Allocating buffers... [0s] Processing query block 1, reference block 12/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.347s] Building query seed array... [2.182s] Computing hash join... [7.063s] Masking low complexity seeds... [0.249s] Searching alignments... [83.217s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.72s] Building query seed array... [3.134s] Computing hash join... [7.327s] Masking low complexity seeds... [0.264s] Searching alignments... [57.186s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.839s] Building query seed array... [2.841s] Computing hash join... [7.177s] Masking low complexity seeds... [0.249s] Searching alignments... [47.058s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.677s] Building query seed array... [2.414s] Computing hash join... [6.708s] Masking low complexity seeds... [0.297s] Searching alignments... [40.158s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.727s] Building query seed array... [2.104s] Computing hash join... [6.703s] Masking low complexity seeds... [0.276s] Searching alignments... [45.347s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 2/2, index chunk 2/4. Building reference seed array... [13.604s] Building query seed array... [2.611s] Computing hash join... [6.789s] Masking low complexity seeds... [0.266s] Searching alignments... [33.28s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.402s] Building query seed array... [2.433s] Computing hash join... [6.815s] Masking low complexity seeds... [0.327s] Searching alignments... [39.395s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.537s] Building query seed array... [2.05s] Computing hash join... [6.215s] Masking low complexity seeds... [0.241s] Searching alignments... [32.077s] Deallocating memory... [0s] Deallocating buffers... [2.046s] Clearing query masking... [1.672s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [6.467s] Sorting trace points... [1.196s] Computing alignments... [31.019s] Deallocating buffers... [0.016s] Loading trace points... [0.064s] Sorting trace points... [1.213s] Computing alignments... [30.942s] Deallocating buffers... [0.013s] Loading trace points... [0.073s] Sorting trace points... [1.182s] Computing alignments... [31.168s] Deallocating buffers... [0.017s] Loading trace points... [0.092s] Sorting trace points... [1.178s] Computing alignments... [31.091s] Deallocating buffers... [0.014s] Loading trace points... [0.066s] Sorting trace points... [1.188s] Computing alignments... [30.782s] Deallocating buffers... [0.013s] Loading trace points... [0.068s] Sorting trace points... [0.942s] Computing alignments... [31.459s] Deallocating buffers... [0.015s] Loading trace points... [0.531s] Sorting trace points... [1.231s] Computing alignments... [30.779s] Deallocating buffers... [0.016s] Loading trace points... [0.055s] Sorting trace points... [1.075s] Computing alignments... [30.811s] Deallocating buffers... [0.016s] Loading trace points... [0.061s] Sorting trace points... [1.265s] Computing alignments... [32.2s] Deallocating buffers... [0.014s] Loading trace points... [0.041s] Sorting trace points... [0.996s] Computing alignments... [33.517s] Deallocating buffers... [0.017s] Loading trace points... [0.073s] Sorting trace points... [0.967s] Computing alignments... [33.792s] Deallocating buffers... [0.017s] Loading trace points... [0.078s] Sorting trace points... [1.188s] Computing alignments... [33.66s] Deallocating buffers... [0.015s] Loading trace points... [0.067s] Sorting trace points... [1.327s] Computing alignments... [34.102s] Deallocating buffers... [0.026s] Loading trace points... [0.074s] Sorting trace points... [1.575s] Computing alignments... [33.852s] Deallocating buffers... [0.278s] Loading trace points... [0.049s] Sorting trace points... [1.345s] Computing alignments... [33.842s] Deallocating buffers... [0.015s] Loading trace points... [0s] Sorting trace points... [1.338s] Computing alignments... [33.608s] Deallocating buffers... [0.018s] Loading trace points... [0s] [544.454s] Deallocating reference... [0.176s] Loading reference sequences... [30.069s] Masking reference... [30.876s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.006s] Building reference histograms... [32.657s] Allocating buffers... [0.001s] Processing query block 1, reference block 13/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.599s] Building query seed array... [2.232s] Computing hash join... [6.942s] Masking low complexity seeds... [0.515s] Searching alignments... [84.412s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 1/2, index chunk 2/4. Building reference seed array... [13.304s] Building query seed array... [2.96s] Computing hash join... [6.478s] Masking low complexity seeds... [0.265s] Searching alignments... [56.811s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.911s] Building query seed array... [3.058s] Computing hash join... [6.725s] Masking low complexity seeds... [0.278s] Searching alignments... [49.039s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 1/2, index chunk 4/4. Building reference seed array... [11.211s] Building query seed array... [2.466s] Computing hash join... [5.771s] Masking low complexity seeds... [0.324s] Searching alignments... [41.392s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 2/2, index chunk 1/4. Building reference seed array... [11.076s] Building query seed array... [2.231s] Computing hash join... [6.052s] Masking low complexity seeds... [0.319s] Searching alignments... [47.174s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 2/2, index chunk 2/4. Building reference seed array... [13.177s] Building query seed array... [2.548s] Computing hash join... [6.327s] Masking low complexity seeds... [0.309s] Searching alignments... [33.023s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 2/2, index chunk 3/4. Building reference seed array... [14.218s] Building query seed array... [2.583s] Computing hash join... [6.57s] Masking low complexity seeds... [0.266s] Searching alignments... [40.863s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 2/2, index chunk 4/4. Building reference seed array... [11.193s] Building query seed array... [2.194s] Computing hash join... [5.749s] Masking low complexity seeds... [0.243s] Searching alignments... [32.743s] Deallocating memory... [0s] Deallocating buffers... [2.886s] Clearing query masking... [1.599s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [6.374s] Sorting trace points... [1.301s] Computing alignments... [31.009s] Deallocating buffers... [0.016s] Loading trace points... [0.057s] Sorting trace points... [1.375s] Computing alignments... [31.165s] Deallocating buffers... [0.278s] Loading trace points... [0.056s] Sorting trace points... [1.251s] Computing alignments... [31.065s] Deallocating buffers... [0.017s] Loading trace points... [0.064s] Sorting trace points... [1.173s] Computing alignments... [30.964s] Deallocating buffers... [0.013s] Loading trace points... [0.056s] Sorting trace points... [1.211s] Computing alignments... [30.749s] Deallocating buffers... [0.013s] Loading trace points... [0.044s] Sorting trace points... [1.057s] Computing alignments... [31.192s] Deallocating buffers... [0.088s] Loading trace points... [0.601s] Sorting trace points... [1.26s] Computing alignments... [30.501s] Deallocating buffers... [0.013s] Loading trace points... [0.075s] Sorting trace points... [1.177s] Computing alignments... [30.503s] Deallocating buffers... [0.013s] Loading trace points... [0.063s] Sorting trace points... [1.242s] Computing alignments... [31.83s] Deallocating buffers... [0.014s] Loading trace points... [0.003s] Sorting trace points... [1.102s] Computing alignments... [33.348s] Deallocating buffers... [0.017s] Loading trace points... [0.067s] Sorting trace points... [1.016s] Computing alignments... [33.51s] Deallocating buffers... [0.076s] Loading trace points... [0.048s] Sorting trace points... [1.296s] Computing alignments... [33.509s] Deallocating buffers... [0.018s] Loading trace points... [0.037s] Sorting trace points... [1.038s] Computing alignments... [33.846s] Deallocating buffers... [0.016s] Loading trace points... [0.071s] Sorting trace points... [1.33s] Computing alignments... [33.808s] Deallocating buffers... [0.09s] Loading trace points... [0.07s] Sorting trace points... [1.364s] Computing alignments... [33.756s] Deallocating buffers... [0.015s] Loading trace points... [0s] Sorting trace points... [1.289s] Computing alignments... [33.524s] Deallocating buffers... [0.056s] Loading trace points... [0s] [542.399s] Deallocating reference... [0.056s] Loading reference sequences... [23.819s] Masking reference... [25.057s] Initializing dictionary... [0.062s] Initializing temporary storage... [0.006s] Building reference histograms... [26.358s] Allocating buffers... [0s] Processing query block 1, reference block 14/14, shape 1/2, index chunk 1/4. Building reference seed array... [8.391s] Building query seed array... [2.208s] Computing hash join... [5.163s] Masking low complexity seeds... [0.25s] Searching alignments... [67.021s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 1/2, index chunk 2/4. Building reference seed array... [10.817s] Building query seed array... [3.134s] Computing hash join... [5.338s] Masking low complexity seeds... [0.247s] Searching alignments... [47.147s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 1/2, index chunk 3/4. Building reference seed array... [11.225s] Building query seed array... [2.741s] Computing hash join... [4.968s] Masking low complexity seeds... [0.248s] Searching alignments... [38.874s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 1/2, index chunk 4/4. Building reference seed array... [8.67s] Building query seed array... [2.432s] Computing hash join... [5.147s] Masking low complexity seeds... [0.246s] Searching alignments... [33.075s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 2/2, index chunk 1/4. Building reference seed array... [8.324s] Building query seed array... [2.134s] Computing hash join... [5.106s] Masking low complexity seeds... [0.241s] Searching alignments... [36.412s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 2/2, index chunk 2/4. Building reference seed array... [10.701s] Building query seed array... [2.501s] Computing hash join... [4.841s] Masking low complexity seeds... [0.231s] Searching alignments... [26.981s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 2/2, index chunk 3/4. Building reference seed array... [11.149s] Building query seed array... [2.685s] Computing hash join... [5.11s] Masking low complexity seeds... [0.312s] Searching alignments... [31.111s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 2/2, index chunk 4/4. Building reference seed array... [8.655s] Building query seed array... [2.123s] Computing hash join... [4.73s] Masking low complexity seeds... [0.297s] Searching alignments... [26.732s] Deallocating memory... [0s] Deallocating buffers... [1.352s] Clearing query masking... [1.587s] Opening temporary output file... [0.002s] Computing alignments... Loading trace points... [10.461s] Sorting trace points... [2.122s] Computing alignments... [49.14s] Deallocating buffers... [0.021s] Loading trace points... [0.099s] Sorting trace points... [1.821s] Computing alignments... [49.45s] Deallocating buffers... [0.295s] Loading trace points... [0.177s] Sorting trace points... [2.063s] Computing alignments... [49.13s] Deallocating buffers... [0.021s] Loading trace points... [0.095s] Sorting trace points... [2.1s] Computing alignments... [48.559s] Deallocating buffers... [0.298s] Loading trace points... [0.141s] Sorting trace points... [1.934s] Computing alignments... [51.834s] Deallocating buffers... [0.027s] Loading trace points... [0.119s] Sorting trace points... [2.183s] Computing alignments... [53.287s] Deallocating buffers... [0.023s] Loading trace points... [0.125s] Sorting trace points... [2.383s] Computing alignments... [53.593s] Deallocating buffers... [0.414s] Loading trace points... [0s] Sorting trace points... [2.179s] Computing alignments... [53.149s] Deallocating buffers... [0.055s] Loading trace points... [0s] [437.401s] Deallocating reference... [0.05s] Loading reference sequences... [0.1s] Deallocating buffers... [0s] Joining output blocks... Joining output blocks... [2159.95s] [2159.95s] Deallocating queries... [0.078s] Loading query sequences... [0s] Closing the input file... [0s] Closing the output file... Loading dictionary... [3.892s] [4.954s] Closing the database... [0s] Cleaning up... [0s] Total time = 18937.2s Reported 2418538696 pairwise alignments, 2418538696 HSPs. 13737353 queries aligned. DIAMOND BLASTx on /gscratch/srlab/sam/data/P_verrucosa/RNAseq/E1_R2.fastp-trim.20230215.fq.gz complete: E1_R2.blastx.meganized.daa Now MEGANizing E1_R2.blastx.meganized.daa Version MEGAN Community Edition (version 6.22.0, built 19 Feb 2022) Author(s) Daniel H. Huson Copyright (C) 2022 Daniel H. Huson. This program comes with ABSOLUTELY NO WARRANTY. Java version: 17.0.2 Functional classifications to use: EC, EGGNOG, GTDB, INTERPRO2GO, SEED Loading ncbi.map: 2,396,736 Loading ncbi.tre: 2,396,740 Loading ec.map: 8,200 Loading ec.tre: 8,204 Loading eggnog.map: 30,875 Loading eggnog.tre: 30,986 Loading gtdb.map: 240,103 Loading gtdb.tre: 240,107 Loading interpro2go.map: 14,242 Loading interpro2go.tre: 28,907 Loading seed.map: 961 Loading seed.tre: 962 Meganizing: E1_R2.blastx.meganized.daa Meganizing init Annotating DAA file using FAST mode (accession database and first accession per line) Annotating references 10% 20% 30% 40% 50% 60% 70% 100% (549.3s) Writing 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (1.3s) Binning reads Initializing... Initializing binning... Using 'Naive LCA' algorithm for binning: Taxonomy Using Best-Hit algorithm for binning: SEED Using Best-Hit algorithm for binning: EGGNOG Using 'Naive LCA' algorithm for binning: GTDB Using Best-Hit algorithm for binning: EC Using Best-Hit algorithm for binning: INTERPRO2GO Binning reads... Binning reads Analyzing alignments 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (4,539.0s) Total reads: 13,737,353 With hits: 13,737,353 Alignments: 2,416,302,672 Assig. Taxonomy: 12,837,261 Assig. SEED: 103,744 Assig. EGGNOG: 56,002 Assig. GTDB: 395,793 Assig. EC: 2,046,723 Assig. INTERPRO2GO: 1,160,089 MinSupport set to: 6868 Binning reads Applying min-support & disabled filter to Taxonomy... 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (0.4s) Min-supp. changes: 4,142 Binning reads Applying min-support & disabled filter to GTDB... 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (11.3s) Min-supp. changes: 3,067 Binning reads Writing classification tables 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (35.0s) Binning reads Syncing 100% (0.5s) Class. Taxonomy: 74 Class. SEED: 506 Class. EGGNOG: 1,762 Class. GTDB: 16 Class. EC: 2,379 Class. INTERPRO2GO: 7,895 Total time: 5,145s Peak memory: 38.7 of 195.3G MEGANization of E1_R2.blastx.meganized.daa completed. Generating MD5 checksum for /gscratch/srlab/sam/data/P_verrucosa/RNAseq/E2_R1.fastp-trim.20230215.fq.gz... 28e9342cd8726e997f8a2f6615dea1bf /gscratch/srlab/sam/data/P_verrucosa/RNAseq/E2_R1.fastp-trim.20230215.fq.gz Running DIAMOND BLASTx on /gscratch/srlab/sam/data/P_verrucosa/RNAseq/E2_R1.fastp-trim.20230215.fq.gz. diamond v2.1.1.155 (C) Max Planck Society for the Advancement of Science Documentation, support and updates available at http://www.diamondsearch.org Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021) #CPU threads: 40 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: Percentage range of top alignment score to report hits: 5 Opening the database... [0.361s] Database: /gscratch/srlab/blastdbs/20230215-ncbi-nr/20230215-ncbi-nr.dmnd (type: Diamond database, sequences: 526308523, letters: 207134680681) Block size = 15000000000 Opening the input file... [0.701s] Opening the output file... [0s] Loading query sequences... [73.25s] Masking queries... [18.338s] Algorithm: Double-indexed Building query histograms... [17.103s] Loading reference sequences... [255.002s] Masking reference... [32.155s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.008s] Building reference histograms... [32.365s] Allocating buffers... [0.001s] Processing query block 1, reference block 1/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.662s] Building query seed array... [2.05s] Computing hash join... [6.521s] Masking low complexity seeds... [0.415s] Searching alignments... [76.136s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.622s] Building query seed array... [2.756s] Computing hash join... [6.061s] Masking low complexity seeds... [0.239s] Searching alignments... [49.343s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.526s] Building query seed array... [2.631s] Computing hash join... [5.8s] Masking low complexity seeds... [0.248s] Searching alignments... [42.459s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.341s] Building query seed array... [2.254s] Computing hash join... [5.92s] Masking low complexity seeds... [0.239s] Searching alignments... [37.624s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.867s] Building query seed array... [1.992s] Computing hash join... [5.768s] Masking low complexity seeds... [0.238s] Searching alignments... [38.089s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.808s] Building query seed array... [2.322s] Computing hash join... [5.959s] Masking low complexity seeds... [0.222s] Searching alignments... [30.106s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.245s] Building query seed array... [2.456s] Computing hash join... [5.863s] Masking low complexity seeds... [0.237s] Searching alignments... [33.592s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.743s] Building query seed array... [2.257s] Computing hash join... [5.74s] Masking low complexity seeds... [0.205s] Searching alignments... [30.222s] Deallocating memory... [0s] Deallocating buffers... [1.765s] Clearing query masking... [1.707s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [6.141s] Sorting trace points... [1.198s] Computing alignments... [30.335s] Deallocating buffers... [0.015s] Loading trace points... [0.086s] Sorting trace points... [1.054s] Computing alignments... [30.503s] Deallocating buffers... [0.013s] Loading trace points... [0.051s] Sorting trace points... [0.824s] Computing alignments... [30.32s] Deallocating buffers... [0.015s] Loading trace points... [0.05s] Sorting trace points... [1.156s] Computing alignments... [30.089s] Deallocating buffers... [0.013s] Loading trace points... [0.041s] Sorting trace points... [1.132s] Computing alignments... [30.433s] Deallocating buffers... [0.013s] Loading trace points... [0.074s] Sorting trace points... [1.144s] Computing alignments... [30.618s] Deallocating buffers... [0.013s] Loading trace points... [0.091s] Sorting trace points... [1.15s] Computing alignments... [30.248s] Deallocating buffers... [0.016s] Loading trace points... [0.083s] Sorting trace points... [1.178s] Computing alignments... [30.017s] Deallocating buffers... [0.017s] Loading trace points... [0.068s] Sorting trace points... [1.183s] Computing alignments... [30.783s] Deallocating buffers... [0.013s] Loading trace points... [0.055s] Sorting trace points... [1.224s] Computing alignments... [31.529s] Deallocating buffers... [0.013s] Loading trace points... [0.065s] Sorting trace points... [0.984s] Computing alignments... [31.657s] Deallocating buffers... [0.014s] Loading trace points... [0.035s] Sorting trace points... [1.053s] Computing alignments... [31.479s] Deallocating buffers... [0.014s] Loading trace points... [0.05s] Sorting trace points... [1.139s] Computing alignments... [31.863s] Deallocating buffers... [0.016s] Loading trace points... [0.061s] Sorting trace points... [0.972s] Computing alignments... [31.626s] Deallocating buffers... [0.015s] Loading trace points... [0.076s] Sorting trace points... [1.189s] Computing alignments... [31.689s] Deallocating buffers... [0.013s] Loading trace points... [0s] Sorting trace points... [1.165s] Computing alignments... [31.255s] Deallocating buffers... [0.019s] Loading trace points... [0s] [519.589s] Deallocating reference... [0.057s] Loading reference sequences... [33.578s] Masking reference... [31.178s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.008s] Building reference histograms... [32.162s] Allocating buffers... [0s] Processing query block 1, reference block 2/14, shape 1/2, index chunk 1/4. Building reference seed array... [9.97s] Building query seed array... [2.028s] Computing hash join... [6.74s] Masking low complexity seeds... [0.244s] Searching alignments... [74.434s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.512s] Building query seed array... [3.028s] Computing hash join... [6.682s] Masking low complexity seeds... [0.233s] Searching alignments... [47.315s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.79s] Building query seed array... [2.781s] Computing hash join... [6.311s] Masking low complexity seeds... [0.223s] Searching alignments... [42.382s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.347s] Building query seed array... [2.357s] Computing hash join... [6.608s] Masking low complexity seeds... [0.241s] Searching alignments... [37.933s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.54s] Building query seed array... [2.134s] Computing hash join... [6.316s] Masking low complexity seeds... [0.221s] Searching alignments... [39.273s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.823s] Building query seed array... [2.233s] Computing hash join... [6.53s] Masking low complexity seeds... [0.209s] Searching alignments... [30.054s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.791s] Building query seed array... [2.532s] Computing hash join... [6.253s] Masking low complexity seeds... [0.229s] Searching alignments... [33.728s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.236s] Building query seed array... [1.961s] Computing hash join... [6.142s] Masking low complexity seeds... [0.217s] Searching alignments... [28.897s] Deallocating memory... [0s] Deallocating buffers... [1.466s] Clearing query masking... [1.579s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [6.696s] Sorting trace points... [1.087s] Computing alignments... [29.954s] Deallocating buffers... [0.015s] Loading trace points... [0.1s] Sorting trace points... [1.145s] Computing alignments... [30.32s] Deallocating buffers... [0.016s] Loading trace points... [0.085s] Sorting trace points... [0.85s] Computing alignments... [30.058s] Deallocating buffers... [0.014s] Loading trace points... [0.05s] Sorting trace points... [0.895s] Computing alignments... [29.843s] Deallocating buffers... [0.013s] Loading trace points... [0.051s] Sorting trace points... [1.126s] Computing alignments... [30.111s] Deallocating buffers... [0.013s] Loading trace points... [0.067s] Sorting trace points... [0.894s] Computing alignments... [30.37s] Deallocating buffers... [0.014s] Loading trace points... [0.075s] Sorting trace points... [0.931s] Computing alignments... [29.985s] Deallocating buffers... [0.013s] Loading trace points... [0.099s] Sorting trace points... [1.117s] Computing alignments... [29.799s] Deallocating buffers... [0.012s] Loading trace points... [0.087s] Sorting trace points... [1.167s] Computing alignments... [30.496s] Deallocating buffers... [0.016s] Loading trace points... [0.094s] Sorting trace points... [1.188s] Computing alignments... [31.214s] Deallocating buffers... [0.017s] Loading trace points... [0.092s] Sorting trace points... [1.127s] Computing alignments... [31.179s] Deallocating buffers... [0.013s] Loading trace points... [0s] Sorting trace points... [1.178s] Computing alignments... [31.216s] Deallocating buffers... [0.016s] Loading trace points... [0.096s] Sorting trace points... [1.135s] Computing alignments... [31.496s] Deallocating buffers... [0.016s] Loading trace points... [0.097s] Sorting trace points... [0.839s] Computing alignments... [31.212s] Deallocating buffers... [0.015s] Loading trace points... [0.064s] Sorting trace points... [1.167s] Computing alignments... [31.424s] Deallocating buffers... [0.017s] Loading trace points... [0s] Sorting trace points... [1.175s] Computing alignments... [30.954s] Deallocating buffers... [0.013s] Loading trace points... [0s] [514.9s] Deallocating reference... [0.058s] Loading reference sequences... [29.446s] Masking reference... [32.2s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.008s] Building reference histograms... [32.709s] Allocating buffers... [0s] Processing query block 1, reference block 3/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.178s] Building query seed array... [2.081s] Computing hash join... [6.335s] Masking low complexity seeds... [0.23s] Searching alignments... [76.041s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.916s] Building query seed array... [2.901s] Computing hash join... [6.884s] Masking low complexity seeds... [0.268s] Searching alignments... [47.253s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 1/2, index chunk 3/4. Building reference seed array... [14.085s] Building query seed array... [2.698s] Computing hash join... [6.391s] Masking low complexity seeds... [0.24s] Searching alignments... [41.914s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.492s] Building query seed array... [2.287s] Computing hash join... [6.382s] Masking low complexity seeds... [0.235s] Searching alignments... [37.347s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.789s] Building query seed array... [2.083s] Computing hash join... [6.263s] Masking low complexity seeds... [0.234s] Searching alignments... [37.802s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.475s] Building query seed array... [2.351s] Computing hash join... [6.324s] Masking low complexity seeds... [0.232s] Searching alignments... [30.235s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.485s] Building query seed array... [2.493s] Computing hash join... [6.211s] Masking low complexity seeds... [0.22s] Searching alignments... [33.47s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.665s] Building query seed array... [2.096s] Computing hash join... [6.159s] Masking low complexity seeds... [0.206s] Searching alignments... [30.823s] Deallocating memory... [0s] Deallocating buffers... [1.588s] Clearing query masking... [1.583s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [6.057s] Sorting trace points... [1.249s] Computing alignments... [29.97s] Deallocating buffers... [0.015s] Loading trace points... [0.088s] Sorting trace points... [1.235s] Computing alignments... [30.236s] Deallocating buffers... [0.104s] Loading trace points... [0.084s] Sorting trace points... [0.936s] Computing alignments... [30.007s] Deallocating buffers... [0.014s] Loading trace points... [0.066s] Sorting trace points... [1.152s] Computing alignments... [29.902s] Deallocating buffers... [0.016s] Loading trace points... [0.061s] Sorting trace points... [0.957s] Computing alignments... [30.214s] Deallocating buffers... [0.014s] Loading trace points... [0.088s] Sorting trace points... [1.156s] Computing alignments... [30.533s] Deallocating buffers... [0.016s] Loading trace points... [0.066s] Sorting trace points... [1.145s] Computing alignments... [30.037s] Deallocating buffers... [0.015s] Loading trace points... [0.065s] Sorting trace points... [1.024s] Computing alignments... [29.894s] Deallocating buffers... [0.015s] Loading trace points... [0.066s] Sorting trace points... [1.165s] Computing alignments... [30.575s] Deallocating buffers... [0.016s] Loading trace points... [0.088s] Sorting trace points... [1.208s] Computing alignments... [31.264s] Deallocating buffers... [0.013s] Loading trace points... [0.094s] Sorting trace points... [1.159s] Computing alignments... [31.303s] Deallocating buffers... [0.013s] Loading trace points... [0.039s] Sorting trace points... [1.101s] Computing alignments... [31.267s] Deallocating buffers... [0.014s] Loading trace points... [0.066s] Sorting trace points... [1.197s] Computing alignments... [31.695s] Deallocating buffers... [0.014s] Loading trace points... [0.001s] Sorting trace points... [1.154s] Computing alignments... [31.363s] Deallocating buffers... [0.016s] Loading trace points... [0.093s] Sorting trace points... [1.194s] Computing alignments... [31.539s] Deallocating buffers... [0.017s] Loading trace points... [0s] Sorting trace points... [1.179s] Computing alignments... [31.094s] Deallocating buffers... [0.017s] Loading trace points... [0s] [516.735s] Deallocating reference... [0.063s] Loading reference sequences... [33.336s] Masking reference... [31.156s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.007s] Building reference histograms... [33.057s] Allocating buffers... [0.001s] Processing query block 1, reference block 4/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.559s] Building query seed array... [2.143s] Computing hash join... [6.748s] Masking low complexity seeds... [0.56s] Searching alignments... [74.516s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.768s] Building query seed array... [2.853s] Computing hash join... [6.972s] Masking low complexity seeds... [0.274s] Searching alignments... [49.205s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.64s] Building query seed array... [2.65s] Computing hash join... [6.42s] Masking low complexity seeds... [0.237s] Searching alignments... [43.088s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.262s] Building query seed array... [2.17s] Computing hash join... [6.854s] Masking low complexity seeds... [0.236s] Searching alignments... [38.192s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.218s] Building query seed array... [1.939s] Computing hash join... [6.582s] Masking low complexity seeds... [0.231s] Searching alignments... [38.013s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.662s] Building query seed array... [2.4s] Computing hash join... [6.711s] Masking low complexity seeds... [0.258s] Searching alignments... [30.089s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 2/2, index chunk 3/4. Building reference seed array... [12.898s] Building query seed array... [2.355s] Computing hash join... [6.705s] Masking low complexity seeds... [0.215s] Searching alignments... [33.997s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.255s] Building query seed array... [1.996s] Computing hash join... [6.224s] Masking low complexity seeds... [0.237s] Searching alignments... [29.503s] Deallocating memory... [0s] Deallocating buffers... [1.804s] Clearing query masking... [1.585s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [6.191s] Sorting trace points... [1.216s] Computing alignments... [30.079s] Deallocating buffers... [0.015s] Loading trace points... [0.086s] Sorting trace points... [1.213s] Computing alignments... [30.365s] Deallocating buffers... [0.09s] Loading trace points... [0.06s] Sorting trace points... [1.204s] Computing alignments... [30.175s] Deallocating buffers... [0.013s] Loading trace points... [0.081s] Sorting trace points... [1.149s] Computing alignments... [29.942s] Deallocating buffers... [0.013s] Loading trace points... [0.067s] Sorting trace points... [1.165s] Computing alignments... [30.166s] Deallocating buffers... [0.013s] Loading trace points... [0.074s] Sorting trace points... [1.134s] Computing alignments... [30.462s] Deallocating buffers... [0.013s] Loading trace points... [0.059s] Sorting trace points... [1.164s] Computing alignments... [29.996s] Deallocating buffers... [0.015s] Loading trace points... [0.969s] Sorting trace points... [0.995s] Computing alignments... [29.981s] Deallocating buffers... [0.014s] Loading trace points... [0.074s] Sorting trace points... [1.166s] Computing alignments... [30.701s] Deallocating buffers... [0.013s] Loading trace points... [0.057s] Sorting trace points... [1.214s] Computing alignments... [31.435s] Deallocating buffers... [0.017s] Loading trace points... [0.077s] Sorting trace points... [1.22s] Computing alignments... [31.394s] Deallocating buffers... [0.016s] Loading trace points... [0.056s] Sorting trace points... [1.208s] Computing alignments... [31.395s] Deallocating buffers... [0.016s] Loading trace points... [0.072s] Sorting trace points... [0.913s] Computing alignments... [31.655s] Deallocating buffers... [0.015s] Loading trace points... [0.001s] Sorting trace points... [1.215s] Computing alignments... [31.449s] Deallocating buffers... [0.016s] Loading trace points... [0.061s] Sorting trace points... [0.949s] Computing alignments... [31.688s] Deallocating buffers... [0.014s] Loading trace points... [0s] Sorting trace points... [1.201s] Computing alignments... [31.216s] Deallocating buffers... [0.016s] Loading trace points... [0s] [518.91s] Deallocating reference... [0.06s] Loading reference sequences... [29.328s] Masking reference... [31.707s] Initializing dictionary... [0.079s] Initializing temporary storage... [0.007s] Building reference histograms... [32.344s] Allocating buffers... [0.001s] Processing query block 1, reference block 5/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.619s] Building query seed array... [2.157s] Computing hash join... [6.455s] Masking low complexity seeds... [0.213s] Searching alignments... [76.152s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 1/2, index chunk 2/4. Building reference seed array... [13.122s] Building query seed array... [2.886s] Computing hash join... [5.798s] Masking low complexity seeds... [0.25s] Searching alignments... [47.225s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 1/2, index chunk 3/4. Building reference seed array... [14.148s] Building query seed array... [2.7s] Computing hash join... [6.002s] Masking low complexity seeds... [0.22s] Searching alignments... [42.015s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.543s] Building query seed array... [2.268s] Computing hash join... [5.445s] Masking low complexity seeds... [0.24s] Searching alignments... [38.799s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.66s] Building query seed array... [2.043s] Computing hash join... [5.594s] Masking low complexity seeds... [0.249s] Searching alignments... [38.821s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 2/2, index chunk 2/4. Building reference seed array... [13.052s] Building query seed array... [2.406s] Computing hash join... [5.544s] Masking low complexity seeds... [0.266s] Searching alignments... [30.793s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.991s] Building query seed array... [2.388s] Computing hash join... [5.727s] Masking low complexity seeds... [0.214s] Searching alignments... [32.845s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.672s] Building query seed array... [2.216s] Computing hash join... [5.709s] Masking low complexity seeds... [0.216s] Searching alignments... [28.83s] Deallocating memory... [0s] Deallocating buffers... [2.207s] Clearing query masking... [1.555s] Opening temporary output file... [0.034s] Computing alignments... Loading trace points... [6.159s] Sorting trace points... [1.22s] Computing alignments... [29.92s] Deallocating buffers... [0.013s] Loading trace points... [0.097s] Sorting trace points... [0.847s] Computing alignments... [30.322s] Deallocating buffers... [0.014s] Loading trace points... [0.072s] Sorting trace points... [0.927s] Computing alignments... [30s] Deallocating buffers... [0.015s] Loading trace points... [0.05s] Sorting trace points... [0.85s] Computing alignments... [29.818s] Deallocating buffers... [0.014s] Loading trace points... [0.532s] Sorting trace points... [1.206s] Computing alignments... [30.182s] Deallocating buffers... [0.016s] Loading trace points... [0.061s] Sorting trace points... [1.171s] Computing alignments... [30.374s] Deallocating buffers... [0.013s] Loading trace points... [0.066s] Sorting trace points... [1.128s] Computing alignments... [30.025s] Deallocating buffers... [0.013s] Loading trace points... [0.093s] Sorting trace points... [1.14s] Computing alignments... [29.842s] Deallocating buffers... [0.013s] Loading trace points... [0.05s] Sorting trace points... [1.132s] Computing alignments... [30.586s] Deallocating buffers... [0.013s] Loading trace points... [0.047s] Sorting trace points... [1.225s] Computing alignments... [31.239s] Deallocating buffers... [0.013s] Loading trace points... [0.071s] Sorting trace points... [1.125s] Computing alignments... [31.405s] Deallocating buffers... [0.014s] Loading trace points... [0.002s] Sorting trace points... [1.196s] Computing alignments... [31.28s] Deallocating buffers... [0.016s] Loading trace points... [0.074s] Sorting trace points... [1.219s] Computing alignments... [31.539s] Deallocating buffers... [0.014s] Loading trace points... [0.079s] Sorting trace points... [1.201s] Computing alignments... [31.338s] Deallocating buffers... [0.013s] Loading trace points... [0.06s] Sorting trace points... [0.862s] Computing alignments... [31.549s] Deallocating buffers... [0.015s] Loading trace points... [0s] Sorting trace points... [1.183s] Computing alignments... [31.098s] Deallocating buffers... [0.013s] Loading trace points... [0s] [516.027s] Deallocating reference... [0.06s] Loading reference sequences... [29.163s] Masking reference... [32.17s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.007s] Building reference histograms... [32.512s] Allocating buffers... [0.001s] Processing query block 1, reference block 6/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.238s] Building query seed array... [2.023s] Computing hash join... [7.164s] Masking low complexity seeds... [0.479s] Searching alignments... [72.465s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.917s] Building query seed array... [2.817s] Computing hash join... [6.759s] Masking low complexity seeds... [0.22s] Searching alignments... [47.773s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 1/2, index chunk 3/4. Building reference seed array... [14.158s] Building query seed array... [2.716s] Computing hash join... [6.499s] Masking low complexity seeds... [0.239s] Searching alignments... [41.828s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.124s] Building query seed array... [2.249s] Computing hash join... [6.365s] Masking low complexity seeds... [0.237s] Searching alignments... [36.552s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.083s] Building query seed array... [2.107s] Computing hash join... [6.419s] Masking low complexity seeds... [0.222s] Searching alignments... [37.125s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 2/2, index chunk 2/4. Building reference seed array... [13.339s] Building query seed array... [2.405s] Computing hash join... [6.245s] Masking low complexity seeds... [0.235s] Searching alignments... [29.493s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.613s] Building query seed array... [2.483s] Computing hash join... [6.293s] Masking low complexity seeds... [0.211s] Searching alignments... [31.974s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.008s] Building query seed array... [2.114s] Computing hash join... [6.516s] Masking low complexity seeds... [0.218s] Searching alignments... [28.118s] Deallocating memory... [0s] Deallocating buffers... [1.78s] Clearing query masking... [1.582s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [6.071s] Sorting trace points... [1.167s] Computing alignments... [29.776s] Deallocating buffers... [0.013s] Loading trace points... [0.077s] Sorting trace points... [1.001s] Computing alignments... [29.969s] Deallocating buffers... [0.015s] Loading trace points... [0.08s] Sorting trace points... [1.154s] Computing alignments... [29.767s] Deallocating buffers... [0.016s] Loading trace points... [0s] Sorting trace points... [1.124s] Computing alignments... [29.625s] Deallocating buffers... [0.015s] Loading trace points... [0.063s] Sorting trace points... [1.175s] Computing alignments... [29.92s] Deallocating buffers... [0.013s] Loading trace points... [0.076s] Sorting trace points... [1.128s] Computing alignments... [30.087s] Deallocating buffers... [0.015s] Loading trace points... [0.064s] Sorting trace points... [0.871s] Computing alignments... [29.689s] Deallocating buffers... [0.015s] Loading trace points... [0.064s] Sorting trace points... [1.111s] Computing alignments... [29.666s] Deallocating buffers... [0.012s] Loading trace points... [0.069s] Sorting trace points... [1.168s] Computing alignments... [30.368s] Deallocating buffers... [0.016s] Loading trace points... [0.38s] Sorting trace points... [1.187s] Computing alignments... [31.108s] Deallocating buffers... [0.013s] Loading trace points... [0.072s] Sorting trace points... [1.174s] Computing alignments... [31.112s] Deallocating buffers... [0.017s] Loading trace points... [0.077s] Sorting trace points... [1.118s] Computing alignments... [31.214s] Deallocating buffers... [0.016s] Loading trace points... [0.058s] Sorting trace points... [1.237s] Computing alignments... [31.449s] Deallocating buffers... [0.016s] Loading trace points... [0.107s] Sorting trace points... [1.204s] Computing alignments... [31.094s] Deallocating buffers... [0.016s] Loading trace points... [0.072s] Sorting trace points... [1.208s] Computing alignments... [31.383s] Deallocating buffers... [0.024s] Loading trace points... [0s] Sorting trace points... [0.947s] Computing alignments... [30.826s] Deallocating buffers... [0.014s] Loading trace points... [0s] [512.841s] Deallocating reference... [0.057s] Loading reference sequences... [29.358s] Masking reference... [30.893s] Initializing dictionary... [0.076s] Initializing temporary storage... [0.007s] Building reference histograms... [33.139s] Allocating buffers... [0.001s] Processing query block 1, reference block 7/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.267s] Building query seed array... [2.055s] Computing hash join... [6.71s] Masking low complexity seeds... [0.412s] Searching alignments... [76.125s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.683s] Building query seed array... [2.946s] Computing hash join... [6.786s] Masking low complexity seeds... [0.232s] Searching alignments... [49.03s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.839s] Building query seed array... [2.765s] Computing hash join... [6.33s] Masking low complexity seeds... [0.259s] Searching alignments... [43.306s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.664s] Building query seed array... [2.259s] Computing hash join... [6.836s] Masking low complexity seeds... [0.246s] Searching alignments... [38.897s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.357s] Building query seed array... [2.038s] Computing hash join... [6.575s] Masking low complexity seeds... [0.222s] Searching alignments... [37.543s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.818s] Building query seed array... [2.423s] Computing hash join... [6.639s] Masking low complexity seeds... [0.228s] Searching alignments... [31.033s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.503s] Building query seed array... [2.365s] Computing hash join... [6.197s] Masking low complexity seeds... [0.249s] Searching alignments... [33.522s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.629s] Building query seed array... [1.969s] Computing hash join... [6.24s] Masking low complexity seeds... [0.213s] Searching alignments... [29.519s] Deallocating memory... [0s] Deallocating buffers... [2.006s] Clearing query masking... [1.596s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [5.887s] Sorting trace points... [1.231s] Computing alignments... [29.937s] Deallocating buffers... [0.013s] Loading trace points... [0.104s] Sorting trace points... [1.176s] Computing alignments... [30.377s] Deallocating buffers... [0.133s] Loading trace points... [0.105s] Sorting trace points... [1.123s] Computing alignments... [30.058s] Deallocating buffers... [0.013s] Loading trace points... [0.045s] Sorting trace points... [1.163s] Computing alignments... [29.829s] Deallocating buffers... [0.012s] Loading trace points... [0.069s] Sorting trace points... [1.058s] Computing alignments... [30.118s] Deallocating buffers... [0.013s] Loading trace points... [0.08s] Sorting trace points... [0.902s] Computing alignments... [30.297s] Deallocating buffers... [0.014s] Loading trace points... [0.111s] Sorting trace points... [1.131s] Computing alignments... [29.908s] Deallocating buffers... [0.013s] Loading trace points... [0.08s] Sorting trace points... [1.155s] Computing alignments... [29.853s] Deallocating buffers... [0.013s] Loading trace points... [0.059s] Sorting trace points... [1.164s] Computing alignments... [30.666s] Deallocating buffers... [0.014s] Loading trace points... [0.057s] Sorting trace points... [1.202s] Computing alignments... [31.242s] Deallocating buffers... [0.013s] Loading trace points... [0.083s] Sorting trace points... [1.204s] Computing alignments... [31.272s] Deallocating buffers... [0.013s] Loading trace points... [0.064s] Sorting trace points... [0.87s] Computing alignments... [31.314s] Deallocating buffers... [0.015s] Loading trace points... [0.071s] Sorting trace points... [0.869s] Computing alignments... [31.534s] Deallocating buffers... [0.015s] Loading trace points... [0.001s] Sorting trace points... [1.176s] Computing alignments... [31.339s] Deallocating buffers... [0.016s] Loading trace points... [0.048s] Sorting trace points... [1.196s] Computing alignments... [31.416s] Deallocating buffers... [0.016s] Loading trace points... [0s] Sorting trace points... [1.168s] Computing alignments... [31.035s] Deallocating buffers... [0.013s] Loading trace points... [0s] [515.38s] Deallocating reference... [0.057s] Loading reference sequences... [29.095s] Masking reference... [32.093s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.007s] Building reference histograms... [32.526s] Allocating buffers... [0s] Processing query block 1, reference block 8/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.39s] Building query seed array... [2.065s] Computing hash join... [6.4s] Masking low complexity seeds... [0.444s] Searching alignments... [75.031s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 1/2, index chunk 2/4. Building reference seed array... [13.45s] Building query seed array... [2.925s] Computing hash join... [6.704s] Masking low complexity seeds... [0.248s] Searching alignments... [48.143s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.615s] Building query seed array... [2.625s] Computing hash join... [6.108s] Masking low complexity seeds... [0.247s] Searching alignments... [41.8s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.615s] Building query seed array... [2.295s] Computing hash join... [5.919s] Masking low complexity seeds... [0.25s] Searching alignments... [37.694s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.952s] Building query seed array... [2.026s] Computing hash join... [5.807s] Masking low complexity seeds... [0.236s] Searching alignments... [37.878s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.707s] Building query seed array... [2.297s] Computing hash join... [5.986s] Masking low complexity seeds... [0.268s] Searching alignments... [29.604s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 2/2, index chunk 3/4. Building reference seed array... [14.036s] Building query seed array... [2.412s] Computing hash join... [5.967s] Masking low complexity seeds... [0.208s] Searching alignments... [34.327s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.108s] Building query seed array... [2.042s] Computing hash join... [6.072s] Masking low complexity seeds... [0.221s] Searching alignments... [29.538s] Deallocating memory... [0s] Deallocating buffers... [2.077s] Clearing query masking... [1.59s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [6.043s] Sorting trace points... [1.223s] Computing alignments... [30.264s] Deallocating buffers... [0.013s] Loading trace points... [0.098s] Sorting trace points... [1.148s] Computing alignments... [30.42s] Deallocating buffers... [0.016s] Loading trace points... [0.078s] Sorting trace points... [1.175s] Computing alignments... [30.076s] Deallocating buffers... [0.016s] Loading trace points... [0.099s] Sorting trace points... [0.998s] Computing alignments... [30.039s] Deallocating buffers... [0.013s] Loading trace points... [0.051s] Sorting trace points... [1.076s] Computing alignments... [30.206s] Deallocating buffers... [0.016s] Loading trace points... [0.067s] Sorting trace points... [1.157s] Computing alignments... [30.477s] Deallocating buffers... [0.013s] Loading trace points... [0.095s] Sorting trace points... [1.138s] Computing alignments... [30.075s] Deallocating buffers... [0.016s] Loading trace points... [0.09s] Sorting trace points... [0.906s] Computing alignments... [29.924s] Deallocating buffers... [0.013s] Loading trace points... [0.1s] Sorting trace points... [1.141s] Computing alignments... [30.727s] Deallocating buffers... [0.014s] Loading trace points... [0.052s] Sorting trace points... [1.199s] Computing alignments... [31.317s] Deallocating buffers... [0.016s] Loading trace points... [0.077s] Sorting trace points... [1.23s] Computing alignments... [31.345s] Deallocating buffers... [0.056s] Loading trace points... [0.035s] Sorting trace points... [1.199s] Computing alignments... [31.317s] Deallocating buffers... [0.018s] Loading trace points... [0.08s] Sorting trace points... [1.204s] Computing alignments... [31.663s] Deallocating buffers... [0.013s] Loading trace points... [0.049s] Sorting trace points... [0.874s] Computing alignments... [31.4s] Deallocating buffers... [0.015s] Loading trace points... [0.062s] Sorting trace points... [0.901s] Computing alignments... [31.711s] Deallocating buffers... [0.015s] Loading trace points... [0s] Sorting trace points... [1.163s] Computing alignments... [31.177s] Deallocating buffers... [0.013s] Loading trace points... [0s] [517.381s] Deallocating reference... [0.061s] Loading reference sequences... [29.368s] Masking reference... [32.161s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.008s] Building reference histograms... [32.35s] Allocating buffers... [0s] Processing query block 1, reference block 9/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.574s] Building query seed array... [2.202s] Computing hash join... [6.754s] Masking low complexity seeds... [0.225s] Searching alignments... [75.559s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 1/2, index chunk 2/4. Building reference seed array... [13.639s] Building query seed array... [2.828s] Computing hash join... [6.649s] Masking low complexity seeds... [0.259s] Searching alignments... [47.864s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 1/2, index chunk 3/4. Building reference seed array... [14.04s] Building query seed array... [2.747s] Computing hash join... [6.489s] Masking low complexity seeds... [0.246s] Searching alignments... [43.179s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 1/2, index chunk 4/4. Building reference seed array... [11.097s] Building query seed array... [2.194s] Computing hash join... [6.899s] Masking low complexity seeds... [0.243s] Searching alignments... [37.72s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.501s] Building query seed array... [2.09s] Computing hash join... [6.631s] Masking low complexity seeds... [0.248s] Searching alignments... [37.603s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.814s] Building query seed array... [2.375s] Computing hash join... [6.837s] Masking low complexity seeds... [0.225s] Searching alignments... [30.52s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.729s] Building query seed array... [2.501s] Computing hash join... [6.329s] Masking low complexity seeds... [0.244s] Searching alignments... [33.367s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.565s] Building query seed array... [2.107s] Computing hash join... [6.334s] Masking low complexity seeds... [0.21s] Searching alignments... [29.012s] Deallocating memory... [0s] Deallocating buffers... [2.14s] Clearing query masking... [1.565s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [6.282s] Sorting trace points... [1.232s] Computing alignments... [30.111s] Deallocating buffers... [0.015s] Loading trace points... [0.078s] Sorting trace points... [1.156s] Computing alignments... [30.368s] Deallocating buffers... [0.016s] Loading trace points... [0.073s] Sorting trace points... [1.192s] Computing alignments... [29.988s] Deallocating buffers... [0.016s] Loading trace points... [0.049s] Sorting trace points... [1.106s] Computing alignments... [29.803s] Deallocating buffers... [0.015s] Loading trace points... [0.064s] Sorting trace points... [1.148s] Computing alignments... [30.099s] Deallocating buffers... [0.013s] Loading trace points... [0.054s] Sorting trace points... [1.075s] Computing alignments... [30.322s] Deallocating buffers... [0.015s] Loading trace points... [0.057s] Sorting trace points... [1.159s] Computing alignments... [29.882s] Deallocating buffers... [0.016s] Loading trace points... [0.075s] Sorting trace points... [1.117s] Computing alignments... [29.815s] Deallocating buffers... [0.015s] Loading trace points... [0.055s] Sorting trace points... [1.19s] Computing alignments... [30.527s] Deallocating buffers... [0.092s] Loading trace points... [0.058s] Sorting trace points... [0.877s] Computing alignments... [31.225s] Deallocating buffers... [0.014s] Loading trace points... [0.084s] Sorting trace points... [0.928s] Computing alignments... [31.264s] Deallocating buffers... [0.015s] Loading trace points... [0.003s] Sorting trace points... [1.173s] Computing alignments... [31.237s] Deallocating buffers... [0.013s] Loading trace points... [0.072s] Sorting trace points... [1.198s] Computing alignments... [31.563s] Deallocating buffers... [0.013s] Loading trace points... [0.06s] Sorting trace points... [1.264s] Computing alignments... [31.41s] Deallocating buffers... [0.118s] Loading trace points... [0.066s] Sorting trace points... [1.221s] Computing alignments... [31.583s] Deallocating buffers... [0.013s] Loading trace points... [0s] Sorting trace points... [1.186s] Computing alignments... [30.958s] Deallocating buffers... [0.013s] Loading trace points... [0s] [516.074s] Deallocating reference... [0.059s] Loading reference sequences... [29.148s] Masking reference... [30.89s] Initializing dictionary... [0.077s] Initializing temporary storage... [0.007s] Building reference histograms... [32.962s] Allocating buffers... [0s] Processing query block 1, reference block 10/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.094s] Building query seed array... [2.06s] Computing hash join... [6.972s] Masking low complexity seeds... [0.232s] Searching alignments... [75.102s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 1/2, index chunk 2/4. Building reference seed array... [13.011s] Building query seed array... [3.13s] Computing hash join... [6.976s] Masking low complexity seeds... [0.242s] Searching alignments... [47.096s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 1/2, index chunk 3/4. Building reference seed array... [14.231s] Building query seed array... [2.696s] Computing hash join... [6.457s] Masking low complexity seeds... [0.248s] Searching alignments... [41.877s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.524s] Building query seed array... [2.275s] Computing hash join... [6.673s] Masking low complexity seeds... [0.28s] Searching alignments... [38.118s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.88s] Building query seed array... [2.026s] Computing hash join... [6.48s] Masking low complexity seeds... [0.255s] Searching alignments... [38.039s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.542s] Building query seed array... [2.406s] Computing hash join... [6.54s] Masking low complexity seeds... [0.234s] Searching alignments... [30.204s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.813s] Building query seed array... [2.463s] Computing hash join... [6.482s] Masking low complexity seeds... [0.24s] Searching alignments... [33.486s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.403s] Building query seed array... [2.082s] Computing hash join... [6.527s] Masking low complexity seeds... [0.221s] Searching alignments... [29.503s] Deallocating memory... [0s] Deallocating buffers... [2.25s] Clearing query masking... [1.626s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [6.103s] Sorting trace points... [1.24s] Computing alignments... [29.928s] Deallocating buffers... [0.014s] Loading trace points... [0.077s] Sorting trace points... [1.196s] Computing alignments... [30.505s] Deallocating buffers... [0.173s] Loading trace points... [0.092s] Sorting trace points... [1.138s] Computing alignments... [29.94s] Deallocating buffers... [0.012s] Loading trace points... [0.036s] Sorting trace points... [1.119s] Computing alignments... [29.761s] Deallocating buffers... [0.023s] Loading trace points... [0.061s] Sorting trace points... [1.148s] Computing alignments... [30.088s] Deallocating buffers... [0.015s] Loading trace points... [0.089s] Sorting trace points... [1.158s] Computing alignments... [30.357s] Deallocating buffers... [0.016s] Loading trace points... [0.065s] Sorting trace points... [1.022s] Computing alignments... [29.915s] Deallocating buffers... [0.013s] Loading trace points... [0.06s] Sorting trace points... [0.937s] Computing alignments... [29.785s] Deallocating buffers... [0.013s] Loading trace points... [0.075s] Sorting trace points... [1.139s] Computing alignments... [30.512s] Deallocating buffers... [0.013s] Loading trace points... [0.078s] Sorting trace points... [1.197s] Computing alignments... [31.164s] Deallocating buffers... [0.017s] Loading trace points... [0.092s] Sorting trace points... [0.843s] Computing alignments... [31.298s] Deallocating buffers... [0.015s] Loading trace points... [0.045s] Sorting trace points... [1.094s] Computing alignments... [31.392s] Deallocating buffers... [0.014s] Loading trace points... [0.088s] Sorting trace points... [1.205s] Computing alignments... [31.663s] Deallocating buffers... [0.014s] Loading trace points... [0.087s] Sorting trace points... [1.187s] Computing alignments... [31.441s] Deallocating buffers... [0.013s] Loading trace points... [0.083s] Sorting trace points... [1.201s] Computing alignments... [31.641s] Deallocating buffers... [0.013s] Loading trace points... [0s] Sorting trace points... [1.187s] Computing alignments... [31.138s] Deallocating buffers... [0.016s] Loading trace points... [0s] [516.295s] Deallocating reference... [0.067s] Loading reference sequences... [29.809s] Masking reference... [30.948s] Initializing dictionary... [0.077s] Initializing temporary storage... [0.009s] Building reference histograms... [32.716s] Allocating buffers... [0s] Processing query block 1, reference block 11/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.542s] Building query seed array... [2.043s] Computing hash join... [6.69s] Masking low complexity seeds... [0.413s] Searching alignments... [73.732s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.889s] Building query seed array... [2.846s] Computing hash join... [5.995s] Masking low complexity seeds... [0.229s] Searching alignments... [47.656s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 1/2, index chunk 3/4. Building reference seed array... [14.38s] Building query seed array... [2.599s] Computing hash join... [6.773s] Masking low complexity seeds... [0.341s] Searching alignments... [42.174s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 1/2, index chunk 4/4. Building reference seed array... [11.022s] Building query seed array... [2.277s] Computing hash join... [6.345s] Masking low complexity seeds... [0.228s] Searching alignments... [37.015s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 2/2, index chunk 1/4. Building reference seed array... [11.114s] Building query seed array... [2.06s] Computing hash join... [6.003s] Masking low complexity seeds... [0.216s] Searching alignments... [38.738s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 2/2, index chunk 2/4. Building reference seed array... [13.054s] Building query seed array... [2.308s] Computing hash join... [6.063s] Masking low complexity seeds... [0.221s] Searching alignments... [30.493s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.882s] Building query seed array... [2.492s] Computing hash join... [6.211s] Masking low complexity seeds... [0.227s] Searching alignments... [32.794s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.65s] Building query seed array... [2.158s] Computing hash join... [6.347s] Masking low complexity seeds... [0.22s] Searching alignments... [29.586s] Deallocating memory... [0s] Deallocating buffers... [2.488s] Clearing query masking... [1.498s] Opening temporary output file... [0.002s] Computing alignments... Loading trace points... [6.065s] Sorting trace points... [1.155s] Computing alignments... [30.019s] Deallocating buffers... [0.015s] Loading trace points... [0.065s] Sorting trace points... [1.151s] Computing alignments... [30.384s] Deallocating buffers... [0.015s] Loading trace points... [0.049s] Sorting trace points... [1.143s] Computing alignments... [30.012s] Deallocating buffers... [0.012s] Loading trace points... [0.051s] Sorting trace points... [1.115s] Computing alignments... [29.913s] Deallocating buffers... [0.012s] Loading trace points... [0.06s] Sorting trace points... [1.151s] Computing alignments... [30.142s] Deallocating buffers... [0.016s] Loading trace points... [0.062s] Sorting trace points... [1.305s] Computing alignments... [30.377s] Deallocating buffers... [0.224s] Loading trace points... [0.065s] Sorting trace points... [1.064s] Computing alignments... [29.848s] Deallocating buffers... [0.013s] Loading trace points... [0.06s] Sorting trace points... [1.134s] Computing alignments... [29.88s] Deallocating buffers... [0.013s] Loading trace points... [0.054s] Sorting trace points... [1.355s] Computing alignments... [30.615s] Deallocating buffers... [0.144s] Loading trace points... [0.053s] Sorting trace points... [1.078s] Computing alignments... [31.274s] Deallocating buffers... [0.016s] Loading trace points... [0.058s] Sorting trace points... [0.944s] Computing alignments... [31.443s] Deallocating buffers... [0.014s] Loading trace points... [0.074s] Sorting trace points... [1.252s] Computing alignments... [31.346s] Deallocating buffers... [0.047s] Loading trace points... [0.046s] Sorting trace points... [1.252s] Computing alignments... [31.593s] Deallocating buffers... [0.159s] Loading trace points... [0.105s] Sorting trace points... [1.201s] Computing alignments... [31.355s] Deallocating buffers... [0.013s] Loading trace points... [0.073s] Sorting trace points... [1.334s] Computing alignments... [31.543s] Deallocating buffers... [0.16s] Loading trace points... [0s] Sorting trace points... [1.194s] Computing alignments... [31.157s] Deallocating buffers... [0.013s] Loading trace points... [0s] [517.712s] Deallocating reference... [0.061s] Loading reference sequences... [29.277s] Masking reference... [30.887s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.007s] Building reference histograms... [33.308s] Allocating buffers... [0s] Processing query block 1, reference block 12/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.486s] Building query seed array... [2.044s] Computing hash join... [7.165s] Masking low complexity seeds... [0.577s] Searching alignments... [73.979s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.934s] Building query seed array... [2.87s] Computing hash join... [6.678s] Masking low complexity seeds... [0.242s] Searching alignments... [49.315s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 1/2, index chunk 3/4. Building reference seed array... [14.11s] Building query seed array... [2.683s] Computing hash join... [6.445s] Masking low complexity seeds... [0.282s] Searching alignments... [44.282s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.351s] Building query seed array... [2.39s] Computing hash join... [6.795s] Masking low complexity seeds... [0.241s] Searching alignments... [38.726s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.34s] Building query seed array... [1.982s] Computing hash join... [6.783s] Masking low complexity seeds... [0.231s] Searching alignments... [38.65s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 2/2, index chunk 2/4. Building reference seed array... [13.072s] Building query seed array... [2.324s] Computing hash join... [6.913s] Masking low complexity seeds... [0.226s] Searching alignments... [30.188s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.61s] Building query seed array... [2.569s] Computing hash join... [6.421s] Masking low complexity seeds... [0.261s] Searching alignments... [33.852s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.289s] Building query seed array... [2.04s] Computing hash join... [6.235s] Masking low complexity seeds... [0.207s] Searching alignments... [29.367s] Deallocating memory... [0s] Deallocating buffers... [2.276s] Clearing query masking... [1.554s] Opening temporary output file... [0.002s] Computing alignments... Loading trace points... [6.043s] Sorting trace points... [1.223s] Computing alignments... [30.175s] Deallocating buffers... [0.014s] Loading trace points... [0.083s] Sorting trace points... [1.123s] Computing alignments... [30.41s] Deallocating buffers... [0.016s] Loading trace points... [0.08s] Sorting trace points... [1.2s] Computing alignments... [30.172s] Deallocating buffers... [0.016s] Loading trace points... [0.062s] Sorting trace points... [0.932s] Computing alignments... [29.917s] Deallocating buffers... [0.015s] Loading trace points... [0.06s] Sorting trace points... [1.163s] Computing alignments... [30.227s] Deallocating buffers... [0.013s] Loading trace points... [0.061s] Sorting trace points... [0.869s] Computing alignments... [30.438s] Deallocating buffers... [0.014s] Loading trace points... [0.084s] Sorting trace points... [1.089s] Computing alignments... [30.121s] Deallocating buffers... [0.015s] Loading trace points... [0.089s] Sorting trace points... [1.125s] Computing alignments... [29.926s] Deallocating buffers... [0.016s] Loading trace points... [0.075s] Sorting trace points... [1.144s] Computing alignments... [30.673s] Deallocating buffers... [0.016s] Loading trace points... [0.066s] Sorting trace points... [0.99s] Computing alignments... [31.383s] Deallocating buffers... [0.014s] Loading trace points... [0.082s] Sorting trace points... [1.18s] Computing alignments... [31.319s] Deallocating buffers... [0.013s] Loading trace points... [0.042s] Sorting trace points... [1.018s] Computing alignments... [31.379s] Deallocating buffers... [0.013s] Loading trace points... [0.094s] Sorting trace points... [1.209s] Computing alignments... [31.511s] Deallocating buffers... [0.013s] Loading trace points... [0s] Sorting trace points... [0.941s] Computing alignments... [31.329s] Deallocating buffers... [0.015s] Loading trace points... [0.067s] Sorting trace points... [1.176s] Computing alignments... [31.433s] Deallocating buffers... [0.017s] Loading trace points... [0s] Sorting trace points... [1.163s] Computing alignments... [31.073s] Deallocating buffers... [0.016s] Loading trace points... [0s] [517.306s] Deallocating reference... [0.062s] Loading reference sequences... [29.211s] Masking reference... [32.192s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.009s] Building reference histograms... [32.364s] Allocating buffers... [0s] Processing query block 1, reference block 13/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.201s] Building query seed array... [2.061s] Computing hash join... [7.176s] Masking low complexity seeds... [0.231s] Searching alignments... [76.318s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 1/2, index chunk 2/4. Building reference seed array... [13.793s] Building query seed array... [3.017s] Computing hash join... [7.19s] Masking low complexity seeds... [0.245s] Searching alignments... [47.678s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 1/2, index chunk 3/4. Building reference seed array... [14.214s] Building query seed array... [2.658s] Computing hash join... [6.459s] Masking low complexity seeds... [0.25s] Searching alignments... [42.239s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 1/2, index chunk 4/4. Building reference seed array... [11.132s] Building query seed array... [2.369s] Computing hash join... [6.476s] Masking low complexity seeds... [0.252s] Searching alignments... [36.949s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.76s] Building query seed array... [2.042s] Computing hash join... [6.098s] Masking low complexity seeds... [0.236s] Searching alignments... [38.248s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 2/2, index chunk 2/4. Building reference seed array... [13.115s] Building query seed array... [2.441s] Computing hash join... [6.278s] Masking low complexity seeds... [0.234s] Searching alignments... [30.455s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 2/2, index chunk 3/4. Building reference seed array... [14.001s] Building query seed array... [2.545s] Computing hash join... [6.497s] Masking low complexity seeds... [0.215s] Searching alignments... [33.852s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 2/2, index chunk 4/4. Building reference seed array... [11.193s] Building query seed array... [2.122s] Computing hash join... [6.31s] Masking low complexity seeds... [0.215s] Searching alignments... [28.974s] Deallocating memory... [0s] Deallocating buffers... [2.366s] Clearing query masking... [1.734s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [6.523s] Sorting trace points... [1.13s] Computing alignments... [29.93s] Deallocating buffers... [0.014s] Loading trace points... [0.084s] Sorting trace points... [1.007s] Computing alignments... [30.194s] Deallocating buffers... [0.013s] Loading trace points... [0.093s] Sorting trace points... [1.136s] Computing alignments... [30.021s] Deallocating buffers... [0.013s] Loading trace points... [0.068s] Sorting trace points... [1.143s] Computing alignments... [29.761s] Deallocating buffers... [0.012s] Loading trace points... [0.055s] Sorting trace points... [1.033s] Computing alignments... [30.228s] Deallocating buffers... [0.013s] Loading trace points... [0.082s] Sorting trace points... [1.113s] Computing alignments... [30.417s] Deallocating buffers... [0.013s] Loading trace points... [0.079s] Sorting trace points... [1.165s] Computing alignments... [30.034s] Deallocating buffers... [0.193s] Loading trace points... [0.079s] Sorting trace points... [1.138s] Computing alignments... [29.904s] Deallocating buffers... [0.013s] Loading trace points... [1.693s] Sorting trace points... [0.979s] Computing alignments... [30.698s] Deallocating buffers... [0.015s] Loading trace points... [0.083s] Sorting trace points... [1.205s] Computing alignments... [31.303s] Deallocating buffers... [0.017s] Loading trace points... [0.121s] Sorting trace points... [1.363s] Computing alignments... [31.408s] Deallocating buffers... [0.141s] Loading trace points... [0s] Sorting trace points... [1.161s] Computing alignments... [31.368s] Deallocating buffers... [0.022s] Loading trace points... [0.07s] Sorting trace points... [1.207s] Computing alignments... [31.573s] Deallocating buffers... [0.026s] Loading trace points... [0.078s] Sorting trace points... [1.19s] Computing alignments... [31.506s] Deallocating buffers... [0.021s] Loading trace points... [0.133s] Sorting trace points... [1.201s] Computing alignments... [31.518s] Deallocating buffers... [0.013s] Loading trace points... [0s] Sorting trace points... [1.182s] Computing alignments... [31.114s] Deallocating buffers... [0.013s] Loading trace points... [0s] [519.381s] Deallocating reference... [0.057s] Loading reference sequences... [24.454s] Masking reference... [25.759s] Initializing dictionary... [0.064s] Initializing temporary storage... [0.008s] Building reference histograms... [26.2s] Allocating buffers... [0s] Processing query block 1, reference block 14/14, shape 1/2, index chunk 1/4. Building reference seed array... [8.32s] Building query seed array... [2.048s] Computing hash join... [4.68s] Masking low complexity seeds... [0.222s] Searching alignments... [60.173s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 1/2, index chunk 2/4. Building reference seed array... [10.484s] Building query seed array... [3.087s] Computing hash join... [5.037s] Masking low complexity seeds... [0.217s] Searching alignments... [37.874s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 1/2, index chunk 3/4. Building reference seed array... [10.957s] Building query seed array... [2.821s] Computing hash join... [4.813s] Masking low complexity seeds... [0.212s] Searching alignments... [34.126s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 1/2, index chunk 4/4. Building reference seed array... [8.859s] Building query seed array... [2.338s] Computing hash join... [4.855s] Masking low complexity seeds... [0.219s] Searching alignments... [30.738s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 2/2, index chunk 1/4. Building reference seed array... [8.222s] Building query seed array... [2.126s] Computing hash join... [4.612s] Masking low complexity seeds... [0.216s] Searching alignments... [30.999s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 2/2, index chunk 2/4. Building reference seed array... [10.228s] Building query seed array... [2.381s] Computing hash join... [4.525s] Masking low complexity seeds... [0.203s] Searching alignments... [24.369s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 2/2, index chunk 3/4. Building reference seed array... [10.941s] Building query seed array... [2.333s] Computing hash join... [5.027s] Masking low complexity seeds... [0.296s] Searching alignments... [26.882s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 2/2, index chunk 4/4. Building reference seed array... [8.377s] Building query seed array... [1.931s] Computing hash join... [4.949s] Masking low complexity seeds... [0.214s] Searching alignments... [24.158s] Deallocating memory... [0s] Deallocating buffers... [1.199s] Clearing query masking... [1.502s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [10.931s] Sorting trace points... [1.983s] Computing alignments... [48.06s] Deallocating buffers... [0.024s] Loading trace points... [0.15s] Sorting trace points... [1.977s] Computing alignments... [47.855s] Deallocating buffers... [0.201s] Loading trace points... [0.169s] Sorting trace points... [1.845s] Computing alignments... [48.349s] Deallocating buffers... [0.025s] Loading trace points... [0.089s] Sorting trace points... [1.897s] Computing alignments... [47.787s] Deallocating buffers... [0.068s] Loading trace points... [0.066s] Sorting trace points... [1.506s] Computing alignments... [49.338s] Deallocating buffers... [0.023s] Loading trace points... [0.116s] Sorting trace points... [1.665s] Computing alignments... [49.99s] Deallocating buffers... [0.022s] Loading trace points... [0.119s] Sorting trace points... [2.027s] Computing alignments... [50.111s] Deallocating buffers... [0.125s] Loading trace points... [0s] Sorting trace points... [2.197s] Computing alignments... [49.754s] Deallocating buffers... [0.353s] Loading trace points... [0s] [419.016s] Deallocating reference... [0.049s] Loading reference sequences... [0.067s] Deallocating buffers... [0s] Joining output blocks... Joining output blocks... [2115.9s] [2115.9s] Deallocating queries... [0.074s] Loading query sequences... [0s] Closing the input file... [0s] Closing the output file... Loading dictionary... [3.533s] [4.51s] Closing the database... [0s] Cleaning up... [0s] Total time = 17882.6s Reported 2382064778 pairwise alignments, 2382064778 HSPs. 13118448 queries aligned. DIAMOND BLASTx on /gscratch/srlab/sam/data/P_verrucosa/RNAseq/E2_R1.fastp-trim.20230215.fq.gz complete: E2_R1.blastx.meganized.daa Now MEGANizing E2_R1.blastx.meganized.daa Version MEGAN Community Edition (version 6.22.0, built 19 Feb 2022) Author(s) Daniel H. Huson Copyright (C) 2022 Daniel H. Huson. This program comes with ABSOLUTELY NO WARRANTY. Java version: 17.0.2 Functional classifications to use: EC, EGGNOG, GTDB, INTERPRO2GO, SEED Loading ncbi.map: 2,396,736 Loading ncbi.tre: 2,396,740 Loading ec.map: 8,200 Loading ec.tre: 8,204 Loading eggnog.map: 30,875 Loading eggnog.tre: 30,986 Loading gtdb.map: 240,103 Loading gtdb.tre: 240,107 Loading interpro2go.map: 14,242 Loading interpro2go.tre: 28,907 Loading seed.map: 961 Loading seed.tre: 962 Meganizing: E2_R1.blastx.meganized.daa Meganizing init Annotating DAA file using FAST mode (accession database and first accession per line) Annotating references 10% 20% 30% 40% 50% 60% 100% (500.0s) Writing 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (1.2s) Binning reads Initializing... Initializing binning... Using 'Naive LCA' algorithm for binning: Taxonomy Using Best-Hit algorithm for binning: SEED Using Best-Hit algorithm for binning: EGGNOG Using 'Naive LCA' algorithm for binning: GTDB Using Best-Hit algorithm for binning: EC Using Best-Hit algorithm for binning: INTERPRO2GO Binning reads... Binning reads Analyzing alignments 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (4,461.3s) Total reads: 13,118,448 With hits: 13,118,448 Alignments: 2,377,099,400 Assig. Taxonomy: 12,124,599 Assig. SEED: 100,116 Assig. EGGNOG: 42,240 Assig. GTDB: 352,120 Assig. EC: 2,076,350 Assig. INTERPRO2GO: 1,136,012 MinSupport set to: 6559 Binning reads Applying min-support & disabled filter to Taxonomy... 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (0.3s) Min-supp. changes: 3,413 Binning reads Applying min-support & disabled filter to GTDB... 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (8.8s) Min-supp. changes: 2,602 Binning reads Writing classification tables 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (31.8s) Binning reads Syncing 100% (0.3s) Class. Taxonomy: 63 Class. SEED: 461 Class. EGGNOG: 1,628 Class. GTDB: 17 Class. EC: 2,215 Class. INTERPRO2GO: 7,452 Total time: 5,012s Peak memory: 37.8 of 195.3G MEGANization of E2_R1.blastx.meganized.daa completed. Generating MD5 checksum for /gscratch/srlab/sam/data/P_verrucosa/RNAseq/E2_R2.fastp-trim.20230215.fq.gz... edc3c98372f872c20b4669fa9e168914 /gscratch/srlab/sam/data/P_verrucosa/RNAseq/E2_R2.fastp-trim.20230215.fq.gz Running DIAMOND BLASTx on /gscratch/srlab/sam/data/P_verrucosa/RNAseq/E2_R2.fastp-trim.20230215.fq.gz. diamond v2.1.1.155 (C) Max Planck Society for the Advancement of Science Documentation, support and updates available at http://www.diamondsearch.org Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021) #CPU threads: 40 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: Percentage range of top alignment score to report hits: 5 Opening the database... [0.31s] Database: /gscratch/srlab/blastdbs/20230215-ncbi-nr/20230215-ncbi-nr.dmnd (type: Diamond database, sequences: 526308523, letters: 207134680681) Block size = 15000000000 Opening the input file... [0.728s] Opening the output file... [0s] Loading query sequences... [74.273s] Masking queries... [18.641s] Algorithm: Double-indexed Building query histograms... [19.947s] Loading reference sequences... [31.501s] Masking reference... [32.002s] Initializing dictionary... [0.077s] Initializing temporary storage... [0.008s] Building reference histograms... [32.493s] Allocating buffers... [0s] Processing query block 1, reference block 1/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.06s] Building query seed array... [2.033s] Computing hash join... [6.234s] Masking low complexity seeds... [0.253s] Searching alignments... [75.179s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.756s] Building query seed array... [2.929s] Computing hash join... [6.623s] Masking low complexity seeds... [0.254s] Searching alignments... [48.595s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.841s] Building query seed array... [2.743s] Computing hash join... [6.474s] Masking low complexity seeds... [0.28s] Searching alignments... [42.563s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.996s] Building query seed array... [2.282s] Computing hash join... [6.611s] Masking low complexity seeds... [0.262s] Searching alignments... [37.283s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.065s] Building query seed array... [2.054s] Computing hash join... [6.732s] Masking low complexity seeds... [0.307s] Searching alignments... [42.73s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.567s] Building query seed array... [2.293s] Computing hash join... [6.523s] Masking low complexity seeds... [0.235s] Searching alignments... [30.777s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.334s] Building query seed array... [2.458s] Computing hash join... [6.377s] Masking low complexity seeds... [0.262s] Searching alignments... [36.037s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.18s] Building query seed array... [2.028s] Computing hash join... [6.222s] Masking low complexity seeds... [0.237s] Searching alignments... [30.26s] Deallocating memory... [0s] Deallocating buffers... [1.496s] Clearing query masking... [1.648s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [6.174s] Sorting trace points... [1.233s] Computing alignments... [30.02s] Deallocating buffers... [0.015s] Loading trace points... [0.066s] Sorting trace points... [0.994s] Computing alignments... [30.343s] Deallocating buffers... [0.014s] Loading trace points... [0.054s] Sorting trace points... [0.816s] Computing alignments... [30.57s] Deallocating buffers... [0.014s] Loading trace points... [0.049s] Sorting trace points... [0.862s] Computing alignments... [29.736s] Deallocating buffers... [0.014s] Loading trace points... [0.084s] Sorting trace points... [1.126s] Computing alignments... [29.767s] Deallocating buffers... [0.012s] Loading trace points... [0.001s] Sorting trace points... [1.111s] Computing alignments... [30.036s] Deallocating buffers... [0.016s] Loading trace points... [0.04s] Sorting trace points... [1.128s] Computing alignments... [30.336s] Deallocating buffers... [0.016s] Loading trace points... [0.001s] Sorting trace points... [1.174s] Computing alignments... [29.793s] Deallocating buffers... [0.012s] Loading trace points... [0.073s] Sorting trace points... [1.151s] Computing alignments... [30.944s] Deallocating buffers... [0.013s] Loading trace points... [0.103s] Sorting trace points... [1.174s] Computing alignments... [32.194s] Deallocating buffers... [0.013s] Loading trace points... [0.001s] Sorting trace points... [1.222s] Computing alignments... [32.366s] Deallocating buffers... [0.017s] Loading trace points... [0.081s] Sorting trace points... [1.263s] Computing alignments... [32.374s] Deallocating buffers... [0.017s] Loading trace points... [0.057s] Sorting trace points... [1.242s] Computing alignments... [32.448s] Deallocating buffers... [0.014s] Loading trace points... [0.048s] Sorting trace points... [1.191s] Computing alignments... [32.332s] Deallocating buffers... [0.013s] Loading trace points... [0.08s] Sorting trace points... [1.205s] Computing alignments... [32.464s] Deallocating buffers... [0.013s] Loading trace points... [0s] Sorting trace points... [1.198s] Computing alignments... [32.134s] Deallocating buffers... [0.014s] Loading trace points... [0s] [523.199s] Deallocating reference... [0.064s] Loading reference sequences... [29.389s] Masking reference... [31.006s] Initializing dictionary... [0.077s] Initializing temporary storage... [0.008s] Building reference histograms... [32.936s] Allocating buffers... [0s] Processing query block 1, reference block 2/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.356s] Building query seed array... [2.039s] Computing hash join... [6.839s] Masking low complexity seeds... [0.536s] Searching alignments... [71.721s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.726s] Building query seed array... [2.705s] Computing hash join... [6.678s] Masking low complexity seeds... [0.259s] Searching alignments... [48.618s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 1/2, index chunk 3/4. Building reference seed array... [14.261s] Building query seed array... [2.766s] Computing hash join... [6.388s] Masking low complexity seeds... [0.268s] Searching alignments... [42.624s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.764s] Building query seed array... [2.145s] Computing hash join... [6.769s] Masking low complexity seeds... [0.256s] Searching alignments... [38.679s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.363s] Building query seed array... [1.956s] Computing hash join... [6.636s] Masking low complexity seeds... [0.251s] Searching alignments... [42.834s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.612s] Building query seed array... [2.329s] Computing hash join... [6.923s] Masking low complexity seeds... [0.302s] Searching alignments... [31.793s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.44s] Building query seed array... [2.307s] Computing hash join... [6.944s] Masking low complexity seeds... [0.315s] Searching alignments... [35.009s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.724s] Building query seed array... [1.974s] Computing hash join... [6.779s] Masking low complexity seeds... [0.334s] Searching alignments... [30.909s] Deallocating memory... [0s] Deallocating buffers... [1.355s] Clearing query masking... [1.595s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [6.158s] Sorting trace points... [1.196s] Computing alignments... [29.88s] Deallocating buffers... [0.015s] Loading trace points... [0.053s] Sorting trace points... [0.858s] Computing alignments... [30.208s] Deallocating buffers... [0.014s] Loading trace points... [0.038s] Sorting trace points... [0.834s] Computing alignments... [30.495s] Deallocating buffers... [0.014s] Loading trace points... [0.002s] Sorting trace points... [1.121s] Computing alignments... [29.681s] Deallocating buffers... [0.015s] Loading trace points... [0.06s] Sorting trace points... [0.787s] Computing alignments... [29.533s] Deallocating buffers... [0.014s] Loading trace points... [0.745s] Sorting trace points... [1.115s] Computing alignments... [29.892s] Deallocating buffers... [0.015s] Loading trace points... [0.059s] Sorting trace points... [0.869s] Computing alignments... [30.158s] Deallocating buffers... [0.014s] Loading trace points... [0.068s] Sorting trace points... [1.092s] Computing alignments... [29.678s] Deallocating buffers... [0.012s] Loading trace points... [0.077s] Sorting trace points... [1.141s] Computing alignments... [30.758s] Deallocating buffers... [0.016s] Loading trace points... [0.102s] Sorting trace points... [1.208s] Computing alignments... [32.078s] Deallocating buffers... [0.014s] Loading trace points... [0.109s] Sorting trace points... [1.135s] Computing alignments... [32.193s] Deallocating buffers... [0.014s] Loading trace points... [0.083s] Sorting trace points... [1.176s] Computing alignments... [32.368s] Deallocating buffers... [0.017s] Loading trace points... [0.075s] Sorting trace points... [1.077s] Computing alignments... [32.436s] Deallocating buffers... [0.016s] Loading trace points... [0.109s] Sorting trace points... [1.211s] Computing alignments... [32.18s] Deallocating buffers... [0.017s] Loading trace points... [0.094s] Sorting trace points... [1.233s] Computing alignments... [32.222s] Deallocating buffers... [0.017s] Loading trace points... [0s] Sorting trace points... [1.223s] Computing alignments... [31.787s] Deallocating buffers... [0.014s] Loading trace points... [0s] [521.07s] Deallocating reference... [0.063s] Loading reference sequences... [29.283s] Masking reference... [31.671s] Initializing dictionary... [0.077s] Initializing temporary storage... [0.008s] Building reference histograms... [32.067s] Allocating buffers... [0.001s] Processing query block 1, reference block 3/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.272s] Building query seed array... [2.155s] Computing hash join... [6.451s] Masking low complexity seeds... [0.445s] Searching alignments... [75.36s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.83s] Building query seed array... [2.912s] Computing hash join... [6.206s] Masking low complexity seeds... [0.3s] Searching alignments... [48.348s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.704s] Building query seed array... [2.789s] Computing hash join... [6.415s] Masking low complexity seeds... [0.262s] Searching alignments... [44.112s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 1/2, index chunk 4/4. Building reference seed array... [11.15s] Building query seed array... [2.341s] Computing hash join... [6.335s] Masking low complexity seeds... [0.286s] Searching alignments... [39.632s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.439s] Building query seed array... [2.084s] Computing hash join... [6.32s] Masking low complexity seeds... [0.277s] Searching alignments... [41.492s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 2/2, index chunk 2/4. Building reference seed array... [13.078s] Building query seed array... [2.321s] Computing hash join... [6.58s] Masking low complexity seeds... [0.247s] Searching alignments... [30.857s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.055s] Building query seed array... [2.476s] Computing hash join... [6.389s] Masking low complexity seeds... [0.284s] Searching alignments... [36.496s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.788s] Building query seed array... [2.106s] Computing hash join... [6.28s] Masking low complexity seeds... [0.255s] Searching alignments... [30.797s] Deallocating memory... [0s] Deallocating buffers... [1.745s] Clearing query masking... [1.601s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [6.13s] Sorting trace points... [1.21s] Computing alignments... [29.863s] Deallocating buffers... [0.013s] Loading trace points... [0.063s] Sorting trace points... [1.116s] Computing alignments... [30.209s] Deallocating buffers... [0.016s] Loading trace points... [0.064s] Sorting trace points... [1.132s] Computing alignments... [30.392s] Deallocating buffers... [0.016s] Loading trace points... [0.038s] Sorting trace points... [1.122s] Computing alignments... [29.625s] Deallocating buffers... [0.015s] Loading trace points... [0.063s] Sorting trace points... [1.032s] Computing alignments... [29.567s] Deallocating buffers... [0.013s] Loading trace points... [0s] Sorting trace points... [1.007s] Computing alignments... [29.935s] Deallocating buffers... [0.015s] Loading trace points... [0.06s] Sorting trace points... [1.183s] Computing alignments... [30.104s] Deallocating buffers... [0.013s] Loading trace points... [0.067s] Sorting trace points... [1.124s] Computing alignments... [29.675s] Deallocating buffers... [0.015s] Loading trace points... [0.08s] Sorting trace points... [1.175s] Computing alignments... [30.785s] Deallocating buffers... [0.016s] Loading trace points... [0.605s] Sorting trace points... [1.277s] Computing alignments... [32.012s] Deallocating buffers... [0.014s] Loading trace points... [0s] Sorting trace points... [1.196s] Computing alignments... [32.126s] Deallocating buffers... [0.017s] Loading trace points... [0.068s] Sorting trace points... [1.224s] Computing alignments... [32.248s] Deallocating buffers... [0.017s] Loading trace points... [0.084s] Sorting trace points... [1.241s] Computing alignments... [32.3s] Deallocating buffers... [0.017s] Loading trace points... [0.091s] Sorting trace points... [0.936s] Computing alignments... [32.189s] Deallocating buffers... [0.015s] Loading trace points... [0.085s] Sorting trace points... [1.207s] Computing alignments... [32.282s] Deallocating buffers... [0.017s] Loading trace points... [0s] Sorting trace points... [1.226s] Computing alignments... [31.991s] Deallocating buffers... [0.014s] Loading trace points... [0s] [521.617s] Deallocating reference... [0.063s] Loading reference sequences... [29.32s] Masking reference... [32.177s] Initializing dictionary... [0.077s] Initializing temporary storage... [0.007s] Building reference histograms... [32.061s] Allocating buffers... [0.001s] Processing query block 1, reference block 4/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.564s] Building query seed array... [2.084s] Computing hash join... [6.718s] Masking low complexity seeds... [0.522s] Searching alignments... [72.254s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.467s] Building query seed array... [2.889s] Computing hash join... [6.347s] Masking low complexity seeds... [0.3s] Searching alignments... [49.452s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.766s] Building query seed array... [2.755s] Computing hash join... [6.642s] Masking low complexity seeds... [0.271s] Searching alignments... [42.814s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.634s] Building query seed array... [2.221s] Computing hash join... [6.558s] Masking low complexity seeds... [0.282s] Searching alignments... [38.867s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.511s] Building query seed array... [1.951s] Computing hash join... [6.412s] Masking low complexity seeds... [0.273s] Searching alignments... [40.492s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.628s] Building query seed array... [2.377s] Computing hash join... [6.516s] Masking low complexity seeds... [0.282s] Searching alignments... [30.884s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.368s] Building query seed array... [2.478s] Computing hash join... [6.402s] Masking low complexity seeds... [0.268s] Searching alignments... [34.734s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.508s] Building query seed array... [2.078s] Computing hash join... [6.182s] Masking low complexity seeds... [0.233s] Searching alignments... [29.715s] Deallocating memory... [0s] Deallocating buffers... [1.758s] Clearing query masking... [1.547s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [6.533s] Sorting trace points... [1.183s] Computing alignments... [29.942s] Deallocating buffers... [0.014s] Loading trace points... [0.082s] Sorting trace points... [1.137s] Computing alignments... [30.227s] Deallocating buffers... [0.013s] Loading trace points... [0.042s] Sorting trace points... [1.136s] Computing alignments... [30.626s] Deallocating buffers... [0.016s] Loading trace points... [0.055s] Sorting trace points... [1.101s] Computing alignments... [29.8s] Deallocating buffers... [0.016s] Loading trace points... [0.056s] Sorting trace points... [1.026s] Computing alignments... [29.651s] Deallocating buffers... [0.015s] Loading trace points... [0.066s] Sorting trace points... [1.135s] Computing alignments... [29.95s] Deallocating buffers... [0.012s] Loading trace points... [0.056s] Sorting trace points... [1.138s] Computing alignments... [30.106s] Deallocating buffers... [0.012s] Loading trace points... [0.073s] Sorting trace points... [1.106s] Computing alignments... [29.743s] Deallocating buffers... [0.012s] Loading trace points... [0.085s] Sorting trace points... [1.115s] Computing alignments... [30.794s] Deallocating buffers... [0.013s] Loading trace points... [0.062s] Sorting trace points... [1.216s] Computing alignments... [32.05s] Deallocating buffers... [0.014s] Loading trace points... [0.084s] Sorting trace points... [1.057s] Computing alignments... [32.099s] Deallocating buffers... [0.016s] Loading trace points... [0.059s] Sorting trace points... [1.243s] Computing alignments... [32.16s] Deallocating buffers... [0.017s] Loading trace points... [0.059s] Sorting trace points... [1.216s] Computing alignments... [32.187s] Deallocating buffers... [0.017s] Loading trace points... [0.492s] Sorting trace points... [1.023s] Computing alignments... [32.109s] Deallocating buffers... [0.015s] Loading trace points... [0.069s] Sorting trace points... [1.261s] Computing alignments... [32.3s] Deallocating buffers... [0.017s] Loading trace points... [0s] Sorting trace points... [1.212s] Computing alignments... [31.982s] Deallocating buffers... [0.014s] Loading trace points... [0s] [522.24s] Deallocating reference... [0.065s] Loading reference sequences... [35.793s] Masking reference... [31.017s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.008s] Building reference histograms... [32.642s] Allocating buffers... [0s] Processing query block 1, reference block 5/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.31s] Building query seed array... [2.111s] Computing hash join... [6.909s] Masking low complexity seeds... [0.414s] Searching alignments... [73.334s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.773s] Building query seed array... [2.659s] Computing hash join... [6.481s] Masking low complexity seeds... [0.283s] Searching alignments... [46.838s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 1/2, index chunk 3/4. Building reference seed array... [14.108s] Building query seed array... [2.743s] Computing hash join... [6.999s] Masking low complexity seeds... [0.33s] Searching alignments... [42.137s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.187s] Building query seed array... [2.23s] Computing hash join... [6.61s] Masking low complexity seeds... [0.255s] Searching alignments... [39.028s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.615s] Building query seed array... [2s] Computing hash join... [6.365s] Masking low complexity seeds... [0.243s] Searching alignments... [41.404s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 2/2, index chunk 2/4. Building reference seed array... [13.306s] Building query seed array... [2.33s] Computing hash join... [6.29s] Masking low complexity seeds... [0.246s] Searching alignments... [30.547s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.579s] Building query seed array... [2.465s] Computing hash join... [6.529s] Masking low complexity seeds... [0.238s] Searching alignments... [35.492s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.023s] Building query seed array... [2.084s] Computing hash join... [6.415s] Masking low complexity seeds... [0.241s] Searching alignments... [29.333s] Deallocating memory... [0s] Deallocating buffers... [1.726s] Clearing query masking... [1.6s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [6.392s] Sorting trace points... [1.196s] Computing alignments... [29.831s] Deallocating buffers... [0.014s] Loading trace points... [0.054s] Sorting trace points... [1.138s] Computing alignments... [30.047s] Deallocating buffers... [0.013s] Loading trace points... [0.042s] Sorting trace points... [0.947s] Computing alignments... [30.375s] Deallocating buffers... [0.015s] Loading trace points... [0.073s] Sorting trace points... [1.139s] Computing alignments... [29.614s] Deallocating buffers... [0.013s] Loading trace points... [0.066s] Sorting trace points... [1.074s] Computing alignments... [29.567s] Deallocating buffers... [0.013s] Loading trace points... [0.086s] Sorting trace points... [0.85s] Computing alignments... [29.896s] Deallocating buffers... [0.014s] Loading trace points... [0.134s] Sorting trace points... [1.147s] Computing alignments... [30.563s] Deallocating buffers... [0.013s] Loading trace points... [0.078s] Sorting trace points... [0.816s] Computing alignments... [29.593s] Deallocating buffers... [0.014s] Loading trace points... [0.067s] Sorting trace points... [1.161s] Computing alignments... [30.719s] Deallocating buffers... [0.013s] Loading trace points... [0.091s] Sorting trace points... [1.222s] Computing alignments... [31.984s] Deallocating buffers... [0.013s] Loading trace points... [0.09s] Sorting trace points... [1.286s] Computing alignments... [32.152s] Deallocating buffers... [0.104s] Loading trace points... [0.071s] Sorting trace points... [1.238s] Computing alignments... [31.999s] Deallocating buffers... [0.014s] Loading trace points... [0.067s] Sorting trace points... [1.235s] Computing alignments... [32.005s] Deallocating buffers... [0.017s] Loading trace points... [0.064s] Sorting trace points... [1.226s] Computing alignments... [31.873s] Deallocating buffers... [0.014s] Loading trace points... [0.071s] Sorting trace points... [1.242s] Computing alignments... [32.17s] Deallocating buffers... [0.014s] Loading trace points... [0s] Sorting trace points... [1.226s] Computing alignments... [31.77s] Deallocating buffers... [0.013s] Loading trace points... [0s] [520.208s] Deallocating reference... [0.064s] Loading reference sequences... [30.926s] Masking reference... [30.925s] Initializing dictionary... [0.077s] Initializing temporary storage... [0.007s] Building reference histograms... [32.899s] Allocating buffers... [0s] Processing query block 1, reference block 6/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.337s] Building query seed array... [2.032s] Computing hash join... [6.643s] Masking low complexity seeds... [0.246s] Searching alignments... [72.422s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 1/2, index chunk 2/4. Building reference seed array... [13.268s] Building query seed array... [3.015s] Computing hash join... [6.477s] Masking low complexity seeds... [0.28s] Searching alignments... [45.622s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 1/2, index chunk 3/4. Building reference seed array... [14.408s] Building query seed array... [2.757s] Computing hash join... [6.026s] Masking low complexity seeds... [0.269s] Searching alignments... [41.619s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 1/2, index chunk 4/4. Building reference seed array... [11s] Building query seed array... [2.297s] Computing hash join... [5.867s] Masking low complexity seeds... [0.31s] Searching alignments... [37.035s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.898s] Building query seed array... [2.044s] Computing hash join... [5.912s] Masking low complexity seeds... [0.298s] Searching alignments... [39.629s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 2/2, index chunk 2/4. Building reference seed array... [13.318s] Building query seed array... [2.427s] Computing hash join... [6.204s] Masking low complexity seeds... [0.282s] Searching alignments... [29.858s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.759s] Building query seed array... [2.462s] Computing hash join... [5.787s] Masking low complexity seeds... [0.267s] Searching alignments... [34.867s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.313s] Building query seed array... [2.032s] Computing hash join... [6.085s] Masking low complexity seeds... [0.229s] Searching alignments... [28.064s] Deallocating memory... [0s] Deallocating buffers... [2.246s] Clearing query masking... [1.564s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [5.979s] Sorting trace points... [1.198s] Computing alignments... [29.635s] Deallocating buffers... [0.013s] Loading trace points... [0.051s] Sorting trace points... [1.081s] Computing alignments... [30.065s] Deallocating buffers... [0.015s] Loading trace points... [0.107s] Sorting trace points... [1.14s] Computing alignments... [30.163s] Deallocating buffers... [0.016s] Loading trace points... [0.09s] Sorting trace points... [1.118s] Computing alignments... [29.306s] Deallocating buffers... [0.015s] Loading trace points... [0.076s] Sorting trace points... [0.866s] Computing alignments... [29.284s] Deallocating buffers... [0.013s] Loading trace points... [0.059s] Sorting trace points... [1.12s] Computing alignments... [29.58s] Deallocating buffers... [0.013s] Loading trace points... [0.046s] Sorting trace points... [0.966s] Computing alignments... [29.881s] Deallocating buffers... [0.013s] Loading trace points... [0.06s] Sorting trace points... [0.978s] Computing alignments... [29.377s] Deallocating buffers... [0.013s] Loading trace points... [0.099s] Sorting trace points... [1.019s] Computing alignments... [30.497s] Deallocating buffers... [0.014s] Loading trace points... [0.053s] Sorting trace points... [0.892s] Computing alignments... [31.763s] Deallocating buffers... [0.015s] Loading trace points... [0.066s] Sorting trace points... [1.195s] Computing alignments... [31.825s] Deallocating buffers... [0.017s] Loading trace points... [0.108s] Sorting trace points... [1.222s] Computing alignments... [31.866s] Deallocating buffers... [0.017s] Loading trace points... [0.065s] Sorting trace points... [0.877s] Computing alignments... [31.962s] Deallocating buffers... [0.015s] Loading trace points... [0.055s] Sorting trace points... [1.219s] Computing alignments... [31.835s] Deallocating buffers... [0.014s] Loading trace points... [0.064s] Sorting trace points... [1.187s] Computing alignments... [31.87s] Deallocating buffers... [0.017s] Loading trace points... [0s] Sorting trace points... [1.228s] Computing alignments... [31.518s] Deallocating buffers... [0.017s] Loading trace points... [0s] [515.045s] Deallocating reference... [0.055s] Loading reference sequences... [29.362s] Masking reference... [32.135s] Initializing dictionary... [0.079s] Initializing temporary storage... [0.007s] Building reference histograms... [31.985s] Allocating buffers... [0s] Processing query block 1, reference block 7/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.52s] Building query seed array... [2.17s] Computing hash join... [7.13s] Masking low complexity seeds... [0.246s] Searching alignments... [75.361s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 1/2, index chunk 2/4. Building reference seed array... [13.31s] Building query seed array... [3.095s] Computing hash join... [6.958s] Masking low complexity seeds... [0.258s] Searching alignments... [49.019s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.851s] Building query seed array... [2.806s] Computing hash join... [6.403s] Masking low complexity seeds... [0.255s] Searching alignments... [43.292s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.407s] Building query seed array... [2.323s] Computing hash join... [6.747s] Masking low complexity seeds... [0.255s] Searching alignments... [38.671s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.363s] Building query seed array... [2.022s] Computing hash join... [6.584s] Masking low complexity seeds... [0.288s] Searching alignments... [41.831s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.595s] Building query seed array... [2.448s] Computing hash join... [6.169s] Masking low complexity seeds... [0.256s] Searching alignments... [30.854s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.858s] Building query seed array... [2.557s] Computing hash join... [6.214s] Masking low complexity seeds... [0.235s] Searching alignments... [35.955s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.321s] Building query seed array... [2.004s] Computing hash join... [6.232s] Masking low complexity seeds... [0.234s] Searching alignments... [30.399s] Deallocating memory... [0s] Deallocating buffers... [1.791s] Clearing query masking... [1.642s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [6.157s] Sorting trace points... [1.191s] Computing alignments... [29.733s] Deallocating buffers... [0.014s] Loading trace points... [0.068s] Sorting trace points... [0.842s] Computing alignments... [30.082s] Deallocating buffers... [0.014s] Loading trace points... [0.072s] Sorting trace points... [0.912s] Computing alignments... [30.36s] Deallocating buffers... [0.014s] Loading trace points... [0.061s] Sorting trace points... [1.101s] Computing alignments... [29.577s] Deallocating buffers... [0.013s] Loading trace points... [0.063s] Sorting trace points... [0.997s] Computing alignments... [29.566s] Deallocating buffers... [0.015s] Loading trace points... [0s] Sorting trace points... [1.126s] Computing alignments... [29.891s] Deallocating buffers... [0.013s] Loading trace points... [0.047s] Sorting trace points... [1.154s] Computing alignments... [30.075s] Deallocating buffers... [0.016s] Loading trace points... [0s] Sorting trace points... [1.107s] Computing alignments... [29.628s] Deallocating buffers... [0.015s] Loading trace points... [0.07s] Sorting trace points... [1.136s] Computing alignments... [30.701s] Deallocating buffers... [0.013s] Loading trace points... [0.061s] Sorting trace points... [1.211s] Computing alignments... [32.004s] Deallocating buffers... [0.017s] Loading trace points... [0s] Sorting trace points... [1.197s] Computing alignments... [32.071s] Deallocating buffers... [0.017s] Loading trace points... [0.071s] Sorting trace points... [1.116s] Computing alignments... [32.059s] Deallocating buffers... [0.017s] Loading trace points... [0.074s] Sorting trace points... [1.076s] Computing alignments... [32.089s] Deallocating buffers... [0.014s] Loading trace points... [0.073s] Sorting trace points... [1.221s] Computing alignments... [31.913s] Deallocating buffers... [0.017s] Loading trace points... [0.077s] Sorting trace points... [1.236s] Computing alignments... [32.138s] Deallocating buffers... [0.014s] Loading trace points... [0s] Sorting trace points... [1.219s] Computing alignments... [31.761s] Deallocating buffers... [0.014s] Loading trace points... [0s] [518.866s] Deallocating reference... [0.058s] Loading reference sequences... [29.235s] Masking reference... [32.112s] Initializing dictionary... [0.077s] Initializing temporary storage... [0.007s] Building reference histograms... [31.931s] Allocating buffers... [0s] Processing query block 1, reference block 8/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.365s] Building query seed array... [2.049s] Computing hash join... [6.887s] Masking low complexity seeds... [0.244s] Searching alignments... [74.024s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.564s] Building query seed array... [3.036s] Computing hash join... [6.699s] Masking low complexity seeds... [0.242s] Searching alignments... [46.857s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.645s] Building query seed array... [2.773s] Computing hash join... [6.179s] Masking low complexity seeds... [0.265s] Searching alignments... [43.947s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.22s] Building query seed array... [2.137s] Computing hash join... [6.506s] Masking low complexity seeds... [0.281s] Searching alignments... [38.726s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.152s] Building query seed array... [2.009s] Computing hash join... [6.462s] Masking low complexity seeds... [0.274s] Searching alignments... [39.428s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.371s] Building query seed array... [2.219s] Computing hash join... [6.492s] Masking low complexity seeds... [0.26s] Searching alignments... [31.853s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.605s] Building query seed array... [2.372s] Computing hash join... [6.074s] Masking low complexity seeds... [0.236s] Searching alignments... [35.215s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.49s] Building query seed array... [2.095s] Computing hash join... [6.05s] Masking low complexity seeds... [0.227s] Searching alignments... [28.732s] Deallocating memory... [0s] Deallocating buffers... [1.882s] Clearing query masking... [1.654s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [6.123s] Sorting trace points... [1.221s] Computing alignments... [30.643s] Deallocating buffers... [0.014s] Loading trace points... [0.067s] Sorting trace points... [1.148s] Computing alignments... [29.947s] Deallocating buffers... [0.016s] Loading trace points... [0.864s] Sorting trace points... [1.256s] Computing alignments... [30.288s] Deallocating buffers... [0.013s] Loading trace points... [0.041s] Sorting trace points... [1.084s] Computing alignments... [29.58s] Deallocating buffers... [0.015s] Loading trace points... [0.088s] Sorting trace points... [0.895s] Computing alignments... [29.515s] Deallocating buffers... [0.015s] Loading trace points... [0.001s] Sorting trace points... [1.141s] Computing alignments... [29.856s] Deallocating buffers... [0.013s] Loading trace points... [0.076s] Sorting trace points... [1.079s] Computing alignments... [30.086s] Deallocating buffers... [0.013s] Loading trace points... [0.001s] Sorting trace points... [1.16s] Computing alignments... [29.575s] Deallocating buffers... [0.012s] Loading trace points... [0.055s] Sorting trace points... [0.887s] Computing alignments... [30.808s] Deallocating buffers... [0.015s] Loading trace points... [0.067s] Sorting trace points... [1.154s] Computing alignments... [31.932s] Deallocating buffers... [0.016s] Loading trace points... [0.002s] Sorting trace points... [1.213s] Computing alignments... [32.104s] Deallocating buffers... [0.013s] Loading trace points... [0.065s] Sorting trace points... [0.958s] Computing alignments... [32.136s] Deallocating buffers... [0.016s] Loading trace points... [0.083s] Sorting trace points... [1.208s] Computing alignments... [32.211s] Deallocating buffers... [0.014s] Loading trace points... [0.091s] Sorting trace points... [1.244s] Computing alignments... [32.049s] Deallocating buffers... [0.017s] Loading trace points... [0.093s] Sorting trace points... [1.199s] Computing alignments... [32.228s] Deallocating buffers... [0.021s] Loading trace points... [0s] Sorting trace points... [1.206s] Computing alignments... [31.812s] Deallocating buffers... [0.017s] Loading trace points... [0s] [520.984s] Deallocating reference... [0.063s] Loading reference sequences... [34.198s] Masking reference... [30.99s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.008s] Building reference histograms... [33.277s] Allocating buffers... [0s] Processing query block 1, reference block 9/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.229s] Building query seed array... [2.091s] Computing hash join... [7.057s] Masking low complexity seeds... [0.261s] Searching alignments... [74.056s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.678s] Building query seed array... [3.063s] Computing hash join... [7.028s] Masking low complexity seeds... [0.253s] Searching alignments... [46.728s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 1/2, index chunk 3/4. Building reference seed array... [14.026s] Building query seed array... [2.784s] Computing hash join... [6.399s] Masking low complexity seeds... [0.288s] Searching alignments... [42.029s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.749s] Building query seed array... [2.24s] Computing hash join... [6.742s] Masking low complexity seeds... [0.278s] Searching alignments... [37.254s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.114s] Building query seed array... [2.156s] Computing hash join... [6.493s] Masking low complexity seeds... [0.278s] Searching alignments... [40.065s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 2/2, index chunk 2/4. Building reference seed array... [13.202s] Building query seed array... [2.388s] Computing hash join... [6.743s] Masking low complexity seeds... [0.243s] Searching alignments... [30.299s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.789s] Building query seed array... [2.541s] Computing hash join... [6.915s] Masking low complexity seeds... [0.249s] Searching alignments... [36.153s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.654s] Building query seed array... [2.061s] Computing hash join... [6.615s] Masking low complexity seeds... [0.228s] Searching alignments... [30.076s] Deallocating memory... [0s] Deallocating buffers... [2.034s] Clearing query masking... [1.593s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [6.457s] Sorting trace points... [1.201s] Computing alignments... [29.656s] Deallocating buffers... [0.015s] Loading trace points... [0.067s] Sorting trace points... [1.009s] Computing alignments... [30.128s] Deallocating buffers... [0.041s] Loading trace points... [0.049s] Sorting trace points... [1.184s] Computing alignments... [30.442s] Deallocating buffers... [0.013s] Loading trace points... [0.282s] Sorting trace points... [1.067s] Computing alignments... [29.489s] Deallocating buffers... [0.014s] Loading trace points... [0.056s] Sorting trace points... [1.106s] Computing alignments... [29.421s] Deallocating buffers... [0.012s] Loading trace points... [0.085s] Sorting trace points... [0.987s] Computing alignments... [29.705s] Deallocating buffers... [0.013s] Loading trace points... [0.061s] Sorting trace points... [1.144s] Computing alignments... [29.926s] Deallocating buffers... [0.012s] Loading trace points... [0.068s] Sorting trace points... [1.101s] Computing alignments... [29.569s] Deallocating buffers... [0.013s] Loading trace points... [0.085s] Sorting trace points... [1.164s] Computing alignments... [30.692s] Deallocating buffers... [0.013s] Loading trace points... [0.086s] Sorting trace points... [1.244s] Computing alignments... [31.959s] Deallocating buffers... [0.014s] Loading trace points... [0.073s] Sorting trace points... [1.233s] Computing alignments... [32.143s] Deallocating buffers... [0.014s] Loading trace points... [0.064s] Sorting trace points... [1.224s] Computing alignments... [32.044s] Deallocating buffers... [0.017s] Loading trace points... [0.083s] Sorting trace points... [0.877s] Computing alignments... [32.045s] Deallocating buffers... [0.015s] Loading trace points... [0.085s] Sorting trace points... [1.101s] Computing alignments... [31.916s] Deallocating buffers... [0.016s] Loading trace points... [0.082s] Sorting trace points... [1.202s] Computing alignments... [31.98s] Deallocating buffers... [0.017s] Loading trace points... [0s] Sorting trace points... [1.164s] Computing alignments... [31.65s] Deallocating buffers... [0.014s] Loading trace points... [0s] [518.92s] Deallocating reference... [0.056s] Loading reference sequences... [32.82s] Masking reference... [31.877s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.007s] Building reference histograms... [32.142s] Allocating buffers... [0s] Processing query block 1, reference block 10/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.444s] Building query seed array... [2.027s] Computing hash join... [6.98s] Masking low complexity seeds... [0.246s] Searching alignments... [74.782s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.581s] Building query seed array... [2.972s] Computing hash join... [6.873s] Masking low complexity seeds... [0.25s] Searching alignments... [48.84s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.107s] Building query seed array... [2.73s] Computing hash join... [6.469s] Masking low complexity seeds... [0.274s] Searching alignments... [41.916s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.537s] Building query seed array... [2.279s] Computing hash join... [6.664s] Masking low complexity seeds... [0.269s] Searching alignments... [37.212s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.311s] Building query seed array... [1.992s] Computing hash join... [6.207s] Masking low complexity seeds... [0.265s] Searching alignments... [41.62s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.889s] Building query seed array... [2.424s] Computing hash join... [6.677s] Masking low complexity seeds... [0.239s] Searching alignments... [30.758s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.955s] Building query seed array... [2.489s] Computing hash join... [6.749s] Masking low complexity seeds... [0.235s] Searching alignments... [34.498s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.134s] Building query seed array... [2.023s] Computing hash join... [6.692s] Masking low complexity seeds... [0.241s] Searching alignments... [30.503s] Deallocating memory... [0s] Deallocating buffers... [1.964s] Clearing query masking... [1.843s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [6.306s] Sorting trace points... [1.215s] Computing alignments... [29.506s] Deallocating buffers... [0.012s] Loading trace points... [0.059s] Sorting trace points... [1.135s] Computing alignments... [29.887s] Deallocating buffers... [0.013s] Loading trace points... [0.051s] Sorting trace points... [1.175s] Computing alignments... [30.126s] Deallocating buffers... [0.013s] Loading trace points... [0.048s] Sorting trace points... [1.085s] Computing alignments... [29.382s] Deallocating buffers... [0.012s] Loading trace points... [0.082s] Sorting trace points... [1.147s] Computing alignments... [29.361s] Deallocating buffers... [0.012s] Loading trace points... [0.081s] Sorting trace points... [0.933s] Computing alignments... [29.674s] Deallocating buffers... [0.015s] Loading trace points... [0.051s] Sorting trace points... [1.128s] Computing alignments... [29.959s] Deallocating buffers... [0.013s] Loading trace points... [0.28s] Sorting trace points... [0.983s] Computing alignments... [29.509s] Deallocating buffers... [0.013s] Loading trace points... [0.096s] Sorting trace points... [1.147s] Computing alignments... [30.578s] Deallocating buffers... [0.016s] Loading trace points... [0.132s] Sorting trace points... [0.996s] Computing alignments... [31.868s] Deallocating buffers... [0.014s] Loading trace points... [0.112s] Sorting trace points... [1.277s] Computing alignments... [32.111s] Deallocating buffers... [0.017s] Loading trace points... [0.077s] Sorting trace points... [1.231s] Computing alignments... [32.03s] Deallocating buffers... [0.014s] Loading trace points... [0.073s] Sorting trace points... [1.135s] Computing alignments... [32.128s] Deallocating buffers... [0.014s] Loading trace points... [0.102s] Sorting trace points... [1.211s] Computing alignments... [31.847s] Deallocating buffers... [0.013s] Loading trace points... [0.079s] Sorting trace points... [1.225s] Computing alignments... [32.104s] Deallocating buffers... [0.024s] Loading trace points... [0s] Sorting trace points... [1.222s] Computing alignments... [31.68s] Deallocating buffers... [0.014s] Loading trace points... [0s] [518.059s] Deallocating reference... [0.063s] Loading reference sequences... [29.394s] Masking reference... [32.166s] Initializing dictionary... [0.079s] Initializing temporary storage... [0.006s] Building reference histograms... [32.112s] Allocating buffers... [0s] Processing query block 1, reference block 11/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.395s] Building query seed array... [2.13s] Computing hash join... [6.355s] Masking low complexity seeds... [0.26s] Searching alignments... [71.758s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 1/2, index chunk 2/4. Building reference seed array... [13.413s] Building query seed array... [2.911s] Computing hash join... [6.112s] Masking low complexity seeds... [0.34s] Searching alignments... [47.154s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 1/2, index chunk 3/4. Building reference seed array... [14.292s] Building query seed array... [2.714s] Computing hash join... [6.462s] Masking low complexity seeds... [0.261s] Searching alignments... [43.328s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.405s] Building query seed array... [2.279s] Computing hash join... [6.12s] Masking low complexity seeds... [0.25s] Searching alignments... [37.424s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.571s] Building query seed array... [2.032s] Computing hash join... [6.038s] Masking low complexity seeds... [0.232s] Searching alignments... [40.189s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.856s] Building query seed array... [2.334s] Computing hash join... [6.044s] Masking low complexity seeds... [0.299s] Searching alignments... [30.674s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 2/2, index chunk 3/4. Building reference seed array... [14.216s] Building query seed array... [2.432s] Computing hash join... [6.142s] Masking low complexity seeds... [0.243s] Searching alignments... [36.199s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.99s] Building query seed array... [2.025s] Computing hash join... [6.362s] Masking low complexity seeds... [0.241s] Searching alignments... [28.683s] Deallocating memory... [0s] Deallocating buffers... [2.24s] Clearing query masking... [1.553s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [6.293s] Sorting trace points... [1.201s] Computing alignments... [29.623s] Deallocating buffers... [0.016s] Loading trace points... [0.046s] Sorting trace points... [1.117s] Computing alignments... [30.159s] Deallocating buffers... [0.023s] Loading trace points... [0.054s] Sorting trace points... [1.196s] Computing alignments... [30.775s] Deallocating buffers... [0.016s] Loading trace points... [0s] Sorting trace points... [1.002s] Computing alignments... [29.291s] Deallocating buffers... [0.015s] Loading trace points... [0.078s] Sorting trace points... [1.112s] Computing alignments... [29.222s] Deallocating buffers... [0.013s] Loading trace points... [0.058s] Sorting trace points... [1.126s] Computing alignments... [29.508s] Deallocating buffers... [0.013s] Loading trace points... [0.084s] Sorting trace points... [1.117s] Computing alignments... [29.906s] Deallocating buffers... [0.013s] Loading trace points... [0.087s] Sorting trace points... [1.128s] Computing alignments... [29.36s] Deallocating buffers... [0.012s] Loading trace points... [0.052s] Sorting trace points... [1.166s] Computing alignments... [30.46s] Deallocating buffers... [0.016s] Loading trace points... [0.045s] Sorting trace points... [1.201s] Computing alignments... [31.786s] Deallocating buffers... [0.017s] Loading trace points... [0.082s] Sorting trace points... [1.089s] Computing alignments... [31.917s] Deallocating buffers... [0.016s] Loading trace points... [0.852s] Sorting trace points... [1.283s] Computing alignments... [31.984s] Deallocating buffers... [0.014s] Loading trace points... [0.054s] Sorting trace points... [1.189s] Computing alignments... [31.992s] Deallocating buffers... [0.017s] Loading trace points... [0.056s] Sorting trace points... [1.21s] Computing alignments... [31.802s] Deallocating buffers... [0.017s] Loading trace points... [0.068s] Sorting trace points... [1.274s] Computing alignments... [31.909s] Deallocating buffers... [0.055s] Loading trace points... [0s] Sorting trace points... [1.243s] Computing alignments... [31.463s] Deallocating buffers... [0.017s] Loading trace points... [0s] [518.163s] Deallocating reference... [0.056s] Loading reference sequences... [29.157s] Masking reference... [30.926s] Initializing dictionary... [0.077s] Initializing temporary storage... [0.006s] Building reference histograms... [33.151s] Allocating buffers... [0s] Processing query block 1, reference block 12/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.049s] Building query seed array... [2.053s] Computing hash join... [6.902s] Masking low complexity seeds... [0.251s] Searching alignments... [74.164s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.932s] Building query seed array... [2.948s] Computing hash join... [6.96s] Masking low complexity seeds... [0.27s] Searching alignments... [47.55s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.449s] Building query seed array... [2.702s] Computing hash join... [6.476s] Masking low complexity seeds... [0.288s] Searching alignments... [44.429s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.315s] Building query seed array... [2.263s] Computing hash join... [6.812s] Masking low complexity seeds... [0.299s] Searching alignments... [39.622s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.594s] Building query seed array... [2.065s] Computing hash join... [6.567s] Masking low complexity seeds... [0.26s] Searching alignments... [40.378s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.907s] Building query seed array... [2.276s] Computing hash join... [6.706s] Masking low complexity seeds... [0.226s] Searching alignments... [31.233s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.528s] Building query seed array... [2.556s] Computing hash join... [6.85s] Masking low complexity seeds... [0.231s] Searching alignments... [34.887s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.378s] Building query seed array... [1.988s] Computing hash join... [6.905s] Masking low complexity seeds... [0.242s] Searching alignments... [30s] Deallocating memory... [0s] Deallocating buffers... [2.032s] Clearing query masking... [1.572s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [6.142s] Sorting trace points... [1.214s] Computing alignments... [29.799s] Deallocating buffers... [0.048s] Loading trace points... [0.055s] Sorting trace points... [1.103s] Computing alignments... [30.118s] Deallocating buffers... [0.013s] Loading trace points... [0.06s] Sorting trace points... [1.162s] Computing alignments... [30.304s] Deallocating buffers... [0.013s] Loading trace points... [0.047s] Sorting trace points... [1.041s] Computing alignments... [29.649s] Deallocating buffers... [0.013s] Loading trace points... [0.059s] Sorting trace points... [1.088s] Computing alignments... [29.509s] Deallocating buffers... [0.015s] Loading trace points... [0.067s] Sorting trace points... [1.126s] Computing alignments... [29.842s] Deallocating buffers... [0.016s] Loading trace points... [0.057s] Sorting trace points... [1.156s] Computing alignments... [30.088s] Deallocating buffers... [0.016s] Loading trace points... [0.079s] Sorting trace points... [1.095s] Computing alignments... [29.677s] Deallocating buffers... [0.015s] Loading trace points... [0.066s] Sorting trace points... [0.876s] Computing alignments... [30.788s] Deallocating buffers... [0.015s] Loading trace points... [0.092s] Sorting trace points... [0.968s] Computing alignments... [31.987s] Deallocating buffers... [0.015s] Loading trace points... [0.076s] Sorting trace points... [1.259s] Computing alignments... [32.108s] Deallocating buffers... [0.017s] Loading trace points... [0.106s] Sorting trace points... [1.215s] Computing alignments... [32.119s] Deallocating buffers... [0.017s] Loading trace points... [0.065s] Sorting trace points... [1.265s] Computing alignments... [32.142s] Deallocating buffers... [0.014s] Loading trace points... [0.079s] Sorting trace points... [1.183s] Computing alignments... [32.068s] Deallocating buffers... [0.014s] Loading trace points... [0.083s] Sorting trace points... [1.224s] Computing alignments... [32.207s] Deallocating buffers... [0.014s] Loading trace points... [0s] Sorting trace points... [1.209s] Computing alignments... [31.897s] Deallocating buffers... [0.017s] Loading trace points... [0s] [520.072s] Deallocating reference... [0.059s] Loading reference sequences... [29.267s] Masking reference... [32.121s] Initializing dictionary... [0.077s] Initializing temporary storage... [0.007s] Building reference histograms... [31.965s] Allocating buffers... [0s] Processing query block 1, reference block 13/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.068s] Building query seed array... [2.028s] Computing hash join... [7.18s] Masking low complexity seeds... [0.257s] Searching alignments... [74.728s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 1/2, index chunk 2/4. Building reference seed array... [13.445s] Building query seed array... [3.143s] Computing hash join... [6.98s] Masking low complexity seeds... [0.266s] Searching alignments... [48.003s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.992s] Building query seed array... [2.702s] Computing hash join... [6.419s] Masking low complexity seeds... [0.27s] Searching alignments... [42.255s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.865s] Building query seed array... [2.314s] Computing hash join... [6.765s] Masking low complexity seeds... [0.306s] Searching alignments... [37.368s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.261s] Building query seed array... [2.005s] Computing hash join... [6.199s] Masking low complexity seeds... [0.286s] Searching alignments... [40.982s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 2/2, index chunk 2/4. Building reference seed array... [13.085s] Building query seed array... [2.271s] Computing hash join... [6.557s] Masking low complexity seeds... [0.249s] Searching alignments... [30.518s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.845s] Building query seed array... [2.506s] Computing hash join... [6.286s] Masking low complexity seeds... [0.277s] Searching alignments... [35.241s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.771s] Building query seed array... [2.132s] Computing hash join... [6.338s] Masking low complexity seeds... [0.242s] Searching alignments... [29.503s] Deallocating memory... [0s] Deallocating buffers... [2.126s] Clearing query masking... [1.615s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [6.1s] Sorting trace points... [1.205s] Computing alignments... [29.702s] Deallocating buffers... [0.013s] Loading trace points... [0.079s] Sorting trace points... [1.155s] Computing alignments... [30.014s] Deallocating buffers... [0.013s] Loading trace points... [0.047s] Sorting trace points... [1.11s] Computing alignments... [30.348s] Deallocating buffers... [0.013s] Loading trace points... [0.048s] Sorting trace points... [1.11s] Computing alignments... [29.353s] Deallocating buffers... [0.012s] Loading trace points... [0.058s] Sorting trace points... [1.099s] Computing alignments... [29.327s] Deallocating buffers... [0.016s] Loading trace points... [0.098s] Sorting trace points... [1.096s] Computing alignments... [29.65s] Deallocating buffers... [0.016s] Loading trace points... [0.049s] Sorting trace points... [1.119s] Computing alignments... [29.908s] Deallocating buffers... [0.016s] Loading trace points... [0.092s] Sorting trace points... [0.859s] Computing alignments... [29.463s] Deallocating buffers... [0.014s] Loading trace points... [0.097s] Sorting trace points... [1.112s] Computing alignments... [30.474s] Deallocating buffers... [0.016s] Loading trace points... [0.081s] Sorting trace points... [0.887s] Computing alignments... [31.784s] Deallocating buffers... [0.015s] Loading trace points... [0.087s] Sorting trace points... [1.214s] Computing alignments... [31.874s] Deallocating buffers... [0.017s] Loading trace points... [0.077s] Sorting trace points... [1.245s] Computing alignments... [32.012s] Deallocating buffers... [0.017s] Loading trace points... [0.061s] Sorting trace points... [1.189s] Computing alignments... [31.943s] Deallocating buffers... [0.013s] Loading trace points... [0.065s] Sorting trace points... [1.242s] Computing alignments... [31.799s] Deallocating buffers... [0.014s] Loading trace points... [0.084s] Sorting trace points... [1.226s] Computing alignments... [31.995s] Deallocating buffers... [0.046s] Loading trace points... [0s] Sorting trace points... [1.212s] Computing alignments... [31.637s] Deallocating buffers... [0.014s] Loading trace points... [0s] [516.95s] Deallocating reference... [0.055s] Loading reference sequences... [25.307s] Masking reference... [25.022s] Initializing dictionary... [0.062s] Initializing temporary storage... [0.007s] Building reference histograms... [26.522s] Allocating buffers... [0s] Processing query block 1, reference block 14/14, shape 1/2, index chunk 1/4. Building reference seed array... [8.221s] Building query seed array... [2.056s] Computing hash join... [4.707s] Masking low complexity seeds... [0.244s] Searching alignments... [59.665s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 1/2, index chunk 2/4. Building reference seed array... [10.441s] Building query seed array... [2.96s] Computing hash join... [4.688s] Masking low complexity seeds... [0.254s] Searching alignments... [38.384s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 1/2, index chunk 3/4. Building reference seed array... [10.98s] Building query seed array... [2.69s] Computing hash join... [4.921s] Masking low complexity seeds... [0.237s] Searching alignments... [34.009s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 1/2, index chunk 4/4. Building reference seed array... [8.19s] Building query seed array... [2.278s] Computing hash join... [5.009s] Masking low complexity seeds... [0.24s] Searching alignments... [30.6s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 2/2, index chunk 1/4. Building reference seed array... [8.506s] Building query seed array... [2.077s] Computing hash join... [4.734s] Masking low complexity seeds... [0.23s] Searching alignments... [33.993s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 2/2, index chunk 2/4. Building reference seed array... [10.3s] Building query seed array... [2.379s] Computing hash join... [4.785s] Masking low complexity seeds... [0.226s] Searching alignments... [25.536s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 2/2, index chunk 3/4. Building reference seed array... [11.163s] Building query seed array... [2.536s] Computing hash join... [4.578s] Masking low complexity seeds... [0.232s] Searching alignments... [27.754s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 2/2, index chunk 4/4. Building reference seed array... [8.284s] Building query seed array... [2.073s] Computing hash join... [4.69s] Masking low complexity seeds... [0.307s] Searching alignments... [24.204s] Deallocating memory... [0s] Deallocating buffers... [1.158s] Clearing query masking... [1.525s] Opening temporary output file... [0.002s] Computing alignments... Loading trace points... [10.302s] Sorting trace points... [2.021s] Computing alignments... [47.376s] Deallocating buffers... [0.024s] Loading trace points... [0.051s] Sorting trace points... [1.852s] Computing alignments... [47.445s] Deallocating buffers... [0.212s] Loading trace points... [0.139s] Sorting trace points... [1.92s] Computing alignments... [46.954s] Deallocating buffers... [0.025s] Loading trace points... [0.136s] Sorting trace points... [1.504s] Computing alignments... [47.338s] Deallocating buffers... [0.024s] Loading trace points... [0.062s] Sorting trace points... [1.548s] Computing alignments... [49.683s] Deallocating buffers... [0.023s] Loading trace points... [0.085s] Sorting trace points... [2.256s] Computing alignments... [50.83s] Deallocating buffers... [0.163s] Loading trace points... [0.105s] Sorting trace points... [1.739s] Computing alignments... [50.817s] Deallocating buffers... [0.025s] Loading trace points... [0s] Sorting trace points... [2.144s] Computing alignments... [50.587s] Deallocating buffers... [0.271s] Loading trace points... [0s] [417.907s] Deallocating reference... [0.053s] Loading reference sequences... [0.067s] Deallocating buffers... [0s] Joining output blocks... Joining output blocks... [2117.15s] [2117.15s] Deallocating queries... [0.074s] Loading query sequences... [0s] Closing the input file... [0s] Closing the output file... Loading dictionary... [3.454s] [4.646s] Closing the database... [0s] Cleaning up... [0s] Total time = 17783.5s Reported 2329955926 pairwise alignments, 2329955926 HSPs. 13442094 queries aligned. DIAMOND BLASTx on /gscratch/srlab/sam/data/P_verrucosa/RNAseq/E2_R2.fastp-trim.20230215.fq.gz complete: E2_R2.blastx.meganized.daa Now MEGANizing E2_R2.blastx.meganized.daa Version MEGAN Community Edition (version 6.22.0, built 19 Feb 2022) Author(s) Daniel H. Huson Copyright (C) 2022 Daniel H. Huson. This program comes with ABSOLUTELY NO WARRANTY. Java version: 17.0.2 Functional classifications to use: EC, EGGNOG, GTDB, INTERPRO2GO, SEED Loading ncbi.map: 2,396,736 Loading ncbi.tre: 2,396,740 Loading ec.map: 8,200 Loading ec.tre: 8,204 Loading eggnog.map: 30,875 Loading eggnog.tre: 30,986 Loading gtdb.map: 240,103 Loading gtdb.tre: 240,107 Loading interpro2go.map: 14,242 Loading interpro2go.tre: 28,907 Loading seed.map: 961 Loading seed.tre: 962 Meganizing: E2_R2.blastx.meganized.daa Meganizing init Annotating DAA file using FAST mode (accession database and first accession per line) Annotating references 10% 20% 30% 40% 50% 60% 70% 100% (491.7s) Writing 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (1.4s) Binning reads Initializing... Initializing binning... Using 'Naive LCA' algorithm for binning: Taxonomy Using Best-Hit algorithm for binning: SEED Using Best-Hit algorithm for binning: EGGNOG Using 'Naive LCA' algorithm for binning: GTDB Using Best-Hit algorithm for binning: EC Using Best-Hit algorithm for binning: INTERPRO2GO Binning reads... Binning reads Analyzing alignments 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (4,652.7s) Total reads: 13,442,094 With hits: 13,442,094 Alignments: 2,326,450,198 Assig. Taxonomy: 12,394,391 Assig. SEED: 96,500 Assig. EGGNOG: 41,185 Assig. GTDB: 343,339 Assig. EC: 2,118,867 Assig. INTERPRO2GO: 1,133,722 MinSupport set to: 6721 Binning reads Applying min-support & disabled filter to Taxonomy... 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (0.5s) Min-supp. changes: 3,532 Binning reads Applying min-support & disabled filter to GTDB... 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (9.1s) Min-supp. changes: 2,726 Binning reads Writing classification tables 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (27.6s) Binning reads Syncing 100% (0.3s) Class. Taxonomy: 60 Class. SEED: 459 Class. EGGNOG: 1,637 Class. GTDB: 15 Class. EC: 2,207 Class. INTERPRO2GO: 7,502 Total time: 5,191s Peak memory: 37.3 of 195.3G MEGANization of E2_R2.blastx.meganized.daa completed. Generating MD5 checksum for /gscratch/srlab/sam/data/P_verrucosa/RNAseq/E3_R1.fastp-trim.20230215.fq.gz... f2b558e28791a551216dab5b2dd482cf /gscratch/srlab/sam/data/P_verrucosa/RNAseq/E3_R1.fastp-trim.20230215.fq.gz Running DIAMOND BLASTx on /gscratch/srlab/sam/data/P_verrucosa/RNAseq/E3_R1.fastp-trim.20230215.fq.gz. diamond v2.1.1.155 (C) Max Planck Society for the Advancement of Science Documentation, support and updates available at http://www.diamondsearch.org Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021) #CPU threads: 40 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: Percentage range of top alignment score to report hits: 5 Opening the database... [0.254s] Database: /gscratch/srlab/blastdbs/20230215-ncbi-nr/20230215-ncbi-nr.dmnd (type: Diamond database, sequences: 526308523, letters: 207134680681) Block size = 15000000000 Opening the input file... [0.712s] Opening the output file... [0s] Loading query sequences... [81.339s] Masking queries... [20.045s] Algorithm: Double-indexed Building query histograms... [20.023s] Loading reference sequences... [29.149s] Masking reference... [32.091s] Initializing dictionary... [0.08s] Initializing temporary storage... [0.008s] Building reference histograms... [31.818s] Allocating buffers... [0.001s] Processing query block 1, reference block 1/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.31s] Building query seed array... [2.222s] Computing hash join... [6.555s] Masking low complexity seeds... [0.235s] Searching alignments... [91.398s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.666s] Building query seed array... [3.179s] Computing hash join... [6.329s] Masking low complexity seeds... [0.238s] Searching alignments... [62.843s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.526s] Building query seed array... [2.857s] Computing hash join... [7.147s] Masking low complexity seeds... [0.23s] Searching alignments... [49.505s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.588s] Building query seed array... [2.527s] Computing hash join... [6.389s] Masking low complexity seeds... [0.246s] Searching alignments... [42.501s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.412s] Building query seed array... [2.141s] Computing hash join... [6.555s] Masking low complexity seeds... [0.209s] Searching alignments... [46.049s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.612s] Building query seed array... [2.61s] Computing hash join... [6.231s] Masking low complexity seeds... [0.206s] Searching alignments... [34.853s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.946s] Building query seed array... [2.616s] Computing hash join... [6.287s] Masking low complexity seeds... [0.216s] Searching alignments... [39.541s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 2/2, index chunk 4/4. Building reference seed array... [9.967s] Building query seed array... [2.196s] Computing hash join... [6.342s] Masking low complexity seeds... [0.228s] Searching alignments... [34.425s] Deallocating memory... [0s] Deallocating buffers... [1.631s] Clearing query masking... [1.759s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [8.568s] Sorting trace points... [1.342s] Computing alignments... [33.5s] Deallocating buffers... [0.016s] Loading trace points... [0.059s] Sorting trace points... [1.267s] Computing alignments... [33.169s] Deallocating buffers... [0.014s] Loading trace points... [0.076s] Sorting trace points... [0.953s] Computing alignments... [33.473s] Deallocating buffers... [0.016s] Loading trace points... [0.084s] Sorting trace points... [1s] Computing alignments... [33.081s] Deallocating buffers... [0.016s] Loading trace points... [0.058s] Sorting trace points... [1.253s] Computing alignments... [32.738s] Deallocating buffers... [0.014s] Loading trace points... [0.061s] Sorting trace points... [1.24s] Computing alignments... [32.927s] Deallocating buffers... [0.017s] Loading trace points... [0.084s] Sorting trace points... [1.456s] Computing alignments... [33.369s] Deallocating buffers... [0.155s] Loading trace points... [0.073s] Sorting trace points... [1.184s] Computing alignments... [33.105s] Deallocating buffers... [0.017s] Loading trace points... [0.041s] Sorting trace points... [1.333s] Computing alignments... [33.807s] Deallocating buffers... [0.018s] Loading trace points... [0.056s] Sorting trace points... [1.358s] Computing alignments... [34.806s] Deallocating buffers... [0.014s] Loading trace points... [0.056s] Sorting trace points... [1.386s] Computing alignments... [34.996s] Deallocating buffers... [0.018s] Loading trace points... [0.056s] Sorting trace points... [1.345s] Computing alignments... [34.996s] Deallocating buffers... [0.015s] Loading trace points... [0.064s] Sorting trace points... [1.291s] Computing alignments... [34.898s] Deallocating buffers... [0.015s] Loading trace points... [0.068s] Sorting trace points... [1.386s] Computing alignments... [34.818s] Deallocating buffers... [0.018s] Loading trace points... [0.046s] Sorting trace points... [1.412s] Computing alignments... [35.126s] Deallocating buffers... [0.07s] Loading trace points... [0s] Sorting trace points... [1.307s] Computing alignments... [34.599s] Deallocating buffers... [0.018s] Loading trace points... [0s] [574.001s] Deallocating reference... [0.056s] Loading reference sequences... [32.069s] Masking reference... [31.158s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.008s] Building reference histograms... [33.017s] Allocating buffers... [0.001s] Processing query block 1, reference block 2/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.172s] Building query seed array... [2.251s] Computing hash join... [6.971s] Masking low complexity seeds... [0.534s] Searching alignments... [87.774s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 1/2, index chunk 2/4. Building reference seed array... [13.391s] Building query seed array... [2.882s] Computing hash join... [6.809s] Masking low complexity seeds... [0.219s] Searching alignments... [56.132s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.696s] Building query seed array... [2.934s] Computing hash join... [6.929s] Masking low complexity seeds... [0.239s] Searching alignments... [48.944s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.562s] Building query seed array... [2.328s] Computing hash join... [6.673s] Masking low complexity seeds... [0.23s] Searching alignments... [44.311s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.355s] Building query seed array... [2.235s] Computing hash join... [6.296s] Masking low complexity seeds... [0.225s] Searching alignments... [45.756s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.437s] Building query seed array... [2.527s] Computing hash join... [6.573s] Masking low complexity seeds... [0.254s] Searching alignments... [33.584s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.595s] Building query seed array... [2.656s] Computing hash join... [6.752s] Masking low complexity seeds... [0.28s] Searching alignments... [38.742s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.276s] Building query seed array... [2.14s] Computing hash join... [6.693s] Masking low complexity seeds... [0.293s] Searching alignments... [34.295s] Deallocating memory... [0s] Deallocating buffers... [1.611s] Clearing query masking... [1.702s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [6.645s] Sorting trace points... [1.326s] Computing alignments... [32.938s] Deallocating buffers... [0.014s] Loading trace points... [0.072s] Sorting trace points... [1.271s] Computing alignments... [32.792s] Deallocating buffers... [0.014s] Loading trace points... [0.065s] Sorting trace points... [1.247s] Computing alignments... [33.24s] Deallocating buffers... [0.014s] Loading trace points... [0.758s] Sorting trace points... [1.37s] Computing alignments... [32.896s] Deallocating buffers... [0.018s] Loading trace points... [0.059s] Sorting trace points... [1.304s] Computing alignments... [32.531s] Deallocating buffers... [0.127s] Loading trace points... [0.001s] Sorting trace points... [1.323s] Computing alignments... [32.708s] Deallocating buffers... [0.033s] Loading trace points... [0.089s] Sorting trace points... [1.276s] Computing alignments... [33.146s] Deallocating buffers... [0.014s] Loading trace points... [0.076s] Sorting trace points... [1.237s] Computing alignments... [32.999s] Deallocating buffers... [0.015s] Loading trace points... [0.079s] Sorting trace points... [1.043s] Computing alignments... [33.431s] Deallocating buffers... [0.016s] Loading trace points... [0.069s] Sorting trace points... [1.379s] Computing alignments... [34.506s] Deallocating buffers... [0.044s] Loading trace points... [0.05s] Sorting trace points... [1.373s] Computing alignments... [34.764s] Deallocating buffers... [0.015s] Loading trace points... [0.049s] Sorting trace points... [1.115s] Computing alignments... [34.593s] Deallocating buffers... [0.015s] Loading trace points... [0.056s] Sorting trace points... [1.397s] Computing alignments... [34.548s] Deallocating buffers... [0.019s] Loading trace points... [0.078s] Sorting trace points... [1.361s] Computing alignments... [34.372s] Deallocating buffers... [0.015s] Loading trace points... [0.054s] Sorting trace points... [1.318s] Computing alignments... [34.679s] Deallocating buffers... [0.048s] Loading trace points... [0s] Sorting trace points... [1.293s] Computing alignments... [34.145s] Deallocating buffers... [0.015s] Loading trace points... [0s] [568.48s] Deallocating reference... [0.057s] Loading reference sequences... [30.136s] Masking reference... [31.656s] Initializing dictionary... [0.079s] Initializing temporary storage... [0.008s] Building reference histograms... [31.86s] Allocating buffers... [0s] Processing query block 1, reference block 3/14, shape 1/2, index chunk 1/4. Building reference seed array... [9.845s] Building query seed array... [2.235s] Computing hash join... [6.875s] Masking low complexity seeds... [0.225s] Searching alignments... [89.801s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.547s] Building query seed array... [2.935s] Computing hash join... [6.651s] Masking low complexity seeds... [0.232s] Searching alignments... [59.225s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.568s] Building query seed array... [3.015s] Computing hash join... [7.119s] Masking low complexity seeds... [0.361s] Searching alignments... [49.727s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.498s] Building query seed array... [2.504s] Computing hash join... [6.37s] Masking low complexity seeds... [0.249s] Searching alignments... [42.923s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.222s] Building query seed array... [2.166s] Computing hash join... [6.575s] Masking low complexity seeds... [0.218s] Searching alignments... [46.842s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.313s] Building query seed array... [2.544s] Computing hash join... [6.425s] Masking low complexity seeds... [0.216s] Searching alignments... [33.797s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.524s] Building query seed array... [2.611s] Computing hash join... [6.226s] Masking low complexity seeds... [0.202s] Searching alignments... [39.626s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.132s] Building query seed array... [2.084s] Computing hash join... [6.322s] Masking low complexity seeds... [0.215s] Searching alignments... [34.102s] Deallocating memory... [0s] Deallocating buffers... [1.801s] Clearing query masking... [1.735s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [6.71s] Sorting trace points... [1.331s] Computing alignments... [32.938s] Deallocating buffers... [0.015s] Loading trace points... [0.077s] Sorting trace points... [1.243s] Computing alignments... [32.832s] Deallocating buffers... [0.017s] Loading trace points... [0.089s] Sorting trace points... [1.289s] Computing alignments... [33.121s] Deallocating buffers... [0.015s] Loading trace points... [0.066s] Sorting trace points... [1.278s] Computing alignments... [32.757s] Deallocating buffers... [0.014s] Loading trace points... [0.06s] Sorting trace points... [1.302s] Computing alignments... [32.536s] Deallocating buffers... [0.13s] Loading trace points... [0.041s] Sorting trace points... [1.261s] Computing alignments... [32.738s] Deallocating buffers... [0.014s] Loading trace points... [0.078s] Sorting trace points... [1.192s] Computing alignments... [33.147s] Deallocating buffers... [0.014s] Loading trace points... [0.098s] Sorting trace points... [1.061s] Computing alignments... [32.901s] Deallocating buffers... [0.016s] Loading trace points... [0.039s] Sorting trace points... [1.279s] Computing alignments... [33.591s] Deallocating buffers... [0.015s] Loading trace points... [0.056s] Sorting trace points... [1.344s] Computing alignments... [34.409s] Deallocating buffers... [0.014s] Loading trace points... [0.075s] Sorting trace points... [1.346s] Computing alignments... [34.675s] Deallocating buffers... [0.018s] Loading trace points... [0.05s] Sorting trace points... [1.323s] Computing alignments... [34.722s] Deallocating buffers... [0.018s] Loading trace points... [0.062s] Sorting trace points... [1.306s] Computing alignments... [34.592s] Deallocating buffers... [0.018s] Loading trace points... [0.061s] Sorting trace points... [1.404s] Computing alignments... [34.47s] Deallocating buffers... [0.015s] Loading trace points... [0.05s] Sorting trace points... [1.383s] Computing alignments... [34.972s] Deallocating buffers... [0.114s] Loading trace points... [0s] Sorting trace points... [1.105s] Computing alignments... [34.34s] Deallocating buffers... [0.017s] Loading trace points... [0s] [567.532s] Deallocating reference... [0.059s] Loading reference sequences... [29.596s] Masking reference... [30.903s] Initializing dictionary... [0.077s] Initializing temporary storage... [0.008s] Building reference histograms... [32.744s] Allocating buffers... [0.001s] Processing query block 1, reference block 4/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.219s] Building query seed array... [2.236s] Computing hash join... [6.858s] Masking low complexity seeds... [0.22s] Searching alignments... [88.353s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 1/2, index chunk 2/4. Building reference seed array... [13.172s] Building query seed array... [2.904s] Computing hash join... [6.605s] Masking low complexity seeds... [0.219s] Searching alignments... [58.241s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.954s] Building query seed array... [2.883s] Computing hash join... [6.529s] Masking low complexity seeds... [0.241s] Searching alignments... [49.092s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.35s] Building query seed array... [2.393s] Computing hash join... [7.266s] Masking low complexity seeds... [0.338s] Searching alignments... [43.859s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.558s] Building query seed array... [2.2s] Computing hash join... [6.421s] Masking low complexity seeds... [0.229s] Searching alignments... [45.53s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 2/2, index chunk 2/4. Building reference seed array... [13.003s] Building query seed array... [2.592s] Computing hash join... [6.718s] Masking low complexity seeds... [0.222s] Searching alignments... [35.026s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.392s] Building query seed array... [2.589s] Computing hash join... [6.762s] Masking low complexity seeds... [0.233s] Searching alignments... [40.002s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.177s] Building query seed array... [2.114s] Computing hash join... [6.723s] Masking low complexity seeds... [0.211s] Searching alignments... [34.39s] Deallocating memory... [0s] Deallocating buffers... [1.718s] Clearing query masking... [1.745s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [6.738s] Sorting trace points... [1.368s] Computing alignments... [33.027s] Deallocating buffers... [0.015s] Loading trace points... [0.068s] Sorting trace points... [1.204s] Computing alignments... [32.693s] Deallocating buffers... [0.017s] Loading trace points... [0.097s] Sorting trace points... [1.278s] Computing alignments... [33.103s] Deallocating buffers... [0.014s] Loading trace points... [0.058s] Sorting trace points... [1.268s] Computing alignments... [32.894s] Deallocating buffers... [0.014s] Loading trace points... [0.956s] Sorting trace points... [1.058s] Computing alignments... [32.57s] Deallocating buffers... [0.015s] Loading trace points... [0.108s] Sorting trace points... [1.228s] Computing alignments... [32.785s] Deallocating buffers... [0.018s] Loading trace points... [0.105s] Sorting trace points... [1.391s] Computing alignments... [33.171s] Deallocating buffers... [0.205s] Loading trace points... [0.087s] Sorting trace points... [1.258s] Computing alignments... [32.79s] Deallocating buffers... [0.017s] Loading trace points... [0.04s] Sorting trace points... [0.946s] Computing alignments... [33.452s] Deallocating buffers... [0.016s] Loading trace points... [0.07s] Sorting trace points... [1.054s] Computing alignments... [34.435s] Deallocating buffers... [0.016s] Loading trace points... [0.052s] Sorting trace points... [1.034s] Computing alignments... [34.699s] Deallocating buffers... [0.016s] Loading trace points... [0.1s] Sorting trace points... [1.331s] Computing alignments... [34.716s] Deallocating buffers... [0.016s] Loading trace points... [0.048s] Sorting trace points... [1.281s] Computing alignments... [34.646s] Deallocating buffers... [0.015s] Loading trace points... [0.356s] Sorting trace points... [1.169s] Computing alignments... [34.5s] Deallocating buffers... [0.016s] Loading trace points... [0.081s] Sorting trace points... [1.168s] Computing alignments... [34.732s] Deallocating buffers... [0.016s] Loading trace points... [0s] Sorting trace points... [1.315s] Computing alignments... [34.225s] Deallocating buffers... [0.015s] Loading trace points... [0s] [567.458s] Deallocating reference... [0.062s] Loading reference sequences... [29.178s] Masking reference... [30.905s] Initializing dictionary... [0.077s] Initializing temporary storage... [0.008s] Building reference histograms... [32.976s] Allocating buffers... [0.001s] Processing query block 1, reference block 5/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.707s] Building query seed array... [2.282s] Computing hash join... [7.078s] Masking low complexity seeds... [0.578s] Searching alignments... [89.6s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 1/2, index chunk 2/4. Building reference seed array... [13.171s] Building query seed array... [3.055s] Computing hash join... [6.618s] Masking low complexity seeds... [0.248s] Searching alignments... [59.589s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.533s] Building query seed array... [3.018s] Computing hash join... [6.836s] Masking low complexity seeds... [0.336s] Searching alignments... [48.055s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.797s] Building query seed array... [2.467s] Computing hash join... [6.389s] Masking low complexity seeds... [0.24s] Searching alignments... [42.243s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.616s] Building query seed array... [2.227s] Computing hash join... [6.332s] Masking low complexity seeds... [0.237s] Searching alignments... [44.513s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.901s] Building query seed array... [2.521s] Computing hash join... [7.137s] Masking low complexity seeds... [0.317s] Searching alignments... [33.473s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.581s] Building query seed array... [2.561s] Computing hash join... [7.129s] Masking low complexity seeds... [0.274s] Searching alignments... [38.824s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.418s] Building query seed array... [2.215s] Computing hash join... [6.49s] Masking low complexity seeds... [0.218s] Searching alignments... [33.232s] Deallocating memory... [0s] Deallocating buffers... [1.813s] Clearing query masking... [1.706s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [6.819s] Sorting trace points... [1.357s] Computing alignments... [32.893s] Deallocating buffers... [0.015s] Loading trace points... [0.067s] Sorting trace points... [1.253s] Computing alignments... [32.707s] Deallocating buffers... [0.018s] Loading trace points... [0.078s] Sorting trace points... [1.282s] Computing alignments... [33.013s] Deallocating buffers... [0.014s] Loading trace points... [0.053s] Sorting trace points... [1.247s] Computing alignments... [32.719s] Deallocating buffers... [0.017s] Loading trace points... [0.061s] Sorting trace points... [1.273s] Computing alignments... [32.417s] Deallocating buffers... [0.093s] Loading trace points... [0.474s] Sorting trace points... [1.042s] Computing alignments... [32.61s] Deallocating buffers... [0.015s] Loading trace points... [0.095s] Sorting trace points... [1.047s] Computing alignments... [33.085s] Deallocating buffers... [0.017s] Loading trace points... [0.097s] Sorting trace points... [1.193s] Computing alignments... [32.675s] Deallocating buffers... [0.017s] Loading trace points... [0s] Sorting trace points... [0.958s] Computing alignments... [33.363s] Deallocating buffers... [0.016s] Loading trace points... [0.062s] Sorting trace points... [1.324s] Computing alignments... [34.409s] Deallocating buffers... [0.018s] Loading trace points... [0.051s] Sorting trace points... [1.353s] Computing alignments... [34.677s] Deallocating buffers... [0.015s] Loading trace points... [0.058s] Sorting trace points... [1.372s] Computing alignments... [34.53s] Deallocating buffers... [0.018s] Loading trace points... [0.042s] Sorting trace points... [1.446s] Computing alignments... [34.577s] Deallocating buffers... [0.146s] Loading trace points... [0.117s] Sorting trace points... [1.369s] Computing alignments... [34.5s] Deallocating buffers... [0.015s] Loading trace points... [0.041s] Sorting trace points... [1.06s] Computing alignments... [34.769s] Deallocating buffers... [0.016s] Loading trace points... [0s] Sorting trace points... [1.321s] Computing alignments... [34.221s] Deallocating buffers... [0.015s] Loading trace points... [0s] [566.343s] Deallocating reference... [0.059s] Loading reference sequences... [30.234s] Masking reference... [32.094s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.008s] Building reference histograms... [32.685s] Allocating buffers... [0s] Processing query block 1, reference block 6/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.501s] Building query seed array... [2.144s] Computing hash join... [7.022s] Masking low complexity seeds... [0.589s] Searching alignments... [87.565s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.909s] Building query seed array... [3.144s] Computing hash join... [6.627s] Masking low complexity seeds... [0.241s] Searching alignments... [55.781s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.782s] Building query seed array... [2.967s] Computing hash join... [6.971s] Masking low complexity seeds... [0.233s] Searching alignments... [48.759s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.361s] Building query seed array... [2.377s] Computing hash join... [6.595s] Masking low complexity seeds... [0.221s] Searching alignments... [42.966s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.587s] Building query seed array... [2.297s] Computing hash join... [6.328s] Masking low complexity seeds... [0.226s] Searching alignments... [42.863s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.866s] Building query seed array... [2.513s] Computing hash join... [6.673s] Masking low complexity seeds... [0.289s] Searching alignments... [33.227s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.549s] Building query seed array... [2.623s] Computing hash join... [6.938s] Masking low complexity seeds... [0.301s] Searching alignments... [38.554s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.354s] Building query seed array... [2.308s] Computing hash join... [6.867s] Masking low complexity seeds... [0.299s] Searching alignments... [33.035s] Deallocating memory... [0s] Deallocating buffers... [1.982s] Clearing query masking... [1.73s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [6.597s] Sorting trace points... [1.314s] Computing alignments... [32.687s] Deallocating buffers... [0.017s] Loading trace points... [0.33s] Sorting trace points... [1.281s] Computing alignments... [32.579s] Deallocating buffers... [0.017s] Loading trace points... [0.062s] Sorting trace points... [1.255s] Computing alignments... [32.977s] Deallocating buffers... [0.018s] Loading trace points... [0.059s] Sorting trace points... [0.949s] Computing alignments... [32.595s] Deallocating buffers... [0.016s] Loading trace points... [0.077s] Sorting trace points... [1.146s] Computing alignments... [32.41s] Deallocating buffers... [0.017s] Loading trace points... [0.084s] Sorting trace points... [1.462s] Computing alignments... [32.661s] Deallocating buffers... [0.19s] Loading trace points... [0.073s] Sorting trace points... [0.961s] Computing alignments... [32.909s] Deallocating buffers... [0.016s] Loading trace points... [0.079s] Sorting trace points... [1.12s] Computing alignments... [32.592s] Deallocating buffers... [0.016s] Loading trace points... [1.202s] Sorting trace points... [1.36s] Computing alignments... [33.145s] Deallocating buffers... [0.014s] Loading trace points... [0.046s] Sorting trace points... [1.305s] Computing alignments... [34.236s] Deallocating buffers... [0.018s] Loading trace points... [0.048s] Sorting trace points... [1.334s] Computing alignments... [34.61s] Deallocating buffers... [0.018s] Loading trace points... [0.086s] Sorting trace points... [1.436s] Computing alignments... [34.749s] Deallocating buffers... [0.259s] Loading trace points... [0.096s] Sorting trace points... [1.242s] Computing alignments... [34.283s] Deallocating buffers... [0.015s] Loading trace points... [1.083s] Sorting trace points... [1.378s] Computing alignments... [34.278s] Deallocating buffers... [0.015s] Loading trace points... [0.075s] Sorting trace points... [1.113s] Computing alignments... [34.568s] Deallocating buffers... [0.017s] Loading trace points... [0s] Sorting trace points... [1.32s] Computing alignments... [34.091s] Deallocating buffers... [0.015s] Loading trace points... [0s] [566.235s] Deallocating reference... [0.056s] Loading reference sequences... [33.687s] Masking reference... [32.084s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.008s] Building reference histograms... [32.261s] Allocating buffers... [0s] Processing query block 1, reference block 7/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.232s] Building query seed array... [2.2s] Computing hash join... [6.884s] Masking low complexity seeds... [0.219s] Searching alignments... [90.831s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.905s] Building query seed array... [3.164s] Computing hash join... [6.93s] Masking low complexity seeds... [0.23s] Searching alignments... [60.124s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.721s] Building query seed array... [2.917s] Computing hash join... [6.704s] Masking low complexity seeds... [0.213s] Searching alignments... [49.102s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.841s] Building query seed array... [2.588s] Computing hash join... [6.5s] Masking low complexity seeds... [0.241s] Searching alignments... [42.777s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.601s] Building query seed array... [2.212s] Computing hash join... [6.551s] Masking low complexity seeds... [0.226s] Searching alignments... [46.374s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.715s] Building query seed array... [2.443s] Computing hash join... [6.657s] Masking low complexity seeds... [0.215s] Searching alignments... [33.981s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.459s] Building query seed array... [2.569s] Computing hash join... [6.645s] Masking low complexity seeds... [0.282s] Searching alignments... [39.565s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.228s] Building query seed array... [2.214s] Computing hash join... [6.736s] Masking low complexity seeds... [0.207s] Searching alignments... [33.896s] Deallocating memory... [0s] Deallocating buffers... [1.738s] Clearing query masking... [1.722s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [6.729s] Sorting trace points... [1.385s] Computing alignments... [32.991s] Deallocating buffers... [0.014s] Loading trace points... [0.079s] Sorting trace points... [1.262s] Computing alignments... [33.045s] Deallocating buffers... [0.017s] Loading trace points... [0s] Sorting trace points... [1.277s] Computing alignments... [33.205s] Deallocating buffers... [0.014s] Loading trace points... [0.073s] Sorting trace points... [1.233s] Computing alignments... [32.851s] Deallocating buffers... [0.017s] Loading trace points... [0.094s] Sorting trace points... [1.17s] Computing alignments... [32.533s] Deallocating buffers... [0.017s] Loading trace points... [0.058s] Sorting trace points... [1.258s] Computing alignments... [32.738s] Deallocating buffers... [0.014s] Loading trace points... [0s] Sorting trace points... [1.063s] Computing alignments... [33.12s] Deallocating buffers... [0.016s] Loading trace points... [0.098s] Sorting trace points... [1.362s] Computing alignments... [32.914s] Deallocating buffers... [0.081s] Loading trace points... [0.051s] Sorting trace points... [1.346s] Computing alignments... [33.696s] Deallocating buffers... [0.08s] Loading trace points... [0.059s] Sorting trace points... [1.478s] Computing alignments... [34.698s] Deallocating buffers... [0.138s] Loading trace points... [0.065s] Sorting trace points... [1.372s] Computing alignments... [34.953s] Deallocating buffers... [0.015s] Loading trace points... [0.11s] Sorting trace points... [1.37s] Computing alignments... [34.837s] Deallocating buffers... [0.018s] Loading trace points... [0.074s] Sorting trace points... [1.013s] Computing alignments... [34.559s] Deallocating buffers... [0.016s] Loading trace points... [0.074s] Sorting trace points... [1.382s] Computing alignments... [34.631s] Deallocating buffers... [0.018s] Loading trace points... [0.066s] Sorting trace points... [1.292s] Computing alignments... [34.814s] Deallocating buffers... [0.018s] Loading trace points... [0s] Sorting trace points... [1.311s] Computing alignments... [34.487s] Deallocating buffers... [0.015s] Loading trace points... [0s] [568.967s] Deallocating reference... [0.178s] Loading reference sequences... [29.26s] Masking reference... [30.91s] Initializing dictionary... [0.077s] Initializing temporary storage... [0.008s] Building reference histograms... [32.868s] Allocating buffers... [0s] Processing query block 1, reference block 8/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.491s] Building query seed array... [2.249s] Computing hash join... [6.948s] Masking low complexity seeds... [0.228s] Searching alignments... [90.884s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.582s] Building query seed array... [3.092s] Computing hash join... [6.813s] Masking low complexity seeds... [0.247s] Searching alignments... [57.691s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.829s] Building query seed array... [2.706s] Computing hash join... [7.251s] Masking low complexity seeds... [0.227s] Searching alignments... [50.144s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.568s] Building query seed array... [2.418s] Computing hash join... [6.454s] Masking low complexity seeds... [0.264s] Searching alignments... [43.638s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.704s] Building query seed array... [2.202s] Computing hash join... [6.811s] Masking low complexity seeds... [0.223s] Searching alignments... [43.848s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 2/2, index chunk 2/4. Building reference seed array... [13.055s] Building query seed array... [2.502s] Computing hash join... [6.799s] Masking low complexity seeds... [0.22s] Searching alignments... [34.588s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 2/2, index chunk 3/4. Building reference seed array... [14.014s] Building query seed array... [2.541s] Computing hash join... [7.081s] Masking low complexity seeds... [0.226s] Searching alignments... [39.978s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.174s] Building query seed array... [2.147s] Computing hash join... [6.723s] Masking low complexity seeds... [0.21s] Searching alignments... [33.953s] Deallocating memory... [0s] Deallocating buffers... [1.976s] Clearing query masking... [1.715s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [6.745s] Sorting trace points... [1.421s] Computing alignments... [33.073s] Deallocating buffers... [0.014s] Loading trace points... [0.086s] Sorting trace points... [1.413s] Computing alignments... [33.204s] Deallocating buffers... [0.288s] Loading trace points... [0s] Sorting trace points... [1.324s] Computing alignments... [33.06s] Deallocating buffers... [0.014s] Loading trace points... [0.063s] Sorting trace points... [1.378s] Computing alignments... [32.749s] Deallocating buffers... [0.172s] Loading trace points... [0.056s] Sorting trace points... [1.094s] Computing alignments... [32.51s] Deallocating buffers... [0.016s] Loading trace points... [0.054s] Sorting trace points... [1.101s] Computing alignments... [32.632s] Deallocating buffers... [0.015s] Loading trace points... [0s] Sorting trace points... [1.154s] Computing alignments... [33.069s] Deallocating buffers... [0.014s] Loading trace points... [0.072s] Sorting trace points... [1.242s] Computing alignments... [32.855s] Deallocating buffers... [0.042s] Loading trace points... [0.098s] Sorting trace points... [1.299s] Computing alignments... [33.336s] Deallocating buffers... [0.014s] Loading trace points... [0.055s] Sorting trace points... [1.094s] Computing alignments... [34.422s] Deallocating buffers... [0.016s] Loading trace points... [0.064s] Sorting trace points... [0.995s] Computing alignments... [34.684s] Deallocating buffers... [0.016s] Loading trace points... [0.087s] Sorting trace points... [1.346s] Computing alignments... [34.57s] Deallocating buffers... [0.015s] Loading trace points... [0.104s] Sorting trace points... [1.317s] Computing alignments... [34.535s] Deallocating buffers... [0.018s] Loading trace points... [0.072s] Sorting trace points... [1.167s] Computing alignments... [34.502s] Deallocating buffers... [0.015s] Loading trace points... [0.044s] Sorting trace points... [1.459s] Computing alignments... [34.799s] Deallocating buffers... [0.166s] Loading trace points... [0s] Sorting trace points... [1.278s] Computing alignments... [34.193s] Deallocating buffers... [0.015s] Loading trace points... [0s] [566.86s] Deallocating reference... [0.056s] Loading reference sequences... [29.969s] Masking reference... [31.423s] Initializing dictionary... [0.077s] Initializing temporary storage... [0.007s] Building reference histograms... [32.498s] Allocating buffers... [0.001s] Processing query block 1, reference block 9/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.041s] Building query seed array... [2.267s] Computing hash join... [7.367s] Masking low complexity seeds... [0.224s] Searching alignments... [89.61s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.772s] Building query seed array... [3.218s] Computing hash join... [6.998s] Masking low complexity seeds... [0.249s] Searching alignments... [58.866s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.614s] Building query seed array... [2.946s] Computing hash join... [6.971s] Masking low complexity seeds... [0.225s] Searching alignments... [48.298s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.751s] Building query seed array... [2.439s] Computing hash join... [6.461s] Masking low complexity seeds... [0.248s] Searching alignments... [42.665s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.422s] Building query seed array... [2.301s] Computing hash join... [6.641s] Masking low complexity seeds... [0.245s] Searching alignments... [45.005s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.859s] Building query seed array... [2.481s] Computing hash join... [6.735s] Masking low complexity seeds... [0.207s] Searching alignments... [33.837s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.409s] Building query seed array... [2.657s] Computing hash join... [6.675s] Masking low complexity seeds... [0.208s] Searching alignments... [38.28s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.262s] Building query seed array... [2.196s] Computing hash join... [6.9s] Masking low complexity seeds... [0.204s] Searching alignments... [33.688s] Deallocating memory... [0s] Deallocating buffers... [2.05s] Clearing query masking... [1.726s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [6.79s] Sorting trace points... [1.428s] Computing alignments... [32.998s] Deallocating buffers... [0.015s] Loading trace points... [0.098s] Sorting trace points... [1.31s] Computing alignments... [32.691s] Deallocating buffers... [0.018s] Loading trace points... [0.077s] Sorting trace points... [0.931s] Computing alignments... [33.064s] Deallocating buffers... [0.016s] Loading trace points... [0.054s] Sorting trace points... [0.965s] Computing alignments... [32.791s] Deallocating buffers... [0.016s] Loading trace points... [0.058s] Sorting trace points... [1.221s] Computing alignments... [32.479s] Deallocating buffers... [0.014s] Loading trace points... [0.041s] Sorting trace points... [1.256s] Computing alignments... [32.642s] Deallocating buffers... [0.017s] Loading trace points... [0.088s] Sorting trace points... [1.098s] Computing alignments... [33.128s] Deallocating buffers... [0.015s] Loading trace points... [0.115s] Sorting trace points... [1.272s] Computing alignments... [32.761s] Deallocating buffers... [0.014s] Loading trace points... [0.075s] Sorting trace points... [1.269s] Computing alignments... [33.359s] Deallocating buffers... [0.014s] Loading trace points... [0.048s] Sorting trace points... [1.343s] Computing alignments... [34.4s] Deallocating buffers... [0.018s] Loading trace points... [0.061s] Sorting trace points... [1.332s] Computing alignments... [34.693s] Deallocating buffers... [0.015s] Loading trace points... [0.054s] Sorting trace points... [1.512s] Computing alignments... [34.768s] Deallocating buffers... [0.251s] Loading trace points... [0.051s] Sorting trace points... [1.306s] Computing alignments... [34.356s] Deallocating buffers... [0.018s] Loading trace points... [0.081s] Sorting trace points... [1.282s] Computing alignments... [34.423s] Deallocating buffers... [0.015s] Loading trace points... [0.042s] Sorting trace points... [1.371s] Computing alignments... [34.6s] Deallocating buffers... [0.015s] Loading trace points... [0s] Sorting trace points... [1.042s] Computing alignments... [34.118s] Deallocating buffers... [0.017s] Loading trace points... [0s] [565.714s] Deallocating reference... [0.059s] Loading reference sequences... [30.658s] Masking reference... [32.029s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.008s] Building reference histograms... [32.016s] Allocating buffers... [0s] Processing query block 1, reference block 10/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.873s] Building query seed array... [2.296s] Computing hash join... [7.029s] Masking low complexity seeds... [0.222s] Searching alignments... [90.057s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.944s] Building query seed array... [3.263s] Computing hash join... [6.785s] Masking low complexity seeds... [0.253s] Searching alignments... [59.412s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.51s] Building query seed array... [2.704s] Computing hash join... [7.079s] Masking low complexity seeds... [0.266s] Searching alignments... [49.633s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 1/2, index chunk 4/4. Building reference seed array... [11.007s] Building query seed array... [2.538s] Computing hash join... [6.844s] Masking low complexity seeds... [0.24s] Searching alignments... [43.382s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.729s] Building query seed array... [2.235s] Computing hash join... [6.957s] Masking low complexity seeds... [0.213s] Searching alignments... [46.093s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 2/2, index chunk 2/4. Building reference seed array... [13.091s] Building query seed array... [2.526s] Computing hash join... [6.294s] Masking low complexity seeds... [0.235s] Searching alignments... [35.598s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.584s] Building query seed array... [2.639s] Computing hash join... [6.331s] Masking low complexity seeds... [0.231s] Searching alignments... [39.771s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.545s] Building query seed array... [2.252s] Computing hash join... [6.419s] Masking low complexity seeds... [0.236s] Searching alignments... [34.094s] Deallocating memory... [0s] Deallocating buffers... [2.096s] Clearing query masking... [1.726s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [6.717s] Sorting trace points... [1.416s] Computing alignments... [32.957s] Deallocating buffers... [0.014s] Loading trace points... [0.064s] Sorting trace points... [1.234s] Computing alignments... [32.767s] Deallocating buffers... [0.014s] Loading trace points... [0.104s] Sorting trace points... [1.194s] Computing alignments... [33.073s] Deallocating buffers... [0.014s] Loading trace points... [0.062s] Sorting trace points... [1.237s] Computing alignments... [32.851s] Deallocating buffers... [0.014s] Loading trace points... [0.086s] Sorting trace points... [1.396s] Computing alignments... [32.559s] Deallocating buffers... [0.213s] Loading trace points... [0.088s] Sorting trace points... [1.293s] Computing alignments... [32.712s] Deallocating buffers... [0.014s] Loading trace points... [0.137s] Sorting trace points... [1.121s] Computing alignments... [33.092s] Deallocating buffers... [0.014s] Loading trace points... [0.077s] Sorting trace points... [1.278s] Computing alignments... [32.934s] Deallocating buffers... [0.017s] Loading trace points... [0.001s] Sorting trace points... [1.438s] Computing alignments... [33.459s] Deallocating buffers... [0.203s] Loading trace points... [0.091s] Sorting trace points... [1.337s] Computing alignments... [34.54s] Deallocating buffers... [0.023s] Loading trace points... [0.588s] Sorting trace points... [1.333s] Computing alignments... [34.802s] Deallocating buffers... [0.015s] Loading trace points... [0.932s] Sorting trace points... [1.165s] Computing alignments... [34.795s] Deallocating buffers... [0.016s] Loading trace points... [0.05s] Sorting trace points... [1.372s] Computing alignments... [34.69s] Deallocating buffers... [0.018s] Loading trace points... [0.069s] Sorting trace points... [1.109s] Computing alignments... [34.732s] Deallocating buffers... [0.017s] Loading trace points... [0.05s] Sorting trace points... [1.405s] Computing alignments... [34.838s] Deallocating buffers... [0.13s] Loading trace points... [0s] Sorting trace points... [1.305s] Computing alignments... [34.267s] Deallocating buffers... [0.018s] Loading trace points... [0s] [569.839s] Deallocating reference... [0.056s] Loading reference sequences... [36.399s] Masking reference... [30.951s] Initializing dictionary... [0.077s] Initializing temporary storage... [0.008s] Building reference histograms... [32.842s] Allocating buffers... [0s] Processing query block 1, reference block 11/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.402s] Building query seed array... [2.158s] Computing hash join... [6.836s] Masking low complexity seeds... [0.254s] Searching alignments... [86.996s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 1/2, index chunk 2/4. Building reference seed array... [13.373s] Building query seed array... [3.247s] Computing hash join... [6.381s] Masking low complexity seeds... [0.229s] Searching alignments... [58.577s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.585s] Building query seed array... [2.964s] Computing hash join... [7.005s] Masking low complexity seeds... [0.228s] Searching alignments... [47.736s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.401s] Building query seed array... [2.5s] Computing hash join... [7.185s] Masking low complexity seeds... [0.223s] Searching alignments... [42.133s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.794s] Building query seed array... [2.237s] Computing hash join... [6.285s] Masking low complexity seeds... [0.216s] Searching alignments... [42.894s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.981s] Building query seed array... [2.575s] Computing hash join... [6.502s] Masking low complexity seeds... [0.231s] Searching alignments... [33.507s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.691s] Building query seed array... [2.547s] Computing hash join... [6.374s] Masking low complexity seeds... [0.263s] Searching alignments... [38.206s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.391s] Building query seed array... [2.246s] Computing hash join... [6.417s] Masking low complexity seeds... [0.229s] Searching alignments... [32.899s] Deallocating memory... [0s] Deallocating buffers... [2.217s] Clearing query masking... [1.724s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [6.834s] Sorting trace points... [1.371s] Computing alignments... [33.139s] Deallocating buffers... [0.015s] Loading trace points... [0.078s] Sorting trace points... [1.115s] Computing alignments... [32.762s] Deallocating buffers... [0.045s] Loading trace points... [0.092s] Sorting trace points... [1.011s] Computing alignments... [33.104s] Deallocating buffers... [0.015s] Loading trace points... [0.049s] Sorting trace points... [1.305s] Computing alignments... [32.833s] Deallocating buffers... [0.014s] Loading trace points... [0.094s] Sorting trace points... [0.929s] Computing alignments... [32.495s] Deallocating buffers... [0.015s] Loading trace points... [0.088s] Sorting trace points... [1.262s] Computing alignments... [32.662s] Deallocating buffers... [0.014s] Loading trace points... [0.075s] Sorting trace points... [0.997s] Computing alignments... [33.138s] Deallocating buffers... [0.015s] Loading trace points... [0.077s] Sorting trace points... [1.253s] Computing alignments... [32.767s] Deallocating buffers... [0.014s] Loading trace points... [0.101s] Sorting trace points... [1.335s] Computing alignments... [33.507s] Deallocating buffers... [0.083s] Loading trace points... [0.059s] Sorting trace points... [0.934s] Computing alignments... [34.379s] Deallocating buffers... [0.016s] Loading trace points... [0.05s] Sorting trace points... [1.272s] Computing alignments... [34.62s] Deallocating buffers... [0.015s] Loading trace points... [0.083s] Sorting trace points... [1.515s] Computing alignments... [34.64s] Deallocating buffers... [0.21s] Loading trace points... [0.003s] Sorting trace points... [1.361s] Computing alignments... [34.662s] Deallocating buffers... [0.014s] Loading trace points... [0.087s] Sorting trace points... [1.348s] Computing alignments... [34.817s] Deallocating buffers... [0.02s] Loading trace points... [0.001s] Sorting trace points... [1.374s] Computing alignments... [34.697s] Deallocating buffers... [0.018s] Loading trace points... [0s] Sorting trace points... [1.45s] Computing alignments... [34.356s] Deallocating buffers... [0.284s] Loading trace points... [0s] [567.319s] Deallocating reference... [0.181s] Loading reference sequences... [31.432s] Masking reference... [31.13s] Initializing dictionary... [0.077s] Initializing temporary storage... [0.007s] Building reference histograms... [32.063s] Allocating buffers... [0s] Processing query block 1, reference block 12/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.038s] Building query seed array... [2.162s] Computing hash join... [7.197s] Masking low complexity seeds... [0.244s] Searching alignments... [90.628s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.893s] Building query seed array... [3.326s] Computing hash join... [7.126s] Masking low complexity seeds... [0.233s] Searching alignments... [57.88s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.934s] Building query seed array... [2.89s] Computing hash join... [6.88s] Masking low complexity seeds... [0.314s] Searching alignments... [50.528s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.61s] Building query seed array... [2.384s] Computing hash join... [6.792s] Masking low complexity seeds... [0.273s] Searching alignments... [44.729s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.286s] Building query seed array... [2.173s] Computing hash join... [7.041s] Masking low complexity seeds... [0.21s] Searching alignments... [44.177s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.534s] Building query seed array... [2.511s] Computing hash join... [6.366s] Masking low complexity seeds... [0.216s] Searching alignments... [33.318s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 2/2, index chunk 3/4. Building reference seed array... [14.459s] Building query seed array... [2.641s] Computing hash join... [6.382s] Masking low complexity seeds... [0.218s] Searching alignments... [39.361s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.526s] Building query seed array... [2.208s] Computing hash join... [6.527s] Masking low complexity seeds... [0.247s] Searching alignments... [33.724s] Deallocating memory... [0s] Deallocating buffers... [2.251s] Clearing query masking... [1.724s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [7.041s] Sorting trace points... [1.36s] Computing alignments... [33.136s] Deallocating buffers... [0.014s] Loading trace points... [0.063s] Sorting trace points... [1.133s] Computing alignments... [32.966s] Deallocating buffers... [0.015s] Loading trace points... [0.126s] Sorting trace points... [1.326s] Computing alignments... [33.324s] Deallocating buffers... [0.014s] Loading trace points... [0.074s] Sorting trace points... [0.92s] Computing alignments... [33.001s] Deallocating buffers... [0.016s] Loading trace points... [0.071s] Sorting trace points... [1.26s] Computing alignments... [32.657s] Deallocating buffers... [0.041s] Loading trace points... [0.051s] Sorting trace points... [1.43s] Computing alignments... [32.919s] Deallocating buffers... [0.176s] Loading trace points... [0.131s] Sorting trace points... [1.153s] Computing alignments... [33.23s] Deallocating buffers... [0.015s] Loading trace points... [0.107s] Sorting trace points... [1.41s] Computing alignments... [33.129s] Deallocating buffers... [0.196s] Loading trace points... [0.053s] Sorting trace points... [1.275s] Computing alignments... [33.609s] Deallocating buffers... [0.014s] Loading trace points... [0.057s] Sorting trace points... [1.307s] Computing alignments... [34.633s] Deallocating buffers... [0.015s] Loading trace points... [0.058s] Sorting trace points... [1.364s] Computing alignments... [34.942s] Deallocating buffers... [0.015s] Loading trace points... [0.058s] Sorting trace points... [1.516s] Computing alignments... [34.893s] Deallocating buffers... [0.316s] Loading trace points... [0.097s] Sorting trace points... [1.39s] Computing alignments... [34.794s] Deallocating buffers... [0.018s] Loading trace points... [0.116s] Sorting trace points... [1.325s] Computing alignments... [34.784s] Deallocating buffers... [0.018s] Loading trace points... [0.064s] Sorting trace points... [1.381s] Computing alignments... [34.973s] Deallocating buffers... [0.015s] Loading trace points... [0s] Sorting trace points... [1.394s] Computing alignments... [34.926s] Deallocating buffers... [0.265s] Loading trace points... [0s] [572.479s] Deallocating reference... [0.064s] Loading reference sequences... [29.267s] Masking reference... [30.965s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.007s] Building reference histograms... [32.699s] Allocating buffers... [0s] Processing query block 1, reference block 13/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.195s] Building query seed array... [2.196s] Computing hash join... [7.147s] Masking low complexity seeds... [0.219s] Searching alignments... [90.579s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 1/2, index chunk 2/4. Building reference seed array... [13.241s] Building query seed array... [3.215s] Computing hash join... [7.236s] Masking low complexity seeds... [0.215s] Searching alignments... [61.923s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.9s] Building query seed array... [3.074s] Computing hash join... [7.153s] Masking low complexity seeds... [0.225s] Searching alignments... [48.897s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 1/2, index chunk 4/4. Building reference seed array... [11.316s] Building query seed array... [2.435s] Computing hash join... [6.534s] Masking low complexity seeds... [0.257s] Searching alignments... [42.471s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.677s] Building query seed array... [2.247s] Computing hash join... [6.883s] Masking low complexity seeds... [0.231s] Searching alignments... [44.423s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 2/2, index chunk 2/4. Building reference seed array... [13.277s] Building query seed array... [2.54s] Computing hash join... [6.924s] Masking low complexity seeds... [0.26s] Searching alignments... [33.762s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 2/2, index chunk 3/4. Building reference seed array... [14.102s] Building query seed array... [2.484s] Computing hash join... [7.15s] Masking low complexity seeds... [0.257s] Searching alignments... [40.04s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.727s] Building query seed array... [2.256s] Computing hash join... [6.425s] Masking low complexity seeds... [0.202s] Searching alignments... [34.226s] Deallocating memory... [0s] Deallocating buffers... [2.265s] Clearing query masking... [1.734s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [6.699s] Sorting trace points... [1.337s] Computing alignments... [33.145s] Deallocating buffers... [0.016s] Loading trace points... [0.059s] Sorting trace points... [1.107s] Computing alignments... [32.858s] Deallocating buffers... [0.19s] Loading trace points... [0.1s] Sorting trace points... [1.32s] Computing alignments... [33.165s] Deallocating buffers... [0.014s] Loading trace points... [0.29s] Sorting trace points... [1.189s] Computing alignments... [32.769s] Deallocating buffers... [0.017s] Loading trace points... [0.077s] Sorting trace points... [1.231s] Computing alignments... [32.463s] Deallocating buffers... [0.014s] Loading trace points... [0.044s] Sorting trace points... [1.27s] Computing alignments... [32.68s] Deallocating buffers... [0.018s] Loading trace points... [0.082s] Sorting trace points... [1.19s] Computing alignments... [33.144s] Deallocating buffers... [0.014s] Loading trace points... [0.086s] Sorting trace points... [1.038s] Computing alignments... [32.861s] Deallocating buffers... [0.017s] Loading trace points... [0s] Sorting trace points... [1.271s] Computing alignments... [33.42s] Deallocating buffers... [0.018s] Loading trace points... [0.056s] Sorting trace points... [1.328s] Computing alignments... [34.436s] Deallocating buffers... [0.015s] Loading trace points... [0.051s] Sorting trace points... [1.226s] Computing alignments... [34.755s] Deallocating buffers... [0.178s] Loading trace points... [0.383s] Sorting trace points... [1.407s] Computing alignments... [34.731s] Deallocating buffers... [0.048s] Loading trace points... [0.046s] Sorting trace points... [1.238s] Computing alignments... [34.672s] Deallocating buffers... [0.015s] Loading trace points... [0.085s] Sorting trace points... [1.002s] Computing alignments... [34.513s] Deallocating buffers... [0.016s] Loading trace points... [0.043s] Sorting trace points... [1.453s] Computing alignments... [34.805s] Deallocating buffers... [0.119s] Loading trace points... [0s] Sorting trace points... [0.962s] Computing alignments... [34.181s] Deallocating buffers... [0.04s] Loading trace points... [0s] [567.32s] Deallocating reference... [0.067s] Loading reference sequences... [23.719s] Masking reference... [25.032s] Initializing dictionary... [0.063s] Initializing temporary storage... [0.008s] Building reference histograms... [26.513s] Allocating buffers... [0s] Processing query block 1, reference block 14/14, shape 1/2, index chunk 1/4. Building reference seed array... [8.737s] Building query seed array... [2.269s] Computing hash join... [5.173s] Masking low complexity seeds... [0.22s] Searching alignments... [70.423s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 1/2, index chunk 2/4. Building reference seed array... [10.114s] Building query seed array... [3.166s] Computing hash join... [5.306s] Masking low complexity seeds... [0.21s] Searching alignments... [47.288s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 1/2, index chunk 3/4. Building reference seed array... [10.973s] Building query seed array... [2.958s] Computing hash join... [5.368s] Masking low complexity seeds... [0.212s] Searching alignments... [39.67s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 1/2, index chunk 4/4. Building reference seed array... [8.288s] Building query seed array... [2.42s] Computing hash join... [5.8s] Masking low complexity seeds... [0.259s] Searching alignments... [36.518s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 2/2, index chunk 1/4. Building reference seed array... [8.013s] Building query seed array... [2.158s] Computing hash join... [5.064s] Masking low complexity seeds... [0.204s] Searching alignments... [35.428s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 2/2, index chunk 2/4. Building reference seed array... [10.066s] Building query seed array... [2.399s] Computing hash join... [4.986s] Masking low complexity seeds... [0.201s] Searching alignments... [28.272s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 2/2, index chunk 3/4. Building reference seed array... [10.825s] Building query seed array... [2.665s] Computing hash join... [5.297s] Masking low complexity seeds... [0.206s] Searching alignments... [31.349s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 2/2, index chunk 4/4. Building reference seed array... [8.189s] Building query seed array... [2.164s] Computing hash join... [5.486s] Masking low complexity seeds... [0.241s] Searching alignments... [27.148s] Deallocating memory... [0s] Deallocating buffers... [0.905s] Clearing query masking... [1.717s] Opening temporary output file... [0.002s] Computing alignments... Loading trace points... [12.155s] Sorting trace points... [2.268s] Computing alignments... [52.546s] Deallocating buffers... [0.023s] Loading trace points... [0.142s] Sorting trace points... [2.05s] Computing alignments... [52.977s] Deallocating buffers... [0.314s] Loading trace points... [0.153s] Sorting trace points... [2.043s] Computing alignments... [52.122s] Deallocating buffers... [0.16s] Loading trace points... [0.17s] Sorting trace points... [2.173s] Computing alignments... [52.654s] Deallocating buffers... [0.262s] Loading trace points... [0.215s] Sorting trace points... [2.34s] Computing alignments... [54.05s] Deallocating buffers... [0.177s] Loading trace points... [0.139s] Sorting trace points... [2.085s] Computing alignments... [55.214s] Deallocating buffers... [0.16s] Loading trace points... [0.117s] Sorting trace points... [1.807s] Computing alignments... [55.04s] Deallocating buffers... [0.027s] Loading trace points... [0s] Sorting trace points... [2.205s] Computing alignments... [54.647s] Deallocating buffers... [0.024s] Loading trace points... [0s] [460.795s] Deallocating reference... [0.049s] Loading reference sequences... [0.074s] Deallocating buffers... [0s] Joining output blocks... Joining output blocks... [2283.05s] [2283.05s] Deallocating queries... [0.093s] Loading query sequences... [0s] Closing the input file... [0s] Closing the output file... Loading dictionary... [3.811s] [4.881s] Closing the database... [0s] Cleaning up... [0s] Total time = 19406.8s Reported 2606030077 pairwise alignments, 2606030077 HSPs. 14133824 queries aligned. DIAMOND BLASTx on /gscratch/srlab/sam/data/P_verrucosa/RNAseq/E3_R1.fastp-trim.20230215.fq.gz complete: E3_R1.blastx.meganized.daa Now MEGANizing E3_R1.blastx.meganized.daa Version MEGAN Community Edition (version 6.22.0, built 19 Feb 2022) Author(s) Daniel H. Huson Copyright (C) 2022 Daniel H. Huson. This program comes with ABSOLUTELY NO WARRANTY. Java version: 17.0.2 Functional classifications to use: EC, EGGNOG, GTDB, INTERPRO2GO, SEED Loading ncbi.map: 2,396,736 Loading ncbi.tre: 2,396,740 Loading ec.map: 8,200 Loading ec.tre: 8,204 Loading eggnog.map: 30,875 Loading eggnog.tre: 30,986 Loading gtdb.map: 240,103 Loading gtdb.tre: 240,107 Loading interpro2go.map: 14,242 Loading interpro2go.tre: 28,907 Loading seed.map: 961 Loading seed.tre: 962 Meganizing: E3_R1.blastx.meganized.daa Meganizing init Annotating DAA file using FAST mode (accession database and first accession per line) Annotating references 10% 20% 30% 40% 50% 60% 70% 100% (539.6s) Writing 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (1.2s) Binning reads Initializing... Initializing binning... Using 'Naive LCA' algorithm for binning: Taxonomy Using Best-Hit algorithm for binning: SEED Using Best-Hit algorithm for binning: EGGNOG Using 'Naive LCA' algorithm for binning: GTDB Using Best-Hit algorithm for binning: EC Using Best-Hit algorithm for binning: INTERPRO2GO Binning reads... Binning reads Analyzing alignments 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (5,017.3s) Total reads: 14,133,824 With hits: 14,133,824 Alignments: 2,602,161,783 Assig. Taxonomy: 13,080,542 Assig. SEED: 118,007 Assig. EGGNOG: 58,595 Assig. GTDB: 407,820 Assig. EC: 2,196,450 Assig. INTERPRO2GO: 1,246,738 MinSupport set to: 7066 Binning reads Applying min-support & disabled filter to Taxonomy... 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (0.4s) Min-supp. changes: 3,990 Binning reads Applying min-support & disabled filter to GTDB... 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (11.4s) Min-supp. changes: 2,948 Binning reads Writing classification tables 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (43.8s) Binning reads Syncing 100% (0.3s) Class. Taxonomy: 60 Class. SEED: 499 Class. EGGNOG: 1,807 Class. GTDB: 20 Class. EC: 2,399 Class. INTERPRO2GO: 7,767 Total time: 5,622s Peak memory: 38.3 of 195.3G MEGANization of E3_R1.blastx.meganized.daa completed. Generating MD5 checksum for /gscratch/srlab/sam/data/P_verrucosa/RNAseq/E3_R2.fastp-trim.20230215.fq.gz... 6d13e6ed0d8e8e5005b806c805660ebe /gscratch/srlab/sam/data/P_verrucosa/RNAseq/E3_R2.fastp-trim.20230215.fq.gz Running DIAMOND BLASTx on /gscratch/srlab/sam/data/P_verrucosa/RNAseq/E3_R2.fastp-trim.20230215.fq.gz. diamond v2.1.1.155 (C) Max Planck Society for the Advancement of Science Documentation, support and updates available at http://www.diamondsearch.org Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021) #CPU threads: 40 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: Percentage range of top alignment score to report hits: 5 Opening the database... [0.295s] Database: /gscratch/srlab/blastdbs/20230215-ncbi-nr/20230215-ncbi-nr.dmnd (type: Diamond database, sequences: 526308523, letters: 207134680681) Block size = 15000000000 Opening the input file... [0.607s] Opening the output file... [0s] Loading query sequences... [80.804s] Masking queries... [20.055s] Algorithm: Double-indexed Building query histograms... [21.379s] Loading reference sequences... [32.227s] Masking reference... [30.91s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.008s] Building reference histograms... [32.771s] Allocating buffers... [0s] Processing query block 1, reference block 1/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.055s] Building query seed array... [2.201s] Computing hash join... [6.706s] Masking low complexity seeds... [0.264s] Searching alignments... [89.709s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.647s] Building query seed array... [3.106s] Computing hash join... [6.67s] Masking low complexity seeds... [0.268s] Searching alignments... [57.981s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.629s] Building query seed array... [2.892s] Computing hash join... [6.726s] Masking low complexity seeds... [0.26s] Searching alignments... [52.029s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.426s] Building query seed array... [2.466s] Computing hash join... [6.6s] Masking low complexity seeds... [0.294s] Searching alignments... [44.301s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.705s] Building query seed array... [2.133s] Computing hash join... [6.584s] Masking low complexity seeds... [0.248s] Searching alignments... [49.323s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.659s] Building query seed array... [2.578s] Computing hash join... [6.34s] Masking low complexity seeds... [0.258s] Searching alignments... [34.98s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.715s] Building query seed array... [2.725s] Computing hash join... [6.33s] Masking low complexity seeds... [0.255s] Searching alignments... [44.327s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.361s] Building query seed array... [2.109s] Computing hash join... [6.496s] Masking low complexity seeds... [0.259s] Searching alignments... [36.57s] Deallocating memory... [0s] Deallocating buffers... [1.47s] Clearing query masking... [1.84s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [7.047s] Sorting trace points... [1.162s] Computing alignments... [32.95s] Deallocating buffers... [0.017s] Loading trace points... [0.06s] Sorting trace points... [1.04s] Computing alignments... [32.824s] Deallocating buffers... [0.015s] Loading trace points... [0.047s] Sorting trace points... [1.294s] Computing alignments... [33.307s] Deallocating buffers... [0.014s] Loading trace points... [0.054s] Sorting trace points... [1.256s] Computing alignments... [32.551s] Deallocating buffers... [0.017s] Loading trace points... [0.063s] Sorting trace points... [1.155s] Computing alignments... [32.573s] Deallocating buffers... [0.017s] Loading trace points... [0.041s] Sorting trace points... [0.874s] Computing alignments... [32.61s] Deallocating buffers... [0.015s] Loading trace points... [0.086s] Sorting trace points... [1.274s] Computing alignments... [33.061s] Deallocating buffers... [0.014s] Loading trace points... [0.046s] Sorting trace points... [1.254s] Computing alignments... [32.647s] Deallocating buffers... [0.014s] Loading trace points... [0.055s] Sorting trace points... [0.998s] Computing alignments... [34.076s] Deallocating buffers... [0.015s] Loading trace points... [0.098s] Sorting trace points... [1.026s] Computing alignments... [35.471s] Deallocating buffers... [0.017s] Loading trace points... [0.084s] Sorting trace points... [1.373s] Computing alignments... [35.844s] Deallocating buffers... [0.016s] Loading trace points... [0.343s] Sorting trace points... [1.441s] Computing alignments... [35.64s] Deallocating buffers... [0.019s] Loading trace points... [0.072s] Sorting trace points... [1.32s] Computing alignments... [35.631s] Deallocating buffers... [0.015s] Loading trace points... [0.066s] Sorting trace points... [1.346s] Computing alignments... [35.487s] Deallocating buffers... [0.019s] Loading trace points... [0.053s] Sorting trace points... [1.38s] Computing alignments... [35.927s] Deallocating buffers... [0.015s] Loading trace points... [0s] Sorting trace points... [1.376s] Computing alignments... [35.264s] Deallocating buffers... [0.015s] Loading trace points... [0s] [574.095s] Deallocating reference... [0.063s] Loading reference sequences... [30.915s] Masking reference... [32.09s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.008s] Building reference histograms... [32.981s] Allocating buffers... [0s] Processing query block 1, reference block 2/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.318s] Building query seed array... [2.255s] Computing hash join... [6.644s] Masking low complexity seeds... [0.296s] Searching alignments... [87.322s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 1/2, index chunk 2/4. Building reference seed array... [13.25s] Building query seed array... [3.228s] Computing hash join... [6.593s] Masking low complexity seeds... [0.276s] Searching alignments... [56.737s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.409s] Building query seed array... [2.944s] Computing hash join... [6.686s] Masking low complexity seeds... [0.262s] Searching alignments... [47.449s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.854s] Building query seed array... [2.539s] Computing hash join... [6.544s] Masking low complexity seeds... [0.254s] Searching alignments... [41.433s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.397s] Building query seed array... [2.263s] Computing hash join... [6.265s] Masking low complexity seeds... [0.252s] Searching alignments... [47.63s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.637s] Building query seed array... [2.658s] Computing hash join... [6.828s] Masking low complexity seeds... [0.349s] Searching alignments... [34.952s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.394s] Building query seed array... [2.628s] Computing hash join... [7.162s] Masking low complexity seeds... [0.249s] Searching alignments... [41.213s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.116s] Building query seed array... [2.271s] Computing hash join... [6.458s] Masking low complexity seeds... [0.254s] Searching alignments... [33.268s] Deallocating memory... [0s] Deallocating buffers... [1.446s] Clearing query masking... [1.724s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [6.859s] Sorting trace points... [1.364s] Computing alignments... [32.781s] Deallocating buffers... [0.021s] Loading trace points... [0s] Sorting trace points... [1.273s] Computing alignments... [32.613s] Deallocating buffers... [0.014s] Loading trace points... [0s] Sorting trace points... [1.232s] Computing alignments... [32.935s] Deallocating buffers... [0.014s] Loading trace points... [0.041s] Sorting trace points... [1.229s] Computing alignments... [32.408s] Deallocating buffers... [0.014s] Loading trace points... [0.077s] Sorting trace points... [1.056s] Computing alignments... [32.526s] Deallocating buffers... [0.016s] Loading trace points... [0.1s] Sorting trace points... [0.938s] Computing alignments... [32.456s] Deallocating buffers... [0.015s] Loading trace points... [0.047s] Sorting trace points... [0.973s] Computing alignments... [32.971s] Deallocating buffers... [0.016s] Loading trace points... [0.038s] Sorting trace points... [1.038s] Computing alignments... [32.453s] Deallocating buffers... [0.015s] Loading trace points... [0.046s] Sorting trace points... [0.97s] Computing alignments... [33.791s] Deallocating buffers... [0.016s] Loading trace points... [0.062s] Sorting trace points... [1.316s] Computing alignments... [35.248s] Deallocating buffers... [0.015s] Loading trace points... [0.07s] Sorting trace points... [1.437s] Computing alignments... [35.659s] Deallocating buffers... [0.059s] Loading trace points... [0.061s] Sorting trace points... [1.421s] Computing alignments... [35.535s] Deallocating buffers... [0.019s] Loading trace points... [0.052s] Sorting trace points... [1.37s] Computing alignments... [35.379s] Deallocating buffers... [0.019s] Loading trace points... [0.064s] Sorting trace points... [1.348s] Computing alignments... [35.343s] Deallocating buffers... [0.018s] Loading trace points... [0.072s] Sorting trace points... [1.173s] Computing alignments... [35.667s] Deallocating buffers... [0.017s] Loading trace points... [0s] Sorting trace points... [1.342s] Computing alignments... [34.942s] Deallocating buffers... [0.015s] Loading trace points... [0s] [570.316s] Deallocating reference... [0.064s] Loading reference sequences... [29.293s] Masking reference... [32.101s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.008s] Building reference histograms... [31.826s] Allocating buffers... [0s] Processing query block 1, reference block 3/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.253s] Building query seed array... [2.22s] Computing hash join... [6.912s] Masking low complexity seeds... [0.323s] Searching alignments... [91.437s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.704s] Building query seed array... [2.784s] Computing hash join... [6.367s] Masking low complexity seeds... [0.33s] Searching alignments... [57.925s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 1/2, index chunk 3/4. Building reference seed array... [14.1s] Building query seed array... [2.967s] Computing hash join... [6.873s] Masking low complexity seeds... [0.274s] Searching alignments... [50.61s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.836s] Building query seed array... [2.387s] Computing hash join... [6.361s] Masking low complexity seeds... [0.269s] Searching alignments... [43.732s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.731s] Building query seed array... [2.166s] Computing hash join... [6.573s] Masking low complexity seeds... [0.276s] Searching alignments... [49.148s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.592s] Building query seed array... [2.534s] Computing hash join... [6.359s] Masking low complexity seeds... [0.267s] Searching alignments... [33.461s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.678s] Building query seed array... [2.572s] Computing hash join... [6.333s] Masking low complexity seeds... [0.252s] Searching alignments... [43.23s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.468s] Building query seed array... [2.212s] Computing hash join... [6.325s] Masking low complexity seeds... [0.283s] Searching alignments... [33.591s] Deallocating memory... [0s] Deallocating buffers... [1.804s] Clearing query masking... [1.823s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [6.621s] Sorting trace points... [1.344s] Computing alignments... [32.713s] Deallocating buffers... [0.022s] Loading trace points... [0.065s] Sorting trace points... [1.333s] Computing alignments... [32.625s] Deallocating buffers... [0.103s] Loading trace points... [1.17s] Sorting trace points... [1.284s] Computing alignments... [33s] Deallocating buffers... [0.017s] Loading trace points... [0.056s] Sorting trace points... [1.25s] Computing alignments... [32.38s] Deallocating buffers... [0.014s] Loading trace points... [0.048s] Sorting trace points... [1.077s] Computing alignments... [32.536s] Deallocating buffers... [0.015s] Loading trace points... [0s] Sorting trace points... [1.305s] Computing alignments... [32.474s] Deallocating buffers... [0.115s] Loading trace points... [0.098s] Sorting trace points... [1.154s] Computing alignments... [33.026s] Deallocating buffers... [0.015s] Loading trace points... [0.067s] Sorting trace points... [1.045s] Computing alignments... [32.479s] Deallocating buffers... [0.016s] Loading trace points... [0.065s] Sorting trace points... [1.283s] Computing alignments... [33.799s] Deallocating buffers... [0.015s] Loading trace points... [0.933s] Sorting trace points... [1.427s] Computing alignments... [35.248s] Deallocating buffers... [0.015s] Loading trace points... [0.065s] Sorting trace points... [1.398s] Computing alignments... [35.519s] Deallocating buffers... [0.015s] Loading trace points... [0.062s] Sorting trace points... [1.298s] Computing alignments... [35.375s] Deallocating buffers... [0.015s] Loading trace points... [0.057s] Sorting trace points... [1.315s] Computing alignments... [35.287s] Deallocating buffers... [0.015s] Loading trace points... [0.06s] Sorting trace points... [1.174s] Computing alignments... [35.339s] Deallocating buffers... [0.016s] Loading trace points... [0.053s] Sorting trace points... [1.434s] Computing alignments... [35.694s] Deallocating buffers... [0.019s] Loading trace points... [0s] Sorting trace points... [1.391s] Computing alignments... [35.016s] Deallocating buffers... [0.129s] Loading trace points... [0s] [573.18s] Deallocating reference... [0.059s] Loading reference sequences... [29.546s] Masking reference... [30.878s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.007s] Building reference histograms... [32s] Allocating buffers... [0.001s] Processing query block 1, reference block 4/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.075s] Building query seed array... [2.242s] Computing hash join... [6.909s] Masking low complexity seeds... [0.574s] Searching alignments... [87.37s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 1/2, index chunk 2/4. Building reference seed array... [13.118s] Building query seed array... [3.015s] Computing hash join... [6.333s] Masking low complexity seeds... [0.267s] Searching alignments... [57.46s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.591s] Building query seed array... [2.949s] Computing hash join... [6.708s] Masking low complexity seeds... [0.272s] Searching alignments... [49.202s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.856s] Building query seed array... [2.446s] Computing hash join... [6.475s] Masking low complexity seeds... [0.273s] Searching alignments... [43.263s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.136s] Building query seed array... [2.118s] Computing hash join... [6.416s] Masking low complexity seeds... [0.265s] Searching alignments... [46.412s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.695s] Building query seed array... [2.608s] Computing hash join... [6.803s] Masking low complexity seeds... [0.341s] Searching alignments... [33.651s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.521s] Building query seed array... [2.657s] Computing hash join... [7.148s] Masking low complexity seeds... [0.322s] Searching alignments... [41.168s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.767s] Building query seed array... [2.253s] Computing hash join... [6.211s] Masking low complexity seeds... [0.244s] Searching alignments... [33.522s] Deallocating memory... [0s] Deallocating buffers... [1.798s] Clearing query masking... [1.709s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [6.605s] Sorting trace points... [1.376s] Computing alignments... [32.674s] Deallocating buffers... [0.016s] Loading trace points... [0.053s] Sorting trace points... [0.885s] Computing alignments... [32.496s] Deallocating buffers... [0.015s] Loading trace points... [0.042s] Sorting trace points... [1.273s] Computing alignments... [32.994s] Deallocating buffers... [0.018s] Loading trace points... [0.046s] Sorting trace points... [1.181s] Computing alignments... [32.274s] Deallocating buffers... [0.014s] Loading trace points... [0.043s] Sorting trace points... [1.209s] Computing alignments... [32.36s] Deallocating buffers... [0.014s] Loading trace points... [0.091s] Sorting trace points... [1.172s] Computing alignments... [32.206s] Deallocating buffers... [0.014s] Loading trace points... [0.059s] Sorting trace points... [1.285s] Computing alignments... [32.721s] Deallocating buffers... [0.015s] Loading trace points... [0.05s] Sorting trace points... [0.961s] Computing alignments... [32.297s] Deallocating buffers... [0.016s] Loading trace points... [0.044s] Sorting trace points... [1.334s] Computing alignments... [33.53s] Deallocating buffers... [0.018s] Loading trace points... [0.065s] Sorting trace points... [1.355s] Computing alignments... [35.103s] Deallocating buffers... [0.018s] Loading trace points... [0.102s] Sorting trace points... [1.402s] Computing alignments... [35.47s] Deallocating buffers... [0.016s] Loading trace points... [0.049s] Sorting trace points... [1.394s] Computing alignments... [35.255s] Deallocating buffers... [0.015s] Loading trace points... [0.057s] Sorting trace points... [1.338s] Computing alignments... [35.233s] Deallocating buffers... [0.015s] Loading trace points... [0.077s] Sorting trace points... [1.423s] Computing alignments... [35.119s] Deallocating buffers... [0.015s] Loading trace points... [0.057s] Sorting trace points... [1.082s] Computing alignments... [35.466s] Deallocating buffers... [0.018s] Loading trace points... [0s] Sorting trace points... [1.35s] Computing alignments... [34.812s] Deallocating buffers... [0.015s] Loading trace points... [0s] [567.997s] Deallocating reference... [0.057s] Loading reference sequences... [30.102s] Masking reference... [30.863s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.007s] Building reference histograms... [32.652s] Allocating buffers... [0.001s] Processing query block 1, reference block 5/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.46s] Building query seed array... [2.263s] Computing hash join... [6.77s] Masking low complexity seeds... [0.265s] Searching alignments... [87.852s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 1/2, index chunk 2/4. Building reference seed array... [13.34s] Building query seed array... [3.227s] Computing hash join... [6.503s] Masking low complexity seeds... [0.269s] Searching alignments... [59.67s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.936s] Building query seed array... [3.029s] Computing hash join... [7.241s] Masking low complexity seeds... [0.401s] Searching alignments... [49.38s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.908s] Building query seed array... [2.428s] Computing hash join... [6.564s] Masking low complexity seeds... [0.286s] Searching alignments... [42.304s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.226s] Building query seed array... [2.15s] Computing hash join... [6.297s] Masking low complexity seeds... [0.284s] Searching alignments... [48.239s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.453s] Building query seed array... [2.543s] Computing hash join... [6.498s] Masking low complexity seeds... [0.24s] Searching alignments... [33.467s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.452s] Building query seed array... [2.696s] Computing hash join... [6.27s] Masking low complexity seeds... [0.236s] Searching alignments... [41.958s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.452s] Building query seed array... [2.277s] Computing hash join... [6.17s] Masking low complexity seeds... [0.251s] Searching alignments... [33.723s] Deallocating memory... [0s] Deallocating buffers... [1.835s] Clearing query masking... [1.737s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [6.612s] Sorting trace points... [1.362s] Computing alignments... [32.675s] Deallocating buffers... [0.017s] Loading trace points... [0.084s] Sorting trace points... [1.391s] Computing alignments... [32.756s] Deallocating buffers... [0.325s] Loading trace points... [0.046s] Sorting trace points... [1.325s] Computing alignments... [32.949s] Deallocating buffers... [0.015s] Loading trace points... [0.047s] Sorting trace points... [1.243s] Computing alignments... [32.222s] Deallocating buffers... [0.017s] Loading trace points... [0.003s] Sorting trace points... [1.325s] Computing alignments... [32.434s] Deallocating buffers... [0.106s] Loading trace points... [0.09s] Sorting trace points... [1.264s] Computing alignments... [32.212s] Deallocating buffers... [0.017s] Loading trace points... [0.074s] Sorting trace points... [1.306s] Computing alignments... [32.781s] Deallocating buffers... [0.018s] Loading trace points... [0.102s] Sorting trace points... [1.269s] Computing alignments... [32.238s] Deallocating buffers... [0.013s] Loading trace points... [0.057s] Sorting trace points... [1.307s] Computing alignments... [33.635s] Deallocating buffers... [0.014s] Loading trace points... [0.069s] Sorting trace points... [1.125s] Computing alignments... [35.128s] Deallocating buffers... [0.017s] Loading trace points... [0.06s] Sorting trace points... [1.467s] Computing alignments... [35.449s] Deallocating buffers... [0.073s] Loading trace points... [0.056s] Sorting trace points... [1.404s] Computing alignments... [35.252s] Deallocating buffers... [0.019s] Loading trace points... [0.053s] Sorting trace points... [1.478s] Computing alignments... [35.203s] Deallocating buffers... [0.034s] Loading trace points... [0.068s] Sorting trace points... [1.399s] Computing alignments... [35.199s] Deallocating buffers... [0.015s] Loading trace points... [0.066s] Sorting trace points... [1.112s] Computing alignments... [35.591s] Deallocating buffers... [0.017s] Loading trace points... [0s] Sorting trace points... [1.313s] Computing alignments... [34.979s] Deallocating buffers... [0.015s] Loading trace points... [0s] [570.296s] Deallocating reference... [0.056s] Loading reference sequences... [250.067s] Masking reference... [31.203s] Initializing dictionary... [0.077s] Initializing temporary storage... [0.306s] Building reference histograms... [32.69s] Allocating buffers... [0s] Processing query block 1, reference block 6/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.513s] Building query seed array... [2.265s] Computing hash join... [6.856s] Masking low complexity seeds... [0.603s] Searching alignments... [84.83s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 1/2, index chunk 2/4. Building reference seed array... [13.449s] Building query seed array... [2.976s] Computing hash join... [5.976s] Masking low complexity seeds... [0.266s] Searching alignments... [54.573s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.681s] Building query seed array... [2.89s] Computing hash join... [6.001s] Masking low complexity seeds... [0.272s] Searching alignments... [47.2s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.644s] Building query seed array... [2.545s] Computing hash join... [6.363s] Masking low complexity seeds... [0.299s] Searching alignments... [41.111s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 2/2, index chunk 1/4. Building reference seed array... [11.157s] Building query seed array... [2.261s] Computing hash join... [6.255s] Masking low complexity seeds... [0.256s] Searching alignments... [44.439s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 2/2, index chunk 2/4. Building reference seed array... [13.158s] Building query seed array... [2.542s] Computing hash join... [6.001s] Masking low complexity seeds... [0.273s] Searching alignments... [32.924s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 2/2, index chunk 3/4. Building reference seed array... [14.093s] Building query seed array... [2.78s] Computing hash join... [6.06s] Masking low complexity seeds... [0.255s] Searching alignments... [40.235s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.556s] Building query seed array... [2.161s] Computing hash join... [5.828s] Masking low complexity seeds... [0.241s] Searching alignments... [32.425s] Deallocating memory... [0s] Deallocating buffers... [2.465s] Clearing query masking... [1.677s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [7.756s] Sorting trace points... [1.308s] Computing alignments... [32.407s] Deallocating buffers... [0.014s] Loading trace points... [0.076s] Sorting trace points... [1.256s] Computing alignments... [32.281s] Deallocating buffers... [0.013s] Loading trace points... [0.179s] Sorting trace points... [0.947s] Computing alignments... [32.757s] Deallocating buffers... [0.016s] Loading trace points... [0.063s] Sorting trace points... [1.253s] Computing alignments... [31.935s] Deallocating buffers... [0.017s] Loading trace points... [0.09s] Sorting trace points... [0.932s] Computing alignments... [32.177s] Deallocating buffers... [0.016s] Loading trace points... [0.091s] Sorting trace points... [1.226s] Computing alignments... [32.066s] Deallocating buffers... [0.014s] Loading trace points... [0.057s] Sorting trace points... [1.272s] Computing alignments... [32.545s] Deallocating buffers... [0.014s] Loading trace points... [0.101s] Sorting trace points... [1.204s] Computing alignments... [32.051s] Deallocating buffers... [0.017s] Loading trace points... [0.079s] Sorting trace points... [1.305s] Computing alignments... [33.369s] Deallocating buffers... [0.015s] Loading trace points... [0.069s] Sorting trace points... [1.327s] Computing alignments... [34.808s] Deallocating buffers... [0.015s] Loading trace points... [0.052s] Sorting trace points... [1.399s] Computing alignments... [35.254s] Deallocating buffers... [0.015s] Loading trace points... [0.001s] Sorting trace points... [1.472s] Computing alignments... [35.072s] Deallocating buffers... [0.21s] Loading trace points... [0s] Sorting trace points... [1.405s] Computing alignments... [34.924s] Deallocating buffers... [0.015s] Loading trace points... [0.072s] Sorting trace points... [1.325s] Computing alignments... [34.946s] Deallocating buffers... [0.015s] Loading trace points... [0.001s] Sorting trace points... [1.121s] Computing alignments... [35.253s] Deallocating buffers... [0.016s] Loading trace points... [0s] Sorting trace points... [1.38s] Computing alignments... [34.562s] Deallocating buffers... [0.093s] Loading trace points... [0s] [565.812s] Deallocating reference... [0.063s] Loading reference sequences... [32.762s] Masking reference... [31.986s] Initializing dictionary... [0.077s] Initializing temporary storage... [0.008s] Building reference histograms... [32.116s] Allocating buffers... [0s] Processing query block 1, reference block 7/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.451s] Building query seed array... [2.33s] Computing hash join... [7.15s] Masking low complexity seeds... [0.262s] Searching alignments... [89.681s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.828s] Building query seed array... [3.268s] Computing hash join... [6.372s] Masking low complexity seeds... [0.264s] Searching alignments... [58.526s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.828s] Building query seed array... [2.806s] Computing hash join... [6.569s] Masking low complexity seeds... [0.268s] Searching alignments... [49.688s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.292s] Building query seed array... [2.542s] Computing hash join... [6.453s] Masking low complexity seeds... [0.278s] Searching alignments... [44.841s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.54s] Building query seed array... [2.176s] Computing hash join... [6.364s] Masking low complexity seeds... [0.278s] Searching alignments... [47.38s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.874s] Building query seed array... [2.465s] Computing hash join... [6.772s] Masking low complexity seeds... [0.324s] Searching alignments... [35.259s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 2/2, index chunk 3/4. Building reference seed array... [14.094s] Building query seed array... [2.614s] Computing hash join... [7.055s] Masking low complexity seeds... [0.257s] Searching alignments... [43.192s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.874s] Building query seed array... [2.333s] Computing hash join... [6.156s] Masking low complexity seeds... [0.247s] Searching alignments... [34.924s] Deallocating memory... [0s] Deallocating buffers... [2.001s] Clearing query masking... [1.741s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [6.66s] Sorting trace points... [1.403s] Computing alignments... [32.7s] Deallocating buffers... [0.014s] Loading trace points... [0.044s] Sorting trace points... [1.086s] Computing alignments... [32.691s] Deallocating buffers... [0.014s] Loading trace points... [0.046s] Sorting trace points... [1.209s] Computing alignments... [33.124s] Deallocating buffers... [0.018s] Loading trace points... [0.057s] Sorting trace points... [0.947s] Computing alignments... [32.375s] Deallocating buffers... [0.016s] Loading trace points... [0.059s] Sorting trace points... [1.225s] Computing alignments... [32.432s] Deallocating buffers... [0.014s] Loading trace points... [0.054s] Sorting trace points... [1.222s] Computing alignments... [32.463s] Deallocating buffers... [0.017s] Loading trace points... [0.079s] Sorting trace points... [1.283s] Computing alignments... [32.967s] Deallocating buffers... [0.014s] Loading trace points... [0.073s] Sorting trace points... [1.242s] Computing alignments... [32.452s] Deallocating buffers... [0.017s] Loading trace points... [0.07s] Sorting trace points... [0.966s] Computing alignments... [33.895s] Deallocating buffers... [0.016s] Loading trace points... [0.08s] Sorting trace points... [1.425s] Computing alignments... [35.298s] Deallocating buffers... [0.019s] Loading trace points... [0.106s] Sorting trace points... [1.397s] Computing alignments... [35.559s] Deallocating buffers... [0.015s] Loading trace points... [0.063s] Sorting trace points... [1.418s] Computing alignments... [35.362s] Deallocating buffers... [0.028s] Loading trace points... [0.053s] Sorting trace points... [1.083s] Computing alignments... [35.266s] Deallocating buffers... [0.017s] Loading trace points... [0.073s] Sorting trace points... [1.419s] Computing alignments... [35.366s] Deallocating buffers... [0.019s] Loading trace points... [1.257s] Sorting trace points... [1.268s] Computing alignments... [35.587s] Deallocating buffers... [0.018s] Loading trace points... [0s] Sorting trace points... [1.326s] Computing alignments... [34.95s] Deallocating buffers... [0.015s] Loading trace points... [0s] [571.732s] Deallocating reference... [0.056s] Loading reference sequences... [30.171s] Masking reference... [30.934s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.008s] Building reference histograms... [32.841s] Allocating buffers... [0s] Processing query block 1, reference block 8/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.369s] Building query seed array... [2.23s] Computing hash join... [6.726s] Masking low complexity seeds... [0.253s] Searching alignments... [90.235s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 1/2, index chunk 2/4. Building reference seed array... [13.113s] Building query seed array... [3.171s] Computing hash join... [7.181s] Masking low complexity seeds... [0.27s] Searching alignments... [57.559s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.291s] Building query seed array... [2.881s] Computing hash join... [7.142s] Masking low complexity seeds... [0.255s] Searching alignments... [49.094s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.894s] Building query seed array... [2.397s] Computing hash join... [6.421s] Masking low complexity seeds... [0.283s] Searching alignments... [43.408s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 2/2, index chunk 1/4. Building reference seed array... [11.029s] Building query seed array... [2.221s] Computing hash join... [6.628s] Masking low complexity seeds... [0.276s] Searching alignments... [46.335s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.718s] Building query seed array... [2.54s] Computing hash join... [6.879s] Masking low complexity seeds... [0.257s] Searching alignments... [33.7s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.626s] Building query seed array... [2.576s] Computing hash join... [6.9s] Masking low complexity seeds... [0.369s] Searching alignments... [41.612s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.56s] Building query seed array... [2.168s] Computing hash join... [6.533s] Masking low complexity seeds... [0.241s] Searching alignments... [33.374s] Deallocating memory... [0s] Deallocating buffers... [2.075s] Clearing query masking... [1.725s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [7.379s] Sorting trace points... [1.296s] Computing alignments... [32.773s] Deallocating buffers... [0.016s] Loading trace points... [0.044s] Sorting trace points... [1.129s] Computing alignments... [32.694s] Deallocating buffers... [0.185s] Loading trace points... [0.06s] Sorting trace points... [1.286s] Computing alignments... [32.996s] Deallocating buffers... [0.014s] Loading trace points... [0.057s] Sorting trace points... [1.188s] Computing alignments... [32.318s] Deallocating buffers... [0.017s] Loading trace points... [0.053s] Sorting trace points... [0.986s] Computing alignments... [32.425s] Deallocating buffers... [0.016s] Loading trace points... [0.068s] Sorting trace points... [1.239s] Computing alignments... [32.45s] Deallocating buffers... [0.014s] Loading trace points... [0.051s] Sorting trace points... [1.279s] Computing alignments... [32.927s] Deallocating buffers... [0.014s] Loading trace points... [0.054s] Sorting trace points... [1.258s] Computing alignments... [32.459s] Deallocating buffers... [0.014s] Loading trace points... [0.067s] Sorting trace points... [1.192s] Computing alignments... [33.819s] Deallocating buffers... [0.015s] Loading trace points... [0.076s] Sorting trace points... [1.4s] Computing alignments... [35.322s] Deallocating buffers... [0.019s] Loading trace points... [0.086s] Sorting trace points... [1.096s] Computing alignments... [35.549s] Deallocating buffers... [0.018s] Loading trace points... [0.069s] Sorting trace points... [1.405s] Computing alignments... [35.456s] Deallocating buffers... [0.015s] Loading trace points... [0.055s] Sorting trace points... [1.411s] Computing alignments... [35.373s] Deallocating buffers... [0.026s] Loading trace points... [0.076s] Sorting trace points... [1.212s] Computing alignments... [35.484s] Deallocating buffers... [0.018s] Loading trace points... [0.065s] Sorting trace points... [1.366s] Computing alignments... [35.777s] Deallocating buffers... [0.015s] Loading trace points... [0s] Sorting trace points... [1.346s] Computing alignments... [35.112s] Deallocating buffers... [0.019s] Loading trace points... [0s] [571.902s] Deallocating reference... [0.062s] Loading reference sequences... [29.727s] Masking reference... [30.891s] Initializing dictionary... [0.077s] Initializing temporary storage... [0.007s] Building reference histograms... [32.549s] Allocating buffers... [0s] Processing query block 1, reference block 9/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.169s] Building query seed array... [2.305s] Computing hash join... [7.259s] Masking low complexity seeds... [0.264s] Searching alignments... [88.368s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 1/2, index chunk 2/4. Building reference seed array... [13.011s] Building query seed array... [3.187s] Computing hash join... [6.38s] Masking low complexity seeds... [0.278s] Searching alignments... [59.06s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 1/2, index chunk 3/4. Building reference seed array... [14.255s] Building query seed array... [2.916s] Computing hash join... [7.142s] Masking low complexity seeds... [0.28s] Searching alignments... [50.112s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.473s] Building query seed array... [2.396s] Computing hash join... [6.447s] Masking low complexity seeds... [0.308s] Searching alignments... [42.921s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.856s] Building query seed array... [2.172s] Computing hash join... [6.557s] Masking low complexity seeds... [0.282s] Searching alignments... [48.03s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.802s] Building query seed array... [2.524s] Computing hash join... [6.966s] Masking low complexity seeds... [0.279s] Searching alignments... [33.866s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.794s] Building query seed array... [2.574s] Computing hash join... [7.043s] Masking low complexity seeds... [0.276s] Searching alignments... [42.594s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.578s] Building query seed array... [2.287s] Computing hash join... [6.373s] Masking low complexity seeds... [0.266s] Searching alignments... [33.54s] Deallocating memory... [0s] Deallocating buffers... [2.012s] Clearing query masking... [1.727s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [6.701s] Sorting trace points... [1.389s] Computing alignments... [32.806s] Deallocating buffers... [0.055s] Loading trace points... [0.001s] Sorting trace points... [1.33s] Computing alignments... [32.747s] Deallocating buffers... [0.27s] Loading trace points... [0.001s] Sorting trace points... [1.271s] Computing alignments... [32.794s] Deallocating buffers... [0.014s] Loading trace points... [0.044s] Sorting trace points... [0.955s] Computing alignments... [32.193s] Deallocating buffers... [0.015s] Loading trace points... [0.001s] Sorting trace points... [1.224s] Computing alignments... [32.289s] Deallocating buffers... [0.017s] Loading trace points... [0.1s] Sorting trace points... [0.896s] Computing alignments... [32.282s] Deallocating buffers... [0.016s] Loading trace points... [0.042s] Sorting trace points... [1.012s] Computing alignments... [32.682s] Deallocating buffers... [0.016s] Loading trace points... [0.047s] Sorting trace points... [1.231s] Computing alignments... [32.247s] Deallocating buffers... [0.014s] Loading trace points... [0.035s] Sorting trace points... [1.241s] Computing alignments... [33.616s] Deallocating buffers... [0.018s] Loading trace points... [0.074s] Sorting trace points... [1.381s] Computing alignments... [35.079s] Deallocating buffers... [0.015s] Loading trace points... [0.061s] Sorting trace points... [1.404s] Computing alignments... [35.388s] Deallocating buffers... [0.019s] Loading trace points... [0.051s] Sorting trace points... [1.379s] Computing alignments... [35.384s] Deallocating buffers... [0.034s] Loading trace points... [0.051s] Sorting trace points... [1.4s] Computing alignments... [35.276s] Deallocating buffers... [0.015s] Loading trace points... [0.078s] Sorting trace points... [1.325s] Computing alignments... [35.226s] Deallocating buffers... [0.015s] Loading trace points... [0.844s] Sorting trace points... [1.338s] Computing alignments... [35.526s] Deallocating buffers... [0.018s] Loading trace points... [0s] Sorting trace points... [1.351s] Computing alignments... [34.895s] Deallocating buffers... [0.019s] Loading trace points... [0s] [569.49s] Deallocating reference... [0.06s] Loading reference sequences... [29.289s] Masking reference... [30.898s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.008s] Building reference histograms... [32.636s] Allocating buffers... [0s] Processing query block 1, reference block 10/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.392s] Building query seed array... [2.223s] Computing hash join... [7.211s] Masking low complexity seeds... [0.257s] Searching alignments... [89.848s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 1/2, index chunk 2/4. Building reference seed array... [13.622s] Building query seed array... [3.113s] Computing hash join... [7.143s] Masking low complexity seeds... [0.259s] Searching alignments... [57.594s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 1/2, index chunk 3/4. Building reference seed array... [14.044s] Building query seed array... [2.976s] Computing hash join... [7.253s] Masking low complexity seeds... [0.263s] Searching alignments... [49.248s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.641s] Building query seed array... [2.438s] Computing hash join... [6.727s] Masking low complexity seeds... [0.329s] Searching alignments... [45.686s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.201s] Building query seed array... [2.184s] Computing hash join... [6.908s] Masking low complexity seeds... [0.246s] Searching alignments... [49.583s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.778s] Building query seed array... [2.493s] Computing hash join... [6.559s] Masking low complexity seeds... [0.261s] Searching alignments... [34.707s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 2/2, index chunk 3/4. Building reference seed array... [14.174s] Building query seed array... [2.696s] Computing hash join... [6.997s] Masking low complexity seeds... [0.27s] Searching alignments... [43.588s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.663s] Building query seed array... [2.168s] Computing hash join... [7.036s] Masking low complexity seeds... [0.245s] Searching alignments... [34.844s] Deallocating memory... [0s] Deallocating buffers... [2.075s] Clearing query masking... [1.72s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [6.629s] Sorting trace points... [1.372s] Computing alignments... [32.748s] Deallocating buffers... [0.018s] Loading trace points... [0.041s] Sorting trace points... [1.423s] Computing alignments... [32.746s] Deallocating buffers... [0.342s] Loading trace points... [0.045s] Sorting trace points... [1.179s] Computing alignments... [32.972s] Deallocating buffers... [0.014s] Loading trace points... [0.067s] Sorting trace points... [0.91s] Computing alignments... [32.347s] Deallocating buffers... [0.016s] Loading trace points... [0.099s] Sorting trace points... [0.964s] Computing alignments... [32.377s] Deallocating buffers... [0.016s] Loading trace points... [0.074s] Sorting trace points... [1.275s] Computing alignments... [32.342s] Deallocating buffers... [0.014s] Loading trace points... [0.604s] Sorting trace points... [1.326s] Computing alignments... [32.937s] Deallocating buffers... [0.032s] Loading trace points... [0.04s] Sorting trace points... [1.263s] Computing alignments... [32.558s] Deallocating buffers... [0.014s] Loading trace points... [0.044s] Sorting trace points... [1.303s] Computing alignments... [33.828s] Deallocating buffers... [0.057s] Loading trace points... [0.066s] Sorting trace points... [1.268s] Computing alignments... [35.338s] Deallocating buffers... [0.016s] Loading trace points... [0.05s] Sorting trace points... [1.37s] Computing alignments... [35.683s] Deallocating buffers... [0.019s] Loading trace points... [1.057s] Sorting trace points... [1.537s] Computing alignments... [35.555s] Deallocating buffers... [0.079s] Loading trace points... [0.052s] Sorting trace points... [1.446s] Computing alignments... [35.409s] Deallocating buffers... [0.019s] Loading trace points... [0.098s] Sorting trace points... [1.017s] Computing alignments... [35.41s] Deallocating buffers... [0.017s] Loading trace points... [0.062s] Sorting trace points... [1.391s] Computing alignments... [35.645s] Deallocating buffers... [0.015s] Loading trace points... [0s] Sorting trace points... [1.258s] Computing alignments... [35.046s] Deallocating buffers... [0.016s] Loading trace points... [0s] [573.174s] Deallocating reference... [0.056s] Loading reference sequences... [30.254s] Masking reference... [30.95s] Initializing dictionary... [0.079s] Initializing temporary storage... [0.008s] Building reference histograms... [32.538s] Allocating buffers... [0s] Processing query block 1, reference block 11/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.11s] Building query seed array... [2.25s] Computing hash join... [7.632s] Masking low complexity seeds... [0.269s] Searching alignments... [84.623s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.767s] Building query seed array... [3.233s] Computing hash join... [7.242s] Masking low complexity seeds... [0.253s] Searching alignments... [57.393s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.927s] Building query seed array... [3.108s] Computing hash join... [7.159s] Masking low complexity seeds... [0.362s] Searching alignments... [47.692s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.861s] Building query seed array... [2.437s] Computing hash join... [6.605s] Masking low complexity seeds... [0.298s] Searching alignments... [41.397s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.923s] Building query seed array... [2.192s] Computing hash join... [6.601s] Masking low complexity seeds... [0.268s] Searching alignments... [46.757s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.38s] Building query seed array... [2.513s] Computing hash join... [6.972s] Masking low complexity seeds... [0.301s] Searching alignments... [33.785s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.436s] Building query seed array... [2.733s] Computing hash join... [7.002s] Masking low complexity seeds... [0.279s] Searching alignments... [40.967s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.241s] Building query seed array... [2.25s] Computing hash join... [6.32s] Masking low complexity seeds... [0.238s] Searching alignments... [33.194s] Deallocating memory... [0s] Deallocating buffers... [2.125s] Clearing query masking... [1.731s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [7.309s] Sorting trace points... [1.365s] Computing alignments... [32.582s] Deallocating buffers... [0.017s] Loading trace points... [0.086s] Sorting trace points... [1.008s] Computing alignments... [32.471s] Deallocating buffers... [0.016s] Loading trace points... [0.095s] Sorting trace points... [1.261s] Computing alignments... [32.924s] Deallocating buffers... [0.014s] Loading trace points... [0.047s] Sorting trace points... [0.905s] Computing alignments... [32.276s] Deallocating buffers... [0.016s] Loading trace points... [0.075s] Sorting trace points... [1.241s] Computing alignments... [32.258s] Deallocating buffers... [0.014s] Loading trace points... [0.093s] Sorting trace points... [1.259s] Computing alignments... [32.185s] Deallocating buffers... [0.014s] Loading trace points... [0s] Sorting trace points... [1.279s] Computing alignments... [32.742s] Deallocating buffers... [0.017s] Loading trace points... [0.002s] Sorting trace points... [1.213s] Computing alignments... [32.199s] Deallocating buffers... [0.037s] Loading trace points... [0.053s] Sorting trace points... [0.977s] Computing alignments... [33.593s] Deallocating buffers... [0.016s] Loading trace points... [0.069s] Sorting trace points... [1.385s] Computing alignments... [35.125s] Deallocating buffers... [0.015s] Loading trace points... [0.074s] Sorting trace points... [1.41s] Computing alignments... [35.402s] Deallocating buffers... [0.057s] Loading trace points... [0.061s] Sorting trace points... [1.432s] Computing alignments... [35.269s] Deallocating buffers... [0.019s] Loading trace points... [0.065s] Sorting trace points... [1.34s] Computing alignments... [35.167s] Deallocating buffers... [0.015s] Loading trace points... [0.087s] Sorting trace points... [1.147s] Computing alignments... [35.108s] Deallocating buffers... [0.018s] Loading trace points... [0.066s] Sorting trace points... [1.393s] Computing alignments... [35.441s] Deallocating buffers... [0.019s] Loading trace points... [0s] Sorting trace points... [1.018s] Computing alignments... [34.905s] Deallocating buffers... [0.016s] Loading trace points... [0s] [568.031s] Deallocating reference... [0.068s] Loading reference sequences... [29.807s] Masking reference... [30.914s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.008s] Building reference histograms... [32.404s] Allocating buffers... [0s] Processing query block 1, reference block 12/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.295s] Building query seed array... [2.242s] Computing hash join... [7.336s] Masking low complexity seeds... [0.251s] Searching alignments... [88.748s] Deallocating memory... [0.033s] Processing query block 1, reference block 12/14, shape 1/2, index chunk 2/4. Building reference seed array... [13.224s] Building query seed array... [2.994s] Computing hash join... [7.172s] Masking low complexity seeds... [0.299s] Searching alignments... [58.915s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 1/2, index chunk 3/4. Building reference seed array... [14.27s] Building query seed array... [3.001s] Computing hash join... [7.197s] Masking low complexity seeds... [0.255s] Searching alignments... [50.367s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 1/2, index chunk 4/4. Building reference seed array... [11.007s] Building query seed array... [2.436s] Computing hash join... [6.661s] Masking low complexity seeds... [0.311s] Searching alignments... [44.824s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.432s] Building query seed array... [2.173s] Computing hash join... [6.991s] Masking low complexity seeds... [0.25s] Searching alignments... [48.522s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.99s] Building query seed array... [2.548s] Computing hash join... [6.371s] Masking low complexity seeds... [0.309s] Searching alignments... [33.355s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.58s] Building query seed array... [2.526s] Computing hash join... [6.418s] Masking low complexity seeds... [0.263s] Searching alignments... [43.182s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.057s] Building query seed array... [2.379s] Computing hash join... [6.563s] Masking low complexity seeds... [0.309s] Searching alignments... [33.491s] Deallocating memory... [0s] Deallocating buffers... [2.232s] Clearing query masking... [1.723s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [6.961s] Sorting trace points... [1.363s] Computing alignments... [32.813s] Deallocating buffers... [0.016s] Loading trace points... [0.044s] Sorting trace points... [1.385s] Computing alignments... [32.695s] Deallocating buffers... [0.062s] Loading trace points... [0.038s] Sorting trace points... [0.977s] Computing alignments... [33.008s] Deallocating buffers... [0.016s] Loading trace points... [0.052s] Sorting trace points... [1.237s] Computing alignments... [32.296s] Deallocating buffers... [0.014s] Loading trace points... [0.043s] Sorting trace points... [1.247s] Computing alignments... [32.451s] Deallocating buffers... [0.017s] Loading trace points... [0s] Sorting trace points... [1.308s] Computing alignments... [32.483s] Deallocating buffers... [0.032s] Loading trace points... [0.046s] Sorting trace points... [0.915s] Computing alignments... [32.933s] Deallocating buffers... [0.015s] Loading trace points... [0.042s] Sorting trace points... [1.256s] Computing alignments... [32.442s] Deallocating buffers... [0.017s] Loading trace points... [0.044s] Sorting trace points... [0.92s] Computing alignments... [33.814s] Deallocating buffers... [0.016s] Loading trace points... [0.076s] Sorting trace points... [1.382s] Computing alignments... [35.266s] Deallocating buffers... [0.015s] Loading trace points... [0.06s] Sorting trace points... [1.331s] Computing alignments... [36.174s] Deallocating buffers... [0.019s] Loading trace points... [0.053s] Sorting trace points... [1.071s] Computing alignments... [35.476s] Deallocating buffers... [0.017s] Loading trace points... [0.063s] Sorting trace points... [1.435s] Computing alignments... [35.395s] Deallocating buffers... [0.019s] Loading trace points... [0.061s] Sorting trace points... [1.562s] Computing alignments... [35.422s] Deallocating buffers... [0.207s] Loading trace points... [0.67s] Sorting trace points... [1.137s] Computing alignments... [35.812s] Deallocating buffers... [0.017s] Loading trace points... [0s] Sorting trace points... [1.363s] Computing alignments... [35.267s] Deallocating buffers... [0.015s] Loading trace points... [0s] [572.592s] Deallocating reference... [0.058s] Loading reference sequences... [29.263s] Masking reference... [30.887s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.008s] Building reference histograms... [32.289s] Allocating buffers... [0s] Processing query block 1, reference block 13/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.453s] Building query seed array... [2.204s] Computing hash join... [7.061s] Masking low complexity seeds... [0.262s] Searching alignments... [91.136s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 1/2, index chunk 2/4. Building reference seed array... [13.813s] Building query seed array... [3.132s] Computing hash join... [6.596s] Masking low complexity seeds... [0.284s] Searching alignments... [58.589s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 1/2, index chunk 3/4. Building reference seed array... [14.34s] Building query seed array... [3.008s] Computing hash join... [6.562s] Masking low complexity seeds... [0.261s] Searching alignments... [49.827s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.98s] Building query seed array... [2.42s] Computing hash join... [6.099s] Masking low complexity seeds... [0.313s] Searching alignments... [43.865s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 2/2, index chunk 1/4. Building reference seed array... [11.159s] Building query seed array... [2.227s] Computing hash join... [6.098s] Masking low complexity seeds... [0.258s] Searching alignments... [47.735s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 2/2, index chunk 2/4. Building reference seed array... [13.049s] Building query seed array... [2.582s] Computing hash join... [6.197s] Masking low complexity seeds... [0.25s] Searching alignments... [34.77s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.67s] Building query seed array... [2.643s] Computing hash join... [6.559s] Masking low complexity seeds... [0.289s] Searching alignments... [42.922s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 2/2, index chunk 4/4. Building reference seed array... [11.247s] Building query seed array... [2.198s] Computing hash join... [5.948s] Masking low complexity seeds... [0.282s] Searching alignments... [35.631s] Deallocating memory... [0s] Deallocating buffers... [2.705s] Clearing query masking... [1.657s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [6.602s] Sorting trace points... [1.289s] Computing alignments... [32.762s] Deallocating buffers... [0.022s] Loading trace points... [0.04s] Sorting trace points... [1.25s] Computing alignments... [32.451s] Deallocating buffers... [0.014s] Loading trace points... [0.047s] Sorting trace points... [1.235s] Computing alignments... [32.933s] Deallocating buffers... [0.068s] Loading trace points... [0.045s] Sorting trace points... [1.157s] Computing alignments... [32.28s] Deallocating buffers... [0.017s] Loading trace points... [0.001s] Sorting trace points... [1.097s] Computing alignments... [32.336s] Deallocating buffers... [0.014s] Loading trace points... [0.069s] Sorting trace points... [0.889s] Computing alignments... [32.309s] Deallocating buffers... [0.015s] Loading trace points... [0.076s] Sorting trace points... [1.044s] Computing alignments... [32.876s] Deallocating buffers... [0.015s] Loading trace points... [0.04s] Sorting trace points... [1.284s] Computing alignments... [32.394s] Deallocating buffers... [0.014s] Loading trace points... [0.063s] Sorting trace points... [1.338s] Computing alignments... [33.856s] Deallocating buffers... [0.048s] Loading trace points... [0.06s] Sorting trace points... [1.38s] Computing alignments... [35.269s] Deallocating buffers... [0.016s] Loading trace points... [0.064s] Sorting trace points... [1.563s] Computing alignments... [35.717s] Deallocating buffers... [0.273s] Loading trace points... [0.048s] Sorting trace points... [1.425s] Computing alignments... [35.427s] Deallocating buffers... [0.015s] Loading trace points... [0.087s] Sorting trace points... [1.12s] Computing alignments... [35.357s] Deallocating buffers... [0.018s] Loading trace points... [0.07s] Sorting trace points... [1.169s] Computing alignments... [35.339s] Deallocating buffers... [0.017s] Loading trace points... [0.053s] Sorting trace points... [1.173s] Computing alignments... [35.555s] Deallocating buffers... [0.018s] Loading trace points... [0s] Sorting trace points... [1.114s] Computing alignments... [34.83s] Deallocating buffers... [0.016s] Loading trace points... [0s] [569.379s] Deallocating reference... [0.057s] Loading reference sequences... [25.971s] Masking reference... [25.694s] Initializing dictionary... [0.064s] Initializing temporary storage... [0.009s] Building reference histograms... [26.034s] Allocating buffers... [0s] Processing query block 1, reference block 14/14, shape 1/2, index chunk 1/4. Building reference seed array... [8.75s] Building query seed array... [2.208s] Computing hash join... [5.372s] Masking low complexity seeds... [0.239s] Searching alignments... [71.957s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 1/2, index chunk 2/4. Building reference seed array... [10.04s] Building query seed array... [3.09s] Computing hash join... [5.286s] Masking low complexity seeds... [0.248s] Searching alignments... [46.296s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 1/2, index chunk 3/4. Building reference seed array... [11.182s] Building query seed array... [2.97s] Computing hash join... [5.393s] Masking low complexity seeds... [0.238s] Searching alignments... [39.014s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 1/2, index chunk 4/4. Building reference seed array... [8.3s] Building query seed array... [2.275s] Computing hash join... [5.155s] Masking low complexity seeds... [0.249s] Searching alignments... [34.699s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 2/2, index chunk 1/4. Building reference seed array... [8.408s] Building query seed array... [2.151s] Computing hash join... [5.011s] Masking low complexity seeds... [0.228s] Searching alignments... [39.557s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 2/2, index chunk 2/4. Building reference seed array... [10.452s] Building query seed array... [2.412s] Computing hash join... [5.17s] Masking low complexity seeds... [0.225s] Searching alignments... [29.032s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 2/2, index chunk 3/4. Building reference seed array... [11.078s] Building query seed array... [2.657s] Computing hash join... [5.114s] Masking low complexity seeds... [0.23s] Searching alignments... [33.649s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 2/2, index chunk 4/4. Building reference seed array... [8.472s] Building query seed array... [2.079s] Computing hash join... [5.035s] Masking low complexity seeds... [0.232s] Searching alignments... [27.5s] Deallocating memory... [0s] Deallocating buffers... [1.003s] Clearing query masking... [1.757s] Opening temporary output file... [0.019s] Computing alignments... Loading trace points... [11.077s] Sorting trace points... [2.074s] Computing alignments... [51.978s] Deallocating buffers... [0.027s] Loading trace points... [0.125s] Sorting trace points... [2.083s] Computing alignments... [51.976s] Deallocating buffers... [0.196s] Loading trace points... [0.69s] Sorting trace points... [2.088s] Computing alignments... [51.473s] Deallocating buffers... [0.022s] Loading trace points... [0.142s] Sorting trace points... [1.877s] Computing alignments... [52.026s] Deallocating buffers... [0.024s] Loading trace points... [0.055s] Sorting trace points... [1.915s] Computing alignments... [54.409s] Deallocating buffers... [0.025s] Loading trace points... [0.072s] Sorting trace points... [0.887s] Computing alignments... [28.257s] Deallocating buffers... [0.014s] Loading trace points... [0.069s] Sorting trace points... [1.075s] Computing alignments... [28.147s] Deallocating buffers... [0.012s] Loading trace points... [0.073s] Sorting trace points... [1.086s] Computing alignments... [28.06s] Deallocating buffers... [0.015s] Loading trace points... [0.073s] Sorting trace points... [1.094s] Computing alignments... [28.06s] Deallocating buffers... [0.012s] Loading trace points... [0.055s] Sorting trace points... [1.103s] Computing alignments... [28.295s] Deallocating buffers... [0.013s] Loading trace points... [0s] Sorting trace points... [0.867s] Computing alignments... [27.682s] Deallocating buffers... [0.014s] Loading trace points... [0s] [460.111s] Deallocating reference... [0.047s] Loading reference sequences... [0.085s] Deallocating buffers... [0s] Joining output blocks... Joining output blocks... [2289.22s] [2289.22s] Deallocating queries... [0.08s] Loading query sequences... [0s] Closing the input file... [0s] Closing the output file... Loading dictionary... [3.937s] [5.018s] Closing the database... [0s] Cleaning up... [0s] Total time = 19722.9s Reported 2567861253 pairwise alignments, 2567861253 HSPs. 14492631 queries aligned. DIAMOND BLASTx on /gscratch/srlab/sam/data/P_verrucosa/RNAseq/E3_R2.fastp-trim.20230215.fq.gz complete: E3_R2.blastx.meganized.daa Now MEGANizing E3_R2.blastx.meganized.daa Version MEGAN Community Edition (version 6.22.0, built 19 Feb 2022) Author(s) Daniel H. Huson Copyright (C) 2022 Daniel H. Huson. This program comes with ABSOLUTELY NO WARRANTY. Java version: 17.0.2 Functional classifications to use: EC, EGGNOG, GTDB, INTERPRO2GO, SEED Loading ncbi.map: 2,396,736 Loading ncbi.tre: 2,396,740 Loading ec.map: 8,200 Loading ec.tre: 8,204 Loading eggnog.map: 30,875 Loading eggnog.tre: 30,986 Loading gtdb.map: 240,103 Loading gtdb.tre: 240,107 Loading interpro2go.map: 14,242 Loading interpro2go.tre: 28,907 Loading seed.map: 961 Loading seed.tre: 962 Meganizing: E3_R2.blastx.meganized.daa Meganizing init Annotating DAA file using FAST mode (accession database and first accession per line) Annotating references 10% 20% 30% 40% 50% 60% 70% 100% (542.8s) Writing 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (1.2s) Binning reads Initializing... Initializing binning... Using 'Naive LCA' algorithm for binning: Taxonomy Using Best-Hit algorithm for binning: SEED Using Best-Hit algorithm for binning: EGGNOG Using 'Naive LCA' algorithm for binning: GTDB Using Best-Hit algorithm for binning: EC Using Best-Hit algorithm for binning: INTERPRO2GO Binning reads... Binning reads Analyzing alignments 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (4,917.9s) Total reads: 14,492,631 With hits: 14,492,631 Alignments: 2,565,346,865 Assig. Taxonomy: 13,390,191 Assig. SEED: 113,916 Assig. EGGNOG: 57,439 Assig. GTDB: 402,437 Assig. EC: 2,240,454 Assig. INTERPRO2GO: 1,250,620 MinSupport set to: 7246 Binning reads Applying min-support & disabled filter to Taxonomy... 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (0.3s) Min-supp. changes: 3,975 Binning reads Applying min-support & disabled filter to GTDB... 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (12.2s) Min-supp. changes: 3,053 Binning reads Writing classification tables 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (35.0s) Binning reads Syncing 100% (0.4s) Class. Taxonomy: 59 Class. SEED: 495 Class. EGGNOG: 1,802 Class. GTDB: 17 Class. EC: 2,406 Class. INTERPRO2GO: 7,857 Total time: 5,518s Peak memory: 34.2 of 195.3G MEGANization of E3_R2.blastx.meganized.daa completed. Generating MD5 checksum for /gscratch/srlab/sam/data/P_verrucosa/RNAseq/E4_R1.fastp-trim.20230215.fq.gz... 6ad62643f054016102c390c775060aa6 /gscratch/srlab/sam/data/P_verrucosa/RNAseq/E4_R1.fastp-trim.20230215.fq.gz Running DIAMOND BLASTx on /gscratch/srlab/sam/data/P_verrucosa/RNAseq/E4_R1.fastp-trim.20230215.fq.gz. diamond v2.1.1.155 (C) Max Planck Society for the Advancement of Science Documentation, support and updates available at http://www.diamondsearch.org Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021) #CPU threads: 40 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: Percentage range of top alignment score to report hits: 5 Opening the database... [0.39s] Database: /gscratch/srlab/blastdbs/20230215-ncbi-nr/20230215-ncbi-nr.dmnd (type: Diamond database, sequences: 526308523, letters: 207134680681) Block size = 15000000000 Opening the input file... [1.208s] Opening the output file... [0s] Loading query sequences... [66.657s] Masking queries... [16.721s] Algorithm: Double-indexed Building query histograms... [15.482s] Loading reference sequences... [31.815s] Masking reference... [32.132s] Initializing dictionary... [0.08s] Initializing temporary storage... [0.008s] Building reference histograms... [32.509s] Allocating buffers... [0s] Processing query block 1, reference block 1/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.131s] Building query seed array... [1.857s] Computing hash join... [6.465s] Masking low complexity seeds... [0.269s] Searching alignments... [73.464s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.605s] Building query seed array... [2.699s] Computing hash join... [6.103s] Masking low complexity seeds... [0.21s] Searching alignments... [47.479s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 1/2, index chunk 3/4. Building reference seed array... [14s] Building query seed array... [2.632s] Computing hash join... [5.779s] Masking low complexity seeds... [0.254s] Searching alignments... [40.417s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.695s] Building query seed array... [2.106s] Computing hash join... [5.894s] Masking low complexity seeds... [0.247s] Searching alignments... [35.286s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.202s] Building query seed array... [1.92s] Computing hash join... [5.607s] Masking low complexity seeds... [0.24s] Searching alignments... [36.19s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.53s] Building query seed array... [2.104s] Computing hash join... [5.625s] Masking low complexity seeds... [0.238s] Searching alignments... [28.324s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.953s] Building query seed array... [2.308s] Computing hash join... [5.749s] Masking low complexity seeds... [0.192s] Searching alignments... [33.092s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.56s] Building query seed array... [1.884s] Computing hash join... [5.648s] Masking low complexity seeds... [0.206s] Searching alignments... [28.7s] Deallocating memory... [0s] Deallocating buffers... [1.964s] Clearing query masking... [1.502s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [11.805s] Sorting trace points... [2.205s] Computing alignments... [56.786s] Deallocating buffers... [0.029s] Loading trace points... [0.123s] Sorting trace points... [2.25s] Computing alignments... [57.1s] Deallocating buffers... [0.03s] Loading trace points... [0.179s] Sorting trace points... [2.148s] Computing alignments... [56.497s] Deallocating buffers... [0.024s] Loading trace points... [0.059s] Sorting trace points... [2.523s] Computing alignments... [56.605s] Deallocating buffers... [0.227s] Loading trace points... [0.09s] Sorting trace points... [1.247s] Computing alignments... [29.134s] Deallocating buffers... [0.193s] Loading trace points... [0.058s] Sorting trace points... [1.157s] Computing alignments... [29.83s] Deallocating buffers... [0.013s] Loading trace points... [0.055s] Sorting trace points... [1.089s] Computing alignments... [29.95s] Deallocating buffers... [0.013s] Loading trace points... [0.08s] Sorting trace points... [0.811s] Computing alignments... [29.705s] Deallocating buffers... [0.015s] Loading trace points... [0.072s] Sorting trace points... [1.117s] Computing alignments... [29.986s] Deallocating buffers... [0.013s] Loading trace points... [0.078s] Sorting trace points... [1.073s] Computing alignments... [30.02s] Deallocating buffers... [0.015s] Loading trace points... [0.066s] Sorting trace points... [1.141s] Computing alignments... [30.054s] Deallocating buffers... [0.016s] Loading trace points... [0s] Sorting trace points... [1.216s] Computing alignments... [29.746s] Deallocating buffers... [0.239s] Loading trace points... [0s] [497.09s] Deallocating reference... [0.246s] Loading reference sequences... [29.202s] Masking reference... [30.979s] Initializing dictionary... [0.077s] Initializing temporary storage... [0.007s] Building reference histograms... [32.236s] Allocating buffers... [0.001s] Processing query block 1, reference block 2/14, shape 1/2, index chunk 1/4. Building reference seed array... [9.805s] Building query seed array... [1.872s] Computing hash join... [6.615s] Masking low complexity seeds... [0.225s] Searching alignments... [72.051s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.304s] Building query seed array... [2.743s] Computing hash join... [6.226s] Masking low complexity seeds... [0.215s] Searching alignments... [44.763s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.392s] Building query seed array... [2.375s] Computing hash join... [6.987s] Masking low complexity seeds... [0.21s] Searching alignments... [39.631s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.193s] Building query seed array... [2.189s] Computing hash join... [6.316s] Masking low complexity seeds... [0.204s] Searching alignments... [34.839s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.562s] Building query seed array... [1.906s] Computing hash join... [6.218s] Masking low complexity seeds... [0.193s] Searching alignments... [36.096s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.608s] Building query seed array... [2.23s] Computing hash join... [6.054s] Masking low complexity seeds... [0.193s] Searching alignments... [27.98s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.654s] Building query seed array... [2.273s] Computing hash join... [6.189s] Masking low complexity seeds... [0.194s] Searching alignments... [32.313s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.348s] Building query seed array... [1.983s] Computing hash join... [6.304s] Masking low complexity seeds... [0.202s] Searching alignments... [28.155s] Deallocating memory... [0s] Deallocating buffers... [1.181s] Clearing query masking... [1.461s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [12.363s] Sorting trace points... [2.416s] Computing alignments... [56.532s] Deallocating buffers... [0.025s] Loading trace points... [0.151s] Sorting trace points... [1.951s] Computing alignments... [56.95s] Deallocating buffers... [0.107s] Loading trace points... [0.156s] Sorting trace points... [2.403s] Computing alignments... [56.384s] Deallocating buffers... [0.436s] Loading trace points... [0.067s] Sorting trace points... [1.697s] Computing alignments... [56.199s] Deallocating buffers... [0.025s] Loading trace points... [0.087s] Sorting trace points... [1.179s] Computing alignments... [28.864s] Deallocating buffers... [0.081s] Loading trace points... [0.089s] Sorting trace points... [1.057s] Computing alignments... [29.619s] Deallocating buffers... [0.015s] Loading trace points... [0.061s] Sorting trace points... [1.145s] Computing alignments... [29.629s] Deallocating buffers... [0.013s] Loading trace points... [0.067s] Sorting trace points... [1.117s] Computing alignments... [29.46s] Deallocating buffers... [0.012s] Loading trace points... [0.062s] Sorting trace points... [1.098s] Computing alignments... [29.886s] Deallocating buffers... [0.016s] Loading trace points... [0.083s] Sorting trace points... [1.241s] Computing alignments... [29.719s] Deallocating buffers... [0.159s] Loading trace points... [0.092s] Sorting trace points... [1.181s] Computing alignments... [29.681s] Deallocating buffers... [0.042s] Loading trace points... [0s] Sorting trace points... [0.864s] Computing alignments... [29.505s] Deallocating buffers... [0.014s] Loading trace points... [0s] [494.271s] Deallocating reference... [0.063s] Loading reference sequences... [31.526s] Masking reference... [30.984s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.008s] Building reference histograms... [32.287s] Allocating buffers... [0.001s] Processing query block 1, reference block 3/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.097s] Building query seed array... [1.907s] Computing hash join... [6.519s] Masking low complexity seeds... [0.257s] Searching alignments... [73.046s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 1/2, index chunk 2/4. Building reference seed array... [13.078s] Building query seed array... [2.637s] Computing hash join... [6.572s] Masking low complexity seeds... [0.216s] Searching alignments... [50.227s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.461s] Building query seed array... [2.452s] Computing hash join... [6.3s] Masking low complexity seeds... [0.222s] Searching alignments... [40.593s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.286s] Building query seed array... [2.183s] Computing hash join... [6.392s] Masking low complexity seeds... [0.217s] Searching alignments... [36.28s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.366s] Building query seed array... [1.843s] Computing hash join... [6.165s] Masking low complexity seeds... [0.213s] Searching alignments... [36.038s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.411s] Building query seed array... [2.167s] Computing hash join... [6.181s] Masking low complexity seeds... [0.212s] Searching alignments... [28.417s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.237s] Building query seed array... [2.212s] Computing hash join... [6.164s] Masking low complexity seeds... [0.189s] Searching alignments... [33.514s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.289s] Building query seed array... [1.938s] Computing hash join... [6.316s] Masking low complexity seeds... [0.208s] Searching alignments... [29.04s] Deallocating memory... [0s] Deallocating buffers... [1.264s] Clearing query masking... [1.462s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [12.186s] Sorting trace points... [1.988s] Computing alignments... [56.309s] Deallocating buffers... [0.027s] Loading trace points... [0.179s] Sorting trace points... [1.792s] Computing alignments... [59.229s] Deallocating buffers... [0.027s] Loading trace points... [0.156s] Sorting trace points... [2.447s] Computing alignments... [56.637s] Deallocating buffers... [0.451s] Loading trace points... [0.074s] Sorting trace points... [2.039s] Computing alignments... [56.032s] Deallocating buffers... [0.024s] Loading trace points... [0.095s] Sorting trace points... [1.078s] Computing alignments... [30.203s] Deallocating buffers... [0.015s] Loading trace points... [0.075s] Sorting trace points... [0.843s] Computing alignments... [29.539s] Deallocating buffers... [0.014s] Loading trace points... [0.052s] Sorting trace points... [1.126s] Computing alignments... [29.707s] Deallocating buffers... [0.013s] Loading trace points... [0.654s] Sorting trace points... [1.146s] Computing alignments... [30.797s] Deallocating buffers... [0.012s] Loading trace points... [0.084s] Sorting trace points... [1.105s] Computing alignments... [29.827s] Deallocating buffers... [0.013s] Loading trace points... [0.079s] Sorting trace points... [1.142s] Computing alignments... [29.694s] Deallocating buffers... [0.015s] Loading trace points... [0.091s] Sorting trace points... [1.128s] Computing alignments... [31.069s] Deallocating buffers... [0.012s] Loading trace points... [0s] Sorting trace points... [0.854s] Computing alignments... [29.395s] Deallocating buffers... [0.035s] Loading trace points... [0s] [499.817s] Deallocating reference... [0.057s] Loading reference sequences... [30.448s] Masking reference... [32.202s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.008s] Building reference histograms... [32.085s] Allocating buffers... [0s] Processing query block 1, reference block 4/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.089s] Building query seed array... [1.914s] Computing hash join... [6.665s] Masking low complexity seeds... [0.216s] Searching alignments... [71.47s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.777s] Building query seed array... [2.771s] Computing hash join... [6.534s] Masking low complexity seeds... [0.212s] Searching alignments... [45.772s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.908s] Building query seed array... [2.536s] Computing hash join... [6.519s] Masking low complexity seeds... [0.277s] Searching alignments... [39.582s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.084s] Building query seed array... [2.006s] Computing hash join... [6.434s] Masking low complexity seeds... [0.219s] Searching alignments... [35.046s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.565s] Building query seed array... [1.936s] Computing hash join... [6.245s] Masking low complexity seeds... [0.264s] Searching alignments... [35.832s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.168s] Building query seed array... [2.075s] Computing hash join... [6.377s] Masking low complexity seeds... [0.274s] Searching alignments... [28.328s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.707s] Building query seed array... [2.261s] Computing hash join... [6.234s] Masking low complexity seeds... [0.193s] Searching alignments... [32.367s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.033s] Building query seed array... [1.933s] Computing hash join... [6.362s] Masking low complexity seeds... [0.2s] Searching alignments... [29.756s] Deallocating memory... [0s] Deallocating buffers... [1.4s] Clearing query masking... [1.592s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [11.167s] Sorting trace points... [2.34s] Computing alignments... [57.256s] Deallocating buffers... [0.024s] Loading trace points... [0.132s] Sorting trace points... [2.255s] Computing alignments... [56.586s] Deallocating buffers... [0.21s] Loading trace points... [0.185s] Sorting trace points... [2.47s] Computing alignments... [55.959s] Deallocating buffers... [0.166s] Loading trace points... [0.09s] Sorting trace points... [2.193s] Computing alignments... [56.244s] Deallocating buffers... [0.396s] Loading trace points... [0.1s] Sorting trace points... [1.154s] Computing alignments... [28.89s] Deallocating buffers... [0.012s] Loading trace points... [0.071s] Sorting trace points... [1.113s] Computing alignments... [29.64s] Deallocating buffers... [0.013s] Loading trace points... [0.055s] Sorting trace points... [1.181s] Computing alignments... [29.756s] Deallocating buffers... [0.016s] Loading trace points... [0.082s] Sorting trace points... [1.243s] Computing alignments... [29.576s] Deallocating buffers... [0.221s] Loading trace points... [0.07s] Sorting trace points... [1.158s] Computing alignments... [30.008s] Deallocating buffers... [0.013s] Loading trace points... [0.071s] Sorting trace points... [0.871s] Computing alignments... [29.795s] Deallocating buffers... [0.015s] Loading trace points... [0.094s] Sorting trace points... [0.992s] Computing alignments... [29.749s] Deallocating buffers... [0.015s] Loading trace points... [0s] Sorting trace points... [1.104s] Computing alignments... [29.607s] Deallocating buffers... [0.016s] Loading trace points... [0s] [494.677s] Deallocating reference... [0.06s] Loading reference sequences... [32.524s] Masking reference... [32.233s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.007s] Building reference histograms... [32.087s] Allocating buffers... [0s] Processing query block 1, reference block 5/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.16s] Building query seed array... [1.891s] Computing hash join... [6.548s] Masking low complexity seeds... [0.344s] Searching alignments... [71.936s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.069s] Building query seed array... [2.665s] Computing hash join... [5.865s] Masking low complexity seeds... [0.289s] Searching alignments... [48.765s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.925s] Building query seed array... [2.523s] Computing hash join... [5.867s] Masking low complexity seeds... [0.228s] Searching alignments... [40.293s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.823s] Building query seed array... [2.091s] Computing hash join... [5.872s] Masking low complexity seeds... [0.221s] Searching alignments... [35.373s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.614s] Building query seed array... [1.835s] Computing hash join... [5.593s] Masking low complexity seeds... [0.198s] Searching alignments... [35.596s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 2/2, index chunk 2/4. Building reference seed array... [13.169s] Building query seed array... [2.165s] Computing hash join... [5.693s] Masking low complexity seeds... [0.194s] Searching alignments... [28.096s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.26s] Building query seed array... [2.202s] Computing hash join... [5.819s] Masking low complexity seeds... [0.215s] Searching alignments... [32.185s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.511s] Building query seed array... [1.865s] Computing hash join... [5.871s] Masking low complexity seeds... [0.206s] Searching alignments... [27.64s] Deallocating memory... [0s] Deallocating buffers... [1.767s] Clearing query masking... [1.421s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [12.216s] Sorting trace points... [2.124s] Computing alignments... [56.533s] Deallocating buffers... [0.029s] Loading trace points... [0.101s] Sorting trace points... [2.205s] Computing alignments... [56.836s] Deallocating buffers... [0.023s] Loading trace points... [0.132s] Sorting trace points... [2.33s] Computing alignments... [56.188s] Deallocating buffers... [0.169s] Loading trace points... [0.064s] Sorting trace points... [2.584s] Computing alignments... [56.188s] Deallocating buffers... [0.492s] Loading trace points... [0.091s] Sorting trace points... [1.116s] Computing alignments... [28.953s] Deallocating buffers... [0.015s] Loading trace points... [0.131s] Sorting trace points... [1.127s] Computing alignments... [29.764s] Deallocating buffers... [0.013s] Loading trace points... [0.08s] Sorting trace points... [1.117s] Computing alignments... [29.845s] Deallocating buffers... [0.016s] Loading trace points... [0.058s] Sorting trace points... [1.115s] Computing alignments... [29.604s] Deallocating buffers... [0.013s] Loading trace points... [0.089s] Sorting trace points... [1.248s] Computing alignments... [29.883s] Deallocating buffers... [0.144s] Loading trace points... [0.108s] Sorting trace points... [1.161s] Computing alignments... [29.835s] Deallocating buffers... [0.015s] Loading trace points... [0.064s] Sorting trace points... [0.847s] Computing alignments... [29.741s] Deallocating buffers... [0.014s] Loading trace points... [0s] Sorting trace points... [1.038s] Computing alignments... [29.482s] Deallocating buffers... [0.013s] Loading trace points... [0s] [495.153s] Deallocating reference... [0.345s] Loading reference sequences... [29.859s] Masking reference... [32.108s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.008s] Building reference histograms... [32.36s] Allocating buffers... [0s] Processing query block 1, reference block 6/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.219s] Building query seed array... [1.916s] Computing hash join... [6.777s] Masking low complexity seeds... [0.212s] Searching alignments... [69.696s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 1/2, index chunk 2/4. Building reference seed array... [13.058s] Building query seed array... [2.817s] Computing hash join... [6.76s] Masking low complexity seeds... [0.208s] Searching alignments... [46.463s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 1/2, index chunk 3/4. Building reference seed array... [14.034s] Building query seed array... [2.604s] Computing hash join... [6.376s] Masking low complexity seeds... [0.213s] Searching alignments... [38.705s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.233s] Building query seed array... [2.113s] Computing hash join... [6.331s] Masking low complexity seeds... [0.236s] Searching alignments... [34.285s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.166s] Building query seed array... [1.849s] Computing hash join... [6.176s] Masking low complexity seeds... [0.213s] Searching alignments... [34.926s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.595s] Building query seed array... [2.128s] Computing hash join... [6.176s] Masking low complexity seeds... [0.202s] Searching alignments... [29.299s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.888s] Building query seed array... [2.323s] Computing hash join... [6.802s] Masking low complexity seeds... [0.209s] Searching alignments... [31.618s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.262s] Building query seed array... [1.853s] Computing hash join... [6.435s] Masking low complexity seeds... [0.26s] Searching alignments... [27.304s] Deallocating memory... [0s] Deallocating buffers... [1.523s] Clearing query masking... [1.446s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [11.862s] Sorting trace points... [2.216s] Computing alignments... [55.86s] Deallocating buffers... [0.027s] Loading trace points... [0.099s] Sorting trace points... [1.85s] Computing alignments... [56.358s] Deallocating buffers... [0.174s] Loading trace points... [0.134s] Sorting trace points... [2.377s] Computing alignments... [55.548s] Deallocating buffers... [0.332s] Loading trace points... [0.064s] Sorting trace points... [2.224s] Computing alignments... [55.43s] Deallocating buffers... [0.028s] Loading trace points... [0.066s] Sorting trace points... [1.09s] Computing alignments... [28.62s] Deallocating buffers... [0.016s] Loading trace points... [0.07s] Sorting trace points... [1.116s] Computing alignments... [29.437s] Deallocating buffers... [0.015s] Loading trace points... [0.047s] Sorting trace points... [1.007s] Computing alignments... [29.523s] Deallocating buffers... [0.084s] Loading trace points... [0.096s] Sorting trace points... [0.921s] Computing alignments... [29.376s] Deallocating buffers... [0.013s] Loading trace points... [0.055s] Sorting trace points... [1.117s] Computing alignments... [29.571s] Deallocating buffers... [0.013s] Loading trace points... [0.065s] Sorting trace points... [1.156s] Computing alignments... [29.613s] Deallocating buffers... [0.137s] Loading trace points... [0.059s] Sorting trace points... [1.135s] Computing alignments... [29.606s] Deallocating buffers... [0.016s] Loading trace points... [0s] Sorting trace points... [1.091s] Computing alignments... [29.359s] Deallocating buffers... [0.012s] Loading trace points... [0s] [489.363s] Deallocating reference... [0.071s] Loading reference sequences... [29.337s] Masking reference... [30.946s] Initializing dictionary... [0.077s] Initializing temporary storage... [0.007s] Building reference histograms... [32.574s] Allocating buffers... [0s] Processing query block 1, reference block 7/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.092s] Building query seed array... [1.877s] Computing hash join... [6.725s] Masking low complexity seeds... [0.217s] Searching alignments... [70.547s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.922s] Building query seed array... [2.667s] Computing hash join... [6.778s] Masking low complexity seeds... [0.222s] Searching alignments... [49.122s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.641s] Building query seed array... [2.467s] Computing hash join... [6.608s] Masking low complexity seeds... [0.215s] Searching alignments... [41.878s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.639s] Building query seed array... [2.062s] Computing hash join... [6.736s] Masking low complexity seeds... [0.214s] Searching alignments... [37.011s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.134s] Building query seed array... [1.93s] Computing hash join... [6.726s] Masking low complexity seeds... [0.253s] Searching alignments... [36.119s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.568s] Building query seed array... [2.065s] Computing hash join... [6.775s] Masking low complexity seeds... [0.202s] Searching alignments... [28.441s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.136s] Building query seed array... [2.275s] Computing hash join... [6.559s] Masking low complexity seeds... [0.213s] Searching alignments... [35.286s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.524s] Building query seed array... [1.898s] Computing hash join... [6.703s] Masking low complexity seeds... [0.227s] Searching alignments... [28.56s] Deallocating memory... [0s] Deallocating buffers... [1.632s] Clearing query masking... [1.454s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [12.124s] Sorting trace points... [2.425s] Computing alignments... [56.183s] Deallocating buffers... [0.028s] Loading trace points... [0.103s] Sorting trace points... [1.895s] Computing alignments... [56.746s] Deallocating buffers... [0.174s] Loading trace points... [0.148s] Sorting trace points... [2.247s] Computing alignments... [55.815s] Deallocating buffers... [0.023s] Loading trace points... [0.078s] Sorting trace points... [2.102s] Computing alignments... [55.872s] Deallocating buffers... [0.093s] Loading trace points... [0.063s] Sorting trace points... [1.027s] Computing alignments... [28.829s] Deallocating buffers... [0.013s] Loading trace points... [0.069s] Sorting trace points... [0.805s] Computing alignments... [29.488s] Deallocating buffers... [0.014s] Loading trace points... [0.055s] Sorting trace points... [1.179s] Computing alignments... [29.56s] Deallocating buffers... [0.123s] Loading trace points... [0.104s] Sorting trace points... [1.267s] Computing alignments... [29.346s] Deallocating buffers... [0.158s] Loading trace points... [0.084s] Sorting trace points... [1.137s] Computing alignments... [29.729s] Deallocating buffers... [0.013s] Loading trace points... [0.075s] Sorting trace points... [1.119s] Computing alignments... [29.526s] Deallocating buffers... [0.016s] Loading trace points... [0.097s] Sorting trace points... [1.143s] Computing alignments... [29.606s] Deallocating buffers... [0.013s] Loading trace points... [0s] Sorting trace points... [1.122s] Computing alignments... [29.333s] Deallocating buffers... [0.016s] Loading trace points... [0s] [491.47s] Deallocating reference... [0.057s] Loading reference sequences... [29.669s] Masking reference... [32.203s] Initializing dictionary... [0.079s] Initializing temporary storage... [0.007s] Building reference histograms... [32.13s] Allocating buffers... [0s] Processing query block 1, reference block 8/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.215s] Building query seed array... [1.872s] Computing hash join... [6.752s] Masking low complexity seeds... [0.212s] Searching alignments... [69.223s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.66s] Building query seed array... [2.755s] Computing hash join... [6.494s] Masking low complexity seeds... [0.213s] Searching alignments... [49.272s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 1/2, index chunk 3/4. Building reference seed array... [14.113s] Building query seed array... [2.343s] Computing hash join... [6.475s] Masking low complexity seeds... [0.216s] Searching alignments... [40.87s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.288s] Building query seed array... [2.06s] Computing hash join... [6.734s] Masking low complexity seeds... [0.208s] Searching alignments... [37.381s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.274s] Building query seed array... [1.974s] Computing hash join... [6.594s] Masking low complexity seeds... [0.199s] Searching alignments... [36.285s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.823s] Building query seed array... [2.119s] Computing hash join... [6.552s] Masking low complexity seeds... [0.22s] Searching alignments... [28.72s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.422s] Building query seed array... [2.29s] Computing hash join... [6.584s] Masking low complexity seeds... [0.215s] Searching alignments... [34.216s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 2/2, index chunk 4/4. Building reference seed array... [9.951s] Building query seed array... [1.822s] Computing hash join... [6.546s] Masking low complexity seeds... [0.229s] Searching alignments... [28.947s] Deallocating memory... [0s] Deallocating buffers... [1.695s] Clearing query masking... [1.445s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [12.101s] Sorting trace points... [2.287s] Computing alignments... [56.118s] Deallocating buffers... [0.025s] Loading trace points... [0.119s] Sorting trace points... [2.043s] Computing alignments... [56.426s] Deallocating buffers... [0.145s] Loading trace points... [0.06s] Sorting trace points... [2.485s] Computing alignments... [55.8s] Deallocating buffers... [0.462s] Loading trace points... [0.07s] Sorting trace points... [2.531s] Computing alignments... [55.96s] Deallocating buffers... [0.347s] Loading trace points... [0.071s] Sorting trace points... [1.112s] Computing alignments... [28.832s] Deallocating buffers... [0.012s] Loading trace points... [0.072s] Sorting trace points... [1.042s] Computing alignments... [29.653s] Deallocating buffers... [0.015s] Loading trace points... [0.056s] Sorting trace points... [1.132s] Computing alignments... [29.725s] Deallocating buffers... [0.056s] Loading trace points... [0.072s] Sorting trace points... [1.091s] Computing alignments... [29.479s] Deallocating buffers... [0.015s] Loading trace points... [0.077s] Sorting trace points... [1.157s] Computing alignments... [29.802s] Deallocating buffers... [0.013s] Loading trace points... [0.086s] Sorting trace points... [1.04s] Computing alignments... [29.753s] Deallocating buffers... [0.013s] Loading trace points... [0.081s] Sorting trace points... [0.989s] Computing alignments... [29.681s] Deallocating buffers... [0.013s] Loading trace points... [0s] Sorting trace points... [1.167s] Computing alignments... [29.465s] Deallocating buffers... [0.156s] Loading trace points... [0s] [493.567s] Deallocating reference... [0.062s] Loading reference sequences... [30.806s] Masking reference... [31.813s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.008s] Building reference histograms... [32.385s] Allocating buffers... [0s] Processing query block 1, reference block 9/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.052s] Building query seed array... [1.831s] Computing hash join... [6.8s] Masking low complexity seeds... [0.211s] Searching alignments... [70.342s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.51s] Building query seed array... [2.728s] Computing hash join... [6.759s] Masking low complexity seeds... [0.218s] Searching alignments... [48.518s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.933s] Building query seed array... [2.471s] Computing hash join... [6.48s] Masking low complexity seeds... [0.224s] Searching alignments... [41.485s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.436s] Building query seed array... [2.195s] Computing hash join... [6.578s] Masking low complexity seeds... [0.216s] Searching alignments... [36.061s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.656s] Building query seed array... [1.869s] Computing hash join... [6.314s] Masking low complexity seeds... [0.209s] Searching alignments... [37.241s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.723s] Building query seed array... [2.174s] Computing hash join... [6.489s] Masking low complexity seeds... [0.207s] Searching alignments... [30.177s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 2/2, index chunk 3/4. Building reference seed array... [12.867s] Building query seed array... [2.332s] Computing hash join... [6.153s] Masking low complexity seeds... [0.212s] Searching alignments... [32.253s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.312s] Building query seed array... [1.861s] Computing hash join... [6.272s] Masking low complexity seeds... [0.195s] Searching alignments... [27.722s] Deallocating memory... [0s] Deallocating buffers... [1.782s] Clearing query masking... [1.463s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [11.689s] Sorting trace points... [2.391s] Computing alignments... [56.071s] Deallocating buffers... [0.024s] Loading trace points... [0.17s] Sorting trace points... [2.076s] Computing alignments... [56.275s] Deallocating buffers... [0.029s] Loading trace points... [0.207s] Sorting trace points... [2.229s] Computing alignments... [55.645s] Deallocating buffers... [0.101s] Loading trace points... [0.081s] Sorting trace points... [2.177s] Computing alignments... [55.683s] Deallocating buffers... [0.06s] Loading trace points... [0.074s] Sorting trace points... [1.066s] Computing alignments... [28.861s] Deallocating buffers... [0.013s] Loading trace points... [0.077s] Sorting trace points... [1.2s] Computing alignments... [29.594s] Deallocating buffers... [0.196s] Loading trace points... [0.399s] Sorting trace points... [1.213s] Computing alignments... [29.624s] Deallocating buffers... [0.015s] Loading trace points... [0.082s] Sorting trace points... [1.107s] Computing alignments... [29.428s] Deallocating buffers... [0.012s] Loading trace points... [0.065s] Sorting trace points... [0.957s] Computing alignments... [29.802s] Deallocating buffers... [0.013s] Loading trace points... [0.084s] Sorting trace points... [1.189s] Computing alignments... [29.72s] Deallocating buffers... [0.042s] Loading trace points... [0.086s] Sorting trace points... [0.983s] Computing alignments... [29.648s] Deallocating buffers... [0.015s] Loading trace points... [0s] Sorting trace points... [1.142s] Computing alignments... [29.512s] Deallocating buffers... [0.016s] Loading trace points... [0s] [492.031s] Deallocating reference... [0.062s] Loading reference sequences... [29.108s] Masking reference... [32.067s] Initializing dictionary... [0.079s] Initializing temporary storage... [0.006s] Building reference histograms... [32.033s] Allocating buffers... [0s] Processing query block 1, reference block 10/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.338s] Building query seed array... [1.887s] Computing hash join... [6.824s] Masking low complexity seeds... [0.207s] Searching alignments... [70.975s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.741s] Building query seed array... [2.701s] Computing hash join... [6.78s] Masking low complexity seeds... [0.208s] Searching alignments... [49.608s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.59s] Building query seed array... [2.498s] Computing hash join... [6.387s] Masking low complexity seeds... [0.216s] Searching alignments... [42.045s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.207s] Building query seed array... [2.056s] Computing hash join... [6.725s] Masking low complexity seeds... [0.21s] Searching alignments... [35.336s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.591s] Building query seed array... [1.858s] Computing hash join... [6.586s] Masking low complexity seeds... [0.197s] Searching alignments... [36.073s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 2/2, index chunk 2/4. Building reference seed array... [13.11s] Building query seed array... [2.196s] Computing hash join... [6.698s] Masking low complexity seeds... [0.246s] Searching alignments... [28.519s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.417s] Building query seed array... [2.278s] Computing hash join... [6.718s] Masking low complexity seeds... [0.2s] Searching alignments... [33.655s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.296s] Building query seed array... [1.794s] Computing hash join... [6.723s] Masking low complexity seeds... [0.204s] Searching alignments... [28.158s] Deallocating memory... [0s] Deallocating buffers... [1.761s] Clearing query masking... [1.483s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [11.848s] Sorting trace points... [2.097s] Computing alignments... [56.244s] Deallocating buffers... [0.028s] Loading trace points... [0.12s] Sorting trace points... [2.373s] Computing alignments... [56.607s] Deallocating buffers... [0.213s] Loading trace points... [0.2s] Sorting trace points... [1.931s] Computing alignments... [55.894s] Deallocating buffers... [0.179s] Loading trace points... [0.064s] Sorting trace points... [2.211s] Computing alignments... [55.793s] Deallocating buffers... [0.024s] Loading trace points... [0.074s] Sorting trace points... [1.073s] Computing alignments... [28.685s] Deallocating buffers... [0.015s] Loading trace points... [0.087s] Sorting trace points... [1.321s] Computing alignments... [29.47s] Deallocating buffers... [0.266s] Loading trace points... [0.097s] Sorting trace points... [1.191s] Computing alignments... [29.522s] Deallocating buffers... [0.016s] Loading trace points... [0.086s] Sorting trace points... [1.121s] Computing alignments... [29.393s] Deallocating buffers... [0.013s] Loading trace points... [0.073s] Sorting trace points... [1.109s] Computing alignments... [29.768s] Deallocating buffers... [0.016s] Loading trace points... [0.078s] Sorting trace points... [1.087s] Computing alignments... [29.638s] Deallocating buffers... [0.016s] Loading trace points... [0.063s] Sorting trace points... [1.157s] Computing alignments... [29.491s] Deallocating buffers... [0.013s] Loading trace points... [0s] Sorting trace points... [1.008s] Computing alignments... [29.399s] Deallocating buffers... [0.139s] Loading trace points... [0s] [491.911s] Deallocating reference... [0.064s] Loading reference sequences... [31.609s] Masking reference... [31.151s] Initializing dictionary... [0.077s] Initializing temporary storage... [0.007s] Building reference histograms... [32.896s] Allocating buffers... [0s] Processing query block 1, reference block 11/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.508s] Building query seed array... [1.836s] Computing hash join... [6.913s] Masking low complexity seeds... [0.208s] Searching alignments... [68.393s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.848s] Building query seed array... [2.809s] Computing hash join... [6.656s] Masking low complexity seeds... [0.216s] Searching alignments... [46.78s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.672s] Building query seed array... [2.486s] Computing hash join... [6.158s] Masking low complexity seeds... [0.221s] Searching alignments... [40.41s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.969s] Building query seed array... [2.218s] Computing hash join... [6.324s] Masking low complexity seeds... [0.219s] Searching alignments... [35.912s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.505s] Building query seed array... [1.818s] Computing hash join... [6.17s] Masking low complexity seeds... [0.211s] Searching alignments... [35.817s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.864s] Building query seed array... [2.258s] Computing hash join... [6.003s] Masking low complexity seeds... [0.213s] Searching alignments... [28.22s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.467s] Building query seed array... [2.224s] Computing hash join... [6.657s] Masking low complexity seeds... [0.202s] Searching alignments... [32.357s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.423s] Building query seed array... [1.941s] Computing hash join... [6.481s] Masking low complexity seeds... [0.258s] Searching alignments... [27.626s] Deallocating memory... [0s] Deallocating buffers... [1.856s] Clearing query masking... [1.449s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [11.592s] Sorting trace points... [2.344s] Computing alignments... [56.011s] Deallocating buffers... [0.028s] Loading trace points... [0.156s] Sorting trace points... [1.801s] Computing alignments... [56.369s] Deallocating buffers... [0.027s] Loading trace points... [0.172s] Sorting trace points... [2.37s] Computing alignments... [55.835s] Deallocating buffers... [0.303s] Loading trace points... [0.998s] Sorting trace points... [2.57s] Computing alignments... [55.707s] Deallocating buffers... [0.274s] Loading trace points... [0.27s] Sorting trace points... [1.25s] Computing alignments... [28.729s] Deallocating buffers... [0.237s] Loading trace points... [0.069s] Sorting trace points... [1.183s] Computing alignments... [29.321s] Deallocating buffers... [0.016s] Loading trace points... [0.386s] Sorting trace points... [1.22s] Computing alignments... [29.494s] Deallocating buffers... [0.013s] Loading trace points... [0.07s] Sorting trace points... [1.115s] Computing alignments... [29.238s] Deallocating buffers... [0.016s] Loading trace points... [1.959s] Sorting trace points... [1.22s] Computing alignments... [29.74s] Deallocating buffers... [0.013s] Loading trace points... [0.055s] Sorting trace points... [1.209s] Computing alignments... [29.626s] Deallocating buffers... [0.129s] Loading trace points... [0.092s] Sorting trace points... [1.323s] Computing alignments... [29.583s] Deallocating buffers... [0.224s] Loading trace points... [0s] Sorting trace points... [1.156s] Computing alignments... [29.436s] Deallocating buffers... [0.016s] Loading trace points... [0s] [495.218s] Deallocating reference... [0.06s] Loading reference sequences... [30.731s] Masking reference... [31.05s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.007s] Building reference histograms... [32.17s] Allocating buffers... [0s] Processing query block 1, reference block 12/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.094s] Building query seed array... [1.919s] Computing hash join... [6.992s] Masking low complexity seeds... [0.21s] Searching alignments... [70.321s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.856s] Building query seed array... [2.774s] Computing hash join... [6.847s] Masking low complexity seeds... [0.226s] Searching alignments... [48.611s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.713s] Building query seed array... [2.562s] Computing hash join... [6.28s] Masking low complexity seeds... [0.218s] Searching alignments... [41.752s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.658s] Building query seed array... [2.071s] Computing hash join... [6.798s] Masking low complexity seeds... [0.241s] Searching alignments... [37.207s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.43s] Building query seed array... [1.873s] Computing hash join... [6.507s] Masking low complexity seeds... [0.219s] Searching alignments... [36.96s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.958s] Building query seed array... [2.231s] Computing hash join... [6.639s] Masking low complexity seeds... [0.211s] Searching alignments... [28.548s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.794s] Building query seed array... [2.317s] Computing hash join... [6.639s] Masking low complexity seeds... [0.213s] Searching alignments... [32.717s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.378s] Building query seed array... [1.818s] Computing hash join... [6.274s] Masking low complexity seeds... [0.219s] Searching alignments... [28.073s] Deallocating memory... [0s] Deallocating buffers... [1.853s] Clearing query masking... [1.472s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [11.3s] Sorting trace points... [2.411s] Computing alignments... [56.26s] Deallocating buffers... [0.023s] Loading trace points... [0.155s] Sorting trace points... [1.718s] Computing alignments... [56.55s] Deallocating buffers... [0.026s] Loading trace points... [0.169s] Sorting trace points... [2.22s] Computing alignments... [55.885s] Deallocating buffers... [0.024s] Loading trace points... [0.08s] Sorting trace points... [1.609s] Computing alignments... [56.112s] Deallocating buffers... [0.025s] Loading trace points... [0.068s] Sorting trace points... [1.329s] Computing alignments... [28.968s] Deallocating buffers... [0.281s] Loading trace points... [0.08s] Sorting trace points... [1.27s] Computing alignments... [29.586s] Deallocating buffers... [0.074s] Loading trace points... [0.066s] Sorting trace points... [1.187s] Computing alignments... [29.73s] Deallocating buffers... [0.227s] Loading trace points... [0.097s] Sorting trace points... [1.259s] Computing alignments... [29.507s] Deallocating buffers... [0.102s] Loading trace points... [0.108s] Sorting trace points... [1.141s] Computing alignments... [29.886s] Deallocating buffers... [0.134s] Loading trace points... [0.105s] Sorting trace points... [1.284s] Computing alignments... [29.766s] Deallocating buffers... [0.183s] Loading trace points... [0.068s] Sorting trace points... [1.233s] Computing alignments... [29.767s] Deallocating buffers... [0.14s] Loading trace points... [0s] Sorting trace points... [1.202s] Computing alignments... [29.425s] Deallocating buffers... [0.013s] Loading trace points... [0s] [493.189s] Deallocating reference... [0.069s] Loading reference sequences... [29.948s] Masking reference... [30.878s] Initializing dictionary... [0.077s] Initializing temporary storage... [0.007s] Building reference histograms... [32.232s] Allocating buffers... [0s] Processing query block 1, reference block 13/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.176s] Building query seed array... [1.869s] Computing hash join... [6.883s] Masking low complexity seeds... [0.212s] Searching alignments... [71.757s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.946s] Building query seed array... [2.682s] Computing hash join... [6.695s] Masking low complexity seeds... [0.211s] Searching alignments... [48.431s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 1/2, index chunk 3/4. Building reference seed array... [14.266s] Building query seed array... [2.439s] Computing hash join... [6.563s] Masking low complexity seeds... [0.213s] Searching alignments... [41.46s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.486s] Building query seed array... [2.029s] Computing hash join... [6.85s] Masking low complexity seeds... [0.204s] Searching alignments... [36.28s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.435s] Building query seed array... [1.944s] Computing hash join... [6.569s] Masking low complexity seeds... [0.192s] Searching alignments... [37.459s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.481s] Building query seed array... [2.148s] Computing hash join... [6.76s] Masking low complexity seeds... [0.243s] Searching alignments... [28.842s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.209s] Building query seed array... [2.248s] Computing hash join... [6.692s] Masking low complexity seeds... [0.201s] Searching alignments... [33.026s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.397s] Building query seed array... [1.847s] Computing hash join... [6.638s] Masking low complexity seeds... [0.198s] Searching alignments... [28.731s] Deallocating memory... [0s] Deallocating buffers... [1.921s] Clearing query masking... [1.487s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [11.509s] Sorting trace points... [2.343s] Computing alignments... [56.015s] Deallocating buffers... [0.023s] Loading trace points... [0.271s] Sorting trace points... [2.28s] Computing alignments... [56.654s] Deallocating buffers... [0.196s] Loading trace points... [0.222s] Sorting trace points... [2.172s] Computing alignments... [55.886s] Deallocating buffers... [0.204s] Loading trace points... [0.124s] Sorting trace points... [2.274s] Computing alignments... [55.764s] Deallocating buffers... [0.029s] Loading trace points... [0.079s] Sorting trace points... [1.022s] Computing alignments... [28.723s] Deallocating buffers... [0.015s] Loading trace points... [0.071s] Sorting trace points... [1.115s] Computing alignments... [29.573s] Deallocating buffers... [0.013s] Loading trace points... [0.078s] Sorting trace points... [1.183s] Computing alignments... [29.631s] Deallocating buffers... [0.036s] Loading trace points... [0.068s] Sorting trace points... [1.239s] Computing alignments... [29.631s] Deallocating buffers... [0.255s] Loading trace points... [0.064s] Sorting trace points... [1.177s] Computing alignments... [29.864s] Deallocating buffers... [0.015s] Loading trace points... [0.06s] Sorting trace points... [1.141s] Computing alignments... [29.658s] Deallocating buffers... [0.016s] Loading trace points... [0.541s] Sorting trace points... [1.226s] Computing alignments... [29.678s] Deallocating buffers... [0.016s] Loading trace points... [0s] Sorting trace points... [1.037s] Computing alignments... [29.566s] Deallocating buffers... [0.013s] Loading trace points... [0s] [493.775s] Deallocating reference... [0.059s] Loading reference sequences... [27.492s] Masking reference... [25.025s] Initializing dictionary... [0.063s] Initializing temporary storage... [0.007s] Building reference histograms... [26.142s] Allocating buffers... [0s] Processing query block 1, reference block 14/14, shape 1/2, index chunk 1/4. Building reference seed array... [8.504s] Building query seed array... [1.94s] Computing hash join... [5.009s] Masking low complexity seeds... [0.2s] Searching alignments... [57.237s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 1/2, index chunk 2/4. Building reference seed array... [10.771s] Building query seed array... [2.702s] Computing hash join... [4.885s] Masking low complexity seeds... [0.231s] Searching alignments... [39.701s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 1/2, index chunk 3/4. Building reference seed array... [11.056s] Building query seed array... [2.38s] Computing hash join... [4.757s] Masking low complexity seeds... [0.23s] Searching alignments... [33.244s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 1/2, index chunk 4/4. Building reference seed array... [8.384s] Building query seed array... [2.072s] Computing hash join... [4.949s] Masking low complexity seeds... [0.223s] Searching alignments... [28.794s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 2/2, index chunk 1/4. Building reference seed array... [8.648s] Building query seed array... [1.864s] Computing hash join... [4.464s] Masking low complexity seeds... [0.179s] Searching alignments... [29.019s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 2/2, index chunk 2/4. Building reference seed array... [9.983s] Building query seed array... [2.147s] Computing hash join... [4.785s] Masking low complexity seeds... [0.252s] Searching alignments... [23.702s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 2/2, index chunk 3/4. Building reference seed array... [11.136s] Building query seed array... [2.2s] Computing hash join... [4.715s] Masking low complexity seeds... [0.185s] Searching alignments... [26.123s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 2/2, index chunk 4/4. Building reference seed array... [8.353s] Building query seed array... [1.957s] Computing hash join... [4.415s] Masking low complexity seeds... [0.202s] Searching alignments... [22.854s] Deallocating memory... [0s] Deallocating buffers... [1.298s] Clearing query masking... [1.396s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [10.031s] Sorting trace points... [1.871s] Computing alignments... [44.599s] Deallocating buffers... [0.019s] Loading trace points... [0.217s] Sorting trace points... [1.874s] Computing alignments... [45.021s] Deallocating buffers... [0.024s] Loading trace points... [0.066s] Sorting trace points... [2.083s] Computing alignments... [44.566s] Deallocating buffers... [0.387s] Loading trace points... [0.16s] Sorting trace points... [1.481s] Computing alignments... [44.523s] Deallocating buffers... [0.022s] Loading trace points... [0.1s] Sorting trace points... [1.802s] Computing alignments... [46.12s] Deallocating buffers... [0.123s] Loading trace points... [0.114s] Sorting trace points... [1.565s] Computing alignments... [46.792s] Deallocating buffers... [0.024s] Loading trace points... [0.137s] Sorting trace points... [1.448s] Computing alignments... [46.967s] Deallocating buffers... [0.023s] Loading trace points... [0s] Sorting trace points... [1.66s] Computing alignments... [46.36s] Deallocating buffers... [0.024s] Loading trace points... [0s] [390.307s] Deallocating reference... [0.058s] Loading reference sequences... [0.076s] Deallocating buffers... [0s] Joining output blocks... Joining output blocks... [1925.93s] [1925.93s] Deallocating queries... [0.073s] Loading query sequences... [0s] Closing the input file... [0s] Closing the output file... Loading dictionary... [3.48s] [4.491s] Closing the database... [0s] Cleaning up... [0s] Total time = 16912s Reported 2176898196 pairwise alignments, 2176898196 HSPs. 11698311 queries aligned. DIAMOND BLASTx on /gscratch/srlab/sam/data/P_verrucosa/RNAseq/E4_R1.fastp-trim.20230215.fq.gz complete: E4_R1.blastx.meganized.daa Now MEGANizing E4_R1.blastx.meganized.daa Version MEGAN Community Edition (version 6.22.0, built 19 Feb 2022) Author(s) Daniel H. Huson Copyright (C) 2022 Daniel H. Huson. This program comes with ABSOLUTELY NO WARRANTY. Java version: 17.0.2 Functional classifications to use: EC, EGGNOG, GTDB, INTERPRO2GO, SEED Loading ncbi.map: 2,396,736 Loading ncbi.tre: 2,396,740 Loading ec.map: 8,200 Loading ec.tre: 8,204 Loading eggnog.map: 30,875 Loading eggnog.tre: 30,986 Loading gtdb.map: 240,103 Loading gtdb.tre: 240,107 Loading interpro2go.map: 14,242 Loading interpro2go.tre: 28,907 Loading seed.map: 961 Loading seed.tre: 962 Meganizing: E4_R1.blastx.meganized.daa Meganizing init Annotating DAA file using FAST mode (accession database and first accession per line) Annotating references 10% 20% 30% 40% 50% 60% 70% 100% (508.5s) Writing 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (1.3s) Binning reads Initializing... Initializing binning... Using 'Naive LCA' algorithm for binning: Taxonomy Using Best-Hit algorithm for binning: SEED Using Best-Hit algorithm for binning: EGGNOG Using 'Naive LCA' algorithm for binning: GTDB Using Best-Hit algorithm for binning: EC Using Best-Hit algorithm for binning: INTERPRO2GO Binning reads... Binning reads Analyzing alignments 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (4,175.8s) Total reads: 11,698,311 With hits: 11,698,311 Alignments: 2,172,244,919 Assig. Taxonomy: 10,684,694 Assig. SEED: 103,164 Assig. EGGNOG: 49,817 Assig. GTDB: 362,772 Assig. EC: 1,845,320 Assig. INTERPRO2GO: 1,135,915 MinSupport set to: 5849 Binning reads Applying min-support & disabled filter to Taxonomy... 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (0.4s) Min-supp. changes: 3,842 Binning reads Applying min-support & disabled filter to GTDB... 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (9.0s) Min-supp. changes: 2,958 Binning reads Writing classification tables 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (27.0s) Binning reads Syncing 100% (0.3s) Class. Taxonomy: 69 Class. SEED: 497 Class. EGGNOG: 1,761 Class. GTDB: 29 Class. EC: 2,345 Class. INTERPRO2GO: 7,670 Total time: 4,731s Peak memory: 34.5 of 195.3G MEGANization of E4_R1.blastx.meganized.daa completed. Generating MD5 checksum for /gscratch/srlab/sam/data/P_verrucosa/RNAseq/E4_R2.fastp-trim.20230215.fq.gz... 50d4dd538d9b397d7927e1c332535f8e /gscratch/srlab/sam/data/P_verrucosa/RNAseq/E4_R2.fastp-trim.20230215.fq.gz Running DIAMOND BLASTx on /gscratch/srlab/sam/data/P_verrucosa/RNAseq/E4_R2.fastp-trim.20230215.fq.gz. diamond v2.1.1.155 (C) Max Planck Society for the Advancement of Science Documentation, support and updates available at http://www.diamondsearch.org Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021) #CPU threads: 40 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: Percentage range of top alignment score to report hits: 5 Opening the database... [0.379s] Database: /gscratch/srlab/blastdbs/20230215-ncbi-nr/20230215-ncbi-nr.dmnd (type: Diamond database, sequences: 526308523, letters: 207134680681) Block size = 15000000000 Opening the input file... [0.721s] Opening the output file... [0s] Loading query sequences... [67.955s] Masking queries... [17.115s] Algorithm: Double-indexed Building query histograms... [20.252s] Loading reference sequences... [29.803s] Masking reference... [30.856s] Initializing dictionary... [0.079s] Initializing temporary storage... [0.008s] Building reference histograms... [32.932s] Allocating buffers... [0.001s] Processing query block 1, reference block 1/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.612s] Building query seed array... [1.896s] Computing hash join... [6.647s] Masking low complexity seeds... [0.268s] Searching alignments... [72.846s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.646s] Building query seed array... [2.55s] Computing hash join... [6.536s] Masking low complexity seeds... [0.256s] Searching alignments... [47.795s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.657s] Building query seed array... [2.472s] Computing hash join... [6.429s] Masking low complexity seeds... [0.262s] Searching alignments... [40.949s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.351s] Building query seed array... [2.069s] Computing hash join... [6.552s] Masking low complexity seeds... [0.268s] Searching alignments... [35.519s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.597s] Building query seed array... [1.885s] Computing hash join... [6.273s] Masking low complexity seeds... [0.242s] Searching alignments... [46.369s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.608s] Building query seed array... [2.042s] Computing hash join... [6.69s] Masking low complexity seeds... [0.264s] Searching alignments... [29.54s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.494s] Building query seed array... [2.213s] Computing hash join... [6.417s] Masking low complexity seeds... [0.24s] Searching alignments... [36.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.377s] Building query seed array... [1.8s] Computing hash join... [6.363s] Masking low complexity seeds... [0.233s] Searching alignments... [28.341s] Deallocating memory... [0s] Deallocating buffers... [1.334s] Clearing query masking... [1.497s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [11.543s] Sorting trace points... [2.36s] Computing alignments... [56.33s] Deallocating buffers... [0.025s] Loading trace points... [0.126s] Sorting trace points... [2.152s] Computing alignments... [56.399s] Deallocating buffers... [0.029s] Loading trace points... [0.124s] Sorting trace points... [2.431s] Computing alignments... [56.036s] Deallocating buffers... [0.303s] Loading trace points... [0.068s] Sorting trace points... [2.194s] Computing alignments... [56.003s] Deallocating buffers... [0.023s] Loading trace points... [0.06s] Sorting trace points... [1.14s] Computing alignments... [29.214s] Deallocating buffers... [0.015s] Loading trace points... [0.047s] Sorting trace points... [0.961s] Computing alignments... [30.482s] Deallocating buffers... [0.015s] Loading trace points... [0.077s] Sorting trace points... [1.184s] Computing alignments... [30.665s] Deallocating buffers... [0.013s] Loading trace points... [0.044s] Sorting trace points... [1.116s] Computing alignments... [30.296s] Deallocating buffers... [0.013s] Loading trace points... [0.045s] Sorting trace points... [1.158s] Computing alignments... [30.585s] Deallocating buffers... [0.013s] Loading trace points... [0.058s] Sorting trace points... [1.142s] Computing alignments... [30.745s] Deallocating buffers... [0.016s] Loading trace points... [0.075s] Sorting trace points... [1.135s] Computing alignments... [30.555s] Deallocating buffers... [0.016s] Loading trace points... [0s] Sorting trace points... [0.955s] Computing alignments... [30.418s] Deallocating buffers... [0.014s] Loading trace points... [0s] [498.539s] Deallocating reference... [0.057s] Loading reference sequences... [29.995s] Masking reference... [32.261s] Initializing dictionary... [0.077s] Initializing temporary storage... [0.008s] Building reference histograms... [32.401s] Allocating buffers... [0.001s] Processing query block 1, reference block 2/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.158s] Building query seed array... [1.822s] Computing hash join... [6.155s] Masking low complexity seeds... [0.384s] Searching alignments... [72.114s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 1/2, index chunk 2/4. Building reference seed array... [13.64s] Building query seed array... [2.628s] Computing hash join... [6.34s] Masking low complexity seeds... [0.258s] Searching alignments... [47.527s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.828s] Building query seed array... [2.45s] Computing hash join... [6.029s] Masking low complexity seeds... [0.264s] Searching alignments... [41.922s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.215s] Building query seed array... [2.009s] Computing hash join... [6.039s] Masking low complexity seeds... [0.277s] Searching alignments... [36.549s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.923s] Building query seed array... [1.815s] Computing hash join... [5.861s] Masking low complexity seeds... [0.27s] Searching alignments... [39.471s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 2/2, index chunk 2/4. Building reference seed array... [13.167s] Building query seed array... [2.114s] Computing hash join... [6.239s] Masking low complexity seeds... [0.254s] Searching alignments... [28.972s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.725s] Building query seed array... [2.212s] Computing hash join... [5.913s] Masking low complexity seeds... [0.253s] Searching alignments... [33.165s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.572s] Building query seed array... [1.806s] Computing hash join... [5.889s] Masking low complexity seeds... [0.228s] Searching alignments... [27.749s] Deallocating memory... [0s] Deallocating buffers... [1.503s] Clearing query masking... [1.484s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [11.325s] Sorting trace points... [2.265s] Computing alignments... [56.293s] Deallocating buffers... [0.027s] Loading trace points... [0.069s] Sorting trace points... [2.418s] Computing alignments... [56.477s] Deallocating buffers... [0.114s] Loading trace points... [0.14s] Sorting trace points... [1.793s] Computing alignments... [55.771s] Deallocating buffers... [0.106s] Loading trace points... [0.044s] Sorting trace points... [2.156s] Computing alignments... [55.67s] Deallocating buffers... [0.023s] Loading trace points... [0.059s] Sorting trace points... [1.147s] Computing alignments... [29.154s] Deallocating buffers... [0.016s] Loading trace points... [0.083s] Sorting trace points... [1.078s] Computing alignments... [30.352s] Deallocating buffers... [0.016s] Loading trace points... [0.075s] Sorting trace points... [1.173s] Computing alignments... [30.404s] Deallocating buffers... [0.013s] Loading trace points... [0s] Sorting trace points... [1.11s] Computing alignments... [30.22s] Deallocating buffers... [0.013s] Loading trace points... [0.07s] Sorting trace points... [1.194s] Computing alignments... [30.602s] Deallocating buffers... [0.014s] Loading trace points... [0.085s] Sorting trace points... [1.175s] Computing alignments... [30.579s] Deallocating buffers... [0.016s] Loading trace points... [0.001s] Sorting trace points... [1.146s] Computing alignments... [30.411s] Deallocating buffers... [0.013s] Loading trace points... [0s] Sorting trace points... [1.171s] Computing alignments... [30.225s] Deallocating buffers... [0.013s] Loading trace points... [0s] [496.523s] Deallocating reference... [0.063s] Loading reference sequences... [32.199s] Masking reference... [31.53s] Initializing dictionary... [0.077s] Initializing temporary storage... [0.008s] Building reference histograms... [32.226s] Allocating buffers... [0.001s] Processing query block 1, reference block 3/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.276s] Building query seed array... [1.881s] Computing hash join... [6.35s] Masking low complexity seeds... [0.302s] Searching alignments... [72.17s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.367s] Building query seed array... [2.664s] Computing hash join... [6.667s] Masking low complexity seeds... [0.261s] Searching alignments... [48.97s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.759s] Building query seed array... [2.537s] Computing hash join... [6.533s] Masking low complexity seeds... [0.283s] Searching alignments... [42.598s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.45s] Building query seed array... [2.235s] Computing hash join... [6.753s] Masking low complexity seeds... [0.271s] Searching alignments... [37.414s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.696s] Building query seed array... [1.968s] Computing hash join... [6.355s] Masking low complexity seeds... [0.244s] Searching alignments... [41.068s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.559s] Building query seed array... [2.215s] Computing hash join... [6.802s] Masking low complexity seeds... [0.238s] Searching alignments... [29.441s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.656s] Building query seed array... [2.369s] Computing hash join... [6.501s] Masking low complexity seeds... [0.281s] Searching alignments... [34.968s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.458s] Building query seed array... [1.891s] Computing hash join... [6.245s] Masking low complexity seeds... [0.224s] Searching alignments... [28.833s] Deallocating memory... [0s] Deallocating buffers... [1.485s] Clearing query masking... [1.503s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [11.524s] Sorting trace points... [2.265s] Computing alignments... [56.058s] Deallocating buffers... [0.023s] Loading trace points... [0.098s] Sorting trace points... [1.89s] Computing alignments... [56.329s] Deallocating buffers... [0.028s] Loading trace points... [0.123s] Sorting trace points... [1.809s] Computing alignments... [55.771s] Deallocating buffers... [0.027s] Loading trace points... [0.04s] Sorting trace points... [1.671s] Computing alignments... [55.716s] Deallocating buffers... [0.027s] Loading trace points... [0.062s] Sorting trace points... [1.089s] Computing alignments... [29.082s] Deallocating buffers... [0.012s] Loading trace points... [0.05s] Sorting trace points... [1.179s] Computing alignments... [30.387s] Deallocating buffers... [0.013s] Loading trace points... [0.063s] Sorting trace points... [0.956s] Computing alignments... [30.523s] Deallocating buffers... [0.014s] Loading trace points... [0.066s] Sorting trace points... [0.999s] Computing alignments... [30.274s] Deallocating buffers... [0.015s] Loading trace points... [0.063s] Sorting trace points... [1.151s] Computing alignments... [30.563s] Deallocating buffers... [0.013s] Loading trace points... [0.051s] Sorting trace points... [1.166s] Computing alignments... [30.549s] Deallocating buffers... [0.013s] Loading trace points... [0.07s] Sorting trace points... [1.183s] Computing alignments... [30.4s] Deallocating buffers... [0.013s] Loading trace points... [0s] Sorting trace points... [1.159s] Computing alignments... [30.218s] Deallocating buffers... [0.013s] Loading trace points... [0s] [495.672s] Deallocating reference... [0.061s] Loading reference sequences... [29.463s] Masking reference... [30.94s] Initializing dictionary... [0.077s] Initializing temporary storage... [0.007s] Building reference histograms... [32.348s] Allocating buffers... [0.001s] Processing query block 1, reference block 4/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.062s] Building query seed array... [1.98s] Computing hash join... [6.44s] Masking low complexity seeds... [0.247s] Searching alignments... [69.143s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 1/2, index chunk 2/4. Building reference seed array... [13.233s] Building query seed array... [2.761s] Computing hash join... [6.14s] Masking low complexity seeds... [0.272s] Searching alignments... [48.331s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.515s] Building query seed array... [2.578s] Computing hash join... [6.191s] Masking low complexity seeds... [0.269s] Searching alignments... [40.666s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.469s] Building query seed array... [2.273s] Computing hash join... [6.062s] Masking low complexity seeds... [0.276s] Searching alignments... [36.636s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.252s] Building query seed array... [1.915s] Computing hash join... [6.087s] Masking low complexity seeds... [0.256s] Searching alignments... [41.716s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.834s] Building query seed array... [2.156s] Computing hash join... [6.223s] Masking low complexity seeds... [0.25s] Searching alignments... [30.033s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.655s] Building query seed array... [2.286s] Computing hash join... [6.008s] Masking low complexity seeds... [0.259s] Searching alignments... [33.97s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.305s] Building query seed array... [1.863s] Computing hash join... [5.993s] Masking low complexity seeds... [0.215s] Searching alignments... [28.175s] Deallocating memory... [0s] Deallocating buffers... [1.747s] Clearing query masking... [1.451s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [12.154s] Sorting trace points... [2.403s] Computing alignments... [56.287s] Deallocating buffers... [0.024s] Loading trace points... [0.092s] Sorting trace points... [2.314s] Computing alignments... [56.347s] Deallocating buffers... [0.094s] Loading trace points... [0.125s] Sorting trace points... [1.864s] Computing alignments... [55.783s] Deallocating buffers... [0.024s] Loading trace points... [0.071s] Sorting trace points... [1.714s] Computing alignments... [55.833s] Deallocating buffers... [0.027s] Loading trace points... [0.063s] Sorting trace points... [1.022s] Computing alignments... [29.174s] Deallocating buffers... [0.015s] Loading trace points... [0.043s] Sorting trace points... [1.152s] Computing alignments... [30.466s] Deallocating buffers... [0.013s] Loading trace points... [0.064s] Sorting trace points... [1.141s] Computing alignments... [30.711s] Deallocating buffers... [0.014s] Loading trace points... [0.04s] Sorting trace points... [1.17s] Computing alignments... [30.321s] Deallocating buffers... [0.013s] Loading trace points... [0.053s] Sorting trace points... [1.153s] Computing alignments... [30.576s] Deallocating buffers... [0.013s] Loading trace points... [0.061s] Sorting trace points... [1.099s] Computing alignments... [30.638s] Deallocating buffers... [0.016s] Loading trace points... [0.05s] Sorting trace points... [1.027s] Computing alignments... [30.621s] Deallocating buffers... [0.014s] Loading trace points... [0s] Sorting trace points... [1.162s] Computing alignments... [30.451s] Deallocating buffers... [0.016s] Loading trace points... [0s] [497.693s] Deallocating reference... [0.06s] Loading reference sequences... [30.13s] Masking reference... [30.954s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.009s] Building reference histograms... [32.991s] Allocating buffers... [0.001s] Processing query block 1, reference block 5/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.569s] Building query seed array... [1.873s] Computing hash join... [6.422s] Masking low complexity seeds... [0.436s] Searching alignments... [71.351s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.179s] Building query seed array... [2.6s] Computing hash join... [5.932s] Masking low complexity seeds... [0.284s] Searching alignments... [46.796s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.942s] Building query seed array... [2.648s] Computing hash join... [6.451s] Masking low complexity seeds... [0.252s] Searching alignments... [39.639s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.281s] Building query seed array... [2.087s] Computing hash join... [6.117s] Masking low complexity seeds... [0.24s] Searching alignments... [37.089s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.427s] Building query seed array... [1.91s] Computing hash join... [6.083s] Masking low complexity seeds... [0.232s] Searching alignments... [41.95s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 2/2, index chunk 2/4. Building reference seed array... [13.236s] Building query seed array... [2.196s] Computing hash join... [6.181s] Masking low complexity seeds... [0.249s] Searching alignments... [30.184s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.456s] Building query seed array... [2.335s] Computing hash join... [6.241s] Masking low complexity seeds... [0.253s] Searching alignments... [34.844s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 2/2, index chunk 4/4. Building reference seed array... [11.072s] Building query seed array... [1.909s] Computing hash join... [6.05s] Masking low complexity seeds... [0.235s] Searching alignments... [28.205s] Deallocating memory... [0s] Deallocating buffers... [1.987s] Clearing query masking... [1.464s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [11.389s] Sorting trace points... [2.28s] Computing alignments... [56.001s] Deallocating buffers... [0.024s] Loading trace points... [0.088s] Sorting trace points... [2.167s] Computing alignments... [56.08s] Deallocating buffers... [0.101s] Loading trace points... [0.105s] Sorting trace points... [2.523s] Computing alignments... [56.512s] Deallocating buffers... [0.414s] Loading trace points... [0.093s] Sorting trace points... [1.839s] Computing alignments... [55.681s] Deallocating buffers... [0.027s] Loading trace points... [0.065s] Sorting trace points... [1.046s] Computing alignments... [29.197s] Deallocating buffers... [0.015s] Loading trace points... [0.001s] Sorting trace points... [1.182s] Computing alignments... [30.861s] Deallocating buffers... [0.013s] Loading trace points... [0.051s] Sorting trace points... [1.163s] Computing alignments... [30.497s] Deallocating buffers... [0.016s] Loading trace points... [0.054s] Sorting trace points... [1.131s] Computing alignments... [30.229s] Deallocating buffers... [0.016s] Loading trace points... [0.001s] Sorting trace points... [1.156s] Computing alignments... [31.011s] Deallocating buffers... [0.016s] Loading trace points... [0.057s] Sorting trace points... [0.867s] Computing alignments... [30.572s] Deallocating buffers... [0.015s] Loading trace points... [0.046s] Sorting trace points... [1.19s] Computing alignments... [30.463s] Deallocating buffers... [0.013s] Loading trace points... [0s] Sorting trace points... [1.167s] Computing alignments... [30.331s] Deallocating buffers... [0.013s] Loading trace points... [0s] [497.922s] Deallocating reference... [0.062s] Loading reference sequences... [32.771s] Masking reference... [31.435s] Initializing dictionary... [0.077s] Initializing temporary storage... [0.008s] Building reference histograms... [32.294s] Allocating buffers... [0.001s] Processing query block 1, reference block 6/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.228s] Building query seed array... [1.864s] Computing hash join... [7.061s] Masking low complexity seeds... [0.459s] Searching alignments... [69.243s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.285s] Building query seed array... [2.671s] Computing hash join... [6.508s] Masking low complexity seeds... [0.258s] Searching alignments... [46.642s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 1/2, index chunk 3/4. Building reference seed array... [14.417s] Building query seed array... [2.533s] Computing hash join... [7.251s] Masking low complexity seeds... [0.272s] Searching alignments... [39.967s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.647s] Building query seed array... [2.2s] Computing hash join... [6.534s] Masking low complexity seeds... [0.235s] Searching alignments... [34.871s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.651s] Building query seed array... [1.901s] Computing hash join... [6.353s] Masking low complexity seeds... [0.23s] Searching alignments... [37.385s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.464s] Building query seed array... [2.318s] Computing hash join... [6.431s] Masking low complexity seeds... [0.22s] Searching alignments... [29.309s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.817s] Building query seed array... [2.295s] Computing hash join... [6.542s] Masking low complexity seeds... [0.232s] Searching alignments... [33.853s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.49s] Building query seed array... [2.006s] Computing hash join... [6.398s] Masking low complexity seeds... [0.226s] Searching alignments... [27.129s] Deallocating memory... [0s] Deallocating buffers... [1.622s] Clearing query masking... [1.474s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [11.599s] Sorting trace points... [2.243s] Computing alignments... [55.506s] Deallocating buffers... [0.029s] Loading trace points... [0.149s] Sorting trace points... [2.429s] Computing alignments... [55.856s] Deallocating buffers... [0.359s] Loading trace points... [0.183s] Sorting trace points... [2.005s] Computing alignments... [55.189s] Deallocating buffers... [0.024s] Loading trace points... [0.095s] Sorting trace points... [2.136s] Computing alignments... [55.25s] Deallocating buffers... [0.023s] Loading trace points... [0.097s] Sorting trace points... [0.814s] Computing alignments... [28.808s] Deallocating buffers... [0.014s] Loading trace points... [0.073s] Sorting trace points... [1.145s] Computing alignments... [30.21s] Deallocating buffers... [0.013s] Loading trace points... [0.06s] Sorting trace points... [0.981s] Computing alignments... [30.216s] Deallocating buffers... [0.014s] Loading trace points... [0.068s] Sorting trace points... [1.145s] Computing alignments... [29.881s] Deallocating buffers... [0.012s] Loading trace points... [0.082s] Sorting trace points... [1.148s] Computing alignments... [30.198s] Deallocating buffers... [0.016s] Loading trace points... [0.075s] Sorting trace points... [1.131s] Computing alignments... [30.21s] Deallocating buffers... [0.013s] Loading trace points... [0.094s] Sorting trace points... [1.148s] Computing alignments... [30.05s] Deallocating buffers... [0.013s] Loading trace points... [0s] Sorting trace points... [1.173s] Computing alignments... [30.017s] Deallocating buffers... [0.016s] Loading trace points... [0s] [492.274s] Deallocating reference... [0.061s] Loading reference sequences... [30.199s] Masking reference... [30.924s] Initializing dictionary... [0.077s] Initializing temporary storage... [0.008s] Building reference histograms... [32.329s] Allocating buffers... [0.001s] Processing query block 1, reference block 7/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.227s] Building query seed array... [1.872s] Computing hash join... [6.694s] Masking low complexity seeds... [0.251s] Searching alignments... [72.007s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 1/2, index chunk 2/4. Building reference seed array... [13.249s] Building query seed array... [2.612s] Computing hash join... [6.506s] Masking low complexity seeds... [0.245s] Searching alignments... [51.137s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.785s] Building query seed array... [2.438s] Computing hash join... [6.836s] Masking low complexity seeds... [0.249s] Searching alignments... [41.492s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.759s] Building query seed array... [2.118s] Computing hash join... [6.446s] Masking low complexity seeds... [0.25s] Searching alignments... [35.867s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.292s] Building query seed array... [1.937s] Computing hash join... [6.178s] Masking low complexity seeds... [0.225s] Searching alignments... [40.611s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 2/2, index chunk 2/4. Building reference seed array... [13.364s] Building query seed array... [2.202s] Computing hash join... [6.101s] Masking low complexity seeds... [0.265s] Searching alignments... [29.407s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 2/2, index chunk 3/4. Building reference seed array... [14.134s] Building query seed array... [2.345s] Computing hash join... [6.313s] Masking low complexity seeds... [0.229s] Searching alignments... [34.384s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.295s] Building query seed array... [1.813s] Computing hash join... [6.216s] Masking low complexity seeds... [0.216s] Searching alignments... [28.599s] Deallocating memory... [0s] Deallocating buffers... [1.998s] Clearing query masking... [1.485s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [11.89s] Sorting trace points... [2.339s] Computing alignments... [56.201s] Deallocating buffers... [0.027s] Loading trace points... [0.138s] Sorting trace points... [2.272s] Computing alignments... [56.149s] Deallocating buffers... [0.3s] Loading trace points... [0.142s] Sorting trace points... [2.079s] Computing alignments... [55.659s] Deallocating buffers... [0.028s] Loading trace points... [0.067s] Sorting trace points... [2.231s] Computing alignments... [55.606s] Deallocating buffers... [0.197s] Loading trace points... [0.083s] Sorting trace points... [1.144s] Computing alignments... [29.058s] Deallocating buffers... [0.015s] Loading trace points... [0.039s] Sorting trace points... [0.96s] Computing alignments... [30.322s] Deallocating buffers... [0.015s] Loading trace points... [0.06s] Sorting trace points... [1.142s] Computing alignments... [30.404s] Deallocating buffers... [0.013s] Loading trace points... [0.058s] Sorting trace points... [1.157s] Computing alignments... [30.079s] Deallocating buffers... [0.016s] Loading trace points... [0.046s] Sorting trace points... [1.196s] Computing alignments... [30.425s] Deallocating buffers... [0.013s] Loading trace points... [0.06s] Sorting trace points... [1.151s] Computing alignments... [30.501s] Deallocating buffers... [0.104s] Loading trace points... [0.053s] Sorting trace points... [1.146s] Computing alignments... [30.36s] Deallocating buffers... [0.013s] Loading trace points... [0s] Sorting trace points... [1.199s] Computing alignments... [30.169s] Deallocating buffers... [0.017s] Loading trace points... [0s] [496.548s] Deallocating reference... [0.061s] Loading reference sequences... [29.273s] Masking reference... [30.873s] Initializing dictionary... [0.077s] Initializing temporary storage... [0.008s] Building reference histograms... [32.358s] Allocating buffers... [0s] Processing query block 1, reference block 8/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.279s] Building query seed array... [1.902s] Computing hash join... [7.085s] Masking low complexity seeds... [0.253s] Searching alignments... [70.658s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.513s] Building query seed array... [2.586s] Computing hash join... [6.562s] Masking low complexity seeds... [0.259s] Searching alignments... [47.186s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.894s] Building query seed array... [2.543s] Computing hash join... [7.136s] Masking low complexity seeds... [0.277s] Searching alignments... [41.278s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.765s] Building query seed array... [2.013s] Computing hash join... [6.645s] Masking low complexity seeds... [0.237s] Searching alignments... [36.096s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.607s] Building query seed array... [1.892s] Computing hash join... [6.425s] Masking low complexity seeds... [0.229s] Searching alignments... [39.213s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.872s] Building query seed array... [2.182s] Computing hash join... [6.497s] Masking low complexity seeds... [0.244s] Searching alignments... [28.953s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.722s] Building query seed array... [2.201s] Computing hash join... [6.637s] Masking low complexity seeds... [0.241s] Searching alignments... [34.89s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.429s] Building query seed array... [1.931s] Computing hash join... [6.458s] Masking low complexity seeds... [0.231s] Searching alignments... [27.694s] Deallocating memory... [0s] Deallocating buffers... [1.84s] Clearing query masking... [1.459s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [13.164s] Sorting trace points... [2.348s] Computing alignments... [56.752s] Deallocating buffers... [0.17s] Loading trace points... [0.122s] Sorting trace points... [2.628s] Computing alignments... [56.28s] Deallocating buffers... [0.518s] Loading trace points... [0.189s] Sorting trace points... [1.765s] Computing alignments... [55.566s] Deallocating buffers... [0.027s] Loading trace points... [0.063s] Sorting trace points... [1.792s] Computing alignments... [55.827s] Deallocating buffers... [0.07s] Loading trace points... [0.067s] Sorting trace points... [1.116s] Computing alignments... [29.045s] Deallocating buffers... [0.015s] Loading trace points... [0.057s] Sorting trace points... [1.226s] Computing alignments... [30.282s] Deallocating buffers... [0.104s] Loading trace points... [0.065s] Sorting trace points... [1.174s] Computing alignments... [30.414s] Deallocating buffers... [0.015s] Loading trace points... [0.046s] Sorting trace points... [0.851s] Computing alignments... [30.1s] Deallocating buffers... [0.015s] Loading trace points... [0.046s] Sorting trace points... [1.183s] Computing alignments... [30.476s] Deallocating buffers... [0.013s] Loading trace points... [0.072s] Sorting trace points... [1.14s] Computing alignments... [30.553s] Deallocating buffers... [0.016s] Loading trace points... [0.059s] Sorting trace points... [1.144s] Computing alignments... [30.362s] Deallocating buffers... [0.016s] Loading trace points... [0s] Sorting trace points... [1.18s] Computing alignments... [30.278s] Deallocating buffers... [0.013s] Loading trace points... [0s] [498.686s] Deallocating reference... [0.055s] Loading reference sequences... [30.993s] Masking reference... [30.889s] Initializing dictionary... [0.077s] Initializing temporary storage... [0.008s] Building reference histograms... [32.99s] Allocating buffers... [0s] Processing query block 1, reference block 9/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.622s] Building query seed array... [1.894s] Computing hash join... [6.51s] Masking low complexity seeds... [0.244s] Searching alignments... [70.686s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.771s] Building query seed array... [2.72s] Computing hash join... [6.365s] Masking low complexity seeds... [0.284s] Searching alignments... [48.27s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.943s] Building query seed array... [2.427s] Computing hash join... [6.035s] Masking low complexity seeds... [0.27s] Searching alignments... [43.043s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.403s] Building query seed array... [2.119s] Computing hash join... [6.092s] Masking low complexity seeds... [0.297s] Searching alignments... [36.945s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.565s] Building query seed array... [1.853s] Computing hash join... [6.067s] Masking low complexity seeds... [0.28s] Searching alignments... [39.972s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 2/2, index chunk 2/4. Building reference seed array... [13.02s] Building query seed array... [2.156s] Computing hash join... [6.269s] Masking low complexity seeds... [0.267s] Searching alignments... [28.667s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.692s] Building query seed array... [2.254s] Computing hash join... [5.934s] Masking low complexity seeds... [0.223s] Searching alignments... [34.554s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.555s] Building query seed array... [1.864s] Computing hash join... [6.387s] Masking low complexity seeds... [0.228s] Searching alignments... [28.053s] Deallocating memory... [0s] Deallocating buffers... [2.171s] Clearing query masking... [1.436s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [11.473s] Sorting trace points... [2.333s] Computing alignments... [55.936s] Deallocating buffers... [0.028s] Loading trace points... [0.043s] Sorting trace points... [2.551s] Computing alignments... [56.118s] Deallocating buffers... [0.496s] Loading trace points... [0.134s] Sorting trace points... [2.332s] Computing alignments... [55.354s] Deallocating buffers... [0.129s] Loading trace points... [0.058s] Sorting trace points... [2.233s] Computing alignments... [55.437s] Deallocating buffers... [0.023s] Loading trace points... [0.066s] Sorting trace points... [1.157s] Computing alignments... [28.974s] Deallocating buffers... [0.03s] Loading trace points... [0s] Sorting trace points... [1.154s] Computing alignments... [30.318s] Deallocating buffers... [0.016s] Loading trace points... [0.058s] Sorting trace points... [1.245s] Computing alignments... [30.403s] Deallocating buffers... [0.102s] Loading trace points... [0s] Sorting trace points... [1.171s] Computing alignments... [30.197s] Deallocating buffers... [0.013s] Loading trace points... [0.098s] Sorting trace points... [1.135s] Computing alignments... [30.413s] Deallocating buffers... [0.016s] Loading trace points... [0.078s] Sorting trace points... [1.066s] Computing alignments... [30.467s] Deallocating buffers... [0.013s] Loading trace points... [0.002s] Sorting trace points... [0.986s] Computing alignments... [30.326s] Deallocating buffers... [0.013s] Loading trace points... [0s] Sorting trace points... [1.057s] Computing alignments... [30.092s] Deallocating buffers... [0.016s] Loading trace points... [0s] [495.558s] Deallocating reference... [0.056s] Loading reference sequences... [29.125s] Masking reference... [30.876s] Initializing dictionary... [0.077s] Initializing temporary storage... [0.007s] Building reference histograms... [32.542s] Allocating buffers... [0s] Processing query block 1, reference block 10/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.436s] Building query seed array... [1.911s] Computing hash join... [6.653s] Masking low complexity seeds... [0.262s] Searching alignments... [71.62s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.635s] Building query seed array... [2.569s] Computing hash join... [6.268s] Masking low complexity seeds... [0.3s] Searching alignments... [46.709s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.789s] Building query seed array... [2.585s] Computing hash join... [6.265s] Masking low complexity seeds... [0.29s] Searching alignments... [41.203s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 1/2, index chunk 4/4. Building reference seed array... [11.337s] Building query seed array... [2.135s] Computing hash join... [6.272s] Masking low complexity seeds... [0.25s] Searching alignments... [36.996s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 2/2, index chunk 1/4. Building reference seed array... [11.081s] Building query seed array... [1.881s] Computing hash join... [6.073s] Masking low complexity seeds... [0.26s] Searching alignments... [40.645s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 2/2, index chunk 2/4. Building reference seed array... [13.811s] Building query seed array... [2.212s] Computing hash join... [6.236s] Masking low complexity seeds... [0.24s] Searching alignments... [29.645s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.658s] Building query seed array... [2.254s] Computing hash join... [5.853s] Masking low complexity seeds... [0.263s] Searching alignments... [34.163s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.991s] Building query seed array... [1.971s] Computing hash join... [5.777s] Masking low complexity seeds... [0.215s] Searching alignments... [28.418s] Deallocating memory... [0s] Deallocating buffers... [2.347s] Clearing query masking... [1.456s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [11.675s] Sorting trace points... [2.109s] Computing alignments... [56.07s] Deallocating buffers... [0.027s] Loading trace points... [0.085s] Sorting trace points... [2.041s] Computing alignments... [56.008s] Deallocating buffers... [0.248s] Loading trace points... [1.112s] Sorting trace points... [2.214s] Computing alignments... [55.384s] Deallocating buffers... [0.023s] Loading trace points... [0.746s] Sorting trace points... [2.187s] Computing alignments... [55.574s] Deallocating buffers... [0.082s] Loading trace points... [0.069s] Sorting trace points... [1.211s] Computing alignments... [29.074s] Deallocating buffers... [0.211s] Loading trace points... [0.036s] Sorting trace points... [0.951s] Computing alignments... [30.236s] Deallocating buffers... [0.014s] Loading trace points... [0.298s] Sorting trace points... [1.044s] Computing alignments... [30.279s] Deallocating buffers... [0.014s] Loading trace points... [0.038s] Sorting trace points... [1.172s] Computing alignments... [30.072s] Deallocating buffers... [0.013s] Loading trace points... [0.001s] Sorting trace points... [0.945s] Computing alignments... [30.43s] Deallocating buffers... [0.015s] Loading trace points... [0.057s] Sorting trace points... [1.082s] Computing alignments... [30.458s] Deallocating buffers... [0.015s] Loading trace points... [0.047s] Sorting trace points... [1.125s] Computing alignments... [30.383s] Deallocating buffers... [0.015s] Loading trace points... [0s] Sorting trace points... [1.305s] Computing alignments... [30.222s] Deallocating buffers... [0.148s] Loading trace points... [0s] [496.74s] Deallocating reference... [0.061s] Loading reference sequences... [35.402s] Masking reference... [31.094s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.007s] Building reference histograms... [32.206s] Allocating buffers... [0s] Processing query block 1, reference block 11/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.385s] Building query seed array... [1.856s] Computing hash join... [7.141s] Masking low complexity seeds... [0.24s] Searching alignments... [68.374s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 1/2, index chunk 2/4. Building reference seed array... [13.304s] Building query seed array... [2.739s] Computing hash join... [6.633s] Masking low complexity seeds... [0.265s] Searching alignments... [48.937s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.602s] Building query seed array... [2.459s] Computing hash join... [6.323s] Masking low complexity seeds... [0.257s] Searching alignments... [41.438s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.202s] Building query seed array... [2.17s] Computing hash join... [6.762s] Masking low complexity seeds... [0.263s] Searching alignments... [34.863s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.706s] Building query seed array... [1.866s] Computing hash join... [6.34s] Masking low complexity seeds... [0.235s] Searching alignments... [40.975s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.915s] Building query seed array... [2.255s] Computing hash join... [6.94s] Masking low complexity seeds... [0.236s] Searching alignments... [29.405s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.897s] Building query seed array... [2.341s] Computing hash join... [6.799s] Masking low complexity seeds... [0.237s] Searching alignments... [33.269s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.174s] Building query seed array... [1.923s] Computing hash join... [6.575s] Masking low complexity seeds... [0.239s] Searching alignments... [27.94s] Deallocating memory... [0s] Deallocating buffers... [1.727s] Clearing query masking... [1.594s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [13.35s] Sorting trace points... [2.222s] Computing alignments... [55.841s] Deallocating buffers... [0.024s] Loading trace points... [0.155s] Sorting trace points... [2.08s] Computing alignments... [55.823s] Deallocating buffers... [0.215s] Loading trace points... [0.137s] Sorting trace points... [2.021s] Computing alignments... [55.385s] Deallocating buffers... [0.024s] Loading trace points... [0.04s] Sorting trace points... [1.903s] Computing alignments... [55.287s] Deallocating buffers... [0.091s] Loading trace points... [0.07s] Sorting trace points... [0.804s] Computing alignments... [29.077s] Deallocating buffers... [0.014s] Loading trace points... [0.094s] Sorting trace points... [1.163s] Computing alignments... [30.11s] Deallocating buffers... [0.016s] Loading trace points... [0.078s] Sorting trace points... [1.182s] Computing alignments... [30.375s] Deallocating buffers... [0.013s] Loading trace points... [0.081s] Sorting trace points... [1.166s] Computing alignments... [30.104s] Deallocating buffers... [0.016s] Loading trace points... [0.084s] Sorting trace points... [1.202s] Computing alignments... [30.308s] Deallocating buffers... [0.016s] Loading trace points... [0.06s] Sorting trace points... [1.235s] Computing alignments... [30.324s] Deallocating buffers... [0.045s] Loading trace points... [0.092s] Sorting trace points... [1.089s] Computing alignments... [30.285s] Deallocating buffers... [0.013s] Loading trace points... [0s] Sorting trace points... [1.142s] Computing alignments... [30.035s] Deallocating buffers... [0.013s] Loading trace points... [0s] [495.222s] Deallocating reference... [0.17s] Loading reference sequences... [34.499s] Masking reference... [31.827s] Initializing dictionary... [0.077s] Initializing temporary storage... [0.008s] Building reference histograms... [32.084s] Allocating buffers... [0s] Processing query block 1, reference block 12/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.177s] Building query seed array... [1.915s] Computing hash join... [7.086s] Masking low complexity seeds... [0.252s] Searching alignments... [72.062s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.722s] Building query seed array... [2.759s] Computing hash join... [6.704s] Masking low complexity seeds... [0.232s] Searching alignments... [47.795s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 1/2, index chunk 3/4. Building reference seed array... [14.36s] Building query seed array... [2.611s] Computing hash join... [7.128s] Masking low complexity seeds... [0.247s] Searching alignments... [40.748s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.801s] Building query seed array... [2.071s] Computing hash join... [7.162s] Masking low complexity seeds... [0.246s] Searching alignments... [35.776s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.57s] Building query seed array... [1.992s] Computing hash join... [7.08s] Masking low complexity seeds... [0.272s] Searching alignments... [40.296s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.606s] Building query seed array... [2.241s] Computing hash join... [6.409s] Masking low complexity seeds... [0.242s] Searching alignments... [29.055s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 2/2, index chunk 3/4. Building reference seed array... [14.015s] Building query seed array... [2.246s] Computing hash join... [6.908s] Masking low complexity seeds... [0.224s] Searching alignments... [34.956s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.138s] Building query seed array... [1.884s] Computing hash join... [6.771s] Masking low complexity seeds... [0.273s] Searching alignments... [27.87s] Deallocating memory... [0s] Deallocating buffers... [2.056s] Clearing query masking... [1.458s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [13.111s] Sorting trace points... [2.235s] Computing alignments... [56.103s] Deallocating buffers... [0.105s] Loading trace points... [0.091s] Sorting trace points... [2.536s] Computing alignments... [56.279s] Deallocating buffers... [0.397s] Loading trace points... [0.182s] Sorting trace points... [1.618s] Computing alignments... [55.654s] Deallocating buffers... [0.026s] Loading trace points... [0.041s] Sorting trace points... [1.712s] Computing alignments... [55.552s] Deallocating buffers... [0.026s] Loading trace points... [0.082s] Sorting trace points... [1.111s] Computing alignments... [29.049s] Deallocating buffers... [0.012s] Loading trace points... [0.04s] Sorting trace points... [1.175s] Computing alignments... [30.335s] Deallocating buffers... [0.013s] Loading trace points... [0.085s] Sorting trace points... [1.152s] Computing alignments... [30.386s] Deallocating buffers... [0.013s] Loading trace points... [0.633s] Sorting trace points... [1.208s] Computing alignments... [30.069s] Deallocating buffers... [0.013s] Loading trace points... [0.059s] Sorting trace points... [1.307s] Computing alignments... [30.402s] Deallocating buffers... [0.133s] Loading trace points... [0.062s] Sorting trace points... [1.214s] Computing alignments... [30.487s] Deallocating buffers... [0.013s] Loading trace points... [0.045s] Sorting trace points... [1.123s] Computing alignments... [30.282s] Deallocating buffers... [0.013s] Loading trace points... [0s] Sorting trace points... [1.154s] Computing alignments... [30.264s] Deallocating buffers... [0.013s] Loading trace points... [0s] [497.903s] Deallocating reference... [0.057s] Loading reference sequences... [33.78s] Masking reference... [31.195s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.009s] Building reference histograms... [32.179s] Allocating buffers... [0.001s] Processing query block 1, reference block 13/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.52s] Building query seed array... [1.975s] Computing hash join... [7.217s] Masking low complexity seeds... [0.466s] Searching alignments... [72.449s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.774s] Building query seed array... [2.729s] Computing hash join... [7.075s] Masking low complexity seeds... [0.248s] Searching alignments... [46.622s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.883s] Building query seed array... [2.487s] Computing hash join... [6.557s] Masking low complexity seeds... [0.259s] Searching alignments... [41.204s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.097s] Building query seed array... [2.04s] Computing hash join... [7.133s] Masking low complexity seeds... [0.282s] Searching alignments... [35.88s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.494s] Building query seed array... [2.012s] Computing hash join... [6.399s] Masking low complexity seeds... [0.267s] Searching alignments... [39.99s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 2/2, index chunk 2/4. Building reference seed array... [13.413s] Building query seed array... [2.264s] Computing hash join... [6.775s] Masking low complexity seeds... [0.253s] Searching alignments... [29.317s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.917s] Building query seed array... [2.366s] Computing hash join... [6.257s] Masking low complexity seeds... [0.267s] Searching alignments... [34.929s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.447s] Building query seed array... [1.871s] Computing hash join... [6.325s] Masking low complexity seeds... [0.237s] Searching alignments... [28.838s] Deallocating memory... [0s] Deallocating buffers... [2.032s] Clearing query masking... [1.547s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [12.382s] Sorting trace points... [2.285s] Computing alignments... [55.667s] Deallocating buffers... [0.029s] Loading trace points... [0.044s] Sorting trace points... [1.771s] Computing alignments... [56.138s] Deallocating buffers... [0.11s] Loading trace points... [0.104s] Sorting trace points... [2.372s] Computing alignments... [55.497s] Deallocating buffers... [0.099s] Loading trace points... [0.052s] Sorting trace points... [2.415s] Computing alignments... [55.512s] Deallocating buffers... [0.333s] Loading trace points... [0.1s] Sorting trace points... [1.004s] Computing alignments... [29.136s] Deallocating buffers... [0.014s] Loading trace points... [0s] Sorting trace points... [0.886s] Computing alignments... [30.24s] Deallocating buffers... [0.014s] Loading trace points... [0.065s] Sorting trace points... [1.163s] Computing alignments... [30.361s] Deallocating buffers... [0.016s] Loading trace points... [0.001s] Sorting trace points... [1.146s] Computing alignments... [30.088s] Deallocating buffers... [0.013s] Loading trace points... [0.14s] Sorting trace points... [1.155s] Computing alignments... [30.385s] Deallocating buffers... [0.016s] Loading trace points... [0.063s] Sorting trace points... [1.071s] Computing alignments... [30.43s] Deallocating buffers... [0.013s] Loading trace points... [0.043s] Sorting trace points... [0.851s] Computing alignments... [30.211s] Deallocating buffers... [0.014s] Loading trace points... [0s] Sorting trace points... [1.146s] Computing alignments... [30.181s] Deallocating buffers... [0.016s] Loading trace points... [0s] [495.199s] Deallocating reference... [0.057s] Loading reference sequences... [25.074s] Masking reference... [26.017s] Initializing dictionary... [0.063s] Initializing temporary storage... [0.008s] Building reference histograms... [26.606s] Allocating buffers... [0s] Processing query block 1, reference block 14/14, shape 1/2, index chunk 1/4. Building reference seed array... [8.452s] Building query seed array... [1.932s] Computing hash join... [5.174s] Masking low complexity seeds... [0.234s] Searching alignments... [58.34s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 1/2, index chunk 2/4. Building reference seed array... [10.011s] Building query seed array... [2.717s] Computing hash join... [5.405s] Masking low complexity seeds... [0.268s] Searching alignments... [40.298s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 1/2, index chunk 3/4. Building reference seed array... [11.372s] Building query seed array... [2.526s] Computing hash join... [5.018s] Masking low complexity seeds... [0.224s] Searching alignments... [34.298s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 1/2, index chunk 4/4. Building reference seed array... [8.185s] Building query seed array... [2.073s] Computing hash join... [5.003s] Masking low complexity seeds... [0.217s] Searching alignments... [28.987s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 2/2, index chunk 1/4. Building reference seed array... [8.202s] Building query seed array... [1.81s] Computing hash join... [4.917s] Masking low complexity seeds... [0.207s] Searching alignments... [31.741s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 2/2, index chunk 2/4. Building reference seed array... [9.899s] Building query seed array... [2.202s] Computing hash join... [4.89s] Masking low complexity seeds... [0.209s] Searching alignments... [24.25s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 2/2, index chunk 3/4. Building reference seed array... [10.758s] Building query seed array... [2.302s] Computing hash join... [5.049s] Masking low complexity seeds... [0.22s] Searching alignments... [28.12s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 2/2, index chunk 4/4. Building reference seed array... [7.924s] Building query seed array... [1.861s] Computing hash join... [5.13s] Masking low complexity seeds... [0.287s] Searching alignments... [22.944s] Deallocating memory... [0s] Deallocating buffers... [0.66s] Clearing query masking... [1.503s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [9.964s] Sorting trace points... [1.794s] Computing alignments... [44.269s] Deallocating buffers... [0.022s] Loading trace points... [0.133s] Sorting trace points... [1.619s] Computing alignments... [44.672s] Deallocating buffers... [0.172s] Loading trace points... [0.163s] Sorting trace points... [1.799s] Computing alignments... [43.983s] Deallocating buffers... [0.033s] Loading trace points... [0.098s] Sorting trace points... [1.777s] Computing alignments... [44.387s] Deallocating buffers... [0.207s] Loading trace points... [0.145s] Sorting trace points... [1.97s] Computing alignments... [46.969s] Deallocating buffers... [0.02s] Loading trace points... [0.167s] Sorting trace points... [2.107s] Computing alignments... [47.833s] Deallocating buffers... [0.173s] Loading trace points... [0.159s] Sorting trace points... [2.023s] Computing alignments... [48.126s] Deallocating buffers... [0.021s] Loading trace points... [0s] Sorting trace points... [2.142s] Computing alignments... [47.623s] Deallocating buffers... [0.41s] Loading trace points... [0s] [395.24s] Deallocating reference... [0.054s] Loading reference sequences... [0.107s] Deallocating buffers... [0s] Joining output blocks... Joining output blocks... [1922.57s] [1922.57s] Deallocating queries... [0.068s] Loading query sequences... [0s] Closing the input file... [0s] Closing the output file... Loading dictionary... [3.559s] [4.608s] Closing the database... [0s] Cleaning up... [0s] Total time = 17092.2s Reported 2133162104 pairwise alignments, 2133162104 HSPs. 12061199 queries aligned. DIAMOND BLASTx on /gscratch/srlab/sam/data/P_verrucosa/RNAseq/E4_R2.fastp-trim.20230215.fq.gz complete: E4_R2.blastx.meganized.daa Now MEGANizing E4_R2.blastx.meganized.daa Version MEGAN Community Edition (version 6.22.0, built 19 Feb 2022) Author(s) Daniel H. Huson Copyright (C) 2022 Daniel H. Huson. This program comes with ABSOLUTELY NO WARRANTY. Java version: 17.0.2 Functional classifications to use: EC, EGGNOG, GTDB, INTERPRO2GO, SEED Loading ncbi.map: 2,396,736 Loading ncbi.tre: 2,396,740 Loading ec.map: 8,200 Loading ec.tre: 8,204 Loading eggnog.map: 30,875 Loading eggnog.tre: 30,986 Loading gtdb.map: 240,103 Loading gtdb.tre: 240,107 Loading interpro2go.map: 14,242 Loading interpro2go.tre: 28,907 Loading seed.map: 961 Loading seed.tre: 962 Meganizing: E4_R2.blastx.meganized.daa Meganizing init Annotating DAA file using FAST mode (accession database and first accession per line) Annotating references 10% 20% 30% 40% 50% 60% 70% 100% (535.8s) Writing 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (1.3s) Binning reads Initializing... Initializing binning... Using 'Naive LCA' algorithm for binning: Taxonomy Using Best-Hit algorithm for binning: SEED Using Best-Hit algorithm for binning: EGGNOG Using 'Naive LCA' algorithm for binning: GTDB Using Best-Hit algorithm for binning: EC Using Best-Hit algorithm for binning: INTERPRO2GO Binning reads... Binning reads Analyzing alignments 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (4,071.8s) Total reads: 12,061,199 With hits: 12,061,199 Alignments: 2,129,201,225 Assig. Taxonomy: 10,985,307 Assig. SEED: 99,973 Assig. EGGNOG: 49,868 Assig. GTDB: 354,113 Assig. EC: 1,898,443 Assig. INTERPRO2GO: 1,137,375 MinSupport set to: 6030 Binning reads Applying min-support & disabled filter to Taxonomy... 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (0.3s) Min-supp. changes: 3,919 Binning reads Applying min-support & disabled filter to GTDB... 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (9.3s) Min-supp. changes: 2,960 Binning reads Writing classification tables 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (23.8s) Binning reads Syncing 100% (0.5s) Class. Taxonomy: 70 Class. SEED: 498 Class. EGGNOG: 1,750 Class. GTDB: 26 Class. EC: 2,339 Class. INTERPRO2GO: 7,730 Total time: 4,651s Peak memory: 35.5 of 195.3G MEGANization of E4_R2.blastx.meganized.daa completed. Generating MD5 checksum for /gscratch/srlab/sam/data/P_verrucosa/RNAseq/E5_R1.fastp-trim.20230215.fq.gz... 3c7b0a35ea2dccda4cc638fddeff66ee /gscratch/srlab/sam/data/P_verrucosa/RNAseq/E5_R1.fastp-trim.20230215.fq.gz Running DIAMOND BLASTx on /gscratch/srlab/sam/data/P_verrucosa/RNAseq/E5_R1.fastp-trim.20230215.fq.gz. diamond v2.1.1.155 (C) Max Planck Society for the Advancement of Science Documentation, support and updates available at http://www.diamondsearch.org Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021) #CPU threads: 40 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: Percentage range of top alignment score to report hits: 5 Opening the database... [0.342s] Database: /gscratch/srlab/blastdbs/20230215-ncbi-nr/20230215-ncbi-nr.dmnd (type: Diamond database, sequences: 526308523, letters: 207134680681) Block size = 15000000000 Opening the input file... [0.703s] Opening the output file... [0s] Loading query sequences... [51.244s] Masking queries... [12.611s] Algorithm: Double-indexed Building query histograms... [12.42s] Loading reference sequences... [31.223s] Masking reference... [32.128s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.009s] Building reference histograms... [32.341s] Allocating buffers... [0.001s] Processing query block 1, reference block 1/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.362s] Building query seed array... [1.417s] Computing hash join... [5.814s] Masking low complexity seeds... [0.177s] Searching alignments... [56.119s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.414s] Building query seed array... [1.885s] Computing hash join... [5.792s] Masking low complexity seeds... [0.186s] Searching alignments... [39.76s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 1/2, index chunk 3/4. Building reference seed array... [14.105s] Building query seed array... [2.018s] Computing hash join... [5.949s] Masking low complexity seeds... [0.195s] Searching alignments... [30.084s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.325s] Building query seed array... [1.628s] Computing hash join... [6.159s] Masking low complexity seeds... [0.254s] Searching alignments... [25.796s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 2/2, index chunk 1/4. Building reference seed array... [9.93s] Building query seed array... [1.351s] Computing hash join... [5.688s] Masking low complexity seeds... [0.173s] Searching alignments... [27.357s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.684s] Building query seed array... [1.675s] Computing hash join... [5.726s] Masking low complexity seeds... [0.168s] Searching alignments... [21.6s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.105s] Building query seed array... [1.662s] Computing hash join... [6.135s] Masking low complexity seeds... [0.246s] Searching alignments... [24.923s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 2/2, index chunk 4/4. Building reference seed array... [9.968s] Building query seed array... [1.42s] Computing hash join... [5.886s] Masking low complexity seeds... [0.177s] Searching alignments... [20.937s] Deallocating memory... [0s] Deallocating buffers... [0.737s] Clearing query masking... [1.088s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [8.731s] Sorting trace points... [1.661s] Computing alignments... [39.39s] Deallocating buffers... [0.018s] Loading trace points... [0.122s] Sorting trace points... [1.523s] Computing alignments... [39.454s] Deallocating buffers... [0.02s] Loading trace points... [0.129s] Sorting trace points... [1.585s] Computing alignments... [39.646s] Deallocating buffers... [0.023s] Loading trace points... [0.118s] Sorting trace points... [1.591s] Computing alignments... [39.307s] Deallocating buffers... [0.017s] Loading trace points... [0.169s] Sorting trace points... [1.608s] Computing alignments... [40.662s] Deallocating buffers... [0.017s] Loading trace points... [0.174s] Sorting trace points... [1.642s] Computing alignments... [41.471s] Deallocating buffers... [0.017s] Loading trace points... [0.176s] Sorting trace points... [1.564s] Computing alignments... [41.587s] Deallocating buffers... [0.022s] Loading trace points... [0s] Sorting trace points... [1.59s] Computing alignments... [41.122s] Deallocating buffers... [0.022s] Loading trace points... [0s] [345.383s] Deallocating reference... [0.059s] Loading reference sequences... [31.354s] Masking reference... [30.979s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.008s] Building reference histograms... [32.787s] Allocating buffers... [0s] Processing query block 1, reference block 2/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.288s] Building query seed array... [1.372s] Computing hash join... [5.352s] Masking low complexity seeds... [0.182s] Searching alignments... [54.572s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 1/2, index chunk 2/4. Building reference seed array... [13.012s] Building query seed array... [2.077s] Computing hash join... [5.785s] Masking low complexity seeds... [0.186s] Searching alignments... [37.523s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.649s] Building query seed array... [1.939s] Computing hash join... [6.04s] Masking low complexity seeds... [0.268s] Searching alignments... [29.971s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.221s] Building query seed array... [1.567s] Computing hash join... [5.992s] Masking low complexity seeds... [0.19s] Searching alignments... [25.554s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.238s] Building query seed array... [1.444s] Computing hash join... [5.601s] Masking low complexity seeds... [0.171s] Searching alignments... [25.598s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.376s] Building query seed array... [1.56s] Computing hash join... [6.099s] Masking low complexity seeds... [0.218s] Searching alignments... [21.324s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.758s] Building query seed array... [1.7s] Computing hash join... [5.721s] Masking low complexity seeds... [0.178s] Searching alignments... [24.6s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.418s] Building query seed array... [1.462s] Computing hash join... [5.816s] Masking low complexity seeds... [0.187s] Searching alignments... [20.204s] Deallocating memory... [0s] Deallocating buffers... [0.923s] Clearing query masking... [1.079s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [10.899s] Sorting trace points... [1.559s] Computing alignments... [39.259s] Deallocating buffers... [0.02s] Loading trace points... [0.123s] Sorting trace points... [1.52s] Computing alignments... [39.207s] Deallocating buffers... [0.017s] Loading trace points... [0.073s] Sorting trace points... [1.536s] Computing alignments... [39.463s] Deallocating buffers... [0.017s] Loading trace points... [0.169s] Sorting trace points... [1.503s] Computing alignments... [39.019s] Deallocating buffers... [0.02s] Loading trace points... [0.105s] Sorting trace points... [1.132s] Computing alignments... [40.421s] Deallocating buffers... [0.019s] Loading trace points... [0.144s] Sorting trace points... [1.582s] Computing alignments... [41.007s] Deallocating buffers... [0.018s] Loading trace points... [0.129s] Sorting trace points... [1.668s] Computing alignments... [41.21s] Deallocating buffers... [0.018s] Loading trace points... [0s] Sorting trace points... [1.671s] Computing alignments... [40.864s] Deallocating buffers... [0.095s] Loading trace points... [0s] [344.704s] Deallocating reference... [0.059s] Loading reference sequences... [31.599s] Masking reference... [32.195s] Initializing dictionary... [0.077s] Initializing temporary storage... [0.008s] Building reference histograms... [32.598s] Allocating buffers... [0.001s] Processing query block 1, reference block 3/14, shape 1/2, index chunk 1/4. Building reference seed array... [9.802s] Building query seed array... [1.416s] Computing hash join... [6.091s] Masking low complexity seeds... [0.174s] Searching alignments... [54.751s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.647s] Building query seed array... [2.031s] Computing hash join... [6.051s] Masking low complexity seeds... [0.176s] Searching alignments... [39.224s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.048s] Building query seed array... [1.875s] Computing hash join... [6.454s] Masking low complexity seeds... [0.287s] Searching alignments... [30.773s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 1/2, index chunk 4/4. Building reference seed array... [9.924s] Building query seed array... [1.541s] Computing hash join... [6.24s] Masking low complexity seeds... [0.181s] Searching alignments... [25.942s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.059s] Building query seed array... [1.494s] Computing hash join... [5.924s] Masking low complexity seeds... [0.164s] Searching alignments... [27.135s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.397s] Building query seed array... [1.657s] Computing hash join... [6.136s] Masking low complexity seeds... [0.173s] Searching alignments... [22.106s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.97s] Building query seed array... [1.769s] Computing hash join... [6.108s] Masking low complexity seeds... [0.173s] Searching alignments... [25.732s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.058s] Building query seed array... [1.504s] Computing hash join... [6.085s] Masking low complexity seeds... [0.176s] Searching alignments... [20.893s] Deallocating memory... [0s] Deallocating buffers... [0.754s] Clearing query masking... [1.099s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [10.242s] Sorting trace points... [1.256s] Computing alignments... [39.031s] Deallocating buffers... [0.019s] Loading trace points... [0.103s] Sorting trace points... [1.484s] Computing alignments... [39.457s] Deallocating buffers... [0.023s] Loading trace points... [0.143s] Sorting trace points... [1.541s] Computing alignments... [39.674s] Deallocating buffers... [0.017s] Loading trace points... [0.13s] Sorting trace points... [1.478s] Computing alignments... [39.205s] Deallocating buffers... [0.017s] Loading trace points... [0.152s] Sorting trace points... [1.614s] Computing alignments... [40.541s] Deallocating buffers... [0.021s] Loading trace points... [0.153s] Sorting trace points... [1.603s] Computing alignments... [41.149s] Deallocating buffers... [0.018s] Loading trace points... [0.14s] Sorting trace points... [1.343s] Computing alignments... [41.392s] Deallocating buffers... [0.019s] Loading trace points... [0s] Sorting trace points... [1.537s] Computing alignments... [40.953s] Deallocating buffers... [0.018s] Loading trace points... [0s] [344.753s] Deallocating reference... [0.065s] Loading reference sequences... [29.353s] Masking reference... [30.96s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.007s] Building reference histograms... [32.599s] Allocating buffers... [0s] Processing query block 1, reference block 4/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.554s] Building query seed array... [1.459s] Computing hash join... [5.814s] Masking low complexity seeds... [0.202s] Searching alignments... [54.935s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.184s] Building query seed array... [1.97s] Computing hash join... [6.296s] Masking low complexity seeds... [0.181s] Searching alignments... [37.578s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.806s] Building query seed array... [1.911s] Computing hash join... [6.592s] Masking low complexity seeds... [0.192s] Searching alignments... [29.892s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.259s] Building query seed array... [1.563s] Computing hash join... [6.381s] Masking low complexity seeds... [0.193s] Searching alignments... [25.803s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 2/2, index chunk 1/4. Building reference seed array... [9.828s] Building query seed array... [1.32s] Computing hash join... [5.936s] Masking low complexity seeds... [0.176s] Searching alignments... [26.933s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.22s] Building query seed array... [1.601s] Computing hash join... [6.181s] Masking low complexity seeds... [0.177s] Searching alignments... [21.164s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.445s] Building query seed array... [1.696s] Computing hash join... [6.256s] Masking low complexity seeds... [0.178s] Searching alignments... [24.836s] Deallocating memory... [0.025s] Processing query block 1, reference block 4/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.006s] Building query seed array... [1.387s] Computing hash join... [6.134s] Masking low complexity seeds... [0.169s] Searching alignments... [20.531s] Deallocating memory... [0s] Deallocating buffers... [1.041s] Clearing query masking... [1.086s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [8.674s] Sorting trace points... [1.606s] Computing alignments... [39.38s] Deallocating buffers... [0.017s] Loading trace points... [0.108s] Sorting trace points... [1.373s] Computing alignments... [39.406s] Deallocating buffers... [0.023s] Loading trace points... [0.132s] Sorting trace points... [1.48s] Computing alignments... [39.591s] Deallocating buffers... [0.018s] Loading trace points... [0.117s] Sorting trace points... [1.212s] Computing alignments... [39.296s] Deallocating buffers... [0.019s] Loading trace points... [0.137s] Sorting trace points... [1.112s] Computing alignments... [40.533s] Deallocating buffers... [0.019s] Loading trace points... [0.169s] Sorting trace points... [1.603s] Computing alignments... [41.178s] Deallocating buffers... [0.018s] Loading trace points... [0.172s] Sorting trace points... [1.646s] Computing alignments... [41.404s] Deallocating buffers... [0.022s] Loading trace points... [0s] Sorting trace points... [1.784s] Computing alignments... [41.027s] Deallocating buffers... [0.168s] Loading trace points... [0s] [343.669s] Deallocating reference... [0.061s] Loading reference sequences... [31.978s] Masking reference... [30.947s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.008s] Building reference histograms... [32.966s] Allocating buffers... [0s] Processing query block 1, reference block 5/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.202s] Building query seed array... [1.386s] Computing hash join... [6.284s] Masking low complexity seeds... [0.208s] Searching alignments... [54.564s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.698s] Building query seed array... [2.018s] Computing hash join... [6.232s] Masking low complexity seeds... [0.183s] Searching alignments... [37.911s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.187s] Building query seed array... [1.876s] Computing hash join... [6.655s] Masking low complexity seeds... [0.275s] Searching alignments... [29.262s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.115s] Building query seed array... [1.499s] Computing hash join... [6.403s] Masking low complexity seeds... [0.194s] Searching alignments... [26.01s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.428s] Building query seed array... [1.333s] Computing hash join... [5.926s] Masking low complexity seeds... [0.174s] Searching alignments... [26.377s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.665s] Building query seed array... [1.721s] Computing hash join... [6.641s] Masking low complexity seeds... [0.17s] Searching alignments... [21.177s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.621s] Building query seed array... [1.719s] Computing hash join... [6.022s] Masking low complexity seeds... [0.172s] Searching alignments... [24.528s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 2/2, index chunk 4/4. Building reference seed array... [9.976s] Building query seed array... [1.424s] Computing hash join... [6.446s] Masking low complexity seeds... [0.17s] Searching alignments... [20.531s] Deallocating memory... [0s] Deallocating buffers... [0.995s] Clearing query masking... [1.115s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [8.783s] Sorting trace points... [1.611s] Computing alignments... [39.188s] Deallocating buffers... [0.017s] Loading trace points... [0.103s] Sorting trace points... [1.528s] Computing alignments... [39.197s] Deallocating buffers... [0.017s] Loading trace points... [0.076s] Sorting trace points... [1.528s] Computing alignments... [39.569s] Deallocating buffers... [0.016s] Loading trace points... [0.212s] Sorting trace points... [1.288s] Computing alignments... [39.122s] Deallocating buffers... [0.017s] Loading trace points... [0.147s] Sorting trace points... [1.28s] Computing alignments... [40.466s] Deallocating buffers... [0.02s] Loading trace points... [0.143s] Sorting trace points... [1.629s] Computing alignments... [41.082s] Deallocating buffers... [0.022s] Loading trace points... [0.165s] Sorting trace points... [1.823s] Computing alignments... [41.333s] Deallocating buffers... [0.199s] Loading trace points... [0s] Sorting trace points... [1.378s] Computing alignments... [40.954s] Deallocating buffers... [0.021s] Loading trace points... [0s] [343.234s] Deallocating reference... [0.057s] Loading reference sequences... [29.404s] Masking reference... [30.909s] Initializing dictionary... [0.077s] Initializing temporary storage... [0.007s] Building reference histograms... [32.713s] Allocating buffers... [0s] Processing query block 1, reference block 6/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.425s] Building query seed array... [1.45s] Computing hash join... [6.387s] Masking low complexity seeds... [0.186s] Searching alignments... [53.702s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.628s] Building query seed array... [2.05s] Computing hash join... [6.305s] Masking low complexity seeds... [0.179s] Searching alignments... [37.647s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.353s] Building query seed array... [1.971s] Computing hash join... [6.687s] Masking low complexity seeds... [0.236s] Searching alignments... [29.801s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.047s] Building query seed array... [1.55s] Computing hash join... [6.384s] Masking low complexity seeds... [0.183s] Searching alignments... [25.138s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.427s] Building query seed array... [1.451s] Computing hash join... [6.038s] Masking low complexity seeds... [0.179s] Searching alignments... [25.381s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.228s] Building query seed array... [1.641s] Computing hash join... [6.589s] Masking low complexity seeds... [0.229s] Searching alignments... [20.674s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.436s] Building query seed array... [1.69s] Computing hash join... [6.047s] Masking low complexity seeds... [0.179s] Searching alignments... [24.142s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.114s] Building query seed array... [1.423s] Computing hash join... [6.469s] Masking low complexity seeds... [0.193s] Searching alignments... [19.902s] Deallocating memory... [0s] Deallocating buffers... [1.023s] Clearing query masking... [1.227s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [8.824s] Sorting trace points... [1.603s] Computing alignments... [38.921s] Deallocating buffers... [0.018s] Loading trace points... [0.161s] Sorting trace points... [1.218s] Computing alignments... [38.725s] Deallocating buffers... [0.019s] Loading trace points... [0.185s] Sorting trace points... [1.235s] Computing alignments... [39.02s] Deallocating buffers... [0.019s] Loading trace points... [0.136s] Sorting trace points... [1.588s] Computing alignments... [38.675s] Deallocating buffers... [0.017s] Loading trace points... [0.135s] Sorting trace points... [1.625s] Computing alignments... [40.319s] Deallocating buffers... [0.118s] Loading trace points... [0.222s] Sorting trace points... [1.611s] Computing alignments... [40.734s] Deallocating buffers... [0.042s] Loading trace points... [0.144s] Sorting trace points... [1.672s] Computing alignments... [40.895s] Deallocating buffers... [0.121s] Loading trace points... [0s] Sorting trace points... [1.606s] Computing alignments... [40.501s] Deallocating buffers... [0.018s] Loading trace points... [0s] [340.34s] Deallocating reference... [0.064s] Loading reference sequences... [29.936s] Masking reference... [30.903s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.007s] Building reference histograms... [32.67s] Allocating buffers... [0s] Processing query block 1, reference block 7/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.64s] Building query seed array... [1.441s] Computing hash join... [6.283s] Masking low complexity seeds... [0.193s] Searching alignments... [54.086s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.768s] Building query seed array... [1.973s] Computing hash join... [6.451s] Masking low complexity seeds... [0.191s] Searching alignments... [38.29s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.877s] Building query seed array... [1.855s] Computing hash join... [6.827s] Masking low complexity seeds... [0.256s] Searching alignments... [30.137s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.429s] Building query seed array... [1.556s] Computing hash join... [6.454s] Masking low complexity seeds... [0.181s] Searching alignments... [25.977s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.281s] Building query seed array... [1.487s] Computing hash join... [5.954s] Masking low complexity seeds... [0.163s] Searching alignments... [27.44s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.693s] Building query seed array... [1.611s] Computing hash join... [6.107s] Masking low complexity seeds... [0.174s] Searching alignments... [22.632s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.301s] Building query seed array... [1.773s] Computing hash join... [6.334s] Masking low complexity seeds... [0.195s] Searching alignments... [24.428s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.115s] Building query seed array... [1.398s] Computing hash join... [5.985s] Masking low complexity seeds... [0.167s] Searching alignments... [21.083s] Deallocating memory... [0s] Deallocating buffers... [1.184s] Clearing query masking... [1.11s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [8.542s] Sorting trace points... [1.579s] Computing alignments... [39.407s] Deallocating buffers... [0.018s] Loading trace points... [0.138s] Sorting trace points... [1.379s] Computing alignments... [39.391s] Deallocating buffers... [0.017s] Loading trace points... [0.129s] Sorting trace points... [1.233s] Computing alignments... [39.532s] Deallocating buffers... [0.019s] Loading trace points... [1.266s] Sorting trace points... [1.577s] Computing alignments... [39.284s] Deallocating buffers... [0.017s] Loading trace points... [0.132s] Sorting trace points... [1.283s] Computing alignments... [40.578s] Deallocating buffers... [0.02s] Loading trace points... [0.147s] Sorting trace points... [1.73s] Computing alignments... [41.183s] Deallocating buffers... [0.103s] Loading trace points... [0.134s] Sorting trace points... [1.613s] Computing alignments... [41.359s] Deallocating buffers... [0.037s] Loading trace points... [0s] Sorting trace points... [1.6s] Computing alignments... [40.736s] Deallocating buffers... [0.022s] Loading trace points... [0s] [344.45s] Deallocating reference... [0.064s] Loading reference sequences... [32.573s] Masking reference... [31.059s] Initializing dictionary... [0.077s] Initializing temporary storage... [0.008s] Building reference histograms... [32.632s] Allocating buffers... [0.001s] Processing query block 1, reference block 8/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.282s] Building query seed array... [1.398s] Computing hash join... [5.603s] Masking low complexity seeds... [0.193s] Searching alignments... [55.413s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.846s] Building query seed array... [2.044s] Computing hash join... [6.406s] Masking low complexity seeds... [0.197s] Searching alignments... [38.718s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 1/2, index chunk 3/4. Building reference seed array... [14.22s] Building query seed array... [1.998s] Computing hash join... [6.848s] Masking low complexity seeds... [0.175s] Searching alignments... [30.673s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.298s] Building query seed array... [1.655s] Computing hash join... [6.516s] Masking low complexity seeds... [0.23s] Searching alignments... [25.584s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.325s] Building query seed array... [1.394s] Computing hash join... [6.133s] Masking low complexity seeds... [0.181s] Searching alignments... [26.425s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.45s] Building query seed array... [1.659s] Computing hash join... [6.142s] Masking low complexity seeds... [0.168s] Searching alignments... [21.932s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.234s] Building query seed array... [1.7s] Computing hash join... [6.394s] Masking low complexity seeds... [0.247s] Searching alignments... [24.777s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.433s] Building query seed array... [1.359s] Computing hash join... [6.154s] Masking low complexity seeds... [0.186s] Searching alignments... [20.656s] Deallocating memory... [0s] Deallocating buffers... [1.266s] Clearing query masking... [1.113s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [8.555s] Sorting trace points... [1.593s] Computing alignments... [39.274s] Deallocating buffers... [0.019s] Loading trace points... [0.126s] Sorting trace points... [1.31s] Computing alignments... [39.238s] Deallocating buffers... [0.02s] Loading trace points... [0.143s] Sorting trace points... [1.344s] Computing alignments... [39.468s] Deallocating buffers... [0.018s] Loading trace points... [0.154s] Sorting trace points... [1.468s] Computing alignments... [38.994s] Deallocating buffers... [0.017s] Loading trace points... [0.13s] Sorting trace points... [1.542s] Computing alignments... [40.388s] Deallocating buffers... [0.018s] Loading trace points... [0.136s] Sorting trace points... [1.61s] Computing alignments... [41.133s] Deallocating buffers... [0.018s] Loading trace points... [0.157s] Sorting trace points... [1.662s] Computing alignments... [41.254s] Deallocating buffers... [0.018s] Loading trace points... [0s] Sorting trace points... [1.487s] Computing alignments... [40.871s] Deallocating buffers... [0.018s] Loading trace points... [0s] [342.471s] Deallocating reference... [0.056s] Loading reference sequences... [29.333s] Masking reference... [32.032s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.006s] Building reference histograms... [32.473s] Allocating buffers... [0s] Processing query block 1, reference block 9/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.313s] Building query seed array... [1.433s] Computing hash join... [6.305s] Masking low complexity seeds... [0.179s] Searching alignments... [55.927s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.497s] Building query seed array... [1.991s] Computing hash join... [6.232s] Masking low complexity seeds... [0.19s] Searching alignments... [39.111s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.714s] Building query seed array... [1.848s] Computing hash join... [6.655s] Masking low complexity seeds... [0.31s] Searching alignments... [29.917s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.448s] Building query seed array... [1.524s] Computing hash join... [6.363s] Masking low complexity seeds... [0.209s] Searching alignments... [25.218s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.368s] Building query seed array... [1.431s] Computing hash join... [6.076s] Masking low complexity seeds... [0.177s] Searching alignments... [26.925s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.457s] Building query seed array... [1.617s] Computing hash join... [6.598s] Masking low complexity seeds... [0.222s] Searching alignments... [21.112s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.481s] Building query seed array... [1.677s] Computing hash join... [6.003s] Masking low complexity seeds... [0.182s] Searching alignments... [24.264s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.091s] Building query seed array... [1.393s] Computing hash join... [6.508s] Masking low complexity seeds... [0.206s] Searching alignments... [20.453s] Deallocating memory... [0s] Deallocating buffers... [1.264s] Clearing query masking... [1.114s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [8.695s] Sorting trace points... [1.592s] Computing alignments... [39.159s] Deallocating buffers... [0.019s] Loading trace points... [0.107s] Sorting trace points... [1.696s] Computing alignments... [39.46s] Deallocating buffers... [0.259s] Loading trace points... [0.284s] Sorting trace points... [1.382s] Computing alignments... [39.149s] Deallocating buffers... [0.018s] Loading trace points... [0.13s] Sorting trace points... [1.457s] Computing alignments... [38.785s] Deallocating buffers... [0.021s] Loading trace points... [0.143s] Sorting trace points... [1.583s] Computing alignments... [40.214s] Deallocating buffers... [0.017s] Loading trace points... [0.135s] Sorting trace points... [1.297s] Computing alignments... [40.758s] Deallocating buffers... [0.02s] Loading trace points... [0.141s] Sorting trace points... [1.649s] Computing alignments... [41.025s] Deallocating buffers... [0.083s] Loading trace points... [0s] Sorting trace points... [1.304s] Computing alignments... [40.638s] Deallocating buffers... [0.019s] Loading trace points... [0s] [341.513s] Deallocating reference... [0.057s] Loading reference sequences... [29.865s] Masking reference... [32.101s] Initializing dictionary... [0.077s] Initializing temporary storage... [0.006s] Building reference histograms... [32.382s] Allocating buffers... [0s] Processing query block 1, reference block 10/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.268s] Building query seed array... [1.402s] Computing hash join... [6.456s] Masking low complexity seeds... [0.187s] Searching alignments... [55.852s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.938s] Building query seed array... [1.958s] Computing hash join... [6.429s] Masking low complexity seeds... [0.238s] Searching alignments... [39.015s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 1/2, index chunk 3/4. Building reference seed array... [14.05s] Building query seed array... [1.884s] Computing hash join... [5.906s] Masking low complexity seeds... [0.178s] Searching alignments... [30.374s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.095s] Building query seed array... [1.658s] Computing hash join... [6.122s] Masking low complexity seeds... [0.179s] Searching alignments... [25.992s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.034s] Building query seed array... [1.385s] Computing hash join... [6.275s] Masking low complexity seeds... [0.181s] Searching alignments... [27.169s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.402s] Building query seed array... [1.662s] Computing hash join... [5.831s] Masking low complexity seeds... [0.173s] Searching alignments... [20.79s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 2/2, index chunk 3/4. Building reference seed array... [14.024s] Building query seed array... [1.69s] Computing hash join... [6.541s] Masking low complexity seeds... [0.231s] Searching alignments... [25.358s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.127s] Building query seed array... [1.433s] Computing hash join... [5.909s] Masking low complexity seeds... [0.174s] Searching alignments... [21.004s] Deallocating memory... [0s] Deallocating buffers... [1.317s] Clearing query masking... [1.09s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [9.166s] Sorting trace points... [1.562s] Computing alignments... [39.208s] Deallocating buffers... [0.019s] Loading trace points... [0.112s] Sorting trace points... [1.495s] Computing alignments... [39.114s] Deallocating buffers... [0.017s] Loading trace points... [0.072s] Sorting trace points... [1.544s] Computing alignments... [39.422s] Deallocating buffers... [0.021s] Loading trace points... [0.146s] Sorting trace points... [1.186s] Computing alignments... [39.007s] Deallocating buffers... [0.019s] Loading trace points... [0.145s] Sorting trace points... [1.568s] Computing alignments... [40.388s] Deallocating buffers... [0.018s] Loading trace points... [0.146s] Sorting trace points... [1.614s] Computing alignments... [41.019s] Deallocating buffers... [0.018s] Loading trace points... [0.132s] Sorting trace points... [1.307s] Computing alignments... [41.249s] Deallocating buffers... [0.02s] Loading trace points... [0s] Sorting trace points... [1.573s] Computing alignments... [40.887s] Deallocating buffers... [0.018s] Loading trace points... [0s] [342.557s] Deallocating reference... [0.057s] Loading reference sequences... [29.525s] Masking reference... [30.902s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.006s] Building reference histograms... [32.098s] Allocating buffers... [0s] Processing query block 1, reference block 11/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.409s] Building query seed array... [1.418s] Computing hash join... [5.762s] Masking low complexity seeds... [0.194s] Searching alignments... [54.736s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 1/2, index chunk 2/4. Building reference seed array... [13.513s] Building query seed array... [2.05s] Computing hash join... [5.736s] Masking low complexity seeds... [0.19s] Searching alignments... [37.398s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 1/2, index chunk 3/4. Building reference seed array... [14.08s] Building query seed array... [1.93s] Computing hash join... [5.718s] Masking low complexity seeds... [0.243s] Searching alignments... [29.421s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.839s] Building query seed array... [1.473s] Computing hash join... [5.589s] Masking low complexity seeds... [0.241s] Searching alignments... [25.886s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.302s] Building query seed array... [1.421s] Computing hash join... [5.383s] Masking low complexity seeds... [0.178s] Searching alignments... [26.139s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.962s] Building query seed array... [1.654s] Computing hash join... [5.798s] Masking low complexity seeds... [0.227s] Searching alignments... [20.322s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 2/2, index chunk 3/4. Building reference seed array... [14.004s] Building query seed array... [1.781s] Computing hash join... [5.4s] Masking low complexity seeds... [0.172s] Searching alignments... [24.29s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.532s] Building query seed array... [1.405s] Computing hash join... [5.779s] Masking low complexity seeds... [0.244s] Searching alignments... [19.765s] Deallocating memory... [0s] Deallocating buffers... [1.889s] Clearing query masking... [1.046s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [8.597s] Sorting trace points... [1.603s] Computing alignments... [39.502s] Deallocating buffers... [0.019s] Loading trace points... [0.055s] Sorting trace points... [1.539s] Computing alignments... [39.003s] Deallocating buffers... [0.224s] Loading trace points... [0.178s] Sorting trace points... [1.484s] Computing alignments... [39.144s] Deallocating buffers... [0.017s] Loading trace points... [0.115s] Sorting trace points... [1.503s] Computing alignments... [38.758s] Deallocating buffers... [0.017s] Loading trace points... [0.136s] Sorting trace points... [1.634s] Computing alignments... [40.055s] Deallocating buffers... [0.017s] Loading trace points... [0.125s] Sorting trace points... [1.526s] Computing alignments... [40.783s] Deallocating buffers... [0.112s] Loading trace points... [0.119s] Sorting trace points... [1.458s] Computing alignments... [40.942s] Deallocating buffers... [0.022s] Loading trace points... [0s] Sorting trace points... [1.27s] Computing alignments... [40.443s] Deallocating buffers... [0.02s] Loading trace points... [0s] [340.587s] Deallocating reference... [0.058s] Loading reference sequences... [30.636s] Masking reference... [30.978s] Initializing dictionary... [0.077s] Initializing temporary storage... [0.006s] Building reference histograms... [32.679s] Allocating buffers... [0s] Processing query block 1, reference block 12/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.362s] Building query seed array... [1.438s] Computing hash join... [6.388s] Masking low complexity seeds... [0.186s] Searching alignments... [52.937s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.254s] Building query seed array... [1.979s] Computing hash join... [6.175s] Masking low complexity seeds... [0.198s] Searching alignments... [37.444s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 1/2, index chunk 3/4. Building reference seed array... [14.129s] Building query seed array... [1.834s] Computing hash join... [6.344s] Masking low complexity seeds... [0.185s] Searching alignments... [29.542s] Deallocating memory... [0.003s] Processing query block 1, reference block 12/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.276s] Building query seed array... [1.561s] Computing hash join... [6.098s] Masking low complexity seeds... [0.196s] Searching alignments... [25.863s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.715s] Building query seed array... [1.381s] Computing hash join... [6.591s] Masking low complexity seeds... [0.215s] Searching alignments... [26.283s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.437s] Building query seed array... [1.599s] Computing hash join... [6.223s] Masking low complexity seeds... [0.188s] Searching alignments... [21.285s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.31s] Building query seed array... [1.739s] Computing hash join... [6.162s] Masking low complexity seeds... [0.172s] Searching alignments... [23.941s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.221s] Building query seed array... [1.356s] Computing hash join... [6.369s] Masking low complexity seeds... [0.175s] Searching alignments... [20.721s] Deallocating memory... [0s] Deallocating buffers... [1.386s] Clearing query masking... [1.095s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [8.922s] Sorting trace points... [1.626s] Computing alignments... [39.189s] Deallocating buffers... [0.019s] Loading trace points... [0.127s] Sorting trace points... [1.603s] Computing alignments... [39.295s] Deallocating buffers... [0.017s] Loading trace points... [0.111s] Sorting trace points... [1.421s] Computing alignments... [39.506s] Deallocating buffers... [0.021s] Loading trace points... [0.123s] Sorting trace points... [1.546s] Computing alignments... [39.109s] Deallocating buffers... [0.035s] Loading trace points... [0.135s] Sorting trace points... [1.567s] Computing alignments... [40.507s] Deallocating buffers... [0.017s] Loading trace points... [0.137s] Sorting trace points... [1.32s] Computing alignments... [41.055s] Deallocating buffers... [0.019s] Loading trace points... [0.89s] Sorting trace points... [1.668s] Computing alignments... [41.358s] Deallocating buffers... [0.018s] Loading trace points... [0s] Sorting trace points... [1.441s] Computing alignments... [40.775s] Deallocating buffers... [0.018s] Loading trace points... [0s] [343.864s] Deallocating reference... [0.06s] Loading reference sequences... [33.347s] Masking reference... [31.147s] Initializing dictionary... [0.077s] Initializing temporary storage... [0.006s] Building reference histograms... [32.801s] Allocating buffers... [0s] Processing query block 1, reference block 13/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.074s] Building query seed array... [1.436s] Computing hash join... [6.449s] Masking low complexity seeds... [0.192s] Searching alignments... [53.64s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.864s] Building query seed array... [2.015s] Computing hash join... [6.4s] Masking low complexity seeds... [0.211s] Searching alignments... [40.992s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.986s] Building query seed array... [1.89s] Computing hash join... [6.709s] Masking low complexity seeds... [0.23s] Searching alignments... [30.918s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.463s] Building query seed array... [1.545s] Computing hash join... [6.428s] Masking low complexity seeds... [0.182s] Searching alignments... [26.529s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.112s] Building query seed array... [1.423s] Computing hash join... [5.977s] Masking low complexity seeds... [0.173s] Searching alignments... [27.647s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 2/2, index chunk 2/4. Building reference seed array... [13.117s] Building query seed array... [1.657s] Computing hash join... [6.212s] Masking low complexity seeds... [0.184s] Searching alignments... [21.309s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.956s] Building query seed array... [1.775s] Computing hash join... [6.26s] Masking low complexity seeds... [0.172s] Searching alignments... [25.164s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.22s] Building query seed array... [1.479s] Computing hash join... [5.937s] Masking low complexity seeds... [0.166s] Searching alignments... [21.084s] Deallocating memory... [0s] Deallocating buffers... [1.427s] Clearing query masking... [1.097s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [8.963s] Sorting trace points... [1.629s] Computing alignments... [39.151s] Deallocating buffers... [0.017s] Loading trace points... [0.114s] Sorting trace points... [1.622s] Computing alignments... [39.475s] Deallocating buffers... [0.103s] Loading trace points... [0.068s] Sorting trace points... [1.287s] Computing alignments... [39.39s] Deallocating buffers... [0.018s] Loading trace points... [0.132s] Sorting trace points... [1.264s] Computing alignments... [39.092s] Deallocating buffers... [0.019s] Loading trace points... [0.154s] Sorting trace points... [1.601s] Computing alignments... [40.379s] Deallocating buffers... [0.021s] Loading trace points... [0.208s] Sorting trace points... [1.76s] Computing alignments... [41.222s] Deallocating buffers... [0.193s] Loading trace points... [0.169s] Sorting trace points... [1.494s] Computing alignments... [41.386s] Deallocating buffers... [0.021s] Loading trace points... [0s] Sorting trace points... [1.712s] Computing alignments... [40.908s] Deallocating buffers... [0.14s] Loading trace points... [0s] [344.032s] Deallocating reference... [0.063s] Loading reference sequences... [25.281s] Masking reference... [25.001s] Initializing dictionary... [0.063s] Initializing temporary storage... [0.006s] Building reference histograms... [26.647s] Allocating buffers... [0.001s] Processing query block 1, reference block 14/14, shape 1/2, index chunk 1/4. Building reference seed array... [8.097s] Building query seed array... [1.351s] Computing hash join... [4.324s] Masking low complexity seeds... [0.167s] Searching alignments... [41.646s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 1/2, index chunk 2/4. Building reference seed array... [10.727s] Building query seed array... [2.014s] Computing hash join... [4.403s] Masking low complexity seeds... [0.182s] Searching alignments... [29.395s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 1/2, index chunk 3/4. Building reference seed array... [11.203s] Building query seed array... [1.921s] Computing hash join... [4.324s] Masking low complexity seeds... [0.171s] Searching alignments... [24.341s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 1/2, index chunk 4/4. Building reference seed array... [8.21s] Building query seed array... [1.54s] Computing hash join... [4.263s] Masking low complexity seeds... [0.211s] Searching alignments... [21.317s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 2/2, index chunk 1/4. Building reference seed array... [8.384s] Building query seed array... [1.374s] Computing hash join... [4.077s] Masking low complexity seeds... [0.166s] Searching alignments... [22.392s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 2/2, index chunk 2/4. Building reference seed array... [10.565s] Building query seed array... [1.644s] Computing hash join... [4.128s] Masking low complexity seeds... [0.174s] Searching alignments... [17.889s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 2/2, index chunk 3/4. Building reference seed array... [10.93s] Building query seed array... [1.784s] Computing hash join... [4.12s] Masking low complexity seeds... [0.16s] Searching alignments... [19.19s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 2/2, index chunk 4/4. Building reference seed array... [8.155s] Building query seed array... [1.371s] Computing hash join... [4.533s] Masking low complexity seeds... [0.162s] Searching alignments... [16.804s] Deallocating memory... [0s] Deallocating buffers... [0.622s] Clearing query masking... [1.045s] Opening temporary output file... [0.019s] Computing alignments... Loading trace points... [11.099s] Sorting trace points... [2.011s] Computing alignments... [46.631s] Deallocating buffers... [0.02s] Loading trace points... [0.256s] Sorting trace points... [1.69s] Computing alignments... [47.031s] Deallocating buffers... [0.024s] Loading trace points... [0.175s] Sorting trace points... [1.822s] Computing alignments... [46.959s] Deallocating buffers... [0.103s] Loading trace points... [0.204s] Sorting trace points... [1.792s] Computing alignments... [49.066s] Deallocating buffers... [0.025s] Loading trace points... [0.042s] Sorting trace points... [1.615s] Computing alignments... [48.931s] Deallocating buffers... [0.023s] Loading trace points... [0s] Sorting trace points... [0.535s] Computing alignments... [16.222s] Deallocating buffers... [0.008s] Loading trace points... [0s] [276.449s] Deallocating reference... [0.047s] Loading reference sequences... [0.091s] Deallocating buffers... [0s] Joining output blocks... Joining output blocks... [1352.86s] [1352.86s] Deallocating queries... [0.058s] Loading query sequences... [0s] Closing the input file... [0s] Closing the output file... Loading dictionary... [3.332s] [4.186s] Closing the database... [0s] Cleaning up... [0s] Total time = 13031.2s Reported 1535719165 pairwise alignments, 1535719165 HSPs. 8540068 queries aligned. DIAMOND BLASTx on /gscratch/srlab/sam/data/P_verrucosa/RNAseq/E5_R1.fastp-trim.20230215.fq.gz complete: E5_R1.blastx.meganized.daa Now MEGANizing E5_R1.blastx.meganized.daa Version MEGAN Community Edition (version 6.22.0, built 19 Feb 2022) Author(s) Daniel H. Huson Copyright (C) 2022 Daniel H. Huson. This program comes with ABSOLUTELY NO WARRANTY. Java version: 17.0.2 Functional classifications to use: EC, EGGNOG, GTDB, INTERPRO2GO, SEED Loading ncbi.map: 2,396,736 Loading ncbi.tre: 2,396,740 Loading ec.map: 8,200 Loading ec.tre: 8,204 Loading eggnog.map: 30,875 Loading eggnog.tre: 30,986 Loading gtdb.map: 240,103 Loading gtdb.tre: 240,107 Loading interpro2go.map: 14,242 Loading interpro2go.tre: 28,907 Loading seed.map: 961 Loading seed.tre: 962 Meganizing: E5_R1.blastx.meganized.daa Meganizing init Annotating DAA file using FAST mode (accession database and first accession per line) Annotating references 10% 20% 30% 40% 50% 60% 100% (420.2s) Writing 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (1.1s) Binning reads Initializing... Initializing binning... Using 'Naive LCA' algorithm for binning: Taxonomy Using Best-Hit algorithm for binning: SEED Using Best-Hit algorithm for binning: EGGNOG Using 'Naive LCA' algorithm for binning: GTDB Using Best-Hit algorithm for binning: EC Using Best-Hit algorithm for binning: INTERPRO2GO Binning reads... Binning reads Analyzing alignments 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (3,011.3s) Total reads: 8,540,068 With hits: 8,540,068 Alignments: 1,533,654,777 Assig. Taxonomy: 7,901,948 Assig. SEED: 66,193 Assig. EGGNOG: 27,576 Assig. GTDB: 224,592 Assig. EC: 1,263,114 Assig. INTERPRO2GO: 700,347 MinSupport set to: 4270 Binning reads Applying min-support & disabled filter to Taxonomy... 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (0.4s) Min-supp. changes: 3,081 Binning reads Applying min-support & disabled filter to GTDB... 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (4.9s) Min-supp. changes: 2,159 Binning reads Writing classification tables 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (11.4s) Binning reads Syncing 100% (0.3s) Class. Taxonomy: 65 Class. SEED: 456 Class. EGGNOG: 1,555 Class. GTDB: 17 Class. EC: 2,146 Class. INTERPRO2GO: 7,350 Total time: 3,457s Peak memory: 33.2 of 195.3G MEGANization of E5_R1.blastx.meganized.daa completed. Generating MD5 checksum for /gscratch/srlab/sam/data/P_verrucosa/RNAseq/E5_R2.fastp-trim.20230215.fq.gz... 9417a69e81c6a9793bccc7899e5e564f /gscratch/srlab/sam/data/P_verrucosa/RNAseq/E5_R2.fastp-trim.20230215.fq.gz Running DIAMOND BLASTx on /gscratch/srlab/sam/data/P_verrucosa/RNAseq/E5_R2.fastp-trim.20230215.fq.gz. diamond v2.1.1.155 (C) Max Planck Society for the Advancement of Science Documentation, support and updates available at http://www.diamondsearch.org Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021) #CPU threads: 40 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: Percentage range of top alignment score to report hits: 5 Opening the database... [0.293s] Database: /gscratch/srlab/blastdbs/20230215-ncbi-nr/20230215-ncbi-nr.dmnd (type: Diamond database, sequences: 526308523, letters: 207134680681) Block size = 15000000000 Opening the input file... [0.715s] Opening the output file... [0.025s] Loading query sequences... [52.033s] Masking queries... [12.784s] Algorithm: Double-indexed Building query histograms... [9.502s] Loading reference sequences... [33.737s] Masking reference... [31.054s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.008s] Building reference histograms... [32.707s] Allocating buffers... [0.001s] Processing query block 1, reference block 1/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.234s] Building query seed array... [1.632s] Computing hash join... [5.827s] Masking low complexity seeds... [0.446s] Searching alignments... [52.848s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 1/2, index chunk 2/4. Building reference seed array... [13.23s] Building query seed array... [1.962s] Computing hash join... [5.686s] Masking low complexity seeds... [0.205s] Searching alignments... [36.923s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.347s] Building query seed array... [1.871s] Computing hash join... [6.09s] Masking low complexity seeds... [0.247s] Searching alignments... [29.664s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.339s] Building query seed array... [1.564s] Computing hash join... [5.973s] Masking low complexity seeds... [0.226s] Searching alignments... [25.975s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 2/2, index chunk 1/4. Building reference seed array... [9.976s] Building query seed array... [1.479s] Computing hash join... [5.429s] Masking low complexity seeds... [0.19s] Searching alignments... [30.769s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.432s] Building query seed array... [1.635s] Computing hash join... [5.575s] Masking low complexity seeds... [0.189s] Searching alignments... [21.101s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.061s] Building query seed array... [1.703s] Computing hash join... [5.694s] Masking low complexity seeds... [0.223s] Searching alignments... [25.796s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 2/2, index chunk 4/4. Building reference seed array... [9.942s] Building query seed array... [1.433s] Computing hash join... [5.529s] Masking low complexity seeds... [0.214s] Searching alignments... [21.063s] Deallocating memory... [0s] Deallocating buffers... [0.985s] Clearing query masking... [1.072s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [8.602s] Sorting trace points... [1.588s] Computing alignments... [39.069s] Deallocating buffers... [0.021s] Loading trace points... [0.148s] Sorting trace points... [1.186s] Computing alignments... [39.125s] Deallocating buffers... [0.019s] Loading trace points... [0.111s] Sorting trace points... [1.52s] Computing alignments... [38.518s] Deallocating buffers... [0.02s] Loading trace points... [0.098s] Sorting trace points... [1.231s] Computing alignments... [38.843s] Deallocating buffers... [0.02s] Loading trace points... [0.109s] Sorting trace points... [1.651s] Computing alignments... [41.377s] Deallocating buffers... [0.022s] Loading trace points... [0.12s] Sorting trace points... [1.36s] Computing alignments... [42.348s] Deallocating buffers... [0.019s] Loading trace points... [0.536s] Sorting trace points... [1.664s] Computing alignments... [42.625s] Deallocating buffers... [0.022s] Loading trace points... [0s] Sorting trace points... [1.604s] Computing alignments... [42.27s] Deallocating buffers... [0.022s] Loading trace points... [0s] [346.044s] Deallocating reference... [0.06s] Loading reference sequences... [29.844s] Masking reference... [31.953s] Initializing dictionary... [0.077s] Initializing temporary storage... [0.007s] Building reference histograms... [32.42s] Allocating buffers... [0.001s] Processing query block 1, reference block 2/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.252s] Building query seed array... [1.434s] Computing hash join... [6.138s] Masking low complexity seeds... [0.21s] Searching alignments... [52.483s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.652s] Building query seed array... [1.919s] Computing hash join... [6.313s] Masking low complexity seeds... [0.201s] Searching alignments... [37.68s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.157s] Building query seed array... [1.794s] Computing hash join... [6.57s] Masking low complexity seeds... [0.255s] Searching alignments... [29.132s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.397s] Building query seed array... [1.609s] Computing hash join... [6.143s] Masking low complexity seeds... [0.205s] Searching alignments... [26.041s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.4s] Building query seed array... [1.515s] Computing hash join... [6.186s] Masking low complexity seeds... [0.199s] Searching alignments... [28.997s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.252s] Building query seed array... [1.621s] Computing hash join... [6.066s] Masking low complexity seeds... [0.198s] Searching alignments... [20.904s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.321s] Building query seed array... [1.72s] Computing hash join... [6.174s] Masking low complexity seeds... [0.193s] Searching alignments... [25.451s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.259s] Building query seed array... [1.315s] Computing hash join... [6.245s] Masking low complexity seeds... [0.2s] Searching alignments... [20.389s] Deallocating memory... [0s] Deallocating buffers... [0.783s] Clearing query masking... [1.105s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [8.781s] Sorting trace points... [1.644s] Computing alignments... [39.103s] Deallocating buffers... [0.018s] Loading trace points... [0.135s] Sorting trace points... [1.216s] Computing alignments... [39.14s] Deallocating buffers... [0.018s] Loading trace points... [0.129s] Sorting trace points... [1.351s] Computing alignments... [38.26s] Deallocating buffers... [0.02s] Loading trace points... [0.113s] Sorting trace points... [1.481s] Computing alignments... [38.629s] Deallocating buffers... [0.017s] Loading trace points... [0.11s] Sorting trace points... [1.642s] Computing alignments... [41.15s] Deallocating buffers... [0.017s] Loading trace points... [0.126s] Sorting trace points... [1.647s] Computing alignments... [41.897s] Deallocating buffers... [0.018s] Loading trace points... [0.121s] Sorting trace points... [1.313s] Computing alignments... [42.339s] Deallocating buffers... [0.02s] Loading trace points... [0s] Sorting trace points... [1.658s] Computing alignments... [41.903s] Deallocating buffers... [0.023s] Loading trace points... [0s] [344.323s] Deallocating reference... [0.057s] Loading reference sequences... [31.979s] Masking reference... [30.98s] Initializing dictionary... [0.077s] Initializing temporary storage... [0.008s] Building reference histograms... [32.589s] Allocating buffers... [0.001s] Processing query block 1, reference block 3/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.512s] Building query seed array... [1.428s] Computing hash join... [6.271s] Masking low complexity seeds... [0.21s] Searching alignments... [55.923s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.291s] Building query seed array... [2.112s] Computing hash join... [6.195s] Masking low complexity seeds... [0.2s] Searching alignments... [38.322s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.685s] Building query seed array... [1.867s] Computing hash join... [6.36s] Masking low complexity seeds... [0.199s] Searching alignments... [31.335s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.266s] Building query seed array... [1.617s] Computing hash join... [6.275s] Masking low complexity seeds... [0.207s] Searching alignments... [25.998s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.293s] Building query seed array... [1.527s] Computing hash join... [6.016s] Masking low complexity seeds... [0.188s] Searching alignments... [30.516s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.316s] Building query seed array... [1.673s] Computing hash join... [6.518s] Masking low complexity seeds... [0.237s] Searching alignments... [21.153s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.09s] Building query seed array... [1.751s] Computing hash join... [6.17s] Masking low complexity seeds... [0.194s] Searching alignments... [26.843s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.138s] Building query seed array... [1.525s] Computing hash join... [6.116s] Masking low complexity seeds... [0.196s] Searching alignments... [21.318s] Deallocating memory... [0s] Deallocating buffers... [0.833s] Clearing query masking... [1.109s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [8.76s] Sorting trace points... [1.628s] Computing alignments... [38.945s] Deallocating buffers... [0.021s] Loading trace points... [0.121s] Sorting trace points... [1.3s] Computing alignments... [39.123s] Deallocating buffers... [0.018s] Loading trace points... [0.131s] Sorting trace points... [1.264s] Computing alignments... [38.388s] Deallocating buffers... [0.017s] Loading trace points... [0.134s] Sorting trace points... [1.48s] Computing alignments... [38.761s] Deallocating buffers... [0.017s] Loading trace points... [0.138s] Sorting trace points... [1.633s] Computing alignments... [41.182s] Deallocating buffers... [0.018s] Loading trace points... [0.141s] Sorting trace points... [1.597s] Computing alignments... [42.108s] Deallocating buffers... [0.018s] Loading trace points... [0.16s] Sorting trace points... [1.581s] Computing alignments... [42.416s] Deallocating buffers... [0.022s] Loading trace points... [0s] Sorting trace points... [1.636s] Computing alignments... [42.043s] Deallocating buffers... [0.018s] Loading trace points... [0s] [345.053s] Deallocating reference... [0.063s] Loading reference sequences... [34.572s] Masking reference... [31.215s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.008s] Building reference histograms... [32.077s] Allocating buffers... [0.001s] Processing query block 1, reference block 4/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.156s] Building query seed array... [1.454s] Computing hash join... [6.192s] Masking low complexity seeds... [0.205s] Searching alignments... [54.018s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.276s] Building query seed array... [2.099s] Computing hash join... [6.376s] Masking low complexity seeds... [0.211s] Searching alignments... [38.232s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.518s] Building query seed array... [1.822s] Computing hash join... [6.308s] Masking low complexity seeds... [0.201s] Searching alignments... [30.26s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.038s] Building query seed array... [1.641s] Computing hash join... [6.315s] Masking low complexity seeds... [0.212s] Searching alignments... [27.48s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.053s] Building query seed array... [1.353s] Computing hash join... [6.076s] Masking low complexity seeds... [0.199s] Searching alignments... [29.155s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.398s] Building query seed array... [1.661s] Computing hash join... [6.48s] Masking low complexity seeds... [0.248s] Searching alignments... [20.854s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.149s] Building query seed array... [1.687s] Computing hash join... [6.172s] Masking low complexity seeds... [0.193s] Searching alignments... [26.156s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.167s] Building query seed array... [1.459s] Computing hash join... [6.063s] Masking low complexity seeds... [0.192s] Searching alignments... [20.786s] Deallocating memory... [0s] Deallocating buffers... [0.842s] Clearing query masking... [1.116s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [9.628s] Sorting trace points... [1.287s] Computing alignments... [39.06s] Deallocating buffers... [0.019s] Loading trace points... [0.151s] Sorting trace points... [1.163s] Computing alignments... [38.936s] Deallocating buffers... [0.019s] Loading trace points... [0.108s] Sorting trace points... [1.471s] Computing alignments... [38.423s] Deallocating buffers... [0.016s] Loading trace points... [0.117s] Sorting trace points... [1.527s] Computing alignments... [38.786s] Deallocating buffers... [0.02s] Loading trace points... [0.151s] Sorting trace points... [1.278s] Computing alignments... [41.373s] Deallocating buffers... [0.02s] Loading trace points... [0.175s] Sorting trace points... [1.409s] Computing alignments... [42.128s] Deallocating buffers... [0.022s] Loading trace points... [0.12s] Sorting trace points... [1.649s] Computing alignments... [42.374s] Deallocating buffers... [0.018s] Loading trace points... [0s] Sorting trace points... [1.607s] Computing alignments... [41.889s] Deallocating buffers... [0.023s] Loading trace points... [0s] [345.195s] Deallocating reference... [0.056s] Loading reference sequences... [30.429s] Masking reference... [30.949s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.008s] Building reference histograms... [32.158s] Allocating buffers... [0s] Processing query block 1, reference block 5/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.583s] Building query seed array... [1.514s] Computing hash join... [6.129s] Masking low complexity seeds... [0.201s] Searching alignments... [53.983s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.813s] Building query seed array... [1.952s] Computing hash join... [6.303s] Masking low complexity seeds... [0.198s] Searching alignments... [37.636s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.375s] Building query seed array... [1.876s] Computing hash join... [6.509s] Masking low complexity seeds... [0.227s] Searching alignments... [31.149s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.185s] Building query seed array... [1.554s] Computing hash join... [6.391s] Masking low complexity seeds... [0.201s] Searching alignments... [27.365s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.64s] Building query seed array... [1.45s] Computing hash join... [6.29s] Masking low complexity seeds... [0.21s] Searching alignments... [28.722s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.458s] Building query seed array... [1.668s] Computing hash join... [6.178s] Masking low complexity seeds... [0.203s] Searching alignments... [20.655s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.213s] Building query seed array... [1.67s] Computing hash join... [6.225s] Masking low complexity seeds... [0.197s] Searching alignments... [25.143s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.368s] Building query seed array... [1.446s] Computing hash join... [6.132s] Masking low complexity seeds... [0.2s] Searching alignments... [21.179s] Deallocating memory... [0s] Deallocating buffers... [0.967s] Clearing query masking... [1.119s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [9.477s] Sorting trace points... [1.638s] Computing alignments... [39.007s] Deallocating buffers... [0.017s] Loading trace points... [0.123s] Sorting trace points... [1.086s] Computing alignments... [39.037s] Deallocating buffers... [0.019s] Loading trace points... [0.134s] Sorting trace points... [1.478s] Computing alignments... [38.432s] Deallocating buffers... [0.017s] Loading trace points... [0.129s] Sorting trace points... [1.504s] Computing alignments... [38.73s] Deallocating buffers... [0.02s] Loading trace points... [1.105s] Sorting trace points... [1.414s] Computing alignments... [41.234s] Deallocating buffers... [0.021s] Loading trace points... [0.145s] Sorting trace points... [1.674s] Computing alignments... [42.068s] Deallocating buffers... [0.018s] Loading trace points... [0.135s] Sorting trace points... [1.717s] Computing alignments... [42.333s] Deallocating buffers... [0.018s] Loading trace points... [0s] Sorting trace points... [1.605s] Computing alignments... [41.887s] Deallocating buffers... [0.023s] Loading trace points... [0s] [346.432s] Deallocating reference... [0.058s] Loading reference sequences... [33.99s] Masking reference... [31.536s] Initializing dictionary... [0.077s] Initializing temporary storage... [0.008s] Building reference histograms... [31.765s] Allocating buffers... [0s] Processing query block 1, reference block 6/14, shape 1/2, index chunk 1/4. Building reference seed array... [9.999s] Building query seed array... [1.379s] Computing hash join... [6.003s] Masking low complexity seeds... [0.219s] Searching alignments... [52.833s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.746s] Building query seed array... [1.985s] Computing hash join... [6.358s] Masking low complexity seeds... [0.203s] Searching alignments... [34.49s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.497s] Building query seed array... [1.857s] Computing hash join... [6.584s] Masking low complexity seeds... [0.21s] Searching alignments... [28.551s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.451s] Building query seed array... [1.518s] Computing hash join... [6.238s] Masking low complexity seeds... [0.211s] Searching alignments... [25.668s] Deallocating memory... [0.017s] Processing query block 1, reference block 6/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.265s] Building query seed array... [1.449s] Computing hash join... [6.285s] Masking low complexity seeds... [0.225s] Searching alignments... [27.741s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.284s] Building query seed array... [1.639s] Computing hash join... [6.422s] Masking low complexity seeds... [0.2s] Searching alignments... [20.864s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.94s] Building query seed array... [1.732s] Computing hash join... [6.037s] Masking low complexity seeds... [0.2s] Searching alignments... [24.629s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.699s] Building query seed array... [1.4s] Computing hash join... [6.245s] Masking low complexity seeds... [0.234s] Searching alignments... [20.138s] Deallocating memory... [0s] Deallocating buffers... [1.195s] Clearing query masking... [1.096s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [8.669s] Sorting trace points... [1.348s] Computing alignments... [38.347s] Deallocating buffers... [0.018s] Loading trace points... [0.122s] Sorting trace points... [1.218s] Computing alignments... [38.662s] Deallocating buffers... [0.019s] Loading trace points... [0.168s] Sorting trace points... [1.207s] Computing alignments... [38.001s] Deallocating buffers... [0.017s] Loading trace points... [0.14s] Sorting trace points... [1.1s] Computing alignments... [38.491s] Deallocating buffers... [0.018s] Loading trace points... [0.121s] Sorting trace points... [1.253s] Computing alignments... [40.932s] Deallocating buffers... [0.02s] Loading trace points... [0.127s] Sorting trace points... [1.543s] Computing alignments... [41.812s] Deallocating buffers... [0.018s] Loading trace points... [0.099s] Sorting trace points... [1.65s] Computing alignments... [42.176s] Deallocating buffers... [0.022s] Loading trace points... [0s] Sorting trace points... [1.575s] Computing alignments... [41.847s] Deallocating buffers... [0.018s] Loading trace points... [0s] [340.946s] Deallocating reference... [0.057s] Loading reference sequences... [30.572s] Masking reference... [31.908s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.009s] Building reference histograms... [31.964s] Allocating buffers... [0s] Processing query block 1, reference block 7/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.432s] Building query seed array... [1.584s] Computing hash join... [5.644s] Masking low complexity seeds... [0.207s] Searching alignments... [55.341s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 1/2, index chunk 2/4. Building reference seed array... [13.417s] Building query seed array... [2.072s] Computing hash join... [5.802s] Masking low complexity seeds... [0.215s] Searching alignments... [36.454s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.612s] Building query seed array... [1.834s] Computing hash join... [5.868s] Masking low complexity seeds... [0.288s] Searching alignments... [30.613s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.545s] Building query seed array... [1.519s] Computing hash join... [5.435s] Masking low complexity seeds... [0.201s] Searching alignments... [27.672s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.742s] Building query seed array... [1.47s] Computing hash join... [5.074s] Masking low complexity seeds... [0.212s] Searching alignments... [30.412s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 2/2, index chunk 2/4. Building reference seed array... [13.533s] Building query seed array... [1.748s] Computing hash join... [5.397s] Masking low complexity seeds... [0.21s] Searching alignments... [21.1s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 2/2, index chunk 3/4. Building reference seed array... [14.017s] Building query seed array... [1.772s] Computing hash join... [5.802s] Masking low complexity seeds... [0.22s] Searching alignments... [26.473s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.583s] Building query seed array... [1.41s] Computing hash join... [5.645s] Masking low complexity seeds... [0.207s] Searching alignments... [21.991s] Deallocating memory... [0s] Deallocating buffers... [1.811s] Clearing query masking... [1.065s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [9.412s] Sorting trace points... [1.295s] Computing alignments... [39.092s] Deallocating buffers... [0.018s] Loading trace points... [0.148s] Sorting trace points... [1.16s] Computing alignments... [39.204s] Deallocating buffers... [0.019s] Loading trace points... [0.128s] Sorting trace points... [1.465s] Computing alignments... [38.534s] Deallocating buffers... [0.016s] Loading trace points... [0.163s] Sorting trace points... [1.384s] Computing alignments... [38.953s] Deallocating buffers... [0.017s] Loading trace points... [0.15s] Sorting trace points... [1.29s] Computing alignments... [41.294s] Deallocating buffers... [0.019s] Loading trace points... [0.118s] Sorting trace points... [1.423s] Computing alignments... [42.118s] Deallocating buffers... [0.022s] Loading trace points... [0.127s] Sorting trace points... [1.605s] Computing alignments... [42.418s] Deallocating buffers... [0.018s] Loading trace points... [0s] Sorting trace points... [1.298s] Computing alignments... [41.95s] Deallocating buffers... [0.021s] Loading trace points... [0s] [345.061s] Deallocating reference... [0.058s] Loading reference sequences... [34.016s] Masking reference... [31.182s] Initializing dictionary... [0.077s] Initializing temporary storage... [0.009s] Building reference histograms... [33.063s] Allocating buffers... [0s] Processing query block 1, reference block 8/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.142s] Building query seed array... [1.411s] Computing hash join... [6.39s] Masking low complexity seeds... [0.204s] Searching alignments... [53.481s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.607s] Building query seed array... [2s] Computing hash join... [6.435s] Masking low complexity seeds... [0.211s] Searching alignments... [36.205s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.808s] Building query seed array... [1.824s] Computing hash join... [6.149s] Masking low complexity seeds... [0.2s] Searching alignments... [29.767s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.095s] Building query seed array... [1.675s] Computing hash join... [6.48s] Masking low complexity seeds... [0.27s] Searching alignments... [27.299s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.144s] Building query seed array... [1.397s] Computing hash join... [6.254s] Masking low complexity seeds... [0.202s] Searching alignments... [29.346s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.436s] Building query seed array... [1.719s] Computing hash join... [6.022s] Masking low complexity seeds... [0.205s] Searching alignments... [21.06s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.556s] Building query seed array... [1.697s] Computing hash join... [6.494s] Masking low complexity seeds... [0.236s] Searching alignments... [25.714s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 2/2, index chunk 4/4. Building reference seed array... [9.95s] Building query seed array... [1.504s] Computing hash join... [6.144s] Masking low complexity seeds... [0.205s] Searching alignments... [20.931s] Deallocating memory... [0s] Deallocating buffers... [1.146s] Clearing query masking... [1.079s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [9.303s] Sorting trace points... [1.526s] Computing alignments... [38.937s] Deallocating buffers... [0.017s] Loading trace points... [0.15s] Sorting trace points... [1.174s] Computing alignments... [38.996s] Deallocating buffers... [0.018s] Loading trace points... [0.139s] Sorting trace points... [1.157s] Computing alignments... [38.332s] Deallocating buffers... [0.018s] Loading trace points... [0.115s] Sorting trace points... [1.196s] Computing alignments... [38.648s] Deallocating buffers... [0.019s] Loading trace points... [0.157s] Sorting trace points... [1.633s] Computing alignments... [41.132s] Deallocating buffers... [0.018s] Loading trace points... [0.146s] Sorting trace points... [1.647s] Computing alignments... [41.971s] Deallocating buffers... [0.018s] Loading trace points... [0.142s] Sorting trace points... [1.705s] Computing alignments... [42.287s] Deallocating buffers... [0.018s] Loading trace points... [0s] Sorting trace points... [1.395s] Computing alignments... [41.939s] Deallocating buffers... [0.022s] Loading trace points... [0s] [344.204s] Deallocating reference... [0.059s] Loading reference sequences... [32.327s] Masking reference... [32.148s] Initializing dictionary... [0.077s] Initializing temporary storage... [0.007s] Building reference histograms... [32.713s] Allocating buffers... [0.001s] Processing query block 1, reference block 9/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.459s] Building query seed array... [1.394s] Computing hash join... [6.445s] Masking low complexity seeds... [0.206s] Searching alignments... [52.195s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.626s] Building query seed array... [2.04s] Computing hash join... [6.518s] Masking low complexity seeds... [0.212s] Searching alignments... [36.312s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.627s] Building query seed array... [1.792s] Computing hash join... [6.091s] Masking low complexity seeds... [0.211s] Searching alignments... [29.551s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.068s] Building query seed array... [1.593s] Computing hash join... [6.459s] Masking low complexity seeds... [0.242s] Searching alignments... [25.658s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.522s] Building query seed array... [1.449s] Computing hash join... [6.275s] Masking low complexity seeds... [0.206s] Searching alignments... [30.659s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 2/2, index chunk 2/4. Building reference seed array... [13.056s] Building query seed array... [1.713s] Computing hash join... [5.931s] Masking low complexity seeds... [0.207s] Searching alignments... [21.232s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.133s] Building query seed array... [1.695s] Computing hash join... [6.499s] Masking low complexity seeds... [0.244s] Searching alignments... [26.515s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.229s] Building query seed array... [1.494s] Computing hash join... [6.261s] Masking low complexity seeds... [0.195s] Searching alignments... [20.813s] Deallocating memory... [0s] Deallocating buffers... [1.193s] Clearing query masking... [1.137s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [9.139s] Sorting trace points... [1.613s] Computing alignments... [38.941s] Deallocating buffers... [0.016s] Loading trace points... [0.137s] Sorting trace points... [1.554s] Computing alignments... [38.948s] Deallocating buffers... [0.017s] Loading trace points... [0.185s] Sorting trace points... [1.175s] Computing alignments... [38.259s] Deallocating buffers... [0.018s] Loading trace points... [0.13s] Sorting trace points... [1.488s] Computing alignments... [38.651s] Deallocating buffers... [0.02s] Loading trace points... [0.118s] Sorting trace points... [1.215s] Computing alignments... [41.113s] Deallocating buffers... [0.02s] Loading trace points... [0.86s] Sorting trace points... [1.702s] Computing alignments... [41.882s] Deallocating buffers... [0.018s] Loading trace points... [0.158s] Sorting trace points... [1.699s] Computing alignments... [42.315s] Deallocating buffers... [0.023s] Loading trace points... [0s] Sorting trace points... [1.467s] Computing alignments... [41.71s] Deallocating buffers... [0.021s] Loading trace points... [0s] [344.914s] Deallocating reference... [0.056s] Loading reference sequences... [29.824s] Masking reference... [32.129s] Initializing dictionary... [0.077s] Initializing temporary storage... [0.007s] Building reference histograms... [32.448s] Allocating buffers... [0s] Processing query block 1, reference block 10/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.399s] Building query seed array... [1.464s] Computing hash join... [6.459s] Masking low complexity seeds... [0.199s] Searching alignments... [52.642s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.678s] Building query seed array... [2.197s] Computing hash join... [6.456s] Masking low complexity seeds... [0.202s] Searching alignments... [36.207s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.505s] Building query seed array... [1.991s] Computing hash join... [6.208s] Masking low complexity seeds... [0.2s] Searching alignments... [30.2s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.333s] Building query seed array... [1.668s] Computing hash join... [6.43s] Masking low complexity seeds... [0.252s] Searching alignments... [26.104s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.826s] Building query seed array... [1.401s] Computing hash join... [6.178s] Masking low complexity seeds... [0.201s] Searching alignments... [30.147s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.652s] Building query seed array... [1.716s] Computing hash join... [6.122s] Masking low complexity seeds... [0.213s] Searching alignments... [21.778s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.65s] Building query seed array... [1.69s] Computing hash join... [6.463s] Masking low complexity seeds... [0.226s] Searching alignments... [25.709s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 2/2, index chunk 4/4. Building reference seed array... [9.977s] Building query seed array... [1.462s] Computing hash join... [6.232s] Masking low complexity seeds... [0.203s] Searching alignments... [20.857s] Deallocating memory... [0s] Deallocating buffers... [1.215s] Clearing query masking... [1.084s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [9.118s] Sorting trace points... [1.672s] Computing alignments... [38.946s] Deallocating buffers... [0.02s] Loading trace points... [0.131s] Sorting trace points... [1.682s] Computing alignments... [38.835s] Deallocating buffers... [0.192s] Loading trace points... [0.13s] Sorting trace points... [1.529s] Computing alignments... [38.287s] Deallocating buffers... [0.016s] Loading trace points... [0.096s] Sorting trace points... [1.274s] Computing alignments... [38.741s] Deallocating buffers... [0.019s] Loading trace points... [0.133s] Sorting trace points... [1.599s] Computing alignments... [41.197s] Deallocating buffers... [0.022s] Loading trace points... [0.125s] Sorting trace points... [1.632s] Computing alignments... [42.112s] Deallocating buffers... [0.018s] Loading trace points... [0.135s] Sorting trace points... [1.718s] Computing alignments... [42.636s] Deallocating buffers... [0.168s] Loading trace points... [0s] Sorting trace points... [1.654s] Computing alignments... [42.067s] Deallocating buffers... [0.018s] Loading trace points... [0s] [346.151s] Deallocating reference... [0.059s] Loading reference sequences... [31.746s] Masking reference... [32.077s] Initializing dictionary... [0.077s] Initializing temporary storage... [0.007s] Building reference histograms... [32.07s] Allocating buffers... [0s] Processing query block 1, reference block 11/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.277s] Building query seed array... [1.468s] Computing hash join... [6.371s] Masking low complexity seeds... [0.201s] Searching alignments... [51.601s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.905s] Building query seed array... [2.076s] Computing hash join... [6.743s] Masking low complexity seeds... [0.206s] Searching alignments... [36.864s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.57s] Building query seed array... [1.851s] Computing hash join... [6.373s] Masking low complexity seeds... [0.21s] Searching alignments... [29.576s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.681s] Building query seed array... [1.619s] Computing hash join... [6.749s] Masking low complexity seeds... [0.255s] Searching alignments... [25.664s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.669s] Building query seed array... [1.541s] Computing hash join... [6.42s] Masking low complexity seeds... [0.205s] Searching alignments... [28.013s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.412s] Building query seed array... [1.652s] Computing hash join... [6.062s] Masking low complexity seeds... [0.218s] Searching alignments... [21.175s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.585s] Building query seed array... [1.772s] Computing hash join... [6.411s] Masking low complexity seeds... [0.225s] Searching alignments... [25.646s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.384s] Building query seed array... [1.394s] Computing hash join... [6.197s] Masking low complexity seeds... [0.199s] Searching alignments... [20.427s] Deallocating memory... [0s] Deallocating buffers... [1.303s] Clearing query masking... [1.089s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [8.666s] Sorting trace points... [1.551s] Computing alignments... [38.826s] Deallocating buffers... [0.017s] Loading trace points... [0.12s] Sorting trace points... [1.607s] Computing alignments... [39.014s] Deallocating buffers... [0.221s] Loading trace points... [0.116s] Sorting trace points... [1.282s] Computing alignments... [38.246s] Deallocating buffers... [0.018s] Loading trace points... [0.121s] Sorting trace points... [1.479s] Computing alignments... [38.586s] Deallocating buffers... [0.017s] Loading trace points... [0.102s] Sorting trace points... [1.572s] Computing alignments... [40.956s] Deallocating buffers... [0.018s] Loading trace points... [0.211s] Sorting trace points... [1.6s] Computing alignments... [41.822s] Deallocating buffers... [0.022s] Loading trace points... [0.126s] Sorting trace points... [1.656s] Computing alignments... [42.267s] Deallocating buffers... [0.023s] Loading trace points... [0s] Sorting trace points... [1.491s] Computing alignments... [41.696s] Deallocating buffers... [0.022s] Loading trace points... [0s] [343.76s] Deallocating reference... [0.056s] Loading reference sequences... [29.834s] Masking reference... [32.114s] Initializing dictionary... [0.077s] Initializing temporary storage... [0.007s] Building reference histograms... [32.517s] Allocating buffers... [0s] Processing query block 1, reference block 12/14, shape 1/2, index chunk 1/4. Building reference seed array... [9.983s] Building query seed array... [1.458s] Computing hash join... [6.547s] Masking low complexity seeds... [0.21s] Searching alignments... [52.1s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 1/2, index chunk 2/4. Building reference seed array... [13.153s] Building query seed array... [2.031s] Computing hash join... [6.381s] Masking low complexity seeds... [0.207s] Searching alignments... [36.622s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.669s] Building query seed array... [1.916s] Computing hash join... [6.696s] Masking low complexity seeds... [0.202s] Searching alignments... [30.98s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.513s] Building query seed array... [1.576s] Computing hash join... [6.544s] Masking low complexity seeds... [0.216s] Searching alignments... [27.134s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.27s] Building query seed array... [1.376s] Computing hash join... [6.022s] Masking low complexity seeds... [0.21s] Searching alignments... [29.836s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.737s] Building query seed array... [1.698s] Computing hash join... [6.089s] Masking low complexity seeds... [0.194s] Searching alignments... [23.032s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.785s] Building query seed array... [1.739s] Computing hash join... [6.318s] Masking low complexity seeds... [0.202s] Searching alignments... [25.408s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.208s] Building query seed array... [1.431s] Computing hash join... [6.282s] Masking low complexity seeds... [0.21s] Searching alignments... [21.075s] Deallocating memory... [0s] Deallocating buffers... [1.411s] Clearing query masking... [1.13s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [8.995s] Sorting trace points... [1.634s] Computing alignments... [39.016s] Deallocating buffers... [0.017s] Loading trace points... [0.134s] Sorting trace points... [1.688s] Computing alignments... [39.058s] Deallocating buffers... [0.251s] Loading trace points... [0.144s] Sorting trace points... [1.502s] Computing alignments... [38.506s] Deallocating buffers... [0.02s] Loading trace points... [0.19s] Sorting trace points... [1.537s] Computing alignments... [38.912s] Deallocating buffers... [0.016s] Loading trace points... [0.143s] Sorting trace points... [1.612s] Computing alignments... [41.348s] Deallocating buffers... [0.018s] Loading trace points... [0.152s] Sorting trace points... [1.553s] Computing alignments... [42.28s] Deallocating buffers... [0.022s] Loading trace points... [0.134s] Sorting trace points... [1.449s] Computing alignments... [42.42s] Deallocating buffers... [0.021s] Loading trace points... [0s] Sorting trace points... [1.351s] Computing alignments... [42.011s] Deallocating buffers... [0.021s] Loading trace points... [0s] [347.61s] Deallocating reference... [0.056s] Loading reference sequences... [29.585s] Masking reference... [30.873s] Initializing dictionary... [0.077s] Initializing temporary storage... [0.007s] Building reference histograms... [32.606s] Allocating buffers... [0s] Processing query block 1, reference block 13/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.044s] Building query seed array... [1.507s] Computing hash join... [6.727s] Masking low complexity seeds... [0.201s] Searching alignments... [55.944s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.648s] Building query seed array... [2.023s] Computing hash join... [6.64s] Masking low complexity seeds... [0.203s] Searching alignments... [38.462s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.891s] Building query seed array... [1.901s] Computing hash join... [6.317s] Masking low complexity seeds... [0.222s] Searching alignments... [31.426s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.142s] Building query seed array... [1.554s] Computing hash join... [6.685s] Masking low complexity seeds... [0.244s] Searching alignments... [26.104s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.486s] Building query seed array... [1.387s] Computing hash join... [6.574s] Masking low complexity seeds... [0.212s] Searching alignments... [30.117s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.764s] Building query seed array... [1.641s] Computing hash join... [6.227s] Masking low complexity seeds... [0.215s] Searching alignments... [20.692s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.845s] Building query seed array... [1.72s] Computing hash join... [6.828s] Masking low complexity seeds... [0.245s] Searching alignments... [25.93s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.166s] Building query seed array... [1.456s] Computing hash join... [6.468s] Masking low complexity seeds... [0.199s] Searching alignments... [21.578s] Deallocating memory... [0s] Deallocating buffers... [1.474s] Clearing query masking... [1.1s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [8.647s] Sorting trace points... [1.581s] Computing alignments... [38.91s] Deallocating buffers... [0.02s] Loading trace points... [0.14s] Sorting trace points... [1.492s] Computing alignments... [39.107s] Deallocating buffers... [0.252s] Loading trace points... [0.111s] Sorting trace points... [1.51s] Computing alignments... [38.361s] Deallocating buffers... [0.02s] Loading trace points... [0.103s] Sorting trace points... [1.53s] Computing alignments... [38.693s] Deallocating buffers... [0.016s] Loading trace points... [0.113s] Sorting trace points... [1.498s] Computing alignments... [41.349s] Deallocating buffers... [0.018s] Loading trace points... [0.139s] Sorting trace points... [1.357s] Computing alignments... [42.22s] Deallocating buffers... [0.02s] Loading trace points... [0.118s] Sorting trace points... [1.615s] Computing alignments... [42.437s] Deallocating buffers... [0.204s] Loading trace points... [0s] Sorting trace points... [1.633s] Computing alignments... [42.003s] Deallocating buffers... [0.023s] Loading trace points... [0s] [345.424s] Deallocating reference... [0.058s] Loading reference sequences... [23.764s] Masking reference... [25.037s] Initializing dictionary... [0.062s] Initializing temporary storage... [0.007s] Building reference histograms... [26.164s] Allocating buffers... [0s] Processing query block 1, reference block 14/14, shape 1/2, index chunk 1/4. Building reference seed array... [8.235s] Building query seed array... [1.463s] Computing hash join... [4.54s] Masking low complexity seeds... [0.195s] Searching alignments... [41.784s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 1/2, index chunk 2/4. Building reference seed array... [10.536s] Building query seed array... [1.906s] Computing hash join... [4.579s] Masking low complexity seeds... [0.208s] Searching alignments... [29.148s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 1/2, index chunk 3/4. Building reference seed array... [11.006s] Building query seed array... [1.848s] Computing hash join... [4.531s] Masking low complexity seeds... [0.208s] Searching alignments... [25.125s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 1/2, index chunk 4/4. Building reference seed array... [8.079s] Building query seed array... [1.59s] Computing hash join... [4.574s] Masking low complexity seeds... [0.204s] Searching alignments... [20.863s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 2/2, index chunk 1/4. Building reference seed array... [8.552s] Building query seed array... [1.384s] Computing hash join... [4.335s] Masking low complexity seeds... [0.189s] Searching alignments... [24.404s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 2/2, index chunk 2/4. Building reference seed array... [10.344s] Building query seed array... [1.616s] Computing hash join... [4.497s] Masking low complexity seeds... [0.195s] Searching alignments... [18.008s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 2/2, index chunk 3/4. Building reference seed array... [10.79s] Building query seed array... [1.632s] Computing hash join... [4.42s] Masking low complexity seeds... [0.181s] Searching alignments... [20.371s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 2/2, index chunk 4/4. Building reference seed array... [8.175s] Building query seed array... [1.335s] Computing hash join... [4.421s] Masking low complexity seeds... [0.233s] Searching alignments... [16.662s] Deallocating memory... [0s] Deallocating buffers... [0.648s] Clearing query masking... [1.071s] Opening temporary output file... [0.021s] Computing alignments... Loading trace points... [11.284s] Sorting trace points... [2.007s] Computing alignments... [46.92s] Deallocating buffers... [0.021s] Loading trace points... [0.261s] Sorting trace points... [1.802s] Computing alignments... [45.797s] Deallocating buffers... [0.025s] Loading trace points... [0.139s] Sorting trace points... [1.669s] Computing alignments... [46.897s] Deallocating buffers... [0.021s] Loading trace points... [0.134s] Sorting trace points... [1.716s] Computing alignments... [50.047s] Deallocating buffers... [0.026s] Loading trace points... [0.054s] Sorting trace points... [1.533s] Computing alignments... [50.078s] Deallocating buffers... [0.024s] Loading trace points... [0s] Sorting trace points... [0.605s] Computing alignments... [16.617s] Deallocating buffers... [0.008s] Loading trace points... [0s] [277.863s] Deallocating reference... [0.046s] Loading reference sequences... [0.069s] Deallocating buffers... [0s] Joining output blocks... Joining output blocks... [1357.79s] [1357.79s] Deallocating queries... [0.052s] Loading query sequences... [0s] Closing the input file... [0s] Closing the output file... Loading dictionary... [3.135s] [4.132s] Closing the database... [0s] Cleaning up... [0s] Total time = 13113.6s Reported 1506427849 pairwise alignments, 1506427849 HSPs. 8798541 queries aligned. DIAMOND BLASTx on /gscratch/srlab/sam/data/P_verrucosa/RNAseq/E5_R2.fastp-trim.20230215.fq.gz complete: E5_R2.blastx.meganized.daa Now MEGANizing E5_R2.blastx.meganized.daa Version MEGAN Community Edition (version 6.22.0, built 19 Feb 2022) Author(s) Daniel H. Huson Copyright (C) 2022 Daniel H. Huson. This program comes with ABSOLUTELY NO WARRANTY. Java version: 17.0.2 Functional classifications to use: EC, EGGNOG, GTDB, INTERPRO2GO, SEED Loading ncbi.map: 2,396,736 Loading ncbi.tre: 2,396,740 Loading ec.map: 8,200 Loading ec.tre: 8,204 Loading eggnog.map: 30,875 Loading eggnog.tre: 30,986 Loading gtdb.map: 240,103 Loading gtdb.tre: 240,107 Loading interpro2go.map: 14,242 Loading interpro2go.tre: 28,907 Loading seed.map: 961 Loading seed.tre: 962 Meganizing: E5_R2.blastx.meganized.daa Meganizing init Annotating DAA file using FAST mode (accession database and first accession per line) Annotating references 10% 20% 30% 40% 50% 60% 100% (402.9s) Writing 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (1.2s) Binning reads Initializing... Initializing binning... Using 'Naive LCA' algorithm for binning: Taxonomy Using Best-Hit algorithm for binning: SEED Using Best-Hit algorithm for binning: EGGNOG Using 'Naive LCA' algorithm for binning: GTDB Using Best-Hit algorithm for binning: EC Using Best-Hit algorithm for binning: INTERPRO2GO Binning reads... Binning reads Analyzing alignments 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (2,917.8s) Total reads: 8,798,541 With hits: 8,798,541 Alignments: 1,504,846,576 Assig. Taxonomy: 8,120,728 Assig. SEED: 64,165 Assig. EGGNOG: 26,870 Assig. GTDB: 219,562 Assig. EC: 1,292,766 Assig. INTERPRO2GO: 709,696 MinSupport set to: 4399 Binning reads Applying min-support & disabled filter to Taxonomy... 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (0.3s) Min-supp. changes: 3,105 Binning reads Applying min-support & disabled filter to GTDB... 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (5.1s) Min-supp. changes: 2,219 Binning reads Writing classification tables 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (11.3s) Binning reads Syncing 100% (0.3s) Class. Taxonomy: 63 Class. SEED: 452 Class. EGGNOG: 1,574 Class. GTDB: 17 Class. EC: 2,150 Class. INTERPRO2GO: 7,353 Total time: 3,347s Peak memory: 31.9 of 195.3G MEGANization of E5_R2.blastx.meganized.daa completed. Generating MD5 checksum for /gscratch/srlab/sam/data/P_verrucosa/RNAseq/E6_R1.fastp-trim.20230215.fq.gz... 19a03d1fc51169d2231d0f331a8e66b0 /gscratch/srlab/sam/data/P_verrucosa/RNAseq/E6_R1.fastp-trim.20230215.fq.gz Running DIAMOND BLASTx on /gscratch/srlab/sam/data/P_verrucosa/RNAseq/E6_R1.fastp-trim.20230215.fq.gz. diamond v2.1.1.155 (C) Max Planck Society for the Advancement of Science Documentation, support and updates available at http://www.diamondsearch.org Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021) #CPU threads: 40 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: Percentage range of top alignment score to report hits: 5 Opening the database... [0.301s] Database: /gscratch/srlab/blastdbs/20230215-ncbi-nr/20230215-ncbi-nr.dmnd (type: Diamond database, sequences: 526308523, letters: 207134680681) Block size = 15000000000 Opening the input file... [0.828s] Opening the output file... [0s] Loading query sequences... [76.965s] Masking queries... [19.287s] Algorithm: Double-indexed Building query histograms... [18.219s] Loading reference sequences... [29.656s] Masking reference... [30.885s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.008s] Building reference histograms... [32.722s] Allocating buffers... [0s] Processing query block 1, reference block 1/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.44s] Building query seed array... [2.236s] Computing hash join... [6.87s] Masking low complexity seeds... [0.331s] Searching alignments... [99.389s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.463s] Building query seed array... [2.743s] Computing hash join... [6.741s] Masking low complexity seeds... [0.282s] Searching alignments... [67.364s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.565s] Building query seed array... [2.949s] Computing hash join... [6.483s] Masking low complexity seeds... [0.206s] Searching alignments... [54.86s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.133s] Building query seed array... [2.264s] Computing hash join... [6.385s] Masking low complexity seeds... [0.209s] Searching alignments... [44.566s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 2/2, index chunk 1/4. Building reference seed array... [9.914s] Building query seed array... [2.036s] Computing hash join... [6.366s] Masking low complexity seeds... [0.196s] Searching alignments... [49.067s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 2/2, index chunk 2/4. Building reference seed array... [13.015s] Building query seed array... [2.472s] Computing hash join... [6.193s] Masking low complexity seeds... [0.203s] Searching alignments... [36.47s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.333s] Building query seed array... [2.523s] Computing hash join... [6.189s] Masking low complexity seeds... [0.21s] Searching alignments... [43s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.171s] Building query seed array... [2.15s] Computing hash join... [6.377s] Masking low complexity seeds... [0.211s] Searching alignments... [35.819s] Deallocating memory... [0s] Deallocating buffers... [1.247s] Clearing query masking... [1.768s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [7.117s] Sorting trace points... [1.311s] Computing alignments... [34.123s] Deallocating buffers... [0.017s] Loading trace points... [0.038s] Sorting trace points... [1.288s] Computing alignments... [34.164s] Deallocating buffers... [0.015s] Loading trace points... [0.089s] Sorting trace points... [1.301s] Computing alignments... [34.23s] Deallocating buffers... [0.018s] Loading trace points... [0.056s] Sorting trace points... [1.278s] Computing alignments... [33.879s] Deallocating buffers... [0.015s] Loading trace points... [0.08s] Sorting trace points... [1.151s] Computing alignments... [33.688s] Deallocating buffers... [0.017s] Loading trace points... [0.077s] Sorting trace points... [1.139s] Computing alignments... [33.927s] Deallocating buffers... [0.015s] Loading trace points... [0.057s] Sorting trace points... [1.273s] Computing alignments... [33.685s] Deallocating buffers... [0.014s] Loading trace points... [0.061s] Sorting trace points... [0.914s] Computing alignments... [33.579s] Deallocating buffers... [0.016s] Loading trace points... [0.074s] Sorting trace points... [1.11s] Computing alignments... [34.464s] Deallocating buffers... [0.016s] Loading trace points... [0.126s] Sorting trace points... [1.108s] Computing alignments... [35.062s] Deallocating buffers... [0.017s] Loading trace points... [0.074s] Sorting trace points... [1.405s] Computing alignments... [35.582s] Deallocating buffers... [0.015s] Loading trace points... [0.082s] Sorting trace points... [1.35s] Computing alignments... [35.364s] Deallocating buffers... [0.015s] Loading trace points... [0.002s] Sorting trace points... [1.284s] Computing alignments... [35.316s] Deallocating buffers... [0.018s] Loading trace points... [0.746s] Sorting trace points... [1.074s] Computing alignments... [35.618s] Deallocating buffers... [0.016s] Loading trace points... [0.073s] Sorting trace points... [1.321s] Computing alignments... [35.685s] Deallocating buffers... [0.019s] Loading trace points... [0s] Sorting trace points... [1.306s] Computing alignments... [34.982s] Deallocating buffers... [0.015s] Loading trace points... [0s] [582.2s] Deallocating reference... [0.056s] Loading reference sequences... [30.955s] Masking reference... [31.958s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.007s] Building reference histograms... [32.014s] Allocating buffers... [0.001s] Processing query block 1, reference block 2/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.159s] Building query seed array... [2.045s] Computing hash join... [6.659s] Masking low complexity seeds... [0.482s] Searching alignments... [94.651s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 1/2, index chunk 2/4. Building reference seed array... [13.09s] Building query seed array... [2.91s] Computing hash join... [6.985s] Masking low complexity seeds... [0.285s] Searching alignments... [63.661s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.163s] Building query seed array... [2.797s] Computing hash join... [6.339s] Masking low complexity seeds... [0.223s] Searching alignments... [49.891s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.468s] Building query seed array... [2.405s] Computing hash join... [7.178s] Masking low complexity seeds... [0.218s] Searching alignments... [42.699s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.089s] Building query seed array... [2.129s] Computing hash join... [6.277s] Masking low complexity seeds... [0.194s] Searching alignments... [47.494s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.756s] Building query seed array... [2.387s] Computing hash join... [6.526s] Masking low complexity seeds... [0.195s] Searching alignments... [36.258s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.521s] Building query seed array... [2.497s] Computing hash join... [6.744s] Masking low complexity seeds... [0.309s] Searching alignments... [41.553s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.435s] Building query seed array... [2.083s] Computing hash join... [6.286s] Masking low complexity seeds... [0.196s] Searching alignments... [35.131s] Deallocating memory... [0s] Deallocating buffers... [1.488s] Clearing query masking... [1.705s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [7.058s] Sorting trace points... [1.249s] Computing alignments... [33.662s] Deallocating buffers... [0.017s] Loading trace points... [0s] Sorting trace points... [1.267s] Computing alignments... [34.003s] Deallocating buffers... [0.018s] Loading trace points... [0.054s] Sorting trace points... [1.183s] Computing alignments... [33.962s] Deallocating buffers... [0.015s] Loading trace points... [0.051s] Sorting trace points... [0.945s] Computing alignments... [33.747s] Deallocating buffers... [0.016s] Loading trace points... [0.056s] Sorting trace points... [1.283s] Computing alignments... [33.541s] Deallocating buffers... [0.017s] Loading trace points... [0.056s] Sorting trace points... [1.303s] Computing alignments... [33.699s] Deallocating buffers... [0.017s] Loading trace points... [0.04s] Sorting trace points... [1.276s] Computing alignments... [33.411s] Deallocating buffers... [0.014s] Loading trace points... [0.047s] Sorting trace points... [1.248s] Computing alignments... [33.44s] Deallocating buffers... [0.014s] Loading trace points... [0.068s] Sorting trace points... [1.306s] Computing alignments... [34.46s] Deallocating buffers... [0.015s] Loading trace points... [0.081s] Sorting trace points... [1.016s] Computing alignments... [35.07s] Deallocating buffers... [0.016s] Loading trace points... [0.053s] Sorting trace points... [1.35s] Computing alignments... [35.245s] Deallocating buffers... [0.015s] Loading trace points... [0.068s] Sorting trace points... [1.176s] Computing alignments... [35.174s] Deallocating buffers... [0.018s] Loading trace points... [0.057s] Sorting trace points... [1.368s] Computing alignments... [35.199s] Deallocating buffers... [0.015s] Loading trace points... [0.08s] Sorting trace points... [1.352s] Computing alignments... [35.296s] Deallocating buffers... [0.019s] Loading trace points... [0.074s] Sorting trace points... [1.344s] Computing alignments... [35.399s] Deallocating buffers... [0.018s] Loading trace points... [0s] Sorting trace points... [1.053s] Computing alignments... [34.91s] Deallocating buffers... [0.016s] Loading trace points... [0s] [578.186s] Deallocating reference... [0.056s] Loading reference sequences... [29.568s] Masking reference... [31.052s] Initializing dictionary... [0.077s] Initializing temporary storage... [0.007s] Building reference histograms... [32.664s] Allocating buffers... [0s] Processing query block 1, reference block 3/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.573s] Building query seed array... [2.136s] Computing hash join... [6.009s] Masking low complexity seeds... [0.404s] Searching alignments... [99.66s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 1/2, index chunk 2/4. Building reference seed array... [13.077s] Building query seed array... [2.696s] Computing hash join... [5.617s] Masking low complexity seeds... [0.235s] Searching alignments... [63.542s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.358s] Building query seed array... [2.782s] Computing hash join... [6.558s] Masking low complexity seeds... [0.249s] Searching alignments... [51.378s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.533s] Building query seed array... [2.389s] Computing hash join... [5.829s] Masking low complexity seeds... [0.22s] Searching alignments... [43.915s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.889s] Building query seed array... [2.124s] Computing hash join... [5.931s] Masking low complexity seeds... [0.205s] Searching alignments... [48.968s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.647s] Building query seed array... [2.525s] Computing hash join... [5.694s] Masking low complexity seeds... [0.211s] Searching alignments... [35.702s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.668s] Building query seed array... [2.555s] Computing hash join... [5.541s] Masking low complexity seeds... [0.215s] Searching alignments... [42.288s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.536s] Building query seed array... [2.097s] Computing hash join... [5.733s] Masking low complexity seeds... [0.251s] Searching alignments... [35.253s] Deallocating memory... [0s] Deallocating buffers... [2.004s] Clearing query masking... [1.79s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [7.701s] Sorting trace points... [1.386s] Computing alignments... [33.945s] Deallocating buffers... [0.017s] Loading trace points... [0.045s] Sorting trace points... [1.006s] Computing alignments... [33.996s] Deallocating buffers... [0.016s] Loading trace points... [0.064s] Sorting trace points... [1.279s] Computing alignments... [34.04s] Deallocating buffers... [0.018s] Loading trace points... [0.945s] Sorting trace points... [1.259s] Computing alignments... [33.649s] Deallocating buffers... [0.017s] Loading trace points... [0.069s] Sorting trace points... [1.277s] Computing alignments... [33.432s] Deallocating buffers... [0.015s] Loading trace points... [0.068s] Sorting trace points... [1.255s] Computing alignments... [33.805s] Deallocating buffers... [0.015s] Loading trace points... [0.075s] Sorting trace points... [0.977s] Computing alignments... [33.798s] Deallocating buffers... [0.016s] Loading trace points... [0.071s] Sorting trace points... [1.179s] Computing alignments... [33.407s] Deallocating buffers... [0.017s] Loading trace points... [0.062s] Sorting trace points... [1.287s] Computing alignments... [34.309s] Deallocating buffers... [0.015s] Loading trace points... [0.064s] Sorting trace points... [1.331s] Computing alignments... [34.907s] Deallocating buffers... [0.015s] Loading trace points... [0.074s] Sorting trace points... [1.283s] Computing alignments... [35.202s] Deallocating buffers... [0.018s] Loading trace points... [0.057s] Sorting trace points... [1.262s] Computing alignments... [35.154s] Deallocating buffers... [0.018s] Loading trace points... [0s] Sorting trace points... [1.3s] Computing alignments... [35.17s] Deallocating buffers... [0.018s] Loading trace points... [0.067s] Sorting trace points... [1.489s] Computing alignments... [35.296s] Deallocating buffers... [0.113s] Loading trace points... [0.069s] Sorting trace points... [1.391s] Computing alignments... [35.413s] Deallocating buffers... [0.058s] Loading trace points... [0s] Sorting trace points... [1.291s] Computing alignments... [34.859s] Deallocating buffers... [0.018s] Loading trace points... [0s] [580.66s] Deallocating reference... [0.064s] Loading reference sequences... [29.172s] Masking reference... [31.786s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.008s] Building reference histograms... [32.32s] Allocating buffers... [0s] Processing query block 1, reference block 4/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.663s] Building query seed array... [2.289s] Computing hash join... [6.956s] Masking low complexity seeds... [0.469s] Searching alignments... [94.981s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.873s] Building query seed array... [2.949s] Computing hash join... [6.587s] Masking low complexity seeds... [0.238s] Searching alignments... [62.599s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.579s] Building query seed array... [2.809s] Computing hash join... [7.263s] Masking low complexity seeds... [0.269s] Searching alignments... [50.522s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.608s] Building query seed array... [2.486s] Computing hash join... [6.581s] Masking low complexity seeds... [0.229s] Searching alignments... [44.22s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.608s] Building query seed array... [1.987s] Computing hash join... [6.597s] Masking low complexity seeds... [0.194s] Searching alignments... [47.302s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.235s] Building query seed array... [2.473s] Computing hash join... [6.411s] Masking low complexity seeds... [0.197s] Searching alignments... [35.609s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.782s] Building query seed array... [2.463s] Computing hash join... [6.339s] Masking low complexity seeds... [0.202s] Searching alignments... [41.293s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.596s] Building query seed array... [2.13s] Computing hash join... [6.288s] Masking low complexity seeds... [0.218s] Searching alignments... [34.819s] Deallocating memory... [0s] Deallocating buffers... [1.653s] Clearing query masking... [1.74s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [6.648s] Sorting trace points... [1.403s] Computing alignments... [33.939s] Deallocating buffers... [0.015s] Loading trace points... [0.043s] Sorting trace points... [1.324s] Computing alignments... [33.885s] Deallocating buffers... [0.018s] Loading trace points... [0.052s] Sorting trace points... [1.34s] Computing alignments... [34.042s] Deallocating buffers... [0.015s] Loading trace points... [0.075s] Sorting trace points... [1.277s] Computing alignments... [33.596s] Deallocating buffers... [0.014s] Loading trace points... [0.062s] Sorting trace points... [1.291s] Computing alignments... [33.431s] Deallocating buffers... [0.018s] Loading trace points... [0.077s] Sorting trace points... [1.271s] Computing alignments... [33.796s] Deallocating buffers... [0.014s] Loading trace points... [0.048s] Sorting trace points... [0.93s] Computing alignments... [33.635s] Deallocating buffers... [0.016s] Loading trace points... [0.059s] Sorting trace points... [1.179s] Computing alignments... [33.415s] Deallocating buffers... [0.015s] Loading trace points... [0.065s] Sorting trace points... [0.938s] Computing alignments... [34.454s] Deallocating buffers... [0.016s] Loading trace points... [0.102s] Sorting trace points... [0.996s] Computing alignments... [35.073s] Deallocating buffers... [0.016s] Loading trace points... [0.078s] Sorting trace points... [1.357s] Computing alignments... [35.362s] Deallocating buffers... [0.015s] Loading trace points... [0.046s] Sorting trace points... [1.031s] Computing alignments... [35.169s] Deallocating buffers... [0.017s] Loading trace points... [0.07s] Sorting trace points... [1.358s] Computing alignments... [35.25s] Deallocating buffers... [0.015s] Loading trace points... [0.001s] Sorting trace points... [1.375s] Computing alignments... [35.492s] Deallocating buffers... [0.016s] Loading trace points... [0.082s] Sorting trace points... [1.508s] Computing alignments... [35.62s] Deallocating buffers... [0.267s] Loading trace points... [0s] Sorting trace points... [1.08s] Computing alignments... [34.991s] Deallocating buffers... [0.017s] Loading trace points... [0s] [578.996s] Deallocating reference... [0.064s] Loading reference sequences... [254.979s] Masking reference... [31.139s] Initializing dictionary... [0.077s] Initializing temporary storage... [0.008s] Building reference histograms... [32.363s] Allocating buffers... [0s] Processing query block 1, reference block 5/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.465s] Building query seed array... [2.137s] Computing hash join... [6.721s] Masking low complexity seeds... [0.203s] Searching alignments... [97.464s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.458s] Building query seed array... [2.876s] Computing hash join... [6.204s] Masking low complexity seeds... [0.234s] Searching alignments... [62.163s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 1/2, index chunk 3/4. Building reference seed array... [14.36s] Building query seed array... [2.942s] Computing hash join... [5.775s] Masking low complexity seeds... [0.234s] Searching alignments... [52.797s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 1/2, index chunk 4/4. Building reference seed array... [11.178s] Building query seed array... [2.374s] Computing hash join... [5.745s] Masking low complexity seeds... [0.229s] Searching alignments... [44.291s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 2/2, index chunk 1/4. Building reference seed array... [11.056s] Building query seed array... [2.083s] Computing hash join... [5.698s] Masking low complexity seeds... [0.213s] Searching alignments... [46.675s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.7s] Building query seed array... [2.593s] Computing hash join... [5.648s] Masking low complexity seeds... [0.21s] Searching alignments... [35.053s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 2/2, index chunk 3/4. Building reference seed array... [14.316s] Building query seed array... [2.567s] Computing hash join... [5.743s] Masking low complexity seeds... [0.192s] Searching alignments... [41.426s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 2/2, index chunk 4/4. Building reference seed array... [11.017s] Building query seed array... [2.118s] Computing hash join... [5.655s] Masking low complexity seeds... [0.226s] Searching alignments... [35.264s] Deallocating memory... [0s] Deallocating buffers... [2.464s] Clearing query masking... [1.625s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [7.288s] Sorting trace points... [1.245s] Computing alignments... [33.726s] Deallocating buffers... [0.017s] Loading trace points... [0.193s] Sorting trace points... [1.303s] Computing alignments... [33.877s] Deallocating buffers... [0.018s] Loading trace points... [0.058s] Sorting trace points... [1.155s] Computing alignments... [34.115s] Deallocating buffers... [0.016s] Loading trace points... [0.042s] Sorting trace points... [1.087s] Computing alignments... [33.655s] Deallocating buffers... [0.015s] Loading trace points... [0.082s] Sorting trace points... [1.122s] Computing alignments... [33.524s] Deallocating buffers... [0.015s] Loading trace points... [0.057s] Sorting trace points... [1.271s] Computing alignments... [33.572s] Deallocating buffers... [0.014s] Loading trace points... [0.614s] Sorting trace points... [1.322s] Computing alignments... [33.287s] Deallocating buffers... [0.018s] Loading trace points... [0.103s] Sorting trace points... [1.244s] Computing alignments... [33.279s] Deallocating buffers... [0.018s] Loading trace points... [0.059s] Sorting trace points... [1.259s] Computing alignments... [34.252s] Deallocating buffers... [0.015s] Loading trace points... [0.06s] Sorting trace points... [1.263s] Computing alignments... [34.909s] Deallocating buffers... [0.018s] Loading trace points... [0.058s] Sorting trace points... [1.359s] Computing alignments... [35.258s] Deallocating buffers... [0.015s] Loading trace points... [0.059s] Sorting trace points... [1.361s] Computing alignments... [35.129s] Deallocating buffers... [0.019s] Loading trace points... [0.39s] Sorting trace points... [1.423s] Computing alignments... [35.154s] Deallocating buffers... [0.018s] Loading trace points... [0.067s] Sorting trace points... [1.399s] Computing alignments... [35.393s] Deallocating buffers... [0.015s] Loading trace points... [0.061s] Sorting trace points... [1.251s] Computing alignments... [35.382s] Deallocating buffers... [0.018s] Loading trace points... [0s] Sorting trace points... [1.416s] Computing alignments... [34.981s] Deallocating buffers... [0.146s] Loading trace points... [0s] [579.712s] Deallocating reference... [0.072s] Loading reference sequences... [34.789s] Masking reference... [31.449s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.008s] Building reference histograms... [32.178s] Allocating buffers... [0.001s] Processing query block 1, reference block 6/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.69s] Building query seed array... [2.203s] Computing hash join... [6.909s] Masking low complexity seeds... [0.483s] Searching alignments... [92.211s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.911s] Building query seed array... [2.783s] Computing hash join... [6.406s] Masking low complexity seeds... [0.205s] Searching alignments... [60.23s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.437s] Building query seed array... [2.894s] Computing hash join... [7.156s] Masking low complexity seeds... [0.33s] Searching alignments... [49.306s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.619s] Building query seed array... [2.287s] Computing hash join... [6.37s] Masking low complexity seeds... [0.227s] Searching alignments... [45.202s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.51s] Building query seed array... [2.184s] Computing hash join... [6.772s] Masking low complexity seeds... [0.202s] Searching alignments... [45.589s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.289s] Building query seed array... [2.354s] Computing hash join... [6.258s] Masking low complexity seeds... [0.189s] Searching alignments... [34.415s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.899s] Building query seed array... [2.626s] Computing hash join... [6.248s] Masking low complexity seeds... [0.197s] Searching alignments... [40.333s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.252s] Building query seed array... [2.151s] Computing hash join... [6.295s] Masking low complexity seeds... [0.208s] Searching alignments... [34.418s] Deallocating memory... [0s] Deallocating buffers... [1.849s] Clearing query masking... [1.699s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [6.697s] Sorting trace points... [1.403s] Computing alignments... [33.501s] Deallocating buffers... [0.017s] Loading trace points... [0.097s] Sorting trace points... [1.34s] Computing alignments... [33.548s] Deallocating buffers... [0.018s] Loading trace points... [0.063s] Sorting trace points... [1.253s] Computing alignments... [33.678s] Deallocating buffers... [0.015s] Loading trace points... [0.103s] Sorting trace points... [1.268s] Computing alignments... [33.294s] Deallocating buffers... [0.014s] Loading trace points... [0.088s] Sorting trace points... [1.17s] Computing alignments... [33.085s] Deallocating buffers... [0.015s] Loading trace points... [0.047s] Sorting trace points... [1.305s] Computing alignments... [33.544s] Deallocating buffers... [0.015s] Loading trace points... [0.076s] Sorting trace points... [1.113s] Computing alignments... [33.276s] Deallocating buffers... [0.017s] Loading trace points... [0.062s] Sorting trace points... [1.215s] Computing alignments... [33.146s] Deallocating buffers... [0.014s] Loading trace points... [0.077s] Sorting trace points... [1.325s] Computing alignments... [34.149s] Deallocating buffers... [0.015s] Loading trace points... [0.882s] Sorting trace points... [1.472s] Computing alignments... [34.65s] Deallocating buffers... [0.123s] Loading trace points... [0.053s] Sorting trace points... [1.4s] Computing alignments... [34.951s] Deallocating buffers... [0.015s] Loading trace points... [0.063s] Sorting trace points... [1.526s] Computing alignments... [34.863s] Deallocating buffers... [0.168s] Loading trace points... [0.071s] Sorting trace points... [1.083s] Computing alignments... [34.818s] Deallocating buffers... [0.016s] Loading trace points... [0.128s] Sorting trace points... [1.357s] Computing alignments... [34.957s] Deallocating buffers... [0.015s] Loading trace points... [0.061s] Sorting trace points... [1.39s] Computing alignments... [35.111s] Deallocating buffers... [0.018s] Loading trace points... [0s] Sorting trace points... [1.273s] Computing alignments... [34.667s] Deallocating buffers... [0.015s] Loading trace points... [0s] [575.385s] Deallocating reference... [0.075s] Loading reference sequences... [29.844s] Masking reference... [32.242s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.008s] Building reference histograms... [32.409s] Allocating buffers... [0s] Processing query block 1, reference block 7/14, shape 1/2, index chunk 1/4. Building reference seed array... [9.986s] Building query seed array... [2.121s] Computing hash join... [6.752s] Masking low complexity seeds... [0.222s] Searching alignments... [99.97s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.676s] Building query seed array... [2.868s] Computing hash join... [6.992s] Masking low complexity seeds... [0.236s] Searching alignments... [64.706s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.369s] Building query seed array... [2.834s] Computing hash join... [7.471s] Masking low complexity seeds... [0.213s] Searching alignments... [53.678s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.661s] Building query seed array... [2.373s] Computing hash join... [6.802s] Masking low complexity seeds... [0.21s] Searching alignments... [46.017s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.511s] Building query seed array... [2.027s] Computing hash join... [6.243s] Masking low complexity seeds... [0.189s] Searching alignments... [48.347s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.167s] Building query seed array... [2.477s] Computing hash join... [6.599s] Masking low complexity seeds... [0.211s] Searching alignments... [36.931s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.752s] Building query seed array... [2.525s] Computing hash join... [6.837s] Masking low complexity seeds... [0.238s] Searching alignments... [41.57s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.448s] Building query seed array... [2.036s] Computing hash join... [6.923s] Masking low complexity seeds... [0.314s] Searching alignments... [35.023s] Deallocating memory... [0s] Deallocating buffers... [1.802s] Clearing query masking... [1.705s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [6.707s] Sorting trace points... [1.351s] Computing alignments... [33.966s] Deallocating buffers... [0.016s] Loading trace points... [0.045s] Sorting trace points... [1.28s] Computing alignments... [33.991s] Deallocating buffers... [0.018s] Loading trace points... [0.116s] Sorting trace points... [1.304s] Computing alignments... [34.201s] Deallocating buffers... [0.018s] Loading trace points... [0.053s] Sorting trace points... [1.311s] Computing alignments... [33.699s] Deallocating buffers... [0.015s] Loading trace points... [0.09s] Sorting trace points... [1.413s] Computing alignments... [33.414s] Deallocating buffers... [0.095s] Loading trace points... [0.104s] Sorting trace points... [1.187s] Computing alignments... [33.85s] Deallocating buffers... [0.015s] Loading trace points... [0.05s] Sorting trace points... [1.248s] Computing alignments... [33.666s] Deallocating buffers... [0.014s] Loading trace points... [0.06s] Sorting trace points... [1.269s] Computing alignments... [33.529s] Deallocating buffers... [0.017s] Loading trace points... [0.066s] Sorting trace points... [0.967s] Computing alignments... [34.564s] Deallocating buffers... [0.016s] Loading trace points... [0.087s] Sorting trace points... [1.351s] Computing alignments... [35.088s] Deallocating buffers... [0.015s] Loading trace points... [0.156s] Sorting trace points... [1.373s] Computing alignments... [35.458s] Deallocating buffers... [0.018s] Loading trace points... [0.08s] Sorting trace points... [1.357s] Computing alignments... [35.431s] Deallocating buffers... [0.015s] Loading trace points... [0.05s] Sorting trace points... [1.327s] Computing alignments... [35.341s] Deallocating buffers... [0.015s] Loading trace points... [0.047s] Sorting trace points... [1.389s] Computing alignments... [35.589s] Deallocating buffers... [0.015s] Loading trace points... [0.082s] Sorting trace points... [1.431s] Computing alignments... [35.596s] Deallocating buffers... [0.072s] Loading trace points... [0s] Sorting trace points... [1.372s] Computing alignments... [35.065s] Deallocating buffers... [0.015s] Loading trace points... [0s] [581.813s] Deallocating reference... [0.071s] Loading reference sequences... [30.532s] Masking reference... [30.966s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.008s] Building reference histograms... [32.474s] Allocating buffers... [0.001s] Processing query block 1, reference block 8/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.298s] Building query seed array... [2.092s] Computing hash join... [6.68s] Masking low complexity seeds... [0.404s] Searching alignments... [97.08s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 1/2, index chunk 2/4. Building reference seed array... [13.697s] Building query seed array... [2.739s] Computing hash join... [6.771s] Masking low complexity seeds... [0.308s] Searching alignments... [63.568s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 1/2, index chunk 3/4. Building reference seed array... [14.016s] Building query seed array... [2.788s] Computing hash join... [6.354s] Masking low complexity seeds... [0.217s] Searching alignments... [53.513s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.851s] Building query seed array... [2.315s] Computing hash join... [6.723s] Masking low complexity seeds... [0.339s] Searching alignments... [44.601s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.224s] Building query seed array... [2.095s] Computing hash join... [6.005s] Masking low complexity seeds... [0.193s] Searching alignments... [45.345s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.896s] Building query seed array... [2.388s] Computing hash join... [6.595s] Masking low complexity seeds... [0.214s] Searching alignments... [34.82s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 2/2, index chunk 3/4. Building reference seed array... [14.164s] Building query seed array... [2.615s] Computing hash join... [6.602s] Masking low complexity seeds... [0.215s] Searching alignments... [40.983s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.61s] Building query seed array... [2.052s] Computing hash join... [6.658s] Masking low complexity seeds... [0.21s] Searching alignments... [35.288s] Deallocating memory... [0s] Deallocating buffers... [2.197s] Clearing query masking... [1.77s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [7.171s] Sorting trace points... [1.388s] Computing alignments... [33.871s] Deallocating buffers... [0.016s] Loading trace points... [0.048s] Sorting trace points... [1.12s] Computing alignments... [33.932s] Deallocating buffers... [0.015s] Loading trace points... [0.058s] Sorting trace points... [1.264s] Computing alignments... [33.993s] Deallocating buffers... [0.015s] Loading trace points... [0.044s] Sorting trace points... [1.314s] Computing alignments... [33.588s] Deallocating buffers... [0.018s] Loading trace points... [0.077s] Sorting trace points... [1.282s] Computing alignments... [33.295s] Deallocating buffers... [0.017s] Loading trace points... [0.07s] Sorting trace points... [1.295s] Computing alignments... [33.592s] Deallocating buffers... [0.014s] Loading trace points... [0.079s] Sorting trace points... [1.265s] Computing alignments... [33.382s] Deallocating buffers... [0.018s] Loading trace points... [0.074s] Sorting trace points... [1.272s] Computing alignments... [33.323s] Deallocating buffers... [0.014s] Loading trace points... [0.086s] Sorting trace points... [1.319s] Computing alignments... [34.27s] Deallocating buffers... [0.018s] Loading trace points... [0.072s] Sorting trace points... [1.334s] Computing alignments... [34.856s] Deallocating buffers... [0.015s] Loading trace points... [0.056s] Sorting trace points... [1.337s] Computing alignments... [35.153s] Deallocating buffers... [0.019s] Loading trace points... [0.053s] Sorting trace points... [1.344s] Computing alignments... [35.107s] Deallocating buffers... [0.015s] Loading trace points... [0.039s] Sorting trace points... [1.377s] Computing alignments... [35.041s] Deallocating buffers... [0.019s] Loading trace points... [0.044s] Sorting trace points... [1.565s] Computing alignments... [35.499s] Deallocating buffers... [0.223s] Loading trace points... [0.09s] Sorting trace points... [1.412s] Computing alignments... [35.319s] Deallocating buffers... [0.015s] Loading trace points... [0s] Sorting trace points... [1.344s] Computing alignments... [34.839s] Deallocating buffers... [0.018s] Loading trace points... [0s] [578.991s] Deallocating reference... [0.056s] Loading reference sequences... [34.2s] Masking reference... [31.354s] Initializing dictionary... [0.077s] Initializing temporary storage... [0.008s] Building reference histograms... [31.695s] Allocating buffers... [0.001s] Processing query block 1, reference block 9/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.6s] Building query seed array... [2.163s] Computing hash join... [7.165s] Masking low complexity seeds... [0.274s] Searching alignments... [97.511s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.939s] Building query seed array... [2.784s] Computing hash join... [7.271s] Masking low complexity seeds... [0.261s] Searching alignments... [64.411s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.99s] Building query seed array... [2.981s] Computing hash join... [6.672s] Masking low complexity seeds... [0.259s] Searching alignments... [51.871s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.738s] Building query seed array... [2.316s] Computing hash join... [7.17s] Masking low complexity seeds... [0.323s] Searching alignments... [44.227s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.603s] Building query seed array... [2.018s] Computing hash join... [6.556s] Masking low complexity seeds... [0.202s] Searching alignments... [46.913s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 2/2, index chunk 2/4. Building reference seed array... [13.14s] Building query seed array... [2.477s] Computing hash join... [6.859s] Masking low complexity seeds... [0.197s] Searching alignments... [36.244s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.556s] Building query seed array... [2.445s] Computing hash join... [6.927s] Masking low complexity seeds... [0.207s] Searching alignments... [42.636s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.378s] Building query seed array... [2.043s] Computing hash join... [6.883s] Masking low complexity seeds... [0.268s] Searching alignments... [36.189s] Deallocating memory... [0s] Deallocating buffers... [2.229s] Clearing query masking... [1.688s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [6.75s] Sorting trace points... [1.356s] Computing alignments... [33.558s] Deallocating buffers... [0.018s] Loading trace points... [0.001s] Sorting trace points... [1.303s] Computing alignments... [33.718s] Deallocating buffers... [0.014s] Loading trace points... [0.051s] Sorting trace points... [1.255s] Computing alignments... [33.915s] Deallocating buffers... [0.015s] Loading trace points... [0.423s] Sorting trace points... [1.051s] Computing alignments... [34.157s] Deallocating buffers... [0.016s] Loading trace points... [0.068s] Sorting trace points... [1.048s] Computing alignments... [33.346s] Deallocating buffers... [0.016s] Loading trace points... [0.073s] Sorting trace points... [0.958s] Computing alignments... [33.604s] Deallocating buffers... [0.016s] Loading trace points... [0.041s] Sorting trace points... [1.086s] Computing alignments... [33.318s] Deallocating buffers... [0.017s] Loading trace points... [0.066s] Sorting trace points... [1.381s] Computing alignments... [33.185s] Deallocating buffers... [0.143s] Loading trace points... [0.048s] Sorting trace points... [1.324s] Computing alignments... [34.129s] Deallocating buffers... [0.014s] Loading trace points... [0.081s] Sorting trace points... [1.456s] Computing alignments... [34.83s] Deallocating buffers... [0.14s] Loading trace points... [0.066s] Sorting trace points... [1.294s] Computing alignments... [35.109s] Deallocating buffers... [0.018s] Loading trace points... [0.059s] Sorting trace points... [1.383s] Computing alignments... [35.088s] Deallocating buffers... [0.015s] Loading trace points... [0.083s] Sorting trace points... [0.98s] Computing alignments... [35.021s] Deallocating buffers... [0.016s] Loading trace points... [0.072s] Sorting trace points... [1.332s] Computing alignments... [35.189s] Deallocating buffers... [0.015s] Loading trace points... [0.076s] Sorting trace points... [1.391s] Computing alignments... [35.237s] Deallocating buffers... [0.018s] Loading trace points... [0s] Sorting trace points... [1.376s] Computing alignments... [34.644s] Deallocating buffers... [0.202s] Loading trace points... [0s] [576.883s] Deallocating reference... [0.065s] Loading reference sequences... [30.068s] Masking reference... [30.873s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.007s] Building reference histograms... [32.445s] Allocating buffers... [0s] Processing query block 1, reference block 10/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.078s] Building query seed array... [2.151s] Computing hash join... [7.451s] Masking low complexity seeds... [0.375s] Searching alignments... [99.633s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 1/2, index chunk 2/4. Building reference seed array... [13.02s] Building query seed array... [2.742s] Computing hash join... [7.362s] Masking low complexity seeds... [0.298s] Searching alignments... [64.493s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.803s] Building query seed array... [2.769s] Computing hash join... [6.586s] Masking low complexity seeds... [0.215s] Searching alignments... [50.543s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.314s] Building query seed array... [2.377s] Computing hash join... [6.955s] Masking low complexity seeds... [0.258s] Searching alignments... [45.515s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.251s] Building query seed array... [2.12s] Computing hash join... [6.37s] Masking low complexity seeds... [0.198s] Searching alignments... [48.898s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.769s] Building query seed array... [2.289s] Computing hash join... [6.705s] Masking low complexity seeds... [0.213s] Searching alignments... [36.469s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.943s] Building query seed array... [2.423s] Computing hash join... [6.855s] Masking low complexity seeds... [0.205s] Searching alignments... [41.859s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.63s] Building query seed array... [2.09s] Computing hash join... [6.842s] Masking low complexity seeds... [0.304s] Searching alignments... [35.72s] Deallocating memory... [0s] Deallocating buffers... [2.267s] Clearing query masking... [1.677s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [6.641s] Sorting trace points... [1.377s] Computing alignments... [33.64s] Deallocating buffers... [0.015s] Loading trace points... [0.058s] Sorting trace points... [1.288s] Computing alignments... [33.712s] Deallocating buffers... [0.018s] Loading trace points... [0.07s] Sorting trace points... [1.26s] Computing alignments... [33.839s] Deallocating buffers... [0.015s] Loading trace points... [0.058s] Sorting trace points... [1.304s] Computing alignments... [33.46s] Deallocating buffers... [0.014s] Loading trace points... [0.101s] Sorting trace points... [1.458s] Computing alignments... [33.321s] Deallocating buffers... [0.241s] Loading trace points... [0.063s] Sorting trace points... [1.315s] Computing alignments... [33.592s] Deallocating buffers... [0.018s] Loading trace points... [0.059s] Sorting trace points... [1.301s] Computing alignments... [33.484s] Deallocating buffers... [0.015s] Loading trace points... [0.096s] Sorting trace points... [1.253s] Computing alignments... [33.309s] Deallocating buffers... [0.014s] Loading trace points... [0.093s] Sorting trace points... [0.956s] Computing alignments... [34.331s] Deallocating buffers... [0.017s] Loading trace points... [0.078s] Sorting trace points... [1.308s] Computing alignments... [34.955s] Deallocating buffers... [0.051s] Loading trace points... [0.073s] Sorting trace points... [1.263s] Computing alignments... [35.313s] Deallocating buffers... [0.022s] Loading trace points... [0.089s] Sorting trace points... [1.386s] Computing alignments... [35.114s] Deallocating buffers... [0.019s] Loading trace points... [0.085s] Sorting trace points... [1.052s] Computing alignments... [35.088s] Deallocating buffers... [0.017s] Loading trace points... [0s] Sorting trace points... [1.337s] Computing alignments... [35.31s] Deallocating buffers... [0.067s] Loading trace points... [0.083s] Sorting trace points... [1.081s] Computing alignments... [35.39s] Deallocating buffers... [0.018s] Loading trace points... [0s] Sorting trace points... [1.045s] Computing alignments... [34.647s] Deallocating buffers... [0.016s] Loading trace points... [0s] [576.958s] Deallocating reference... [0.062s] Loading reference sequences... [30.418s] Masking reference... [30.878s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.007s] Building reference histograms... [32.916s] Allocating buffers... [0s] Processing query block 1, reference block 11/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.231s] Building query seed array... [2.121s] Computing hash join... [7.155s] Masking low complexity seeds... [0.559s] Searching alignments... [95.266s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 1/2, index chunk 2/4. Building reference seed array... [13.517s] Building query seed array... [2.811s] Computing hash join... [7.252s] Masking low complexity seeds... [0.283s] Searching alignments... [63.131s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.894s] Building query seed array... [2.849s] Computing hash join... [6.748s] Masking low complexity seeds... [0.204s] Searching alignments... [49.981s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 1/2, index chunk 4/4. Building reference seed array... [11.017s] Building query seed array... [2.336s] Computing hash join... [6.874s] Masking low complexity seeds... [0.223s] Searching alignments... [44.056s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.432s] Building query seed array... [2.09s] Computing hash join... [6.835s] Masking low complexity seeds... [0.283s] Searching alignments... [46.156s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.736s] Building query seed array... [2.439s] Computing hash join... [6.297s] Masking low complexity seeds... [0.219s] Searching alignments... [34.643s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.994s] Building query seed array... [2.561s] Computing hash join... [6.394s] Masking low complexity seeds... [0.226s] Searching alignments... [41.207s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.627s] Building query seed array... [2.1s] Computing hash join... [6.269s] Masking low complexity seeds... [0.235s] Searching alignments... [34.319s] Deallocating memory... [0s] Deallocating buffers... [2.146s] Clearing query masking... [1.696s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [6.714s] Sorting trace points... [1.388s] Computing alignments... [33.65s] Deallocating buffers... [0.015s] Loading trace points... [0.108s] Sorting trace points... [1.283s] Computing alignments... [33.727s] Deallocating buffers... [0.106s] Loading trace points... [0.073s] Sorting trace points... [1.296s] Computing alignments... [33.781s] Deallocating buffers... [0.018s] Loading trace points... [0.056s] Sorting trace points... [1.285s] Computing alignments... [33.415s] Deallocating buffers... [0.014s] Loading trace points... [0.063s] Sorting trace points... [1.284s] Computing alignments... [33.169s] Deallocating buffers... [0.017s] Loading trace points... [0.047s] Sorting trace points... [1.235s] Computing alignments... [33.449s] Deallocating buffers... [0.015s] Loading trace points... [0.05s] Sorting trace points... [0.949s] Computing alignments... [33.358s] Deallocating buffers... [0.016s] Loading trace points... [0.055s] Sorting trace points... [1.214s] Computing alignments... [33.273s] Deallocating buffers... [0.017s] Loading trace points... [0.05s] Sorting trace points... [1.086s] Computing alignments... [34.102s] Deallocating buffers... [0.017s] Loading trace points... [0.104s] Sorting trace points... [1.321s] Computing alignments... [34.716s] Deallocating buffers... [0.015s] Loading trace points... [1.273s] Sorting trace points... [1.399s] Computing alignments... [35.198s] Deallocating buffers... [0.018s] Loading trace points... [0.052s] Sorting trace points... [1.398s] Computing alignments... [34.918s] Deallocating buffers... [0.015s] Loading trace points... [0.082s] Sorting trace points... [1.466s] Computing alignments... [35.071s] Deallocating buffers... [0.27s] Loading trace points... [0.093s] Sorting trace points... [1.35s] Computing alignments... [35.009s] Deallocating buffers... [0.018s] Loading trace points... [0.083s] Sorting trace points... [1.496s] Computing alignments... [35.107s] Deallocating buffers... [0.193s] Loading trace points... [0s] Sorting trace points... [1.382s] Computing alignments... [34.524s] Deallocating buffers... [0.09s] Loading trace points... [0s] [577.236s] Deallocating reference... [0.058s] Loading reference sequences... [29.816s] Masking reference... [31.732s] Initializing dictionary... [0.077s] Initializing temporary storage... [0.007s] Building reference histograms... [31.964s] Allocating buffers... [0s] Processing query block 1, reference block 12/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.212s] Building query seed array... [2.115s] Computing hash join... [7.262s] Masking low complexity seeds... [0.25s] Searching alignments... [99.06s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.669s] Building query seed array... [2.848s] Computing hash join... [6.753s] Masking low complexity seeds... [0.225s] Searching alignments... [64.153s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.663s] Building query seed array... [2.739s] Computing hash join... [6.655s] Masking low complexity seeds... [0.213s] Searching alignments... [52.393s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 1/2, index chunk 4/4. Building reference seed array... [11.087s] Building query seed array... [2.358s] Computing hash join... [6.943s] Masking low complexity seeds... [0.227s] Searching alignments... [44.973s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.63s] Building query seed array... [2.074s] Computing hash join... [7.236s] Masking low complexity seeds... [0.264s] Searching alignments... [48.69s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.922s] Building query seed array... [2.584s] Computing hash join... [6.466s] Masking low complexity seeds... [0.251s] Searching alignments... [36.723s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 2/2, index chunk 3/4. Building reference seed array... [14.017s] Building query seed array... [2.489s] Computing hash join... [6.674s] Masking low complexity seeds... [0.212s] Searching alignments... [42.553s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 2/2, index chunk 4/4. Building reference seed array... [11.136s] Building query seed array... [1.984s] Computing hash join... [6.956s] Masking low complexity seeds... [0.332s] Searching alignments... [35.344s] Deallocating memory... [0s] Deallocating buffers... [2.193s] Clearing query masking... [1.697s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [6.797s] Sorting trace points... [1.354s] Computing alignments... [33.68s] Deallocating buffers... [0.017s] Loading trace points... [0.042s] Sorting trace points... [1.463s] Computing alignments... [33.723s] Deallocating buffers... [0.108s] Loading trace points... [0.108s] Sorting trace points... [1.338s] Computing alignments... [33.78s] Deallocating buffers... [0.015s] Loading trace points... [0.067s] Sorting trace points... [1.301s] Computing alignments... [33.508s] Deallocating buffers... [0.014s] Loading trace points... [0.062s] Sorting trace points... [0.935s] Computing alignments... [33.161s] Deallocating buffers... [0.015s] Loading trace points... [0.055s] Sorting trace points... [1.246s] Computing alignments... [33.575s] Deallocating buffers... [0.018s] Loading trace points... [0.902s] Sorting trace points... [1.294s] Computing alignments... [33.432s] Deallocating buffers... [0.014s] Loading trace points... [0.066s] Sorting trace points... [1.292s] Computing alignments... [33.404s] Deallocating buffers... [0.018s] Loading trace points... [0.068s] Sorting trace points... [1.312s] Computing alignments... [34.346s] Deallocating buffers... [0.015s] Loading trace points... [0.108s] Sorting trace points... [1.364s] Computing alignments... [34.917s] Deallocating buffers... [0.018s] Loading trace points... [0.071s] Sorting trace points... [1.268s] Computing alignments... [35.16s] Deallocating buffers... [0.018s] Loading trace points... [0.879s] Sorting trace points... [1.448s] Computing alignments... [35.178s] Deallocating buffers... [0.016s] Loading trace points... [0s] Sorting trace points... [1.497s] Computing alignments... [35.178s] Deallocating buffers... [0.228s] Loading trace points... [0.054s] Sorting trace points... [1.383s] Computing alignments... [35.329s] Deallocating buffers... [0.018s] Loading trace points... [0.081s] Sorting trace points... [1.489s] Computing alignments... [35.406s] Deallocating buffers... [0.069s] Loading trace points... [0s] Sorting trace points... [1.2s] Computing alignments... [34.84s] Deallocating buffers... [0.018s] Loading trace points... [0s] [580.005s] Deallocating reference... [0.057s] Loading reference sequences... [29.217s] Masking reference... [32.136s] Initializing dictionary... [0.077s] Initializing temporary storage... [0.008s] Building reference histograms... [32.078s] Allocating buffers... [0s] Processing query block 1, reference block 13/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.331s] Building query seed array... [2.124s] Computing hash join... [7.38s] Masking low complexity seeds... [0.315s] Searching alignments... [99.654s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 1/2, index chunk 2/4. Building reference seed array... [13.064s] Building query seed array... [2.838s] Computing hash join... [6.812s] Masking low complexity seeds... [0.215s] Searching alignments... [62.919s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 1/2, index chunk 3/4. Building reference seed array... [14.172s] Building query seed array... [2.888s] Computing hash join... [7.332s] Masking low complexity seeds... [0.323s] Searching alignments... [53.022s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.83s] Building query seed array... [2.326s] Computing hash join... [6.812s] Masking low complexity seeds... [0.233s] Searching alignments... [46.504s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.66s] Building query seed array... [2.069s] Computing hash join... [7.118s] Masking low complexity seeds... [0.203s] Searching alignments... [48.653s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.939s] Building query seed array... [2.573s] Computing hash join... [6.441s] Masking low complexity seeds... [0.237s] Searching alignments... [36.498s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.865s] Building query seed array... [2.49s] Computing hash join... [6.286s] Masking low complexity seeds... [0.236s] Searching alignments... [42.661s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.616s] Building query seed array... [2.062s] Computing hash join... [6.47s] Masking low complexity seeds... [0.217s] Searching alignments... [37.092s] Deallocating memory... [0s] Deallocating buffers... [2.334s] Clearing query masking... [1.736s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [8.272s] Sorting trace points... [1.356s] Computing alignments... [33.788s] Deallocating buffers... [0.017s] Loading trace points... [0.043s] Sorting trace points... [1.29s] Computing alignments... [33.822s] Deallocating buffers... [0.014s] Loading trace points... [0.527s] Sorting trace points... [1.487s] Computing alignments... [33.933s] Deallocating buffers... [0.127s] Loading trace points... [0.078s] Sorting trace points... [1.291s] Computing alignments... [33.531s] Deallocating buffers... [0.018s] Loading trace points... [0.065s] Sorting trace points... [1.299s] Computing alignments... [33.289s] Deallocating buffers... [0.083s] Loading trace points... [0.064s] Sorting trace points... [1.289s] Computing alignments... [33.569s] Deallocating buffers... [0.018s] Loading trace points... [0.049s] Sorting trace points... [1.179s] Computing alignments... [33.355s] Deallocating buffers... [0.017s] Loading trace points... [0.053s] Sorting trace points... [1.502s] Computing alignments... [33.278s] Deallocating buffers... [0.26s] Loading trace points... [0.065s] Sorting trace points... [1.138s] Computing alignments... [34.241s] Deallocating buffers... [0.017s] Loading trace points... [0.049s] Sorting trace points... [1.383s] Computing alignments... [34.77s] Deallocating buffers... [0.015s] Loading trace points... [0.064s] Sorting trace points... [1.54s] Computing alignments... [35.093s] Deallocating buffers... [0.083s] Loading trace points... [0.078s] Sorting trace points... [1.382s] Computing alignments... [35.127s] Deallocating buffers... [0.015s] Loading trace points... [0.103s] Sorting trace points... [1.313s] Computing alignments... [34.88s] Deallocating buffers... [0.018s] Loading trace points... [0.093s] Sorting trace points... [1.393s] Computing alignments... [35.136s] Deallocating buffers... [0.018s] Loading trace points... [0.075s] Sorting trace points... [1.25s] Computing alignments... [35.264s] Deallocating buffers... [0.142s] Loading trace points... [0s] Sorting trace points... [1.059s] Computing alignments... [34.611s] Deallocating buffers... [0.017s] Loading trace points... [0s] [579.608s] Deallocating reference... [0.066s] Loading reference sequences... [24.578s] Masking reference... [25.852s] Initializing dictionary... [0.063s] Initializing temporary storage... [0.009s] Building reference histograms... [26.061s] Allocating buffers... [0s] Processing query block 1, reference block 14/14, shape 1/2, index chunk 1/4. Building reference seed array... [8.282s] Building query seed array... [2.155s] Computing hash join... [5.232s] Masking low complexity seeds... [0.507s] Searching alignments... [76.456s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 1/2, index chunk 2/4. Building reference seed array... [10.419s] Building query seed array... [3.046s] Computing hash join... [5.17s] Masking low complexity seeds... [0.21s] Searching alignments... [51.306s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 1/2, index chunk 3/4. Building reference seed array... [10.939s] Building query seed array... [2.764s] Computing hash join... [5.136s] Masking low complexity seeds... [0.2s] Searching alignments... [43.273s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 1/2, index chunk 4/4. Building reference seed array... [8.386s] Building query seed array... [2.412s] Computing hash join... [5.155s] Masking low complexity seeds... [0.197s] Searching alignments... [37.469s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 2/2, index chunk 1/4. Building reference seed array... [8.154s] Building query seed array... [2.026s] Computing hash join... [5.06s] Masking low complexity seeds... [0.195s] Searching alignments... [38.288s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 2/2, index chunk 2/4. Building reference seed array... [10.278s] Building query seed array... [2.44s] Computing hash join... [5.046s] Masking low complexity seeds... [0.199s] Searching alignments... [28.491s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 2/2, index chunk 3/4. Building reference seed array... [10.813s] Building query seed array... [2.596s] Computing hash join... [4.933s] Masking low complexity seeds... [0.184s] Searching alignments... [33.222s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 2/2, index chunk 4/4. Building reference seed array... [8.054s] Building query seed array... [2.2s] Computing hash join... [5.229s] Masking low complexity seeds... [0.192s] Searching alignments... [27.873s] Deallocating memory... [0s] Deallocating buffers... [0.959s] Clearing query masking... [1.704s] Opening temporary output file... [0.018s] Computing alignments... Loading trace points... [11.769s] Sorting trace points... [1.93s] Computing alignments... [53.37s] Deallocating buffers... [0.028s] Loading trace points... [0.128s] Sorting trace points... [2.161s] Computing alignments... [53.252s] Deallocating buffers... [0.07s] Loading trace points... [0.119s] Sorting trace points... [2.047s] Computing alignments... [52.938s] Deallocating buffers... [0.071s] Loading trace points... [0.052s] Sorting trace points... [2.236s] Computing alignments... [53.232s] Deallocating buffers... [0.397s] Loading trace points... [0.106s] Sorting trace points... [2.581s] Computing alignments... [54.807s] Deallocating buffers... [0.23s] Loading trace points... [0.15s] Sorting trace points... [2.515s] Computing alignments... [55.728s] Deallocating buffers... [0.274s] Loading trace points... [0.068s] Sorting trace points... [2.298s] Computing alignments... [55.491s] Deallocating buffers... [0.156s] Loading trace points... [0.054s] Sorting trace points... [1.154s] Computing alignments... [28.063s] Deallocating buffers... [0.012s] Loading trace points... [0s] Sorting trace points... [1.084s] Computing alignments... [27.653s] Deallocating buffers... [0.013s] Loading trace points... [0s] [466.508s] Deallocating reference... [0.051s] Loading reference sequences... [0.088s] Deallocating buffers... [0s] Joining output blocks... Joining output blocks... [2333.43s] [2333.43s] Deallocating queries... [0.083s] Loading query sequences... [0s] Closing the input file... [0s] Closing the output file... Loading dictionary... [3.416s] [4.362s] Closing the database... [0s] Cleaning up... [0s] Total time = 20139.4s Reported 2765482836 pairwise alignments, 2765482836 HSPs. 13558898 queries aligned. DIAMOND BLASTx on /gscratch/srlab/sam/data/P_verrucosa/RNAseq/E6_R1.fastp-trim.20230215.fq.gz complete: E6_R1.blastx.meganized.daa Now MEGANizing E6_R1.blastx.meganized.daa Version MEGAN Community Edition (version 6.22.0, built 19 Feb 2022) Author(s) Daniel H. Huson Copyright (C) 2022 Daniel H. Huson. This program comes with ABSOLUTELY NO WARRANTY. Java version: 17.0.2 Functional classifications to use: EC, EGGNOG, GTDB, INTERPRO2GO, SEED Loading ncbi.map: 2,396,736 Loading ncbi.tre: 2,396,740 Loading ec.map: 8,200 Loading ec.tre: 8,204 Loading eggnog.map: 30,875 Loading eggnog.tre: 30,986 Loading gtdb.map: 240,103 Loading gtdb.tre: 240,107 Loading interpro2go.map: 14,242 Loading interpro2go.tre: 28,907 Loading seed.map: 961 Loading seed.tre: 962 Meganizing: E6_R1.blastx.meganized.daa Meganizing init Annotating DAA file using FAST mode (accession database and first accession per line) Annotating references 10% 20% 30% 40% 50% 60% 70% 100% (495.0s) Writing 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (1.4s) Binning reads Initializing... Initializing binning... Using 'Naive LCA' algorithm for binning: Taxonomy Using Best-Hit algorithm for binning: SEED Using Best-Hit algorithm for binning: EGGNOG Using 'Naive LCA' algorithm for binning: GTDB Using Best-Hit algorithm for binning: EC Using Best-Hit algorithm for binning: INTERPRO2GO Binning reads... Binning reads Analyzing alignments 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (5,351.6s) Total reads: 13,558,898 With hits: 13,558,898 Alignments: 2,760,843,584 Assig. Taxonomy: 12,703,424 Assig. SEED: 113,536 Assig. EGGNOG: 52,290 Assig. GTDB: 397,956 Assig. EC: 2,147,893 Assig. INTERPRO2GO: 1,236,353 MinSupport set to: 6779 Binning reads Applying min-support & disabled filter to Taxonomy... 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (0.6s) Min-supp. changes: 3,703 Binning reads Applying min-support & disabled filter to GTDB... 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (10.9s) Min-supp. changes: 2,678 Binning reads Writing classification tables 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (33.6s) Binning reads Syncing 100% (0.4s) Class. Taxonomy: 67 Class. SEED: 479 Class. EGGNOG: 1,662 Class. GTDB: 17 Class. EC: 2,263 Class. INTERPRO2GO: 7,729 Total time: 5,902s Peak memory: 37.5 of 195.3G MEGANization of E6_R1.blastx.meganized.daa completed. Generating MD5 checksum for /gscratch/srlab/sam/data/P_verrucosa/RNAseq/E6_R2.fastp-trim.20230215.fq.gz... 08734bda9fbe34dcb7c2750f55509eca /gscratch/srlab/sam/data/P_verrucosa/RNAseq/E6_R2.fastp-trim.20230215.fq.gz Running DIAMOND BLASTx on /gscratch/srlab/sam/data/P_verrucosa/RNAseq/E6_R2.fastp-trim.20230215.fq.gz. diamond v2.1.1.155 (C) Max Planck Society for the Advancement of Science Documentation, support and updates available at http://www.diamondsearch.org Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021) #CPU threads: 40 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: Percentage range of top alignment score to report hits: 5 Opening the database... [0.363s] Database: /gscratch/srlab/blastdbs/20230215-ncbi-nr/20230215-ncbi-nr.dmnd (type: Diamond database, sequences: 526308523, letters: 207134680681) Block size = 15000000000 Opening the input file... [0.721s] Opening the output file... [0s] Loading query sequences... [79.166s] Masking queries... [19.262s] Algorithm: Double-indexed Building query histograms... [21.951s] Loading reference sequences... [29.425s] Masking reference... [31.982s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.008s] Building reference histograms... [33.341s] Allocating buffers... [0s] Processing query block 1, reference block 1/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.793s] Building query seed array... [2.088s] Computing hash join... [6.41s] Masking low complexity seeds... [0.247s] Searching alignments... [94.64s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 1/2, index chunk 2/4. Building reference seed array... [13.212s] Building query seed array... [2.96s] Computing hash join... [6.528s] Masking low complexity seeds... [0.243s] Searching alignments... [62.483s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 1/2, index chunk 3/4. Building reference seed array... [14.177s] Building query seed array... [2.814s] Computing hash join... [7.171s] Masking low complexity seeds... [0.257s] Searching alignments... [50.898s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.408s] Building query seed array... [2.366s] Computing hash join... [6.413s] Masking low complexity seeds... [0.258s] Searching alignments... [44.37s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.152s] Building query seed array... [2.03s] Computing hash join... [6.737s] Masking low complexity seeds... [0.313s] Searching alignments... [51.213s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.796s] Building query seed array... [2.48s] Computing hash join... [6.351s] Masking low complexity seeds... [0.253s] Searching alignments... [35.381s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.757s] Building query seed array... [2.412s] Computing hash join... [6.189s] Masking low complexity seeds... [0.241s] Searching alignments... [46.225s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.474s] Building query seed array... [2.054s] Computing hash join... [6.699s] Masking low complexity seeds... [0.299s] Searching alignments... [36.058s] Deallocating memory... [0s] Deallocating buffers... [1.654s] Clearing query masking... [1.652s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [6.801s] Sorting trace points... [1.301s] Computing alignments... [33.874s] Deallocating buffers... [0.014s] Loading trace points... [0.391s] Sorting trace points... [1.337s] Computing alignments... [33.985s] Deallocating buffers... [0.018s] Loading trace points... [0.08s] Sorting trace points... [1.09s] Computing alignments... [33.973s] Deallocating buffers... [0.015s] Loading trace points... [0.075s] Sorting trace points... [1.234s] Computing alignments... [33.487s] Deallocating buffers... [0.014s] Loading trace points... [0.047s] Sorting trace points... [1.011s] Computing alignments... [33.401s] Deallocating buffers... [0.016s] Loading trace points... [0.041s] Sorting trace points... [0.981s] Computing alignments... [33.654s] Deallocating buffers... [0.016s] Loading trace points... [0.068s] Sorting trace points... [1.091s] Computing alignments... [33.494s] Deallocating buffers... [0.017s] Loading trace points... [0.071s] Sorting trace points... [1.228s] Computing alignments... [33.144s] Deallocating buffers... [0.017s] Loading trace points... [0.053s] Sorting trace points... [1.337s] Computing alignments... [34.854s] Deallocating buffers... [0.018s] Loading trace points... [0.001s] Sorting trace points... [0.974s] Computing alignments... [35.833s] Deallocating buffers... [0.017s] Loading trace points... [0.068s] Sorting trace points... [1.122s] Computing alignments... [36.245s] Deallocating buffers... [0.017s] Loading trace points... [0.055s] Sorting trace points... [1.39s] Computing alignments... [35.986s] Deallocating buffers... [0.068s] Loading trace points... [0.058s] Sorting trace points... [1.109s] Computing alignments... [35.971s] Deallocating buffers... [0.018s] Loading trace points... [0.064s] Sorting trace points... [1.372s] Computing alignments... [36.059s] Deallocating buffers... [0.019s] Loading trace points... [0s] Sorting trace points... [1.377s] Computing alignments... [36.252s] Deallocating buffers... [0.016s] Loading trace points... [0s] Sorting trace points... [1.362s] Computing alignments... [35.707s] Deallocating buffers... [0.015s] Loading trace points... [0s] [583.532s] Deallocating reference... [0.057s] Loading reference sequences... [32.563s] Masking reference... [32.198s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.008s] Building reference histograms... [32.287s] Allocating buffers... [0s] Processing query block 1, reference block 2/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.227s] Building query seed array... [2.177s] Computing hash join... [6.733s] Masking low complexity seeds... [0.56s] Searching alignments... [89.043s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 1/2, index chunk 2/4. Building reference seed array... [13.113s] Building query seed array... [2.923s] Computing hash join... [6.001s] Masking low complexity seeds... [0.255s] Searching alignments... [61.193s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.93s] Building query seed array... [2.793s] Computing hash join... [6.489s] Masking low complexity seeds... [0.348s] Searching alignments... [49.435s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.894s] Building query seed array... [2.486s] Computing hash join... [5.846s] Masking low complexity seeds... [0.281s] Searching alignments... [42.942s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.857s] Building query seed array... [2.046s] Computing hash join... [5.814s] Masking low complexity seeds... [0.253s] Searching alignments... [50.291s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.476s] Building query seed array... [2.486s] Computing hash join... [6.174s] Masking low complexity seeds... [0.267s] Searching alignments... [33.771s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.255s] Building query seed array... [2.453s] Computing hash join... [6.298s] Masking low complexity seeds... [0.246s] Searching alignments... [43.673s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.471s] Building query seed array... [2.146s] Computing hash join... [5.673s] Masking low complexity seeds... [0.254s] Searching alignments... [34.589s] Deallocating memory... [0s] Deallocating buffers... [2.119s] Clearing query masking... [1.684s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [6.83s] Sorting trace points... [1.372s] Computing alignments... [33.476s] Deallocating buffers... [0.014s] Loading trace points... [0.149s] Sorting trace points... [1.099s] Computing alignments... [33.651s] Deallocating buffers... [0.017s] Loading trace points... [0.086s] Sorting trace points... [0.957s] Computing alignments... [34.439s] Deallocating buffers... [0.016s] Loading trace points... [0.052s] Sorting trace points... [1.176s] Computing alignments... [33.474s] Deallocating buffers... [0.014s] Loading trace points... [0.078s] Sorting trace points... [1.177s] Computing alignments... [33.143s] Deallocating buffers... [0.015s] Loading trace points... [0.098s] Sorting trace points... [1.02s] Computing alignments... [33.817s] Deallocating buffers... [0.015s] Loading trace points... [0.054s] Sorting trace points... [1.284s] Computing alignments... [33.2s] Deallocating buffers... [0.014s] Loading trace points... [0.066s] Sorting trace points... [1.251s] Computing alignments... [32.9s] Deallocating buffers... [0.014s] Loading trace points... [0.07s] Sorting trace points... [1.307s] Computing alignments... [34.79s] Deallocating buffers... [0.018s] Loading trace points... [0.099s] Sorting trace points... [1.296s] Computing alignments... [35.594s] Deallocating buffers... [0.016s] Loading trace points... [0.065s] Sorting trace points... [1.391s] Computing alignments... [35.934s] Deallocating buffers... [0.016s] Loading trace points... [0.047s] Sorting trace points... [1.345s] Computing alignments... [35.826s] Deallocating buffers... [0.015s] Loading trace points... [0.065s] Sorting trace points... [1.47s] Computing alignments... [35.858s] Deallocating buffers... [0.019s] Loading trace points... [0.103s] Sorting trace points... [1.472s] Computing alignments... [35.92s] Deallocating buffers... [0.147s] Loading trace points... [0.077s] Sorting trace points... [1.473s] Computing alignments... [35.995s] Deallocating buffers... [0.039s] Loading trace points... [0s] Sorting trace points... [1.346s] Computing alignments... [35.687s] Deallocating buffers... [0.02s] Loading trace points... [0s] [582.588s] Deallocating reference... [0.122s] Loading reference sequences... [31.936s] Masking reference... [30.96s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.008s] Building reference histograms... [32.356s] Allocating buffers... [0s] Processing query block 1, reference block 3/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.265s] Building query seed array... [2.154s] Computing hash join... [6.832s] Masking low complexity seeds... [0.494s] Searching alignments... [96.298s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 1/2, index chunk 2/4. Building reference seed array... [13.169s] Building query seed array... [2.937s] Computing hash join... [6.805s] Masking low complexity seeds... [0.31s] Searching alignments... [63.842s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.967s] Building query seed array... [2.824s] Computing hash join... [6.495s] Masking low complexity seeds... [0.273s] Searching alignments... [50.934s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.021s] Building query seed array... [2.36s] Computing hash join... [6.416s] Masking low complexity seeds... [0.235s] Searching alignments... [45.692s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.344s] Building query seed array... [2.165s] Computing hash join... [6.32s] Masking low complexity seeds... [0.254s] Searching alignments... [51.151s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.512s] Building query seed array... [2.356s] Computing hash join... [7.079s] Masking low complexity seeds... [0.306s] Searching alignments... [36.3s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.904s] Building query seed array... [2.552s] Computing hash join... [6.733s] Masking low complexity seeds... [0.24s] Searching alignments... [47.007s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.366s] Building query seed array... [2.1s] Computing hash join... [6.292s] Masking low complexity seeds... [0.244s] Searching alignments... [35.547s] Deallocating memory... [0s] Deallocating buffers... [1.542s] Clearing query masking... [1.601s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [6.741s] Sorting trace points... [1.358s] Computing alignments... [33.496s] Deallocating buffers... [0.015s] Loading trace points... [0.1s] Sorting trace points... [1.3s] Computing alignments... [33.642s] Deallocating buffers... [0.014s] Loading trace points... [0.077s] Sorting trace points... [1.301s] Computing alignments... [33.921s] Deallocating buffers... [0.018s] Loading trace points... [0.083s] Sorting trace points... [1.199s] Computing alignments... [33.192s] Deallocating buffers... [0.017s] Loading trace points... [0.064s] Sorting trace points... [1.223s] Computing alignments... [33.197s] Deallocating buffers... [0.014s] Loading trace points... [0.044s] Sorting trace points... [1.298s] Computing alignments... [33.397s] Deallocating buffers... [0.017s] Loading trace points... [0.075s] Sorting trace points... [1.219s] Computing alignments... [33.228s] Deallocating buffers... [0.175s] Loading trace points... [0.103s] Sorting trace points... [1.264s] Computing alignments... [32.915s] Deallocating buffers... [0.014s] Loading trace points... [0.071s] Sorting trace points... [1.3s] Computing alignments... [34.527s] Deallocating buffers... [0.015s] Loading trace points... [0s] Sorting trace points... [1.008s] Computing alignments... [35.682s] Deallocating buffers... [0.017s] Loading trace points... [0.085s] Sorting trace points... [1.366s] Computing alignments... [35.887s] Deallocating buffers... [0.016s] Loading trace points... [0.066s] Sorting trace points... [1.406s] Computing alignments... [35.933s] Deallocating buffers... [0.019s] Loading trace points... [0.074s] Sorting trace points... [1.397s] Computing alignments... [35.713s] Deallocating buffers... [0.015s] Loading trace points... [0.093s] Sorting trace points... [1.384s] Computing alignments... [35.906s] Deallocating buffers... [0.016s] Loading trace points... [0.078s] Sorting trace points... [1.357s] Computing alignments... [36.017s] Deallocating buffers... [0.015s] Loading trace points... [0s] Sorting trace points... [1.362s] Computing alignments... [35.699s] Deallocating buffers... [0.016s] Loading trace points... [0s] [581.49s] Deallocating reference... [0.063s] Loading reference sequences... [29.212s] Masking reference... [30.941s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.007s] Building reference histograms... [32.127s] Allocating buffers... [0s] Processing query block 1, reference block 4/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.32s] Building query seed array... [2.045s] Computing hash join... [6.534s] Masking low complexity seeds... [0.257s] Searching alignments... [92.725s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 1/2, index chunk 2/4. Building reference seed array... [13.291s] Building query seed array... [3.08s] Computing hash join... [6.747s] Masking low complexity seeds... [0.265s] Searching alignments... [61.065s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.427s] Building query seed array... [2.895s] Computing hash join... [7.178s] Masking low complexity seeds... [0.337s] Searching alignments... [51.622s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.362s] Building query seed array... [2.304s] Computing hash join... [6.43s] Masking low complexity seeds... [0.269s] Searching alignments... [44.538s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.198s] Building query seed array... [2.039s] Computing hash join... [6.665s] Masking low complexity seeds... [0.307s] Searching alignments... [50.609s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.684s] Building query seed array... [2.351s] Computing hash join... [6.265s] Masking low complexity seeds... [0.263s] Searching alignments... [35.257s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.733s] Building query seed array... [2.809s] Computing hash join... [6.331s] Masking low complexity seeds... [0.253s] Searching alignments... [44.001s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.432s] Building query seed array... [2.067s] Computing hash join... [6.51s] Masking low complexity seeds... [0.226s] Searching alignments... [34.813s] Deallocating memory... [0s] Deallocating buffers... [1.64s] Clearing query masking... [1.695s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [6.708s] Sorting trace points... [1.337s] Computing alignments... [33.485s] Deallocating buffers... [0.015s] Loading trace points... [0.089s] Sorting trace points... [1.25s] Computing alignments... [33.711s] Deallocating buffers... [0.015s] Loading trace points... [0.076s] Sorting trace points... [1.316s] Computing alignments... [33.785s] Deallocating buffers... [0.018s] Loading trace points... [0.077s] Sorting trace points... [1.458s] Computing alignments... [33.26s] Deallocating buffers... [0.253s] Loading trace points... [0.085s] Sorting trace points... [1.34s] Computing alignments... [33.145s] Deallocating buffers... [0.047s] Loading trace points... [0.001s] Sorting trace points... [1.387s] Computing alignments... [33.445s] Deallocating buffers... [0.083s] Loading trace points... [0.07s] Sorting trace points... [1.271s] Computing alignments... [33.293s] Deallocating buffers... [0.014s] Loading trace points... [0.06s] Sorting trace points... [0.997s] Computing alignments... [32.922s] Deallocating buffers... [0.016s] Loading trace points... [0.07s] Sorting trace points... [1.33s] Computing alignments... [34.553s] Deallocating buffers... [0.015s] Loading trace points... [0.076s] Sorting trace points... [1.367s] Computing alignments... [35.771s] Deallocating buffers... [0.015s] Loading trace points... [0.08s] Sorting trace points... [1.395s] Computing alignments... [35.977s] Deallocating buffers... [0.015s] Loading trace points... [0.05s] Sorting trace points... [1.333s] Computing alignments... [35.92s] Deallocating buffers... [0.015s] Loading trace points... [0.094s] Sorting trace points... [1.376s] Computing alignments... [35.72s] Deallocating buffers... [0.019s] Loading trace points... [0.042s] Sorting trace points... [1.086s] Computing alignments... [35.916s] Deallocating buffers... [0.151s] Loading trace points... [0.334s] Sorting trace points... [1.228s] Computing alignments... [35.973s] Deallocating buffers... [0.016s] Loading trace points... [0s] Sorting trace points... [1.329s] Computing alignments... [35.599s] Deallocating buffers... [0.019s] Loading trace points... [0s] [582.119s] Deallocating reference... [0.056s] Loading reference sequences... [250.624s] Masking reference... [31.557s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.008s] Building reference histograms... [32.197s] Allocating buffers... [0s] Processing query block 1, reference block 5/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.299s] Building query seed array... [2.213s] Computing hash join... [6.754s] Masking low complexity seeds... [0.403s] Searching alignments... [92.342s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 1/2, index chunk 2/4. Building reference seed array... [13.172s] Building query seed array... [2.971s] Computing hash join... [6.762s] Masking low complexity seeds... [0.243s] Searching alignments... [61.149s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.598s] Building query seed array... [2.907s] Computing hash join... [7.191s] Masking low complexity seeds... [0.35s] Searching alignments... [50.011s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.063s] Building query seed array... [2.533s] Computing hash join... [6.401s] Masking low complexity seeds... [0.266s] Searching alignments... [43.652s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.787s] Building query seed array... [2.144s] Computing hash join... [6.645s] Masking low complexity seeds... [0.245s] Searching alignments... [50.586s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.732s] Building query seed array... [2.386s] Computing hash join... [6.32s] Masking low complexity seeds... [0.259s] Searching alignments... [34.363s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.623s] Building query seed array... [2.465s] Computing hash join... [6.453s] Masking low complexity seeds... [0.247s] Searching alignments... [44.308s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.67s] Building query seed array... [2.145s] Computing hash join... [6.546s] Masking low complexity seeds... [0.251s] Searching alignments... [34.39s] Deallocating memory... [0s] Deallocating buffers... [1.663s] Clearing query masking... [1.711s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [6.671s] Sorting trace points... [1.359s] Computing alignments... [33.559s] Deallocating buffers... [0.016s] Loading trace points... [0.064s] Sorting trace points... [1.042s] Computing alignments... [33.901s] Deallocating buffers... [0.016s] Loading trace points... [0.077s] Sorting trace points... [0.973s] Computing alignments... [33.871s] Deallocating buffers... [0.016s] Loading trace points... [0.08s] Sorting trace points... [1.293s] Computing alignments... [33.186s] Deallocating buffers... [0.102s] Loading trace points... [0.081s] Sorting trace points... [1.32s] Computing alignments... [33.169s] Deallocating buffers... [0.224s] Loading trace points... [0s] Sorting trace points... [1.023s] Computing alignments... [33.395s] Deallocating buffers... [0.017s] Loading trace points... [0.067s] Sorting trace points... [1.259s] Computing alignments... [33.19s] Deallocating buffers... [0.023s] Loading trace points... [0.073s] Sorting trace points... [1.242s] Computing alignments... [32.957s] Deallocating buffers... [0.017s] Loading trace points... [0.057s] Sorting trace points... [1.358s] Computing alignments... [34.514s] Deallocating buffers... [0.015s] Loading trace points... [0.067s] Sorting trace points... [1.261s] Computing alignments... [35.649s] Deallocating buffers... [0.016s] Loading trace points... [0.087s] Sorting trace points... [1.294s] Computing alignments... [36.01s] Deallocating buffers... [0.016s] Loading trace points... [0.067s] Sorting trace points... [1.446s] Computing alignments... [35.886s] Deallocating buffers... [0.072s] Loading trace points... [0.064s] Sorting trace points... [1.429s] Computing alignments... [35.885s] Deallocating buffers... [0.211s] Loading trace points... [0.056s] Sorting trace points... [1.382s] Computing alignments... [35.961s] Deallocating buffers... [0.022s] Loading trace points... [0.075s] Sorting trace points... [1.474s] Computing alignments... [36.085s] Deallocating buffers... [0.213s] Loading trace points... [0s] Sorting trace points... [1.327s] Computing alignments... [35.635s] Deallocating buffers... [0.016s] Loading trace points... [0s] [582.068s] Deallocating reference... [0.071s] Loading reference sequences... [29.34s] Masking reference... [32.129s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.007s] Building reference histograms... [32.01s] Allocating buffers... [0s] Processing query block 1, reference block 6/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.009s] Building query seed array... [2.114s] Computing hash join... [7.031s] Masking low complexity seeds... [0.257s] Searching alignments... [88.86s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.472s] Building query seed array... [3.074s] Computing hash join... [6.341s] Masking low complexity seeds... [0.263s] Searching alignments... [59.47s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 1/2, index chunk 3/4. Building reference seed array... [14.094s] Building query seed array... [2.868s] Computing hash join... [6.566s] Masking low complexity seeds... [0.266s] Searching alignments... [50.109s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.839s] Building query seed array... [2.311s] Computing hash join... [6.551s] Masking low complexity seeds... [0.268s] Searching alignments... [42.686s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.531s] Building query seed array... [2.169s] Computing hash join... [6.227s] Masking low complexity seeds... [0.251s] Searching alignments... [49.515s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.693s] Building query seed array... [2.377s] Computing hash join... [7.051s] Masking low complexity seeds... [0.226s] Searching alignments... [34.097s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.438s] Building query seed array... [2.674s] Computing hash join... [7.207s] Masking low complexity seeds... [0.231s] Searching alignments... [42.696s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.061s] Building query seed array... [2.196s] Computing hash join... [6.371s] Masking low complexity seeds... [0.242s] Searching alignments... [33.573s] Deallocating memory... [0s] Deallocating buffers... [1.828s] Clearing query masking... [1.709s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [6.727s] Sorting trace points... [1.405s] Computing alignments... [33.321s] Deallocating buffers... [0.015s] Loading trace points... [0.067s] Sorting trace points... [1.298s] Computing alignments... [33.405s] Deallocating buffers... [0.014s] Loading trace points... [0.082s] Sorting trace points... [1.22s] Computing alignments... [33.56s] Deallocating buffers... [0.017s] Loading trace points... [0.053s] Sorting trace points... [1.399s] Computing alignments... [33.037s] Deallocating buffers... [0.249s] Loading trace points... [0.001s] Sorting trace points... [0.998s] Computing alignments... [32.736s] Deallocating buffers... [0.015s] Loading trace points... [0.07s] Sorting trace points... [1.151s] Computing alignments... [33.067s] Deallocating buffers... [0.016s] Loading trace points... [0.058s] Sorting trace points... [1.126s] Computing alignments... [33.024s] Deallocating buffers... [0.017s] Loading trace points... [0.071s] Sorting trace points... [1.449s] Computing alignments... [32.685s] Deallocating buffers... [0.227s] Loading trace points... [0.069s] Sorting trace points... [1.306s] Computing alignments... [34.306s] Deallocating buffers... [0.015s] Loading trace points... [0.058s] Sorting trace points... [1.414s] Computing alignments... [35.409s] Deallocating buffers... [0.015s] Loading trace points... [0.075s] Sorting trace points... [1.341s] Computing alignments... [35.664s] Deallocating buffers... [0.019s] Loading trace points... [0s] Sorting trace points... [1.35s] Computing alignments... [35.575s] Deallocating buffers... [0.015s] Loading trace points... [0.052s] Sorting trace points... [1.264s] Computing alignments... [35.623s] Deallocating buffers... [0.256s] Loading trace points... [0.067s] Sorting trace points... [1.29s] Computing alignments... [35.512s] Deallocating buffers... [0.016s] Loading trace points... [0.078s] Sorting trace points... [1.557s] Computing alignments... [35.653s] Deallocating buffers... [0.21s] Loading trace points... [0s] Sorting trace points... [1.289s] Computing alignments... [35.237s] Deallocating buffers... [0.016s] Loading trace points... [0s] [577.607s] Deallocating reference... [0.064s] Loading reference sequences... [29.144s] Masking reference... [32.17s] Initializing dictionary... [0.077s] Initializing temporary storage... [0.007s] Building reference histograms... [32.268s] Allocating buffers... [0s] Processing query block 1, reference block 7/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.092s] Building query seed array... [2.115s] Computing hash join... [7.117s] Masking low complexity seeds... [0.294s] Searching alignments... [96.072s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 1/2, index chunk 2/4. Building reference seed array... [13.394s] Building query seed array... [2.917s] Computing hash join... [6.897s] Masking low complexity seeds... [0.254s] Searching alignments... [63.969s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 1/2, index chunk 3/4. Building reference seed array... [14.627s] Building query seed array... [2.937s] Computing hash join... [7.347s] Masking low complexity seeds... [0.24s] Searching alignments... [51.169s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.572s] Building query seed array... [2.455s] Computing hash join... [6.829s] Masking low complexity seeds... [0.269s] Searching alignments... [44.437s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.762s] Building query seed array... [2.213s] Computing hash join... [6.898s] Masking low complexity seeds... [0.296s] Searching alignments... [51.875s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 2/2, index chunk 2/4. Building reference seed array... [13.114s] Building query seed array... [2.463s] Computing hash join... [6.403s] Masking low complexity seeds... [0.249s] Searching alignments... [36.718s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.239s] Building query seed array... [2.509s] Computing hash join... [6.44s] Masking low complexity seeds... [0.236s] Searching alignments... [46.132s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.541s] Building query seed array... [2.137s] Computing hash join... [6.774s] Masking low complexity seeds... [0.333s] Searching alignments... [34.999s] Deallocating memory... [0s] Deallocating buffers... [1.853s] Clearing query masking... [1.691s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [6.67s] Sorting trace points... [1.341s] Computing alignments... [33.611s] Deallocating buffers... [0.015s] Loading trace points... [0.085s] Sorting trace points... [0.941s] Computing alignments... [33.849s] Deallocating buffers... [0.016s] Loading trace points... [0s] Sorting trace points... [1.258s] Computing alignments... [33.915s] Deallocating buffers... [0.017s] Loading trace points... [0.074s] Sorting trace points... [1.017s] Computing alignments... [33.052s] Deallocating buffers... [0.017s] Loading trace points... [0.063s] Sorting trace points... [1.264s] Computing alignments... [33.09s] Deallocating buffers... [0.015s] Loading trace points... [0.039s] Sorting trace points... [1.431s] Computing alignments... [33.655s] Deallocating buffers... [0.284s] Loading trace points... [0.095s] Sorting trace points... [1.329s] Computing alignments... [33.355s] Deallocating buffers... [0.017s] Loading trace points... [0.133s] Sorting trace points... [0.933s] Computing alignments... [33.002s] Deallocating buffers... [0.016s] Loading trace points... [0.745s] Sorting trace points... [1.083s] Computing alignments... [34.722s] Deallocating buffers... [0.016s] Loading trace points... [0.048s] Sorting trace points... [1.24s] Computing alignments... [35.811s] Deallocating buffers... [0.018s] Loading trace points... [0.083s] Sorting trace points... [1.069s] Computing alignments... [36.132s] Deallocating buffers... [0.018s] Loading trace points... [0.066s] Sorting trace points... [1.383s] Computing alignments... [35.977s] Deallocating buffers... [0.019s] Loading trace points... [0.078s] Sorting trace points... [1.319s] Computing alignments... [35.849s] Deallocating buffers... [0.015s] Loading trace points... [0.047s] Sorting trace points... [1.363s] Computing alignments... [36.061s] Deallocating buffers... [0.015s] Loading trace points... [0.001s] Sorting trace points... [1.406s] Computing alignments... [36.2s] Deallocating buffers... [0.015s] Loading trace points... [0s] Sorting trace points... [1.379s] Computing alignments... [35.781s] Deallocating buffers... [0.015s] Loading trace points... [0s] [582.834s] Deallocating reference... [0.057s] Loading reference sequences... [29.552s] Masking reference... [32.253s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.008s] Building reference histograms... [32.243s] Allocating buffers... [0s] Processing query block 1, reference block 8/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.134s] Building query seed array... [2.083s] Computing hash join... [7.034s] Masking low complexity seeds... [0.303s] Searching alignments... [93.891s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.968s] Building query seed array... [3.094s] Computing hash join... [6.477s] Masking low complexity seeds... [0.258s] Searching alignments... [62.298s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.501s] Building query seed array... [2.853s] Computing hash join... [7.27s] Masking low complexity seeds... [0.296s] Searching alignments... [50.545s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.815s] Building query seed array... [2.427s] Computing hash join... [6.611s] Masking low complexity seeds... [0.275s] Searching alignments... [44.234s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.317s] Building query seed array... [2.116s] Computing hash join... [6.661s] Masking low complexity seeds... [0.225s] Searching alignments... [49.137s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 2/2, index chunk 2/4. Building reference seed array... [13.502s] Building query seed array... [2.454s] Computing hash join... [6.48s] Masking low complexity seeds... [0.239s] Searching alignments... [36.536s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.683s] Building query seed array... [2.503s] Computing hash join... [6.556s] Masking low complexity seeds... [0.241s] Searching alignments... [46.427s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.524s] Building query seed array... [2.141s] Computing hash join... [6.781s] Masking low complexity seeds... [0.246s] Searching alignments... [35.947s] Deallocating memory... [0s] Deallocating buffers... [1.974s] Clearing query masking... [1.703s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [6.733s] Sorting trace points... [1.35s] Computing alignments... [33.633s] Deallocating buffers... [0.015s] Loading trace points... [0.098s] Sorting trace points... [1.23s] Computing alignments... [33.782s] Deallocating buffers... [0.015s] Loading trace points... [0.084s] Sorting trace points... [1.411s] Computing alignments... [33.81s] Deallocating buffers... [0.104s] Loading trace points... [0.075s] Sorting trace points... [0.978s] Computing alignments... [33.057s] Deallocating buffers... [0.016s] Loading trace points... [0.068s] Sorting trace points... [1.279s] Computing alignments... [32.956s] Deallocating buffers... [0.014s] Loading trace points... [0.067s] Sorting trace points... [1.288s] Computing alignments... [33.25s] Deallocating buffers... [0.014s] Loading trace points... [0.254s] Sorting trace points... [1.281s] Computing alignments... [33.294s] Deallocating buffers... [0.039s] Loading trace points... [0.086s] Sorting trace points... [1.154s] Computing alignments... [32.902s] Deallocating buffers... [0.083s] Loading trace points... [0.076s] Sorting trace points... [1.402s] Computing alignments... [34.588s] Deallocating buffers... [0.015s] Loading trace points... [0.002s] Sorting trace points... [1.567s] Computing alignments... [35.896s] Deallocating buffers... [0.328s] Loading trace points... [0.135s] Sorting trace points... [1.393s] Computing alignments... [36.026s] Deallocating buffers... [0.019s] Loading trace points... [0.06s] Sorting trace points... [1.424s] Computing alignments... [35.777s] Deallocating buffers... [0.019s] Loading trace points... [0.085s] Sorting trace points... [1.563s] Computing alignments... [35.858s] Deallocating buffers... [0.277s] Loading trace points... [0.064s] Sorting trace points... [1.436s] Computing alignments... [35.953s] Deallocating buffers... [0.019s] Loading trace points... [0.001s] Sorting trace points... [1.426s] Computing alignments... [36.125s] Deallocating buffers... [0.015s] Loading trace points... [0s] Sorting trace points... [1.379s] Computing alignments... [35.701s] Deallocating buffers... [0.016s] Loading trace points... [0s] [583.309s] Deallocating reference... [0.058s] Loading reference sequences... [29.075s] Masking reference... [31.012s] Initializing dictionary... [0.077s] Initializing temporary storage... [0.007s] Building reference histograms... [32.803s] Allocating buffers... [0s] Processing query block 1, reference block 9/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.508s] Building query seed array... [2.174s] Computing hash join... [7.377s] Masking low complexity seeds... [0.559s] Searching alignments... [92.109s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 1/2, index chunk 2/4. Building reference seed array... [13.013s] Building query seed array... [2.754s] Computing hash join... [6.954s] Masking low complexity seeds... [0.296s] Searching alignments... [62.352s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.735s] Building query seed array... [2.722s] Computing hash join... [7.419s] Masking low complexity seeds... [0.253s] Searching alignments... [52.413s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.504s] Building query seed array... [2.365s] Computing hash join... [7.057s] Masking low complexity seeds... [0.261s] Searching alignments... [45.798s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.739s] Building query seed array... [2.068s] Computing hash join... [6.635s] Masking low complexity seeds... [0.234s] Searching alignments... [51.631s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.917s] Building query seed array... [2.482s] Computing hash join... [6.905s] Masking low complexity seeds... [0.342s] Searching alignments... [35.987s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.729s] Building query seed array... [2.532s] Computing hash join... [6.934s] Masking low complexity seeds... [0.233s] Searching alignments... [44.657s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.628s] Building query seed array... [2.124s] Computing hash join... [6.429s] Masking low complexity seeds... [0.29s] Searching alignments... [35.064s] Deallocating memory... [0s] Deallocating buffers... [1.994s] Clearing query masking... [1.682s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [6.773s] Sorting trace points... [1.348s] Computing alignments... [33.339s] Deallocating buffers... [0.016s] Loading trace points... [0.065s] Sorting trace points... [0.908s] Computing alignments... [33.716s] Deallocating buffers... [0.016s] Loading trace points... [0.072s] Sorting trace points... [1.027s] Computing alignments... [33.844s] Deallocating buffers... [0.016s] Loading trace points... [0.07s] Sorting trace points... [1.332s] Computing alignments... [32.987s] Deallocating buffers... [0.014s] Loading trace points... [0.069s] Sorting trace points... [0.91s] Computing alignments... [32.963s] Deallocating buffers... [0.015s] Loading trace points... [0.098s] Sorting trace points... [1.288s] Computing alignments... [33.233s] Deallocating buffers... [0.014s] Loading trace points... [0.068s] Sorting trace points... [1.25s] Computing alignments... [33.173s] Deallocating buffers... [0.014s] Loading trace points... [0.08s] Sorting trace points... [1.255s] Computing alignments... [32.891s] Deallocating buffers... [0.017s] Loading trace points... [0.055s] Sorting trace points... [1.331s] Computing alignments... [34.389s] Deallocating buffers... [0.015s] Loading trace points... [0.077s] Sorting trace points... [1.377s] Computing alignments... [35.478s] Deallocating buffers... [0.019s] Loading trace points... [0.078s] Sorting trace points... [1.429s] Computing alignments... [35.762s] Deallocating buffers... [0.016s] Loading trace points... [0.07s] Sorting trace points... [1.363s] Computing alignments... [35.645s] Deallocating buffers... [0.016s] Loading trace points... [0.084s] Sorting trace points... [1.229s] Computing alignments... [35.406s] Deallocating buffers... [0.016s] Loading trace points... [0.001s] Sorting trace points... [1.342s] Computing alignments... [35.569s] Deallocating buffers... [0.015s] Loading trace points... [0.071s] Sorting trace points... [1.297s] Computing alignments... [35.756s] Deallocating buffers... [0.016s] Loading trace points... [0s] Sorting trace points... [1.574s] Computing alignments... [35.512s] Deallocating buffers... [0.329s] Loading trace points... [0s] [578.43s] Deallocating reference... [0.062s] Loading reference sequences... [29.167s] Masking reference... [30.979s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.007s] Building reference histograms... [33.189s] Allocating buffers... [0s] Processing query block 1, reference block 10/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.635s] Building query seed array... [2.153s] Computing hash join... [7.332s] Masking low complexity seeds... [0.56s] Searching alignments... [94.044s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.937s] Building query seed array... [2.982s] Computing hash join... [7.073s] Masking low complexity seeds... [0.306s] Searching alignments... [60.24s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 1/2, index chunk 3/4. Building reference seed array... [14.256s] Building query seed array... [2.914s] Computing hash join... [6.746s] Masking low complexity seeds... [0.239s] Searching alignments... [52.157s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.389s] Building query seed array... [2.36s] Computing hash join... [7.014s] Masking low complexity seeds... [0.264s] Searching alignments... [45.574s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.585s] Building query seed array... [2.156s] Computing hash join... [6.365s] Masking low complexity seeds... [0.229s] Searching alignments... [51.87s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 2/2, index chunk 2/4. Building reference seed array... [13.184s] Building query seed array... [2.546s] Computing hash join... [7.124s] Masking low complexity seeds... [0.318s] Searching alignments... [34.251s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.888s] Building query seed array... [2.563s] Computing hash join... [7.125s] Masking low complexity seeds... [0.23s] Searching alignments... [44.802s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.506s] Building query seed array... [2.209s] Computing hash join... [6.216s] Masking low complexity seeds... [0.244s] Searching alignments... [35.001s] Deallocating memory... [0s] Deallocating buffers... [2.206s] Clearing query masking... [1.811s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [6.704s] Sorting trace points... [1.378s] Computing alignments... [33.491s] Deallocating buffers... [0.017s] Loading trace points... [0.085s] Sorting trace points... [1.091s] Computing alignments... [33.684s] Deallocating buffers... [0.125s] Loading trace points... [0.085s] Sorting trace points... [1.317s] Computing alignments... [33.733s] Deallocating buffers... [0.015s] Loading trace points... [0.075s] Sorting trace points... [1.299s] Computing alignments... [33.04s] Deallocating buffers... [0.218s] Loading trace points... [0.064s] Sorting trace points... [1.283s] Computing alignments... [32.924s] Deallocating buffers... [0.018s] Loading trace points... [0.002s] Sorting trace points... [1.282s] Computing alignments... [33.109s] Deallocating buffers... [0.018s] Loading trace points... [0.057s] Sorting trace points... [1.275s] Computing alignments... [33.06s] Deallocating buffers... [0.014s] Loading trace points... [0.074s] Sorting trace points... [1.276s] Computing alignments... [32.876s] Deallocating buffers... [0.017s] Loading trace points... [0.07s] Sorting trace points... [1.514s] Computing alignments... [34.362s] Deallocating buffers... [0.246s] Loading trace points... [0.078s] Sorting trace points... [1.437s] Computing alignments... [35.516s] Deallocating buffers... [0.019s] Loading trace points... [0.087s] Sorting trace points... [1.378s] Computing alignments... [35.99s] Deallocating buffers... [0.015s] Loading trace points... [0.071s] Sorting trace points... [1.142s] Computing alignments... [35.823s] Deallocating buffers... [0.016s] Loading trace points... [0.078s] Sorting trace points... [1.442s] Computing alignments... [35.618s] Deallocating buffers... [0.058s] Loading trace points... [0.085s] Sorting trace points... [1.046s] Computing alignments... [35.882s] Deallocating buffers... [0.028s] Loading trace points... [0.085s] Sorting trace points... [1.178s] Computing alignments... [35.997s] Deallocating buffers... [0.018s] Loading trace points... [0s] Sorting trace points... [1.501s] Computing alignments... [35.89s] Deallocating buffers... [0.286s] Loading trace points... [0s] [580.89s] Deallocating reference... [0.061s] Loading reference sequences... [29.677s] Masking reference... [30.877s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.008s] Building reference histograms... [32.594s] Allocating buffers... [0.001s] Processing query block 1, reference block 11/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.165s] Building query seed array... [2.021s] Computing hash join... [7.246s] Masking low complexity seeds... [0.586s] Searching alignments... [89.771s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 1/2, index chunk 2/4. Building reference seed array... [13.121s] Building query seed array... [2.859s] Computing hash join... [6.536s] Masking low complexity seeds... [0.26s] Searching alignments... [61.314s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.401s] Building query seed array... [2.741s] Computing hash join... [7.199s] Masking low complexity seeds... [0.325s] Searching alignments... [50.349s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 1/2, index chunk 4/4. Building reference seed array... [11.259s] Building query seed array... [2.386s] Computing hash join... [6.837s] Masking low complexity seeds... [0.289s] Searching alignments... [43.479s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.486s] Building query seed array... [2.048s] Computing hash join... [6.933s] Masking low complexity seeds... [0.252s] Searching alignments... [49.563s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.99s] Building query seed array... [2.37s] Computing hash join... [6.442s] Masking low complexity seeds... [0.268s] Searching alignments... [34.394s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.997s] Building query seed array... [2.522s] Computing hash join... [6.409s] Masking low complexity seeds... [0.276s] Searching alignments... [44.495s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.449s] Building query seed array... [2.18s] Computing hash join... [6.835s] Masking low complexity seeds... [0.243s] Searching alignments... [34.108s] Deallocating memory... [0s] Deallocating buffers... [2.159s] Clearing query masking... [1.692s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [6.636s] Sorting trace points... [1.386s] Computing alignments... [33.359s] Deallocating buffers... [0.015s] Loading trace points... [0.107s] Sorting trace points... [1.326s] Computing alignments... [33.492s] Deallocating buffers... [0.014s] Loading trace points... [0.83s] Sorting trace points... [1.571s] Computing alignments... [33.697s] Deallocating buffers... [0.218s] Loading trace points... [0.066s] Sorting trace points... [1.249s] Computing alignments... [32.877s] Deallocating buffers... [0.017s] Loading trace points... [0.054s] Sorting trace points... [1.248s] Computing alignments... [32.82s] Deallocating buffers... [0.017s] Loading trace points... [0.092s] Sorting trace points... [1.011s] Computing alignments... [33.169s] Deallocating buffers... [0.015s] Loading trace points... [0.069s] Sorting trace points... [1.391s] Computing alignments... [32.95s] Deallocating buffers... [0.076s] Loading trace points... [0.068s] Sorting trace points... [1.425s] Computing alignments... [32.716s] Deallocating buffers... [0.235s] Loading trace points... [0.092s] Sorting trace points... [1.391s] Computing alignments... [34.251s] Deallocating buffers... [0.084s] Loading trace points... [0.09s] Sorting trace points... [1.576s] Computing alignments... [35.399s] Deallocating buffers... [0.272s] Loading trace points... [0.101s] Sorting trace points... [1.394s] Computing alignments... [35.638s] Deallocating buffers... [0.094s] Loading trace points... [0.06s] Sorting trace points... [1.406s] Computing alignments... [35.51s] Deallocating buffers... [0.175s] Loading trace points... [0.067s] Sorting trace points... [1.575s] Computing alignments... [35.543s] Deallocating buffers... [0.117s] Loading trace points... [0.104s] Sorting trace points... [1.375s] Computing alignments... [35.66s] Deallocating buffers... [0.015s] Loading trace points... [0.11s] Sorting trace points... [1.151s] Computing alignments... [35.833s] Deallocating buffers... [0.018s] Loading trace points... [0s] Sorting trace points... [1.4s] Computing alignments... [35.546s] Deallocating buffers... [0.205s] Loading trace points... [0s] [580.643s] Deallocating reference... [0.061s] Loading reference sequences... [29.213s] Masking reference... [30.876s] Initializing dictionary... [0.077s] Initializing temporary storage... [0.007s] Building reference histograms... [32.204s] Allocating buffers... [0s] Processing query block 1, reference block 12/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.14s] Building query seed array... [2.153s] Computing hash join... [6.889s] Masking low complexity seeds... [0.276s] Searching alignments... [93.645s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.407s] Building query seed array... [3.022s] Computing hash join... [6.809s] Masking low complexity seeds... [0.263s] Searching alignments... [59.949s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.36s] Building query seed array... [2.856s] Computing hash join... [7.302s] Masking low complexity seeds... [0.39s] Searching alignments... [51.693s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.737s] Building query seed array... [2.45s] Computing hash join... [6.92s] Masking low complexity seeds... [0.295s] Searching alignments... [44.743s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.443s] Building query seed array... [2.082s] Computing hash join... [7.046s] Masking low complexity seeds... [0.313s] Searching alignments... [51.335s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.862s] Building query seed array... [2.425s] Computing hash join... [6.729s] Masking low complexity seeds... [0.24s] Searching alignments... [35.383s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.608s] Building query seed array... [2.499s] Computing hash join... [6.964s] Masking low complexity seeds... [0.239s] Searching alignments... [46.217s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.719s] Building query seed array... [2.212s] Computing hash join... [6.636s] Masking low complexity seeds... [0.238s] Searching alignments... [35.153s] Deallocating memory... [0s] Deallocating buffers... [2.171s] Clearing query masking... [1.689s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [6.8s] Sorting trace points... [1.357s] Computing alignments... [33.458s] Deallocating buffers... [0.017s] Loading trace points... [0.085s] Sorting trace points... [1.101s] Computing alignments... [33.634s] Deallocating buffers... [0.139s] Loading trace points... [0.145s] Sorting trace points... [0.991s] Computing alignments... [33.629s] Deallocating buffers... [0.016s] Loading trace points... [0.076s] Sorting trace points... [1.02s] Computing alignments... [32.953s] Deallocating buffers... [0.015s] Loading trace points... [0.05s] Sorting trace points... [1.109s] Computing alignments... [32.797s] Deallocating buffers... [0.014s] Loading trace points... [0.051s] Sorting trace points... [1.199s] Computing alignments... [33.115s] Deallocating buffers... [0.015s] Loading trace points... [0.074s] Sorting trace points... [0.991s] Computing alignments... [33.048s] Deallocating buffers... [0.015s] Loading trace points... [0.067s] Sorting trace points... [1.25s] Computing alignments... [32.77s] Deallocating buffers... [0.095s] Loading trace points... [0.075s] Sorting trace points... [1.065s] Computing alignments... [34.486s] Deallocating buffers... [0.077s] Loading trace points... [0.078s] Sorting trace points... [1.54s] Computing alignments... [35.481s] Deallocating buffers... [0.159s] Loading trace points... [0.117s] Sorting trace points... [1.465s] Computing alignments... [35.786s] Deallocating buffers... [0.016s] Loading trace points... [0.068s] Sorting trace points... [1.032s] Computing alignments... [35.714s] Deallocating buffers... [0.018s] Loading trace points... [0.075s] Sorting trace points... [1.221s] Computing alignments... [35.654s] Deallocating buffers... [0.16s] Loading trace points... [0.074s] Sorting trace points... [1.454s] Computing alignments... [35.867s] Deallocating buffers... [0.015s] Loading trace points... [0.074s] Sorting trace points... [1.425s] Computing alignments... [35.974s] Deallocating buffers... [0.016s] Loading trace points... [0s] Sorting trace points... [1.347s] Computing alignments... [35.464s] Deallocating buffers... [0.015s] Loading trace points... [0s] [578.274s] Deallocating reference... [0.059s] Loading reference sequences... [29.254s] Masking reference... [32.118s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.007s] Building reference histograms... [31.84s] Allocating buffers... [0s] Processing query block 1, reference block 13/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.17s] Building query seed array... [2.143s] Computing hash join... [7.211s] Masking low complexity seeds... [0.605s] Searching alignments... [94.599s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 1/2, index chunk 2/4. Building reference seed array... [13.348s] Building query seed array... [2.982s] Computing hash join... [6.847s] Masking low complexity seeds... [0.252s] Searching alignments... [61.633s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.661s] Building query seed array... [2.842s] Computing hash join... [7.349s] Masking low complexity seeds... [0.285s] Searching alignments... [52.245s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 1/2, index chunk 4/4. Building reference seed array... [11.017s] Building query seed array... [2.432s] Computing hash join... [6.874s] Masking low complexity seeds... [0.252s] Searching alignments... [44.545s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.577s] Building query seed array... [2.061s] Computing hash join... [7.117s] Masking low complexity seeds... [0.326s] Searching alignments... [52.256s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 2/2, index chunk 2/4. Building reference seed array... [13.124s] Building query seed array... [2.349s] Computing hash join... [7.019s] Masking low complexity seeds... [0.244s] Searching alignments... [35.089s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.57s] Building query seed array... [2.656s] Computing hash join... [6.816s] Masking low complexity seeds... [0.236s] Searching alignments... [46.643s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.45s] Building query seed array... [2.17s] Computing hash join... [6.939s] Masking low complexity seeds... [0.248s] Searching alignments... [35.482s] Deallocating memory... [0s] Deallocating buffers... [2.373s] Clearing query masking... [1.693s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [6.734s] Sorting trace points... [1.361s] Computing alignments... [33.36s] Deallocating buffers... [0.015s] Loading trace points... [0.095s] Sorting trace points... [0.92s] Computing alignments... [33.619s] Deallocating buffers... [0.016s] Loading trace points... [0.079s] Sorting trace points... [1.493s] Computing alignments... [33.766s] Deallocating buffers... [0.273s] Loading trace points... [0.103s] Sorting trace points... [0.983s] Computing alignments... [33.08s] Deallocating buffers... [0.016s] Loading trace points... [0.048s] Sorting trace points... [0.943s] Computing alignments... [32.959s] Deallocating buffers... [0.015s] Loading trace points... [0.001s] Sorting trace points... [0.951s] Computing alignments... [33.338s] Deallocating buffers... [0.016s] Loading trace points... [0.099s] Sorting trace points... [1.468s] Computing alignments... [33.278s] Deallocating buffers... [0.261s] Loading trace points... [0.07s] Sorting trace points... [1.455s] Computing alignments... [32.891s] Deallocating buffers... [0.164s] Loading trace points... [0.06s] Sorting trace points... [1.336s] Computing alignments... [34.57s] Deallocating buffers... [0.015s] Loading trace points... [0.073s] Sorting trace points... [1.33s] Computing alignments... [35.416s] Deallocating buffers... [0.019s] Loading trace points... [0.824s] Sorting trace points... [1.416s] Computing alignments... [35.838s] Deallocating buffers... [0.016s] Loading trace points... [0.056s] Sorting trace points... [1.355s] Computing alignments... [35.578s] Deallocating buffers... [0.019s] Loading trace points... [0.066s] Sorting trace points... [1.422s] Computing alignments... [35.634s] Deallocating buffers... [0.069s] Loading trace points... [0.054s] Sorting trace points... [1.406s] Computing alignments... [35.827s] Deallocating buffers... [0.015s] Loading trace points... [0.084s] Sorting trace points... [1.442s] Computing alignments... [35.946s] Deallocating buffers... [0.016s] Loading trace points... [0s] Sorting trace points... [1.098s] Computing alignments... [35.461s] Deallocating buffers... [0.016s] Loading trace points... [0s] [580.487s] Deallocating reference... [0.061s] Loading reference sequences... [23.506s] Masking reference... [25.998s] Initializing dictionary... [0.063s] Initializing temporary storage... [0.009s] Building reference histograms... [25.882s] Allocating buffers... [0s] Processing query block 1, reference block 14/14, shape 1/2, index chunk 1/4. Building reference seed array... [8.439s] Building query seed array... [2.149s] Computing hash join... [4.812s] Masking low complexity seeds... [0.242s] Searching alignments... [73.465s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 1/2, index chunk 2/4. Building reference seed array... [10.593s] Building query seed array... [3.005s] Computing hash join... [5.446s] Masking low complexity seeds... [0.272s] Searching alignments... [50.367s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 1/2, index chunk 3/4. Building reference seed array... [11.022s] Building query seed array... [2.917s] Computing hash join... [5.421s] Masking low complexity seeds... [0.341s] Searching alignments... [40.675s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 1/2, index chunk 4/4. Building reference seed array... [8.268s] Building query seed array... [2.278s] Computing hash join... [5.478s] Masking low complexity seeds... [0.231s] Searching alignments... [35.704s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 2/2, index chunk 1/4. Building reference seed array... [8.561s] Building query seed array... [2.171s] Computing hash join... [5.257s] Masking low complexity seeds... [0.221s] Searching alignments... [42.288s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 2/2, index chunk 2/4. Building reference seed array... [9.92s] Building query seed array... [2.381s] Computing hash join... [5.158s] Masking low complexity seeds... [0.218s] Searching alignments... [28.393s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 2/2, index chunk 3/4. Building reference seed array... [10.945s] Building query seed array... [2.621s] Computing hash join... [5.201s] Masking low complexity seeds... [0.225s] Searching alignments... [36.014s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 2/2, index chunk 4/4. Building reference seed array... [8.158s] Building query seed array... [2.043s] Computing hash join... [5.22s] Masking low complexity seeds... [0.23s] Searching alignments... [28.786s] Deallocating memory... [0s] Deallocating buffers... [1.021s] Clearing query masking... [1.687s] Opening temporary output file... [0.026s] Computing alignments... Loading trace points... [11.387s] Sorting trace points... [2.293s] Computing alignments... [52.979s] Deallocating buffers... [0.023s] Loading trace points... [0.114s] Sorting trace points... [2.13s] Computing alignments... [52.606s] Deallocating buffers... [0.029s] Loading trace points... [0.15s] Sorting trace points... [2.249s] Computing alignments... [52.61s] Deallocating buffers... [0.435s] Loading trace points... [0.134s] Sorting trace points... [2.109s] Computing alignments... [52.152s] Deallocating buffers... [0.027s] Loading trace points... [0.056s] Sorting trace points... [2.459s] Computing alignments... [55.107s] Deallocating buffers... [0.168s] Loading trace points... [0.083s] Sorting trace points... [1.012s] Computing alignments... [28.421s] Deallocating buffers... [0.097s] Loading trace points... [0.079s] Sorting trace points... [1.062s] Computing alignments... [28.318s] Deallocating buffers... [0.016s] Loading trace points... [0.069s] Sorting trace points... [0.857s] Computing alignments... [28.186s] Deallocating buffers... [0.014s] Loading trace points... [0.046s] Sorting trace points... [0.822s] Computing alignments... [28.309s] Deallocating buffers... [0.015s] Loading trace points... [0.042s] Sorting trace points... [0.834s] Computing alignments... [28.418s] Deallocating buffers... [0.014s] Loading trace points... [0s] Sorting trace points... [1.09s] Computing alignments... [28.101s] Deallocating buffers... [0.016s] Loading trace points... [0s] [465.285s] Deallocating reference... [0.046s] Loading reference sequences... [0.079s] Deallocating buffers... [0s] Joining output blocks... Joining output blocks... [2331.92s] [2331.92s] Deallocating queries... [0.073s] Loading query sequences... [0s] Closing the input file... [0s] Closing the output file... Loading dictionary... [3.679s] [4.862s] Closing the database... [0s] Cleaning up... [0s] Total time = 20152.4s Reported 2726070631 pairwise alignments, 2726070631 HSPs. 13905863 queries aligned. DIAMOND BLASTx on /gscratch/srlab/sam/data/P_verrucosa/RNAseq/E6_R2.fastp-trim.20230215.fq.gz complete: E6_R2.blastx.meganized.daa Now MEGANizing E6_R2.blastx.meganized.daa Version MEGAN Community Edition (version 6.22.0, built 19 Feb 2022) Author(s) Daniel H. Huson Copyright (C) 2022 Daniel H. Huson. This program comes with ABSOLUTELY NO WARRANTY. Java version: 17.0.2 Functional classifications to use: EC, EGGNOG, GTDB, INTERPRO2GO, SEED Loading ncbi.map: 2,396,736 Loading ncbi.tre: 2,396,740 Loading ec.map: 8,200 Loading ec.tre: 8,204 Loading eggnog.map: 30,875 Loading eggnog.tre: 30,986 Loading gtdb.map: 240,103 Loading gtdb.tre: 240,107 Loading interpro2go.map: 14,242 Loading interpro2go.tre: 28,907 Loading seed.map: 961 Loading seed.tre: 962 Meganizing: E6_R2.blastx.meganized.daa Meganizing init Annotating DAA file using FAST mode (accession database and first accession per line) Annotating references 10% 20% 30% 40% 50% 60% 70% 100% (477.1s) Writing 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (1.2s) Binning reads Initializing... Initializing binning... Using 'Naive LCA' algorithm for binning: Taxonomy Using Best-Hit algorithm for binning: SEED Using Best-Hit algorithm for binning: EGGNOG Using 'Naive LCA' algorithm for binning: GTDB Using Best-Hit algorithm for binning: EC Using Best-Hit algorithm for binning: INTERPRO2GO Binning reads... Binning reads Analyzing alignments 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (5,286.0s) Total reads: 13,905,863 With hits: 13,905,863 Alignments: 2,720,372,693 Assig. Taxonomy: 12,993,203 Assig. SEED: 109,202 Assig. EGGNOG: 50,386 Assig. GTDB: 389,245 Assig. EC: 2,191,620 Assig. INTERPRO2GO: 1,246,941 MinSupport set to: 6952 Binning reads Applying min-support & disabled filter to Taxonomy... 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (0.6s) Min-supp. changes: 3,703 Binning reads Applying min-support & disabled filter to GTDB... 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (12.5s) Min-supp. changes: 2,869 Binning reads Writing classification tables 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (35.7s) Binning reads Syncing 100% (0.3s) Class. Taxonomy: 70 Class. SEED: 476 Class. EGGNOG: 1,658 Class. GTDB: 18 Class. EC: 2,255 Class. INTERPRO2GO: 7,818 Total time: 5,822s Peak memory: 37.3 of 195.3G MEGANization of E6_R2.blastx.meganized.daa completed. Generating MD5 checksum for /gscratch/srlab/sam/data/P_verrucosa/RNAseq/E7_R1.fastp-trim.20230215.fq.gz... 1ee117b63c3b95d264edc3014bc9b4c6 /gscratch/srlab/sam/data/P_verrucosa/RNAseq/E7_R1.fastp-trim.20230215.fq.gz Running DIAMOND BLASTx on /gscratch/srlab/sam/data/P_verrucosa/RNAseq/E7_R1.fastp-trim.20230215.fq.gz. diamond v2.1.1.155 (C) Max Planck Society for the Advancement of Science Documentation, support and updates available at http://www.diamondsearch.org Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021) #CPU threads: 40 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: Percentage range of top alignment score to report hits: 5 Opening the database... [0.323s] Database: /gscratch/srlab/blastdbs/20230215-ncbi-nr/20230215-ncbi-nr.dmnd (type: Diamond database, sequences: 526308523, letters: 207134680681) Block size = 15000000000 Opening the input file... [0.821s] Opening the output file... [0s] Loading query sequences... [73.366s] Masking queries... [18.615s] Algorithm: Double-indexed Building query histograms... [17.93s] Loading reference sequences... [31.495s] Masking reference... [32.176s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.007s] Building reference histograms... [32.956s] Allocating buffers... [0s] Processing query block 1, reference block 1/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.391s] Building query seed array... [2.052s] Computing hash join... [6.33s] Masking low complexity seeds... [0.219s] Searching alignments... [74.754s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.417s] Building query seed array... [2.983s] Computing hash join... [6.326s] Masking low complexity seeds... [0.233s] Searching alignments... [47.089s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.588s] Building query seed array... [2.762s] Computing hash join... [5.94s] Masking low complexity seeds... [0.231s] Searching alignments... [40.879s] Deallocating memory... [0.001s] Processing query block 1, reference block 1/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.674s] Building query seed array... [2.233s] Computing hash join... [6.013s] Masking low complexity seeds... [0.24s] Searching alignments... [36.844s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 2/2, index chunk 1/4. Building reference seed array... [9.969s] Building query seed array... [2.072s] Computing hash join... [5.875s] Masking low complexity seeds... [0.221s] Searching alignments... [37.74s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.477s] Building query seed array... [2.484s] Computing hash join... [6.039s] Masking low complexity seeds... [0.229s] Searching alignments... [30.373s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.782s] Building query seed array... [2.503s] Computing hash join... [6.116s] Masking low complexity seeds... [0.215s] Searching alignments... [33.331s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.032s] Building query seed array... [1.971s] Computing hash join... [6.092s] Masking low complexity seeds... [0.22s] Searching alignments... [28.958s] Deallocating memory... [0s] Deallocating buffers... [1.565s] Clearing query masking... [1.633s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [6.093s] Sorting trace points... [1.18s] Computing alignments... [30.361s] Deallocating buffers... [0.016s] Loading trace points... [0.072s] Sorting trace points... [1.113s] Computing alignments... [30.46s] Deallocating buffers... [0.013s] Loading trace points... [0.062s] Sorting trace points... [1.122s] Computing alignments... [30.232s] Deallocating buffers... [0.013s] Loading trace points... [0.071s] Sorting trace points... [0.97s] Computing alignments... [30.84s] Deallocating buffers... [0.014s] Loading trace points... [0.062s] Sorting trace points... [1.157s] Computing alignments... [30.926s] Deallocating buffers... [0.013s] Loading trace points... [0.055s] Sorting trace points... [1.145s] Computing alignments... [31.003s] Deallocating buffers... [0.016s] Loading trace points... [0.087s] Sorting trace points... [1.159s] Computing alignments... [30.669s] Deallocating buffers... [0.013s] Loading trace points... [0.067s] Sorting trace points... [1.121s] Computing alignments... [30.438s] Deallocating buffers... [0.013s] Loading trace points... [0.044s] Sorting trace points... [1.168s] Computing alignments... [31.033s] Deallocating buffers... [0.013s] Loading trace points... [0.066s] Sorting trace points... [1.13s] Computing alignments... [31.351s] Deallocating buffers... [0.013s] Loading trace points... [0.059s] Sorting trace points... [1.221s] Computing alignments... [31.349s] Deallocating buffers... [0.016s] Loading trace points... [0.055s] Sorting trace points... [1.16s] Computing alignments... [31.592s] Deallocating buffers... [0.016s] Loading trace points... [0.088s] Sorting trace points... [0.921s] Computing alignments... [31.642s] Deallocating buffers... [0.014s] Loading trace points... [0.052s] Sorting trace points... [1.176s] Computing alignments... [31.715s] Deallocating buffers... [0.017s] Loading trace points... [0.07s] Sorting trace points... [1.216s] Computing alignments... [31.61s] Deallocating buffers... [0.017s] Loading trace points... [0s] Sorting trace points... [1.187s] Computing alignments... [31.453s] Deallocating buffers... [0.016s] Loading trace points... [0s] [522.221s] Deallocating reference... [0.056s] Loading reference sequences... [29.469s] Masking reference... [30.987s] Initializing dictionary... [0.077s] Initializing temporary storage... [0.007s] Building reference histograms... [33.264s] Allocating buffers... [0.001s] Processing query block 1, reference block 2/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.34s] Building query seed array... [2.021s] Computing hash join... [6.185s] Masking low complexity seeds... [0.227s] Searching alignments... [71.675s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 1/2, index chunk 2/4. Building reference seed array... [13.568s] Building query seed array... [2.924s] Computing hash join... [5.747s] Masking low complexity seeds... [0.266s] Searching alignments... [47.934s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.585s] Building query seed array... [2.678s] Computing hash join... [5.757s] Masking low complexity seeds... [0.243s] Searching alignments... [41.968s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.71s] Building query seed array... [2.16s] Computing hash join... [5.81s] Masking low complexity seeds... [0.278s] Searching alignments... [37.334s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.338s] Building query seed array... [2.095s] Computing hash join... [5.52s] Masking low complexity seeds... [0.237s] Searching alignments... [36.915s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 2/2, index chunk 2/4. Building reference seed array... [13.062s] Building query seed array... [2.382s] Computing hash join... [5.633s] Masking low complexity seeds... [0.241s] Searching alignments... [30.441s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.588s] Building query seed array... [2.486s] Computing hash join... [5.586s] Masking low complexity seeds... [0.2s] Searching alignments... [33.011s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.592s] Building query seed array... [2.005s] Computing hash join... [5.813s] Masking low complexity seeds... [0.219s] Searching alignments... [28.416s] Deallocating memory... [0s] Deallocating buffers... [1.979s] Clearing query masking... [1.593s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [6.121s] Sorting trace points... [1.249s] Computing alignments... [29.902s] Deallocating buffers... [0.013s] Loading trace points... [0.056s] Sorting trace points... [1.137s] Computing alignments... [30.106s] Deallocating buffers... [0.016s] Loading trace points... [0.056s] Sorting trace points... [0.87s] Computing alignments... [29.726s] Deallocating buffers... [0.014s] Loading trace points... [0.044s] Sorting trace points... [1.158s] Computing alignments... [30.518s] Deallocating buffers... [0.016s] Loading trace points... [0.077s] Sorting trace points... [1.163s] Computing alignments... [30.449s] Deallocating buffers... [0.013s] Loading trace points... [0.051s] Sorting trace points... [1.149s] Computing alignments... [30.467s] Deallocating buffers... [0.013s] Loading trace points... [0.054s] Sorting trace points... [1.165s] Computing alignments... [30.186s] Deallocating buffers... [0.016s] Loading trace points... [0.042s] Sorting trace points... [1.145s] Computing alignments... [29.979s] Deallocating buffers... [0.016s] Loading trace points... [0.08s] Sorting trace points... [1.152s] Computing alignments... [30.651s] Deallocating buffers... [0.016s] Loading trace points... [0.057s] Sorting trace points... [0.883s] Computing alignments... [30.967s] Deallocating buffers... [0.015s] Loading trace points... [0.048s] Sorting trace points... [0.896s] Computing alignments... [31.02s] Deallocating buffers... [0.015s] Loading trace points... [0.068s] Sorting trace points... [0.999s] Computing alignments... [31.271s] Deallocating buffers... [0.014s] Loading trace points... [0.079s] Sorting trace points... [1.211s] Computing alignments... [31.313s] Deallocating buffers... [0.013s] Loading trace points... [0.98s] Sorting trace points... [1.267s] Computing alignments... [31.405s] Deallocating buffers... [0.016s] Loading trace points... [0.081s] Sorting trace points... [1.156s] Computing alignments... [31.275s] Deallocating buffers... [0.016s] Loading trace points... [0s] Sorting trace points... [1.196s] Computing alignments... [31.111s] Deallocating buffers... [0.013s] Loading trace points... [0s] [516.387s] Deallocating reference... [0.058s] Loading reference sequences... [29.318s] Masking reference... [32.067s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.007s] Building reference histograms... [32.403s] Allocating buffers... [0.001s] Processing query block 1, reference block 3/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.296s] Building query seed array... [1.991s] Computing hash join... [6.951s] Masking low complexity seeds... [0.525s] Searching alignments... [76.496s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.719s] Building query seed array... [2.756s] Computing hash join... [6.693s] Masking low complexity seeds... [0.228s] Searching alignments... [47.008s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.453s] Building query seed array... [2.671s] Computing hash join... [6.456s] Masking low complexity seeds... [0.22s] Searching alignments... [41.262s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.775s] Building query seed array... [2.344s] Computing hash join... [6.461s] Masking low complexity seeds... [0.251s] Searching alignments... [37.176s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.264s] Building query seed array... [2.128s] Computing hash join... [6.28s] Masking low complexity seeds... [0.217s] Searching alignments... [37.739s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.652s] Building query seed array... [2.421s] Computing hash join... [6.243s] Masking low complexity seeds... [0.208s] Searching alignments... [30.037s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.64s] Building query seed array... [2.522s] Computing hash join... [6.177s] Masking low complexity seeds... [0.208s] Searching alignments... [33.119s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.426s] Building query seed array... [1.989s] Computing hash join... [6.426s] Masking low complexity seeds... [0.22s] Searching alignments... [29.163s] Deallocating memory... [0s] Deallocating buffers... [1.706s] Clearing query masking... [1.6s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [6.024s] Sorting trace points... [1.232s] Computing alignments... [29.907s] Deallocating buffers... [0.013s] Loading trace points... [0.067s] Sorting trace points... [0.85s] Computing alignments... [30.052s] Deallocating buffers... [0.015s] Loading trace points... [0.084s] Sorting trace points... [1.134s] Computing alignments... [29.773s] Deallocating buffers... [0.016s] Loading trace points... [0.102s] Sorting trace points... [1.127s] Computing alignments... [30.41s] Deallocating buffers... [0.016s] Loading trace points... [0.082s] Sorting trace points... [0.892s] Computing alignments... [30.454s] Deallocating buffers... [0.014s] Loading trace points... [0.049s] Sorting trace points... [1.17s] Computing alignments... [30.533s] Deallocating buffers... [0.016s] Loading trace points... [0.09s] Sorting trace points... [1.053s] Computing alignments... [30.37s] Deallocating buffers... [0.013s] Loading trace points... [0.074s] Sorting trace points... [1.012s] Computing alignments... [30.231s] Deallocating buffers... [0.013s] Loading trace points... [0.054s] Sorting trace points... [1.083s] Computing alignments... [30.607s] Deallocating buffers... [0.013s] Loading trace points... [0.071s] Sorting trace points... [1.187s] Computing alignments... [31.149s] Deallocating buffers... [0.013s] Loading trace points... [0.068s] Sorting trace points... [1.021s] Computing alignments... [30.996s] Deallocating buffers... [0.014s] Loading trace points... [0.097s] Sorting trace points... [0.96s] Computing alignments... [31.439s] Deallocating buffers... [0.014s] Loading trace points... [0.671s] Sorting trace points... [1.261s] Computing alignments... [31.501s] Deallocating buffers... [0.016s] Loading trace points... [0.059s] Sorting trace points... [1.219s] Computing alignments... [31.545s] Deallocating buffers... [0.013s] Loading trace points... [0.094s] Sorting trace points... [1.23s] Computing alignments... [31.406s] Deallocating buffers... [0.013s] Loading trace points... [0s] Sorting trace points... [1.187s] Computing alignments... [31.342s] Deallocating buffers... [0.014s] Loading trace points... [0s] [517.509s] Deallocating reference... [0.058s] Loading reference sequences... [29.241s] Masking reference... [32.093s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.007s] Building reference histograms... [31.692s] Allocating buffers... [0.001s] Processing query block 1, reference block 4/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.44s] Building query seed array... [2.116s] Computing hash join... [6.619s] Masking low complexity seeds... [0.235s] Searching alignments... [71.112s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.846s] Building query seed array... [2.816s] Computing hash join... [6.897s] Masking low complexity seeds... [0.215s] Searching alignments... [49.009s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.634s] Building query seed array... [2.831s] Computing hash join... [6.451s] Masking low complexity seeds... [0.265s] Searching alignments... [42.282s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.553s] Building query seed array... [2.18s] Computing hash join... [6.722s] Masking low complexity seeds... [0.264s] Searching alignments... [37.575s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.42s] Building query seed array... [2.07s] Computing hash join... [6.642s] Masking low complexity seeds... [0.259s] Searching alignments... [37.241s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 2/2, index chunk 2/4. Building reference seed array... [13.082s] Building query seed array... [2.324s] Computing hash join... [7.061s] Masking low complexity seeds... [0.315s] Searching alignments... [30.403s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.856s] Building query seed array... [2.348s] Computing hash join... [6.983s] Masking low complexity seeds... [0.321s] Searching alignments... [33.266s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.582s] Building query seed array... [1.943s] Computing hash join... [6.946s] Masking low complexity seeds... [0.226s] Searching alignments... [28.943s] Deallocating memory... [0s] Deallocating buffers... [1.843s] Clearing query masking... [1.6s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [6.145s] Sorting trace points... [1.223s] Computing alignments... [30.276s] Deallocating buffers... [0.013s] Loading trace points... [0.069s] Sorting trace points... [0.853s] Computing alignments... [30.32s] Deallocating buffers... [0.015s] Loading trace points... [0.067s] Sorting trace points... [0.987s] Computing alignments... [30.071s] Deallocating buffers... [0.013s] Loading trace points... [0.048s] Sorting trace points... [1.169s] Computing alignments... [30.613s] Deallocating buffers... [0.013s] Loading trace points... [0.056s] Sorting trace points... [1.158s] Computing alignments... [30.658s] Deallocating buffers... [0.013s] Loading trace points... [0.047s] Sorting trace points... [1.173s] Computing alignments... [30.764s] Deallocating buffers... [0.013s] Loading trace points... [0.082s] Sorting trace points... [1.137s] Computing alignments... [30.569s] Deallocating buffers... [0.016s] Loading trace points... [0.068s] Sorting trace points... [1.132s] Computing alignments... [30.207s] Deallocating buffers... [0.012s] Loading trace points... [0.053s] Sorting trace points... [1.143s] Computing alignments... [30.809s] Deallocating buffers... [0.016s] Loading trace points... [0.968s] Sorting trace points... [1.26s] Computing alignments... [31.125s] Deallocating buffers... [0.013s] Loading trace points... [0.067s] Sorting trace points... [0.884s] Computing alignments... [31.176s] Deallocating buffers... [0.015s] Loading trace points... [0.059s] Sorting trace points... [1.174s] Computing alignments... [31.396s] Deallocating buffers... [0.013s] Loading trace points... [0.059s] Sorting trace points... [1.183s] Computing alignments... [31.451s] Deallocating buffers... [0.014s] Loading trace points... [0.07s] Sorting trace points... [1.206s] Computing alignments... [31.595s] Deallocating buffers... [0.016s] Loading trace points... [0.072s] Sorting trace points... [1.025s] Computing alignments... [31.491s] Deallocating buffers... [0.015s] Loading trace points... [0s] Sorting trace points... [1.178s] Computing alignments... [31.29s] Deallocating buffers... [0.016s] Loading trace points... [0s] [519.999s] Deallocating reference... [0.059s] Loading reference sequences... [29.835s] Masking reference... [30.879s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.007s] Building reference histograms... [33.356s] Allocating buffers... [0s] Processing query block 1, reference block 5/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.471s] Building query seed array... [2.136s] Computing hash join... [7.032s] Masking low complexity seeds... [0.534s] Searching alignments... [72.876s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 1/2, index chunk 2/4. Building reference seed array... [13.102s] Building query seed array... [2.961s] Computing hash join... [7.078s] Masking low complexity seeds... [0.29s] Searching alignments... [46.684s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 1/2, index chunk 3/4. Building reference seed array... [14.115s] Building query seed array... [2.847s] Computing hash join... [6.28s] Masking low complexity seeds... [0.235s] Searching alignments... [41.887s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.037s] Building query seed array... [2.362s] Computing hash join... [6.549s] Masking low complexity seeds... [0.241s] Searching alignments... [38.587s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.672s] Building query seed array... [2.03s] Computing hash join... [6.572s] Masking low complexity seeds... [0.23s] Searching alignments... [37.768s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.031s] Building query seed array... [2.376s] Computing hash join... [6.827s] Masking low complexity seeds... [0.213s] Searching alignments... [29.849s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.548s] Building query seed array... [2.486s] Computing hash join... [6.202s] Masking low complexity seeds... [0.238s] Searching alignments... [32.9s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.296s] Building query seed array... [2.09s] Computing hash join... [6.421s] Masking low complexity seeds... [0.207s] Searching alignments... [28.301s] Deallocating memory... [0s] Deallocating buffers... [1.76s] Clearing query masking... [1.596s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [6.253s] Sorting trace points... [1.237s] Computing alignments... [29.971s] Deallocating buffers... [0.015s] Loading trace points... [0.066s] Sorting trace points... [1.218s] Computing alignments... [30.132s] Deallocating buffers... [0.123s] Loading trace points... [0.057s] Sorting trace points... [0.831s] Computing alignments... [29.808s] Deallocating buffers... [0.014s] Loading trace points... [0.053s] Sorting trace points... [1.11s] Computing alignments... [30.484s] Deallocating buffers... [0.015s] Loading trace points... [0.066s] Sorting trace points... [0.932s] Computing alignments... [30.398s] Deallocating buffers... [0.015s] Loading trace points... [0.055s] Sorting trace points... [1.17s] Computing alignments... [30.556s] Deallocating buffers... [0.013s] Loading trace points... [0.512s] Sorting trace points... [1.219s] Computing alignments... [30.403s] Deallocating buffers... [0.016s] Loading trace points... [0.085s] Sorting trace points... [0.845s] Computing alignments... [30.049s] Deallocating buffers... [0.013s] Loading trace points... [0.002s] Sorting trace points... [0.872s] Computing alignments... [30.557s] Deallocating buffers... [0.014s] Loading trace points... [0.062s] Sorting trace points... [1.096s] Computing alignments... [30.952s] Deallocating buffers... [0.014s] Loading trace points... [0.047s] Sorting trace points... [1.163s] Computing alignments... [30.94s] Deallocating buffers... [0.013s] Loading trace points... [0.057s] Sorting trace points... [1.11s] Computing alignments... [31.343s] Deallocating buffers... [0.014s] Loading trace points... [0.073s] Sorting trace points... [1.162s] Computing alignments... [31.362s] Deallocating buffers... [0.013s] Loading trace points... [0.06s] Sorting trace points... [1.2s] Computing alignments... [31.514s] Deallocating buffers... [0.019s] Loading trace points... [0.071s] Sorting trace points... [0.885s] Computing alignments... [31.286s] Deallocating buffers... [0.014s] Loading trace points... [0s] Sorting trace points... [1.225s] Computing alignments... [31.065s] Deallocating buffers... [0.013s] Loading trace points... [0s] [516.238s] Deallocating reference... [0.061s] Loading reference sequences... [29.191s] Masking reference... [30.915s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.007s] Building reference histograms... [33.017s] Allocating buffers... [0s] Processing query block 1, reference block 6/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.396s] Building query seed array... [2.094s] Computing hash join... [6.958s] Masking low complexity seeds... [0.225s] Searching alignments... [70.945s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.974s] Building query seed array... [3.152s] Computing hash join... [6.395s] Masking low complexity seeds... [0.25s] Searching alignments... [47.024s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.442s] Building query seed array... [2.768s] Computing hash join... [6.54s] Masking low complexity seeds... [0.275s] Searching alignments... [42.209s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.375s] Building query seed array... [2.283s] Computing hash join... [6.489s] Masking low complexity seeds... [0.228s] Searching alignments... [36.138s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.602s] Building query seed array... [2.054s] Computing hash join... [6.808s] Masking low complexity seeds... [0.201s] Searching alignments... [37.675s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.543s] Building query seed array... [2.463s] Computing hash join... [6.729s] Masking low complexity seeds... [0.202s] Searching alignments... [30.444s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.647s] Building query seed array... [2.528s] Computing hash join... [6.871s] Masking low complexity seeds... [0.256s] Searching alignments... [31.812s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.501s] Building query seed array... [2.1s] Computing hash join... [6.551s] Masking low complexity seeds... [0.204s] Searching alignments... [28.467s] Deallocating memory... [0s] Deallocating buffers... [1.774s] Clearing query masking... [1.582s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [7.26s] Sorting trace points... [1.215s] Computing alignments... [29.791s] Deallocating buffers... [0.015s] Loading trace points... [0.132s] Sorting trace points... [0.939s] Computing alignments... [29.94s] Deallocating buffers... [0.013s] Loading trace points... [0.049s] Sorting trace points... [0.941s] Computing alignments... [29.708s] Deallocating buffers... [0.015s] Loading trace points... [0.059s] Sorting trace points... [1.109s] Computing alignments... [30.222s] Deallocating buffers... [0.013s] Loading trace points... [0.07s] Sorting trace points... [1.141s] Computing alignments... [30.242s] Deallocating buffers... [0.013s] Loading trace points... [0.092s] Sorting trace points... [1.149s] Computing alignments... [30.302s] Deallocating buffers... [0.013s] Loading trace points... [0.075s] Sorting trace points... [1.144s] Computing alignments... [30.067s] Deallocating buffers... [0.013s] Loading trace points... [0.067s] Sorting trace points... [1.152s] Computing alignments... [29.777s] Deallocating buffers... [0.013s] Loading trace points... [0.071s] Sorting trace points... [1.09s] Computing alignments... [30.462s] Deallocating buffers... [0.016s] Loading trace points... [0.001s] Sorting trace points... [1.144s] Computing alignments... [30.943s] Deallocating buffers... [0.013s] Loading trace points... [0.074s] Sorting trace points... [1.184s] Computing alignments... [30.96s] Deallocating buffers... [0.016s] Loading trace points... [0.043s] Sorting trace points... [1.176s] Computing alignments... [31.262s] Deallocating buffers... [0.013s] Loading trace points... [0.089s] Sorting trace points... [1.197s] Computing alignments... [31.27s] Deallocating buffers... [0.013s] Loading trace points... [0.062s] Sorting trace points... [0.831s] Computing alignments... [31.414s] Deallocating buffers... [0.015s] Loading trace points... [0.065s] Sorting trace points... [1.142s] Computing alignments... [31.346s] Deallocating buffers... [0.014s] Loading trace points... [0s] Sorting trace points... [1.174s] Computing alignments... [30.967s] Deallocating buffers... [0.016s] Loading trace points... [0s] [515.036s] Deallocating reference... [0.059s] Loading reference sequences... [30.219s] Masking reference... [30.883s] Initializing dictionary... [0.077s] Initializing temporary storage... [0.007s] Building reference histograms... [32.929s] Allocating buffers... [0s] Processing query block 1, reference block 7/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.255s] Building query seed array... [2.144s] Computing hash join... [6.548s] Masking low complexity seeds... [0.215s] Searching alignments... [73.519s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.746s] Building query seed array... [3.02s] Computing hash join... [6.372s] Masking low complexity seeds... [0.245s] Searching alignments... [48.279s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.745s] Building query seed array... [2.838s] Computing hash join... [6.939s] Masking low complexity seeds... [0.257s] Searching alignments... [42.991s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.065s] Building query seed array... [2.264s] Computing hash join... [6.599s] Masking low complexity seeds... [0.237s] Searching alignments... [37.185s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.655s] Building query seed array... [2.086s] Computing hash join... [6.174s] Masking low complexity seeds... [0.202s] Searching alignments... [37.899s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.515s] Building query seed array... [2.528s] Computing hash join... [6.345s] Masking low complexity seeds... [0.228s] Searching alignments... [30.19s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.858s] Building query seed array... [2.457s] Computing hash join... [6.822s] Masking low complexity seeds... [0.2s] Searching alignments... [32.739s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.435s] Building query seed array... [2.14s] Computing hash join... [6.55s] Masking low complexity seeds... [0.28s] Searching alignments... [28.91s] Deallocating memory... [0s] Deallocating buffers... [1.892s] Clearing query masking... [1.587s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [6.221s] Sorting trace points... [1.238s] Computing alignments... [30.191s] Deallocating buffers... [0.015s] Loading trace points... [0.088s] Sorting trace points... [1.272s] Computing alignments... [30.603s] Deallocating buffers... [0.229s] Loading trace points... [0.062s] Sorting trace points... [0.905s] Computing alignments... [30.093s] Deallocating buffers... [0.014s] Loading trace points... [0.055s] Sorting trace points... [1.046s] Computing alignments... [30.716s] Deallocating buffers... [0.013s] Loading trace points... [0.069s] Sorting trace points... [1.164s] Computing alignments... [30.728s] Deallocating buffers... [0.013s] Loading trace points... [0.056s] Sorting trace points... [0.857s] Computing alignments... [30.879s] Deallocating buffers... [0.014s] Loading trace points... [0.081s] Sorting trace points... [1.118s] Computing alignments... [30.532s] Deallocating buffers... [0.013s] Loading trace points... [0.076s] Sorting trace points... [1.217s] Computing alignments... [30.333s] Deallocating buffers... [0.016s] Loading trace points... [0.04s] Sorting trace points... [0.916s] Computing alignments... [30.658s] Deallocating buffers... [0.015s] Loading trace points... [0.065s] Sorting trace points... [1.188s] Computing alignments... [31.107s] Deallocating buffers... [0.016s] Loading trace points... [0.077s] Sorting trace points... [0.913s] Computing alignments... [31.222s] Deallocating buffers... [0.015s] Loading trace points... [0.058s] Sorting trace points... [1.197s] Computing alignments... [31.519s] Deallocating buffers... [0.013s] Loading trace points... [0.077s] Sorting trace points... [0.927s] Computing alignments... [31.595s] Deallocating buffers... [0.014s] Loading trace points... [0.079s] Sorting trace points... [0.857s] Computing alignments... [31.683s] Deallocating buffers... [0.014s] Loading trace points... [0.071s] Sorting trace points... [0.862s] Computing alignments... [31.517s] Deallocating buffers... [0.014s] Loading trace points... [0s] Sorting trace points... [0.87s] Computing alignments... [31.309s] Deallocating buffers... [0.015s] Loading trace points... [0s] [519.117s] Deallocating reference... [0.06s] Loading reference sequences... [31.938s] Masking reference... [32.114s] Initializing dictionary... [0.079s] Initializing temporary storage... [0.008s] Building reference histograms... [32.888s] Allocating buffers... [0s] Processing query block 1, reference block 8/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.875s] Building query seed array... [2.103s] Computing hash join... [7.162s] Masking low complexity seeds... [0.215s] Searching alignments... [73.743s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 1/2, index chunk 2/4. Building reference seed array... [13.063s] Building query seed array... [2.953s] Computing hash join... [7.106s] Masking low complexity seeds... [0.216s] Searching alignments... [48.193s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.804s] Building query seed array... [2.682s] Computing hash join... [6.489s] Masking low complexity seeds... [0.229s] Searching alignments... [41.248s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.35s] Building query seed array... [2.256s] Computing hash join... [6.754s] Masking low complexity seeds... [0.253s] Searching alignments... [36.873s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.387s] Building query seed array... [2.135s] Computing hash join... [6.391s] Masking low complexity seeds... [0.247s] Searching alignments... [37.817s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.631s] Building query seed array... [2.387s] Computing hash join... [6.527s] Masking low complexity seeds... [0.228s] Searching alignments... [30.035s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.932s] Building query seed array... [2.466s] Computing hash join... [6.216s] Masking low complexity seeds... [0.226s] Searching alignments... [33.631s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.957s] Building query seed array... [2.179s] Computing hash join... [6.416s] Masking low complexity seeds... [0.206s] Searching alignments... [28.184s] Deallocating memory... [0s] Deallocating buffers... [1.85s] Clearing query masking... [1.603s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [6.19s] Sorting trace points... [1.193s] Computing alignments... [30.022s] Deallocating buffers... [0.016s] Loading trace points... [0.258s] Sorting trace points... [1.194s] Computing alignments... [30.125s] Deallocating buffers... [0.016s] Loading trace points... [0.079s] Sorting trace points... [1.112s] Computing alignments... [29.951s] Deallocating buffers... [0.016s] Loading trace points... [0.08s] Sorting trace points... [1.129s] Computing alignments... [30.485s] Deallocating buffers... [0.016s] Loading trace points... [0.066s] Sorting trace points... [1.099s] Computing alignments... [30.473s] Deallocating buffers... [0.013s] Loading trace points... [0.058s] Sorting trace points... [1.152s] Computing alignments... [30.629s] Deallocating buffers... [0.016s] Loading trace points... [0.08s] Sorting trace points... [1.143s] Computing alignments... [30.357s] Deallocating buffers... [0.013s] Loading trace points... [0.07s] Sorting trace points... [1.121s] Computing alignments... [30.179s] Deallocating buffers... [0.015s] Loading trace points... [0.065s] Sorting trace points... [1.15s] Computing alignments... [30.763s] Deallocating buffers... [0.013s] Loading trace points... [0.085s] Sorting trace points... [0.867s] Computing alignments... [31.179s] Deallocating buffers... [0.015s] Loading trace points... [0.056s] Sorting trace points... [1.188s] Computing alignments... [31.077s] Deallocating buffers... [0.016s] Loading trace points... [0.064s] Sorting trace points... [0.899s] Computing alignments... [31.423s] Deallocating buffers... [0.014s] Loading trace points... [0.082s] Sorting trace points... [1.171s] Computing alignments... [31.53s] Deallocating buffers... [0.013s] Loading trace points... [0.068s] Sorting trace points... [1.19s] Computing alignments... [31.668s] Deallocating buffers... [0.017s] Loading trace points... [0.096s] Sorting trace points... [0.846s] Computing alignments... [31.45s] Deallocating buffers... [0.015s] Loading trace points... [0s] Sorting trace points... [1.17s] Computing alignments... [31.208s] Deallocating buffers... [0.016s] Loading trace points... [0s] [518.05s] Deallocating reference... [0.056s] Loading reference sequences... [30.688s] Masking reference... [30.851s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.008s] Building reference histograms... [32.374s] Allocating buffers... [0s] Processing query block 1, reference block 9/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.563s] Building query seed array... [2.062s] Computing hash join... [6.673s] Masking low complexity seeds... [0.221s] Searching alignments... [72.704s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 1/2, index chunk 2/4. Building reference seed array... [13.351s] Building query seed array... [2.921s] Computing hash join... [7.044s] Masking low complexity seeds... [0.229s] Searching alignments... [48.204s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 1/2, index chunk 3/4. Building reference seed array... [14.447s] Building query seed array... [2.734s] Computing hash join... [6.488s] Masking low complexity seeds... [0.245s] Searching alignments... [42.756s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.572s] Building query seed array... [2.299s] Computing hash join... [7.015s] Masking low complexity seeds... [0.236s] Searching alignments... [38.321s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.666s] Building query seed array... [2.044s] Computing hash join... [6.81s] Masking low complexity seeds... [0.219s] Searching alignments... [37.116s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.625s] Building query seed array... [2.355s] Computing hash join... [6.831s] Masking low complexity seeds... [0.217s] Searching alignments... [31.026s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.837s] Building query seed array... [2.468s] Computing hash join... [6.562s] Masking low complexity seeds... [0.258s] Searching alignments... [32.671s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.305s] Building query seed array... [1.993s] Computing hash join... [6.392s] Masking low complexity seeds... [0.24s] Searching alignments... [28.572s] Deallocating memory... [0s] Deallocating buffers... [2.086s] Clearing query masking... [1.626s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [6.11s] Sorting trace points... [1.221s] Computing alignments... [30.139s] Deallocating buffers... [0.015s] Loading trace points... [0.066s] Sorting trace points... [1.152s] Computing alignments... [30.242s] Deallocating buffers... [0.013s] Loading trace points... [0.056s] Sorting trace points... [0.809s] Computing alignments... [30.053s] Deallocating buffers... [0.015s] Loading trace points... [0.071s] Sorting trace points... [1.112s] Computing alignments... [30.539s] Deallocating buffers... [0.013s] Loading trace points... [0.071s] Sorting trace points... [1.117s] Computing alignments... [30.621s] Deallocating buffers... [0.013s] Loading trace points... [0.045s] Sorting trace points... [1.138s] Computing alignments... [30.712s] Deallocating buffers... [0.016s] Loading trace points... [0.065s] Sorting trace points... [1.129s] Computing alignments... [30.563s] Deallocating buffers... [0.013s] Loading trace points... [0.053s] Sorting trace points... [1.082s] Computing alignments... [30.243s] Deallocating buffers... [0.016s] Loading trace points... [0.002s] Sorting trace points... [1.173s] Computing alignments... [30.813s] Deallocating buffers... [0.013s] Loading trace points... [0.078s] Sorting trace points... [1.167s] Computing alignments... [31.138s] Deallocating buffers... [0.017s] Loading trace points... [0.055s] Sorting trace points... [1.194s] Computing alignments... [31.239s] Deallocating buffers... [0.016s] Loading trace points... [0.059s] Sorting trace points... [0.883s] Computing alignments... [31.447s] Deallocating buffers... [0.015s] Loading trace points... [0.087s] Sorting trace points... [0.961s] Computing alignments... [31.494s] Deallocating buffers... [0.015s] Loading trace points... [0.085s] Sorting trace points... [0.859s] Computing alignments... [31.614s] Deallocating buffers... [0.015s] Loading trace points... [0.071s] Sorting trace points... [1.022s] Computing alignments... [31.434s] Deallocating buffers... [0.014s] Loading trace points... [0s] Sorting trace points... [1.019s] Computing alignments... [31.286s] Deallocating buffers... [0.014s] Loading trace points... [0s] [518.112s] Deallocating reference... [0.057s] Loading reference sequences... [29.199s] Masking reference... [31.967s] Initializing dictionary... [0.077s] Initializing temporary storage... [0.006s] Building reference histograms... [32.449s] Allocating buffers... [0s] Processing query block 1, reference block 10/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.319s] Building query seed array... [2.035s] Computing hash join... [6.468s] Masking low complexity seeds... [0.211s] Searching alignments... [75.419s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.857s] Building query seed array... [2.86s] Computing hash join... [6.569s] Masking low complexity seeds... [0.23s] Searching alignments... [46.005s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 1/2, index chunk 3/4. Building reference seed array... [14.024s] Building query seed array... [2.784s] Computing hash join... [6.152s] Masking low complexity seeds... [0.24s] Searching alignments... [40.281s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.969s] Building query seed array... [2.301s] Computing hash join... [6.053s] Masking low complexity seeds... [0.276s] Searching alignments... [36.374s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.711s] Building query seed array... [2.037s] Computing hash join... [5.947s] Masking low complexity seeds... [0.248s] Searching alignments... [37.658s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.915s] Building query seed array... [2.361s] Computing hash join... [5.9s] Masking low complexity seeds... [0.205s] Searching alignments... [30.432s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.416s] Building query seed array... [2.531s] Computing hash join... [5.862s] Masking low complexity seeds... [0.213s] Searching alignments... [32.939s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.855s] Building query seed array... [2.061s] Computing hash join... [6.451s] Masking low complexity seeds... [0.281s] Searching alignments... [29.524s] Deallocating memory... [0s] Deallocating buffers... [2.377s] Clearing query masking... [1.54s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [6.099s] Sorting trace points... [1.206s] Computing alignments... [29.982s] Deallocating buffers... [0.013s] Loading trace points... [0.068s] Sorting trace points... [0.889s] Computing alignments... [30.19s] Deallocating buffers... [0.014s] Loading trace points... [0.065s] Sorting trace points... [1.133s] Computing alignments... [29.878s] Deallocating buffers... [0.012s] Loading trace points... [0.063s] Sorting trace points... [1.148s] Computing alignments... [30.397s] Deallocating buffers... [0.012s] Loading trace points... [0.079s] Sorting trace points... [1.142s] Computing alignments... [30.381s] Deallocating buffers... [0.013s] Loading trace points... [0.06s] Sorting trace points... [1.257s] Computing alignments... [30.56s] Deallocating buffers... [0.086s] Loading trace points... [0.093s] Sorting trace points... [1.149s] Computing alignments... [30.346s] Deallocating buffers... [0.013s] Loading trace points... [0.055s] Sorting trace points... [0.903s] Computing alignments... [30.107s] Deallocating buffers... [0.014s] Loading trace points... [0.001s] Sorting trace points... [1.142s] Computing alignments... [30.672s] Deallocating buffers... [0.013s] Loading trace points... [0.073s] Sorting trace points... [0.885s] Computing alignments... [31.007s] Deallocating buffers... [0.015s] Loading trace points... [0.054s] Sorting trace points... [1.143s] Computing alignments... [31.019s] Deallocating buffers... [0.016s] Loading trace points... [0.056s] Sorting trace points... [0.86s] Computing alignments... [31.301s] Deallocating buffers... [0.014s] Loading trace points... [0.061s] Sorting trace points... [1.101s] Computing alignments... [31.409s] Deallocating buffers... [0.014s] Loading trace points... [0.051s] Sorting trace points... [1.222s] Computing alignments... [31.61s] Deallocating buffers... [0.073s] Loading trace points... [0.07s] Sorting trace points... [0.94s] Computing alignments... [31.44s] Deallocating buffers... [0.015s] Loading trace points... [0s] Sorting trace points... [1.193s] Computing alignments... [31.156s] Deallocating buffers... [0.013s] Loading trace points... [0s] [516.233s] Deallocating reference... [0.059s] Loading reference sequences... [29.915s] Masking reference... [30.88s] Initializing dictionary... [0.077s] Initializing temporary storage... [0.007s] Building reference histograms... [32.402s] Allocating buffers... [0s] Processing query block 1, reference block 11/14, shape 1/2, index chunk 1/4. Building reference seed array... [9.962s] Building query seed array... [2.097s] Computing hash join... [7.26s] Masking low complexity seeds... [0.224s] Searching alignments... [70.403s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.215s] Building query seed array... [3.015s] Computing hash join... [6.62s] Masking low complexity seeds... [0.23s] Searching alignments... [47.537s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.478s] Building query seed array... [2.589s] Computing hash join... [6.338s] Masking low complexity seeds... [0.253s] Searching alignments... [42.408s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.986s] Building query seed array... [2.393s] Computing hash join... [6.72s] Masking low complexity seeds... [0.224s] Searching alignments... [37.459s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.509s] Building query seed array... [2.074s] Computing hash join... [6.532s] Masking low complexity seeds... [0.22s] Searching alignments... [37.537s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.856s] Building query seed array... [2.472s] Computing hash join... [6.882s] Masking low complexity seeds... [0.215s] Searching alignments... [30.655s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 2/2, index chunk 3/4. Building reference seed array... [14.069s] Building query seed array... [2.525s] Computing hash join... [6.411s] Masking low complexity seeds... [0.24s] Searching alignments... [32.581s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.956s] Building query seed array... [2.12s] Computing hash join... [6.384s] Masking low complexity seeds... [0.211s] Searching alignments... [28.094s] Deallocating memory... [0s] Deallocating buffers... [2.187s] Clearing query masking... [1.59s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [6.149s] Sorting trace points... [1.246s] Computing alignments... [30.127s] Deallocating buffers... [0.015s] Loading trace points... [0.082s] Sorting trace points... [1.196s] Computing alignments... [30.258s] Deallocating buffers... [0.137s] Loading trace points... [0.055s] Sorting trace points... [1.136s] Computing alignments... [29.895s] Deallocating buffers... [0.013s] Loading trace points... [0.071s] Sorting trace points... [1.097s] Computing alignments... [30.457s] Deallocating buffers... [0.013s] Loading trace points... [0.073s] Sorting trace points... [0.99s] Computing alignments... [30.437s] Deallocating buffers... [0.015s] Loading trace points... [0.055s] Sorting trace points... [1.167s] Computing alignments... [30.655s] Deallocating buffers... [0.013s] Loading trace points... [0.095s] Sorting trace points... [0.832s] Computing alignments... [30.406s] Deallocating buffers... [0.014s] Loading trace points... [0.072s] Sorting trace points... [1.1s] Computing alignments... [30.009s] Deallocating buffers... [0.016s] Loading trace points... [0.108s] Sorting trace points... [1.159s] Computing alignments... [30.722s] Deallocating buffers... [0.013s] Loading trace points... [0.059s] Sorting trace points... [1.174s] Computing alignments... [30.998s] Deallocating buffers... [0.013s] Loading trace points... [0.061s] Sorting trace points... [1.153s] Computing alignments... [30.966s] Deallocating buffers... [0.017s] Loading trace points... [0.052s] Sorting trace points... [1.023s] Computing alignments... [31.391s] Deallocating buffers... [0.026s] Loading trace points... [0.081s] Sorting trace points... [1.183s] Computing alignments... [31.398s] Deallocating buffers... [0.016s] Loading trace points... [0.138s] Sorting trace points... [1.177s] Computing alignments... [31.51s] Deallocating buffers... [0.139s] Loading trace points... [0.093s] Sorting trace points... [1.207s] Computing alignments... [31.358s] Deallocating buffers... [0.013s] Loading trace points... [0s] Sorting trace points... [1.021s] Computing alignments... [31.104s] Deallocating buffers... [0.016s] Loading trace points... [0s] [517.481s] Deallocating reference... [0.059s] Loading reference sequences... [32.389s] Masking reference... [31.236s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.006s] Building reference histograms... [32.73s] Allocating buffers... [0s] Processing query block 1, reference block 12/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.201s] Building query seed array... [2.126s] Computing hash join... [7.283s] Masking low complexity seeds... [0.227s] Searching alignments... [74.117s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 1/2, index chunk 2/4. Building reference seed array... [13.075s] Building query seed array... [2.955s] Computing hash join... [7.063s] Masking low complexity seeds... [0.217s] Searching alignments... [46.158s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 1/2, index chunk 3/4. Building reference seed array... [14.075s] Building query seed array... [2.664s] Computing hash join... [6.463s] Masking low complexity seeds... [0.243s] Searching alignments... [41.293s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.54s] Building query seed array... [2.274s] Computing hash join... [6.747s] Masking low complexity seeds... [0.265s] Searching alignments... [36.574s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.48s] Building query seed array... [2.11s] Computing hash join... [6.514s] Masking low complexity seeds... [0.238s] Searching alignments... [37.682s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 2/2, index chunk 2/4. Building reference seed array... [13.036s] Building query seed array... [2.423s] Computing hash join... [6.507s] Masking low complexity seeds... [0.226s] Searching alignments... [30.335s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.888s] Building query seed array... [2.561s] Computing hash join... [6.442s] Masking low complexity seeds... [0.237s] Searching alignments... [32.864s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.911s] Building query seed array... [2.049s] Computing hash join... [6.668s] Masking low complexity seeds... [0.206s] Searching alignments... [27.892s] Deallocating memory... [0s] Deallocating buffers... [2.161s] Clearing query masking... [1.581s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [5.842s] Sorting trace points... [1.224s] Computing alignments... [30.016s] Deallocating buffers... [0.014s] Loading trace points... [0.052s] Sorting trace points... [1.244s] Computing alignments... [30.321s] Deallocating buffers... [0.103s] Loading trace points... [0.056s] Sorting trace points... [1.047s] Computing alignments... [29.953s] Deallocating buffers... [0.015s] Loading trace points... [0.047s] Sorting trace points... [1.148s] Computing alignments... [30.514s] Deallocating buffers... [0.013s] Loading trace points... [0.06s] Sorting trace points... [0.841s] Computing alignments... [30.44s] Deallocating buffers... [0.015s] Loading trace points... [0.068s] Sorting trace points... [1.169s] Computing alignments... [30.665s] Deallocating buffers... [0.013s] Loading trace points... [0.098s] Sorting trace points... [1.154s] Computing alignments... [30.604s] Deallocating buffers... [0.013s] Loading trace points... [0.061s] Sorting trace points... [0.83s] Computing alignments... [30.246s] Deallocating buffers... [0.015s] Loading trace points... [0.039s] Sorting trace points... [1.162s] Computing alignments... [30.801s] Deallocating buffers... [0.013s] Loading trace points... [0.061s] Sorting trace points... [1.162s] Computing alignments... [31.107s] Deallocating buffers... [0.013s] Loading trace points... [0.794s] Sorting trace points... [1.011s] Computing alignments... [31.163s] Deallocating buffers... [0.015s] Loading trace points... [0.055s] Sorting trace points... [1.059s] Computing alignments... [31.305s] Deallocating buffers... [0.016s] Loading trace points... [0.076s] Sorting trace points... [1.171s] Computing alignments... [31.395s] Deallocating buffers... [0.013s] Loading trace points... [0.079s] Sorting trace points... [1.206s] Computing alignments... [31.456s] Deallocating buffers... [0.013s] Loading trace points... [0.071s] Sorting trace points... [1.192s] Computing alignments... [31.389s] Deallocating buffers... [0.013s] Loading trace points... [0s] Sorting trace points... [0.925s] Computing alignments... [31.132s] Deallocating buffers... [0.014s] Loading trace points... [0s] [518.079s] Deallocating reference... [0.057s] Loading reference sequences... [32.51s] Masking reference... [32.062s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.007s] Building reference histograms... [32.154s] Allocating buffers... [0s] Processing query block 1, reference block 13/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.402s] Building query seed array... [2.096s] Computing hash join... [7.304s] Masking low complexity seeds... [0.217s] Searching alignments... [74.084s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 1/2, index chunk 2/4. Building reference seed array... [13.015s] Building query seed array... [3.043s] Computing hash join... [7.177s] Masking low complexity seeds... [0.221s] Searching alignments... [48.341s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.832s] Building query seed array... [2.643s] Computing hash join... [6.499s] Masking low complexity seeds... [0.236s] Searching alignments... [41.496s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.273s] Building query seed array... [2.283s] Computing hash join... [6.687s] Masking low complexity seeds... [0.282s] Searching alignments... [37.424s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.808s] Building query seed array... [2.007s] Computing hash join... [6.336s] Masking low complexity seeds... [0.245s] Searching alignments... [38.214s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.634s] Building query seed array... [2.316s] Computing hash join... [6.462s] Masking low complexity seeds... [0.233s] Searching alignments... [31.13s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.479s] Building query seed array... [2.499s] Computing hash join... [6.4s] Masking low complexity seeds... [0.233s] Searching alignments... [33.786s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.683s] Building query seed array... [2.069s] Computing hash join... [6.655s] Masking low complexity seeds... [0.202s] Searching alignments... [30.033s] Deallocating memory... [0s] Deallocating buffers... [2.094s] Clearing query masking... [1.592s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [6.583s] Sorting trace points... [1.104s] Computing alignments... [29.886s] Deallocating buffers... [0.015s] Loading trace points... [0.079s] Sorting trace points... [1.123s] Computing alignments... [30.042s] Deallocating buffers... [0.016s] Loading trace points... [0.056s] Sorting trace points... [1.148s] Computing alignments... [29.835s] Deallocating buffers... [0.016s] Loading trace points... [0.485s] Sorting trace points... [1.266s] Computing alignments... [30.384s] Deallocating buffers... [0.013s] Loading trace points... [0.133s] Sorting trace points... [1.149s] Computing alignments... [30.375s] Deallocating buffers... [0.013s] Loading trace points... [0.061s] Sorting trace points... [1.01s] Computing alignments... [30.652s] Deallocating buffers... [0.018s] Loading trace points... [0.059s] Sorting trace points... [1.142s] Computing alignments... [30.304s] Deallocating buffers... [0.013s] Loading trace points... [0.051s] Sorting trace points... [1.101s] Computing alignments... [30.152s] Deallocating buffers... [0.016s] Loading trace points... [0.065s] Sorting trace points... [1.131s] Computing alignments... [30.637s] Deallocating buffers... [0.016s] Loading trace points... [0.041s] Sorting trace points... [1.175s] Computing alignments... [30.974s] Deallocating buffers... [0.013s] Loading trace points... [0.056s] Sorting trace points... [0.891s] Computing alignments... [31.024s] Deallocating buffers... [0.015s] Loading trace points... [0.069s] Sorting trace points... [1.049s] Computing alignments... [31.332s] Deallocating buffers... [0.016s] Loading trace points... [0.087s] Sorting trace points... [1.173s] Computing alignments... [31.558s] Deallocating buffers... [0.013s] Loading trace points... [0.084s] Sorting trace points... [1.206s] Computing alignments... [31.529s] Deallocating buffers... [0.02s] Loading trace points... [0.091s] Sorting trace points... [1.159s] Computing alignments... [31.379s] Deallocating buffers... [0.013s] Loading trace points... [0s] Sorting trace points... [1.172s] Computing alignments... [31.136s] Deallocating buffers... [0.017s] Loading trace points... [0s] [517.607s] Deallocating reference... [0.069s] Loading reference sequences... [23.594s] Masking reference... [25.005s] Initializing dictionary... [0.062s] Initializing temporary storage... [0.006s] Building reference histograms... [26.359s] Allocating buffers... [0s] Processing query block 1, reference block 14/14, shape 1/2, index chunk 1/4. Building reference seed array... [8.209s] Building query seed array... [2.084s] Computing hash join... [4.855s] Masking low complexity seeds... [0.214s] Searching alignments... [59.884s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 1/2, index chunk 2/4. Building reference seed array... [10.496s] Building query seed array... [3.052s] Computing hash join... [4.99s] Masking low complexity seeds... [0.208s] Searching alignments... [39.579s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 1/2, index chunk 3/4. Building reference seed array... [11.074s] Building query seed array... [2.835s] Computing hash join... [4.426s] Masking low complexity seeds... [0.228s] Searching alignments... [34.621s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 1/2, index chunk 4/4. Building reference seed array... [8.874s] Building query seed array... [2.376s] Computing hash join... [4.475s] Masking low complexity seeds... [0.222s] Searching alignments... [30.998s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 2/2, index chunk 1/4. Building reference seed array... [8.763s] Building query seed array... [2.058s] Computing hash join... [4.773s] Masking low complexity seeds... [0.193s] Searching alignments... [30.711s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 2/2, index chunk 2/4. Building reference seed array... [10.388s] Building query seed array... [2.411s] Computing hash join... [4.46s] Masking low complexity seeds... [0.256s] Searching alignments... [24.731s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 2/2, index chunk 3/4. Building reference seed array... [11.302s] Building query seed array... [2.51s] Computing hash join... [4.246s] Masking low complexity seeds... [0.185s] Searching alignments... [26.953s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 2/2, index chunk 4/4. Building reference seed array... [8.654s] Building query seed array... [2.108s] Computing hash join... [4.186s] Masking low complexity seeds... [0.197s] Searching alignments... [23.343s] Deallocating memory... [0s] Deallocating buffers... [1.575s] Clearing query masking... [1.542s] Opening temporary output file... [0.011s] Computing alignments... Loading trace points... [8.982s] Sorting trace points... [1.926s] Computing alignments... [47.957s] Deallocating buffers... [0.021s] Loading trace points... [0.587s] Sorting trace points... [2.267s] Computing alignments... [48.225s] Deallocating buffers... [0.284s] Loading trace points... [0.161s] Sorting trace points... [1.633s] Computing alignments... [48.574s] Deallocating buffers... [0.023s] Loading trace points... [0.128s] Sorting trace points... [1.894s] Computing alignments... [48.174s] Deallocating buffers... [0.025s] Loading trace points... [0.148s] Sorting trace points... [1.582s] Computing alignments... [49.202s] Deallocating buffers... [0.023s] Loading trace points... [0.139s] Sorting trace points... [1.97s] Computing alignments... [49.668s] Deallocating buffers... [0.026s] Loading trace points... [0.117s] Sorting trace points... [1.574s] Computing alignments... [50.186s] Deallocating buffers... [0.042s] Loading trace points... [0s] Sorting trace points... [1.526s] Computing alignments... [49.571s] Deallocating buffers... [0.025s] Loading trace points... [0s] [416.833s] Deallocating reference... [0.052s] Loading reference sequences... [0.092s] Deallocating buffers... [0s] Joining output blocks... Joining output blocks... [2159.65s] [2159.65s] Deallocating queries... [0.089s] Loading query sequences... [0s] Closing the input file... [0s] Closing the output file... Loading dictionary... [3.762s] [4.808s] Closing the database... [0s] Cleaning up... [0s] Total time = 17654.6s Reported 2427296528 pairwise alignments, 2427296528 HSPs. 13300591 queries aligned. DIAMOND BLASTx on /gscratch/srlab/sam/data/P_verrucosa/RNAseq/E7_R1.fastp-trim.20230215.fq.gz complete: E7_R1.blastx.meganized.daa Now MEGANizing E7_R1.blastx.meganized.daa Version MEGAN Community Edition (version 6.22.0, built 19 Feb 2022) Author(s) Daniel H. Huson Copyright (C) 2022 Daniel H. Huson. This program comes with ABSOLUTELY NO WARRANTY. Java version: 17.0.2 Functional classifications to use: EC, EGGNOG, GTDB, INTERPRO2GO, SEED Loading ncbi.map: 2,396,736 Loading ncbi.tre: 2,396,740 Loading ec.map: 8,200 Loading ec.tre: 8,204 Loading eggnog.map: 30,875 Loading eggnog.tre: 30,986 Loading gtdb.map: 240,103 Loading gtdb.tre: 240,107 Loading interpro2go.map: 14,242 Loading interpro2go.tre: 28,907 Loading seed.map: 961 Loading seed.tre: 962 Meganizing: E7_R1.blastx.meganized.daa Meganizing init Annotating DAA file using FAST mode (accession database and first accession per line) Annotating references 10% 20% 30% 40% 50% 60% 70% 100% (527.8s) Writing 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (1.3s) Binning reads Initializing... Initializing binning... Using 'Naive LCA' algorithm for binning: Taxonomy Using Best-Hit algorithm for binning: SEED Using Best-Hit algorithm for binning: EGGNOG Using 'Naive LCA' algorithm for binning: GTDB Using Best-Hit algorithm for binning: EC Using Best-Hit algorithm for binning: INTERPRO2GO Binning reads... Binning reads Analyzing alignments 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (5,603.9s) Total reads: 13,300,591 With hits: 13,300,591 Alignments: 2,419,324,078 Assig. Taxonomy: 12,388,695 Assig. SEED: 98,260 Assig. EGGNOG: 44,640 Assig. GTDB: 374,448 Assig. EC: 2,117,262 Assig. INTERPRO2GO: 1,131,463 MinSupport set to: 6650 Binning reads Applying min-support & disabled filter to Taxonomy... 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (0.4s) Min-supp. changes: 3,688 Binning reads Applying min-support & disabled filter to GTDB... 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (9.1s) Min-supp. changes: 2,775 Binning reads Writing classification tables 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (34.1s) Binning reads Syncing 100% (0.5s) Class. Taxonomy: 69 Class. SEED: 476 Class. EGGNOG: 1,721 Class. GTDB: 17 Class. EC: 2,302 Class. INTERPRO2GO: 7,529 Total time: 6,185s Peak memory: 52.7 of 195.3G MEGANization of E7_R1.blastx.meganized.daa completed. Generating MD5 checksum for /gscratch/srlab/sam/data/P_verrucosa/RNAseq/E7_R2.fastp-trim.20230215.fq.gz... 9c663fdd775c388c81ac8b9300d1a333 /gscratch/srlab/sam/data/P_verrucosa/RNAseq/E7_R2.fastp-trim.20230215.fq.gz Running DIAMOND BLASTx on /gscratch/srlab/sam/data/P_verrucosa/RNAseq/E7_R2.fastp-trim.20230215.fq.gz. diamond v2.1.1.155 (C) Max Planck Society for the Advancement of Science Documentation, support and updates available at http://www.diamondsearch.org Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021) #CPU threads: 40 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: Percentage range of top alignment score to report hits: 5 Opening the database... [0.361s] Database: /gscratch/srlab/blastdbs/20230215-ncbi-nr/20230215-ncbi-nr.dmnd (type: Diamond database, sequences: 526308523, letters: 207134680681) Block size = 15000000000 Opening the input file... [0.651s] Opening the output file... [0s] Loading query sequences... [74.346s] Masking queries... [18.802s] Algorithm: Double-indexed Building query histograms... [19.566s] Loading reference sequences... [29.271s] Masking reference... [32.102s] Initializing dictionary... [0.079s] Initializing temporary storage... [0.008s] Building reference histograms... [32.148s] Allocating buffers... [0s] Processing query block 1, reference block 1/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.498s] Building query seed array... [2.152s] Computing hash join... [6.671s] Masking low complexity seeds... [0.359s] Searching alignments... [71.421s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.372s] Building query seed array... [2.798s] Computing hash join... [6.455s] Masking low complexity seeds... [0.259s] Searching alignments... [46.524s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.516s] Building query seed array... [2.906s] Computing hash join... [6.254s] Masking low complexity seeds... [0.273s] Searching alignments... [43.284s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.285s] Building query seed array... [2.322s] Computing hash join... [6.502s] Masking low complexity seeds... [0.258s] Searching alignments... [39.365s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.059s] Building query seed array... [2.112s] Computing hash join... [6.503s] Masking low complexity seeds... [0.252s] Searching alignments... [39.987s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.337s] Building query seed array... [2.353s] Computing hash join... [6.823s] Masking low complexity seeds... [0.305s] Searching alignments... [32.046s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 2/2, index chunk 3/4. Building reference seed array... [14.213s] Building query seed array... [2.609s] Computing hash join... [6.967s] Masking low complexity seeds... [0.285s] Searching alignments... [34.589s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.066s] Building query seed array... [2.133s] Computing hash join... [6.418s] Masking low complexity seeds... [0.232s] Searching alignments... [30.481s] Deallocating memory... [0s] Deallocating buffers... [1.184s] Clearing query masking... [1.67s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [6.015s] Sorting trace points... [1.22s] Computing alignments... [30.109s] Deallocating buffers... [0.015s] Loading trace points... [0.065s] Sorting trace points... [1.085s] Computing alignments... [29.855s] Deallocating buffers... [0.015s] Loading trace points... [0.065s] Sorting trace points... [1.103s] Computing alignments... [29.904s] Deallocating buffers... [0.012s] Loading trace points... [0.071s] Sorting trace points... [1.132s] Computing alignments... [30.382s] Deallocating buffers... [0.016s] Loading trace points... [0.067s] Sorting trace points... [1.163s] Computing alignments... [30.517s] Deallocating buffers... [0.016s] Loading trace points... [0.061s] Sorting trace points... [1.139s] Computing alignments... [30.522s] Deallocating buffers... [0.013s] Loading trace points... [0.062s] Sorting trace points... [1.112s] Computing alignments... [29.841s] Deallocating buffers... [0.012s] Loading trace points... [0.082s] Sorting trace points... [1.122s] Computing alignments... [29.754s] Deallocating buffers... [0.012s] Loading trace points... [0.048s] Sorting trace points... [0.847s] Computing alignments... [30.747s] Deallocating buffers... [0.014s] Loading trace points... [0.003s] Sorting trace points... [1.2s] Computing alignments... [31.806s] Deallocating buffers... [0.016s] Loading trace points... [0.058s] Sorting trace points... [1.139s] Computing alignments... [31.662s] Deallocating buffers... [0.016s] Loading trace points... [0.05s] Sorting trace points... [1.216s] Computing alignments... [32.07s] Deallocating buffers... [0.014s] Loading trace points... [0.118s] Sorting trace points... [1.153s] Computing alignments... [31.905s] Deallocating buffers... [0.017s] Loading trace points... [0.089s] Sorting trace points... [1.108s] Computing alignments... [32.282s] Deallocating buffers... [0.014s] Loading trace points... [0.081s] Sorting trace points... [1.092s] Computing alignments... [32.061s] Deallocating buffers... [0.014s] Loading trace points... [0s] Sorting trace points... [1.233s] Computing alignments... [31.939s] Deallocating buffers... [0.014s] Loading trace points... [0s] [520.812s] Deallocating reference... [0.058s] Loading reference sequences... [29.243s] Masking reference... [30.98s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.008s] Building reference histograms... [32.958s] Allocating buffers... [0.001s] Processing query block 1, reference block 2/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.351s] Building query seed array... [2.075s] Computing hash join... [6.352s] Masking low complexity seeds... [0.46s] Searching alignments... [71.335s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.7s] Building query seed array... [2.793s] Computing hash join... [5.977s] Masking low complexity seeds... [0.288s] Searching alignments... [45.942s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.891s] Building query seed array... [2.794s] Computing hash join... [6.756s] Masking low complexity seeds... [0.251s] Searching alignments... [41.274s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.52s] Building query seed array... [2.303s] Computing hash join... [6.224s] Masking low complexity seeds... [0.251s] Searching alignments... [36.378s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.696s] Building query seed array... [2.161s] Computing hash join... [6.063s] Masking low complexity seeds... [0.244s] Searching alignments... [38.571s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 2/2, index chunk 2/4. Building reference seed array... [13.147s] Building query seed array... [2.456s] Computing hash join... [5.895s] Masking low complexity seeds... [0.258s] Searching alignments... [30.747s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 2/2, index chunk 3/4. Building reference seed array... [14.05s] Building query seed array... [2.482s] Computing hash join... [6.136s] Masking low complexity seeds... [0.244s] Searching alignments... [32.237s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.477s] Building query seed array... [2.138s] Computing hash join... [6.074s] Masking low complexity seeds... [0.251s] Searching alignments... [27.954s] Deallocating memory... [0s] Deallocating buffers... [1.699s] Clearing query masking... [1.588s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [5.846s] Sorting trace points... [1.147s] Computing alignments... [29.783s] Deallocating buffers... [0.014s] Loading trace points... [0.051s] Sorting trace points... [1.09s] Computing alignments... [29.49s] Deallocating buffers... [0.013s] Loading trace points... [0.001s] Sorting trace points... [0.79s] Computing alignments... [29.549s] Deallocating buffers... [0.014s] Loading trace points... [0.074s] Sorting trace points... [0.857s] Computing alignments... [30.184s] Deallocating buffers... [0.015s] Loading trace points... [0.051s] Sorting trace points... [1.131s] Computing alignments... [30.05s] Deallocating buffers... [0.013s] Loading trace points... [0.049s] Sorting trace points... [1.118s] Computing alignments... [30.181s] Deallocating buffers... [0.013s] Loading trace points... [0.045s] Sorting trace points... [1.13s] Computing alignments... [29.809s] Deallocating buffers... [0.015s] Loading trace points... [0.056s] Sorting trace points... [0.979s] Computing alignments... [29.619s] Deallocating buffers... [0.013s] Loading trace points... [0.06s] Sorting trace points... [1.156s] Computing alignments... [30.637s] Deallocating buffers... [0.013s] Loading trace points... [0.081s] Sorting trace points... [1.205s] Computing alignments... [31.709s] Deallocating buffers... [0.016s] Loading trace points... [0.053s] Sorting trace points... [1.21s] Computing alignments... [31.421s] Deallocating buffers... [0.013s] Loading trace points... [0.059s] Sorting trace points... [1.205s] Computing alignments... [31.835s] Deallocating buffers... [0.017s] Loading trace points... [0.054s] Sorting trace points... [1.219s] Computing alignments... [31.703s] Deallocating buffers... [0.016s] Loading trace points... [0.055s] Sorting trace points... [1.202s] Computing alignments... [32.112s] Deallocating buffers... [0.016s] Loading trace points... [0.051s] Sorting trace points... [0.896s] Computing alignments... [31.992s] Deallocating buffers... [0.015s] Loading trace points... [0s] Sorting trace points... [1.209s] Computing alignments... [31.774s] Deallocating buffers... [0.019s] Loading trace points... [0s] [516.312s] Deallocating reference... [0.055s] Loading reference sequences... [29.602s] Masking reference... [30.941s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.007s] Building reference histograms... [32.632s] Allocating buffers... [0.001s] Processing query block 1, reference block 3/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.53s] Building query seed array... [2.109s] Computing hash join... [6.648s] Masking low complexity seeds... [0.515s] Searching alignments... [73.754s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 1/2, index chunk 2/4. Building reference seed array... [13.02s] Building query seed array... [2.841s] Computing hash join... [6.663s] Masking low complexity seeds... [0.34s] Searching alignments... [46.569s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 1/2, index chunk 3/4. Building reference seed array... [14.123s] Building query seed array... [2.79s] Computing hash join... [6.195s] Masking low complexity seeds... [0.306s] Searching alignments... [43.481s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.462s] Building query seed array... [2.204s] Computing hash join... [6.512s] Masking low complexity seeds... [0.265s] Searching alignments... [38.413s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.299s] Building query seed array... [2.001s] Computing hash join... [6.451s] Masking low complexity seeds... [0.278s] Searching alignments... [40.427s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.978s] Building query seed array... [2.36s] Computing hash join... [6.844s] Masking low complexity seeds... [0.356s] Searching alignments... [30.753s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.677s] Building query seed array... [2.473s] Computing hash join... [6.978s] Masking low complexity seeds... [0.348s] Searching alignments... [35.396s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.515s] Building query seed array... [1.95s] Computing hash join... [6.986s] Masking low complexity seeds... [0.343s] Searching alignments... [29.044s] Deallocating memory... [0s] Deallocating buffers... [1.716s] Clearing query masking... [1.597s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [5.887s] Sorting trace points... [1.276s] Computing alignments... [29.925s] Deallocating buffers... [0.014s] Loading trace points... [0.725s] Sorting trace points... [1.15s] Computing alignments... [29.568s] Deallocating buffers... [0.015s] Loading trace points... [0.049s] Sorting trace points... [1.161s] Computing alignments... [29.648s] Deallocating buffers... [0.013s] Loading trace points... [0.259s] Sorting trace points... [1.149s] Computing alignments... [30.263s] Deallocating buffers... [0.015s] Loading trace points... [0.056s] Sorting trace points... [1.127s] Computing alignments... [30.177s] Deallocating buffers... [0.049s] Loading trace points... [0.046s] Sorting trace points... [1.257s] Computing alignments... [30.232s] Deallocating buffers... [0.037s] Loading trace points... [0.048s] Sorting trace points... [1.122s] Computing alignments... [29.721s] Deallocating buffers... [0.013s] Loading trace points... [0.071s] Sorting trace points... [1.106s] Computing alignments... [29.821s] Deallocating buffers... [0.015s] Loading trace points... [0.064s] Sorting trace points... [1.131s] Computing alignments... [30.704s] Deallocating buffers... [0.016s] Loading trace points... [0.001s] Sorting trace points... [1.218s] Computing alignments... [31.805s] Deallocating buffers... [0.013s] Loading trace points... [0.074s] Sorting trace points... [1.177s] Computing alignments... [31.603s] Deallocating buffers... [0.017s] Loading trace points... [0.07s] Sorting trace points... [1.218s] Computing alignments... [31.917s] Deallocating buffers... [0.017s] Loading trace points... [0.076s] Sorting trace points... [1.184s] Computing alignments... [31.832s] Deallocating buffers... [0.016s] Loading trace points... [0.066s] Sorting trace points... [1.216s] Computing alignments... [32.306s] Deallocating buffers... [0.059s] Loading trace points... [0.067s] Sorting trace points... [1.03s] Computing alignments... [32.003s] Deallocating buffers... [0.014s] Loading trace points... [0s] Sorting trace points... [1.198s] Computing alignments... [31.709s] Deallocating buffers... [0.017s] Loading trace points... [0s] [519.972s] Deallocating reference... [0.059s] Loading reference sequences... [29.232s] Masking reference... [30.897s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.007s] Building reference histograms... [32.423s] Allocating buffers... [0.001s] Processing query block 1, reference block 4/14, shape 1/2, index chunk 1/4. Building reference seed array... [9.963s] Building query seed array... [2.08s] Computing hash join... [6.417s] Masking low complexity seeds... [0.271s] Searching alignments... [72.174s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.808s] Building query seed array... [2.92s] Computing hash join... [6.272s] Masking low complexity seeds... [0.289s] Searching alignments... [47.527s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.523s] Building query seed array... [2.638s] Computing hash join... [7.107s] Masking low complexity seeds... [0.252s] Searching alignments... [43.67s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.536s] Building query seed array... [2.379s] Computing hash join... [6.409s] Masking low complexity seeds... [0.261s] Searching alignments... [38.202s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.502s] Building query seed array... [2.083s] Computing hash join... [6.235s] Masking low complexity seeds... [0.244s] Searching alignments... [39.155s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.661s] Building query seed array... [2.408s] Computing hash join... [6.167s] Masking low complexity seeds... [0.252s] Searching alignments... [31.94s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.936s] Building query seed array... [2.513s] Computing hash join... [6.199s] Masking low complexity seeds... [0.251s] Searching alignments... [32.839s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.631s] Building query seed array... [2.048s] Computing hash join... [6.24s] Masking low complexity seeds... [0.241s] Searching alignments... [28.469s] Deallocating memory... [0s] Deallocating buffers... [1.618s] Clearing query masking... [1.642s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [6s] Sorting trace points... [1.235s] Computing alignments... [29.98s] Deallocating buffers... [0.014s] Loading trace points... [0.066s] Sorting trace points... [1.141s] Computing alignments... [29.566s] Deallocating buffers... [0.087s] Loading trace points... [0.044s] Sorting trace points... [0.939s] Computing alignments... [29.709s] Deallocating buffers... [0.015s] Loading trace points... [0.001s] Sorting trace points... [0.915s] Computing alignments... [30.139s] Deallocating buffers... [0.015s] Loading trace points... [0.075s] Sorting trace points... [1.164s] Computing alignments... [30.352s] Deallocating buffers... [0.013s] Loading trace points... [0.059s] Sorting trace points... [1.134s] Computing alignments... [30.409s] Deallocating buffers... [0.013s] Loading trace points... [0.053s] Sorting trace points... [0.826s] Computing alignments... [29.881s] Deallocating buffers... [0.014s] Loading trace points... [0.066s] Sorting trace points... [1.09s] Computing alignments... [29.759s] Deallocating buffers... [0.012s] Loading trace points... [0.051s] Sorting trace points... [1.14s] Computing alignments... [30.746s] Deallocating buffers... [0.016s] Loading trace points... [0s] Sorting trace points... [1.217s] Computing alignments... [31.831s] Deallocating buffers... [0.014s] Loading trace points... [0.101s] Sorting trace points... [1.112s] Computing alignments... [31.571s] Deallocating buffers... [0.016s] Loading trace points... [0.053s] Sorting trace points... [1.229s] Computing alignments... [31.933s] Deallocating buffers... [0.013s] Loading trace points... [0.075s] Sorting trace points... [1.159s] Computing alignments... [31.787s] Deallocating buffers... [0.016s] Loading trace points... [0.073s] Sorting trace points... [1.199s] Computing alignments... [32.198s] Deallocating buffers... [0.018s] Loading trace points... [0.103s] Sorting trace points... [0.993s] Computing alignments... [32.056s] Deallocating buffers... [0.015s] Loading trace points... [0s] Sorting trace points... [1.211s] Computing alignments... [31.694s] Deallocating buffers... [0.013s] Loading trace points... [0s] [518.683s] Deallocating reference... [0.056s] Loading reference sequences... [30.385s] Masking reference... [32.112s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.008s] Building reference histograms... [32.267s] Allocating buffers... [0s] Processing query block 1, reference block 5/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.239s] Building query seed array... [2.058s] Computing hash join... [6.479s] Masking low complexity seeds... [0.252s] Searching alignments... [70.872s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 1/2, index chunk 2/4. Building reference seed array... [13.755s] Building query seed array... [2.965s] Computing hash join... [6.089s] Masking low complexity seeds... [0.275s] Searching alignments... [45.139s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 1/2, index chunk 3/4. Building reference seed array... [14.12s] Building query seed array... [2.799s] Computing hash join... [6.244s] Masking low complexity seeds... [0.336s] Searching alignments... [41.07s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.831s] Building query seed array... [2.425s] Computing hash join... [5.754s] Masking low complexity seeds... [0.259s] Searching alignments... [36.768s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.567s] Building query seed array... [2.231s] Computing hash join... [5.574s] Masking low complexity seeds... [0.245s] Searching alignments... [39.781s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 2/2, index chunk 2/4. Building reference seed array... [13.269s] Building query seed array... [2.358s] Computing hash join... [5.578s] Masking low complexity seeds... [0.244s] Searching alignments... [30.592s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.978s] Building query seed array... [2.46s] Computing hash join... [5.581s] Masking low complexity seeds... [0.236s] Searching alignments... [33.428s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.295s] Building query seed array... [2.048s] Computing hash join... [5.947s] Masking low complexity seeds... [0.253s] Searching alignments... [28.974s] Deallocating memory... [0s] Deallocating buffers... [2.308s] Clearing query masking... [1.617s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [6.231s] Sorting trace points... [1.172s] Computing alignments... [29.879s] Deallocating buffers... [0.013s] Loading trace points... [0.044s] Sorting trace points... [0.873s] Computing alignments... [29.69s] Deallocating buffers... [0.014s] Loading trace points... [0.044s] Sorting trace points... [1.122s] Computing alignments... [29.747s] Deallocating buffers... [0.013s] Loading trace points... [0s] Sorting trace points... [1.205s] Computing alignments... [30.242s] Deallocating buffers... [0.125s] Loading trace points... [0.077s] Sorting trace points... [1.198s] Computing alignments... [30.32s] Deallocating buffers... [0.016s] Loading trace points... [0.044s] Sorting trace points... [0.939s] Computing alignments... [30.419s] Deallocating buffers... [0.016s] Loading trace points... [0.05s] Sorting trace points... [1.118s] Computing alignments... [29.852s] Deallocating buffers... [0.016s] Loading trace points... [0.07s] Sorting trace points... [0.859s] Computing alignments... [29.737s] Deallocating buffers... [0.014s] Loading trace points... [0.065s] Sorting trace points... [1.169s] Computing alignments... [30.793s] Deallocating buffers... [0.013s] Loading trace points... [0.069s] Sorting trace points... [1.213s] Computing alignments... [31.733s] Deallocating buffers... [0.017s] Loading trace points... [0.068s] Sorting trace points... [1.218s] Computing alignments... [31.568s] Deallocating buffers... [0.013s] Loading trace points... [0.04s] Sorting trace points... [1.045s] Computing alignments... [31.897s] Deallocating buffers... [0.015s] Loading trace points... [0.061s] Sorting trace points... [1.226s] Computing alignments... [31.786s] Deallocating buffers... [0.017s] Loading trace points... [0.051s] Sorting trace points... [1.428s] Computing alignments... [32.369s] Deallocating buffers... [0.244s] Loading trace points... [0.522s] Sorting trace points... [1.122s] Computing alignments... [31.948s] Deallocating buffers... [0.016s] Loading trace points... [0s] Sorting trace points... [1.216s] Computing alignments... [31.689s] Deallocating buffers... [0.014s] Loading trace points... [0s] [519.846s] Deallocating reference... [0.058s] Loading reference sequences... [31.953s] Masking reference... [32.169s] Initializing dictionary... [0.079s] Initializing temporary storage... [0.008s] Building reference histograms... [32.353s] Allocating buffers... [0s] Processing query block 1, reference block 6/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.393s] Building query seed array... [2.042s] Computing hash join... [6.918s] Masking low complexity seeds... [0.261s] Searching alignments... [69.418s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.392s] Building query seed array... [3.06s] Computing hash join... [6.495s] Masking low complexity seeds... [0.263s] Searching alignments... [46.193s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.608s] Building query seed array... [2.758s] Computing hash join... [6.394s] Masking low complexity seeds... [0.27s] Searching alignments... [41.982s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.102s] Building query seed array... [2.251s] Computing hash join... [6.381s] Masking low complexity seeds... [0.287s] Searching alignments... [38.081s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.581s] Building query seed array... [2.16s] Computing hash join... [6.214s] Masking low complexity seeds... [0.266s] Searching alignments... [38.772s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.783s] Building query seed array... [2.422s] Computing hash join... [6.426s] Masking low complexity seeds... [0.241s] Searching alignments... [31.235s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 2/2, index chunk 3/4. Building reference seed array... [14.043s] Building query seed array... [2.525s] Computing hash join... [6.336s] Masking low complexity seeds... [0.255s] Searching alignments... [32.812s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.354s] Building query seed array... [2.03s] Computing hash join... [6.028s] Masking low complexity seeds... [0.242s] Searching alignments... [27.916s] Deallocating memory... [0s] Deallocating buffers... [1.644s] Clearing query masking... [1.566s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [6.231s] Sorting trace points... [1.212s] Computing alignments... [29.487s] Deallocating buffers... [0.015s] Loading trace points... [0.076s] Sorting trace points... [1.111s] Computing alignments... [29.322s] Deallocating buffers... [0.016s] Loading trace points... [0.084s] Sorting trace points... [0.96s] Computing alignments... [29.334s] Deallocating buffers... [0.015s] Loading trace points... [0.118s] Sorting trace points... [1.136s] Computing alignments... [29.905s] Deallocating buffers... [0.013s] Loading trace points... [0.044s] Sorting trace points... [1.095s] Computing alignments... [29.88s] Deallocating buffers... [0.013s] Loading trace points... [0.051s] Sorting trace points... [1.145s] Computing alignments... [29.995s] Deallocating buffers... [0.013s] Loading trace points... [0.077s] Sorting trace points... [1.121s] Computing alignments... [29.541s] Deallocating buffers... [0.012s] Loading trace points... [0.063s] Sorting trace points... [0.864s] Computing alignments... [29.398s] Deallocating buffers... [0.014s] Loading trace points... [0.037s] Sorting trace points... [0.875s] Computing alignments... [30.42s] Deallocating buffers... [0.015s] Loading trace points... [0.065s] Sorting trace points... [1.171s] Computing alignments... [31.427s] Deallocating buffers... [0.017s] Loading trace points... [0.044s] Sorting trace points... [1.185s] Computing alignments... [31.272s] Deallocating buffers... [0.013s] Loading trace points... [0.091s] Sorting trace points... [1.07s] Computing alignments... [31.63s] Deallocating buffers... [0.014s] Loading trace points... [0.055s] Sorting trace points... [1.185s] Computing alignments... [31.62s] Deallocating buffers... [0.013s] Loading trace points... [0.057s] Sorting trace points... [0.99s] Computing alignments... [31.806s] Deallocating buffers... [0.016s] Loading trace points... [0.069s] Sorting trace points... [0.979s] Computing alignments... [31.701s] Deallocating buffers... [0.014s] Loading trace points... [0s] Sorting trace points... [1.17s] Computing alignments... [31.488s] Deallocating buffers... [0.014s] Loading trace points... [0s] [513.041s] Deallocating reference... [0.17s] Loading reference sequences... [33.659s] Masking reference... [31.315s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.008s] Building reference histograms... [32.122s] Allocating buffers... [0s] Processing query block 1, reference block 7/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.671s] Building query seed array... [2.134s] Computing hash join... [7.091s] Masking low complexity seeds... [0.255s] Searching alignments... [73.391s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 1/2, index chunk 2/4. Building reference seed array... [13.122s] Building query seed array... [3.179s] Computing hash join... [6.992s] Masking low complexity seeds... [0.26s] Searching alignments... [46.207s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 1/2, index chunk 3/4. Building reference seed array... [14.375s] Building query seed array... [2.759s] Computing hash join... [6.323s] Masking low complexity seeds... [0.288s] Searching alignments... [41.195s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.45s] Building query seed array... [2.36s] Computing hash join... [6.671s] Masking low complexity seeds... [0.28s] Searching alignments... [38.047s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.206s] Building query seed array... [1.971s] Computing hash join... [6.414s] Masking low complexity seeds... [0.271s] Searching alignments... [40.779s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 2/2, index chunk 2/4. Building reference seed array... [13.115s] Building query seed array... [2.457s] Computing hash join... [6.802s] Masking low complexity seeds... [0.242s] Searching alignments... [30.696s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.782s] Building query seed array... [2.668s] Computing hash join... [6.848s] Masking low complexity seeds... [0.242s] Searching alignments... [33.444s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.111s] Building query seed array... [2.116s] Computing hash join... [6.647s] Masking low complexity seeds... [0.236s] Searching alignments... [28.336s] Deallocating memory... [0s] Deallocating buffers... [1.84s] Clearing query masking... [1.766s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [5.942s] Sorting trace points... [1.198s] Computing alignments... [29.772s] Deallocating buffers... [0.012s] Loading trace points... [0.05s] Sorting trace points... [1.105s] Computing alignments... [29.531s] Deallocating buffers... [0.015s] Loading trace points... [0.043s] Sorting trace points... [1.125s] Computing alignments... [29.77s] Deallocating buffers... [0.013s] Loading trace points... [0.044s] Sorting trace points... [0.831s] Computing alignments... [30.035s] Deallocating buffers... [0.014s] Loading trace points... [0.061s] Sorting trace points... [0.833s] Computing alignments... [30.19s] Deallocating buffers... [0.014s] Loading trace points... [0.072s] Sorting trace points... [1.165s] Computing alignments... [30.21s] Deallocating buffers... [0.013s] Loading trace points... [0.06s] Sorting trace points... [1.021s] Computing alignments... [29.698s] Deallocating buffers... [0.015s] Loading trace points... [0.069s] Sorting trace points... [0.847s] Computing alignments... [29.677s] Deallocating buffers... [0.014s] Loading trace points... [0.053s] Sorting trace points... [1.027s] Computing alignments... [30.702s] Deallocating buffers... [0.015s] Loading trace points... [0.001s] Sorting trace points... [1.256s] Computing alignments... [31.686s] Deallocating buffers... [0.013s] Loading trace points... [0.056s] Sorting trace points... [1.239s] Computing alignments... [31.476s] Deallocating buffers... [0.016s] Loading trace points... [0.056s] Sorting trace points... [0.97s] Computing alignments... [31.852s] Deallocating buffers... [0.016s] Loading trace points... [0.073s] Sorting trace points... [1.158s] Computing alignments... [31.711s] Deallocating buffers... [0.014s] Loading trace points... [0.077s] Sorting trace points... [1.267s] Computing alignments... [32.114s] Deallocating buffers... [0.019s] Loading trace points... [0.088s] Sorting trace points... [0.946s] Computing alignments... [31.994s] Deallocating buffers... [0.015s] Loading trace points... [0s] Sorting trace points... [1.206s] Computing alignments... [31.696s] Deallocating buffers... [0.013s] Loading trace points... [0s] [516.482s] Deallocating reference... [0.058s] Loading reference sequences... [30.245s] Masking reference... [31.074s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.009s] Building reference histograms... [33.013s] Allocating buffers... [0s] Processing query block 1, reference block 8/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.045s] Building query seed array... [2.092s] Computing hash join... [6.264s] Masking low complexity seeds... [0.285s] Searching alignments... [69.925s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 1/2, index chunk 2/4. Building reference seed array... [13.327s] Building query seed array... [3.105s] Computing hash join... [6.796s] Masking low complexity seeds... [0.264s] Searching alignments... [46.832s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.714s] Building query seed array... [2.703s] Computing hash join... [6.401s] Masking low complexity seeds... [0.274s] Searching alignments... [41.798s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.657s] Building query seed array... [2.413s] Computing hash join... [6.538s] Masking low complexity seeds... [0.299s] Searching alignments... [37.885s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.388s] Building query seed array... [2.12s] Computing hash join... [6.206s] Masking low complexity seeds... [0.263s] Searching alignments... [40.057s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.861s] Building query seed array... [2.287s] Computing hash join... [6.716s] Masking low complexity seeds... [0.258s] Searching alignments... [31.062s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.541s] Building query seed array... [2.576s] Computing hash join... [6.307s] Masking low complexity seeds... [0.274s] Searching alignments... [33.087s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.541s] Building query seed array... [2.114s] Computing hash join... [6.183s] Masking low complexity seeds... [0.255s] Searching alignments... [29.721s] Deallocating memory... [0s] Deallocating buffers... [1.895s] Clearing query masking... [1.645s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [5.995s] Sorting trace points... [1.218s] Computing alignments... [29.809s] Deallocating buffers... [0.015s] Loading trace points... [0.056s] Sorting trace points... [1.077s] Computing alignments... [29.573s] Deallocating buffers... [0.015s] Loading trace points... [0.047s] Sorting trace points... [0.779s] Computing alignments... [29.629s] Deallocating buffers... [0.013s] Loading trace points... [0.042s] Sorting trace points... [1.144s] Computing alignments... [30.075s] Deallocating buffers... [0.016s] Loading trace points... [0.075s] Sorting trace points... [0.82s] Computing alignments... [30.142s] Deallocating buffers... [0.014s] Loading trace points... [0.07s] Sorting trace points... [1.176s] Computing alignments... [30.256s] Deallocating buffers... [0.013s] Loading trace points... [0.056s] Sorting trace points... [0.949s] Computing alignments... [29.718s] Deallocating buffers... [0.013s] Loading trace points... [0.071s] Sorting trace points... [1.131s] Computing alignments... [29.618s] Deallocating buffers... [0.013s] Loading trace points... [0.072s] Sorting trace points... [1.109s] Computing alignments... [30.631s] Deallocating buffers... [0.016s] Loading trace points... [0.001s] Sorting trace points... [1.092s] Computing alignments... [31.73s] Deallocating buffers... [0.017s] Loading trace points... [0.068s] Sorting trace points... [1.274s] Computing alignments... [31.545s] Deallocating buffers... [0.013s] Loading trace points... [0.067s] Sorting trace points... [1.2s] Computing alignments... [31.83s] Deallocating buffers... [0.017s] Loading trace points... [0.085s] Sorting trace points... [1.21s] Computing alignments... [31.749s] Deallocating buffers... [0.017s] Loading trace points... [0.129s] Sorting trace points... [1.183s] Computing alignments... [32.131s] Deallocating buffers... [0.014s] Loading trace points... [0.091s] Sorting trace points... [1.199s] Computing alignments... [31.939s] Deallocating buffers... [0.013s] Loading trace points... [0s] Sorting trace points... [1.261s] Computing alignments... [31.618s] Deallocating buffers... [0.12s] Loading trace points... [0s] [517.313s] Deallocating reference... [0.058s] Loading reference sequences... [30.088s] Masking reference... [32.181s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.007s] Building reference histograms... [32.211s] Allocating buffers... [0s] Processing query block 1, reference block 9/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.566s] Building query seed array... [2.132s] Computing hash join... [7.055s] Masking low complexity seeds... [0.261s] Searching alignments... [71.476s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.667s] Building query seed array... [3.08s] Computing hash join... [6.93s] Masking low complexity seeds... [0.259s] Searching alignments... [46.138s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.559s] Building query seed array... [2.827s] Computing hash join... [6.482s] Masking low complexity seeds... [0.293s] Searching alignments... [41.159s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.831s] Building query seed array... [2.345s] Computing hash join... [6.502s] Masking low complexity seeds... [0.265s] Searching alignments... [37.226s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.445s] Building query seed array... [2.02s] Computing hash join... [6.335s] Masking low complexity seeds... [0.257s] Searching alignments... [39.182s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.993s] Building query seed array... [2.363s] Computing hash join... [6.682s] Masking low complexity seeds... [0.275s] Searching alignments... [30.792s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 2/2, index chunk 3/4. Building reference seed array... [14.468s] Building query seed array... [2.496s] Computing hash join... [6.446s] Masking low complexity seeds... [0.298s] Searching alignments... [33.798s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.698s] Building query seed array... [2.098s] Computing hash join... [6.389s] Masking low complexity seeds... [0.242s] Searching alignments... [28.353s] Deallocating memory... [0s] Deallocating buffers... [1.961s] Clearing query masking... [1.6s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [6.009s] Sorting trace points... [1.212s] Computing alignments... [29.773s] Deallocating buffers... [0.013s] Loading trace points... [0.053s] Sorting trace points... [1.111s] Computing alignments... [29.528s] Deallocating buffers... [0.076s] Loading trace points... [0.034s] Sorting trace points... [0.809s] Computing alignments... [29.555s] Deallocating buffers... [0.014s] Loading trace points... [0.098s] Sorting trace points... [1.133s] Computing alignments... [30.032s] Deallocating buffers... [0.013s] Loading trace points... [0.065s] Sorting trace points... [1.181s] Computing alignments... [30.123s] Deallocating buffers... [0.013s] Loading trace points... [0.062s] Sorting trace points... [1.179s] Computing alignments... [30.247s] Deallocating buffers... [0.013s] Loading trace points... [0.057s] Sorting trace points... [1.105s] Computing alignments... [29.7s] Deallocating buffers... [0.012s] Loading trace points... [0.071s] Sorting trace points... [1.13s] Computing alignments... [29.609s] Deallocating buffers... [0.013s] Loading trace points... [0.101s] Sorting trace points... [1.183s] Computing alignments... [30.672s] Deallocating buffers... [0.016s] Loading trace points... [0.072s] Sorting trace points... [1.1s] Computing alignments... [31.69s] Deallocating buffers... [0.014s] Loading trace points... [0.116s] Sorting trace points... [1.194s] Computing alignments... [31.57s] Deallocating buffers... [0.016s] Loading trace points... [0.05s] Sorting trace points... [1.217s] Computing alignments... [32.05s] Deallocating buffers... [0.017s] Loading trace points... [0.073s] Sorting trace points... [1.203s] Computing alignments... [31.799s] Deallocating buffers... [0.031s] Loading trace points... [0.055s] Sorting trace points... [1.217s] Computing alignments... [32.205s] Deallocating buffers... [0.016s] Loading trace points... [0.064s] Sorting trace points... [1.226s] Computing alignments... [32.03s] Deallocating buffers... [0.014s] Loading trace points... [0s] Sorting trace points... [1.291s] Computing alignments... [31.783s] Deallocating buffers... [0.108s] Loading trace points... [0s] [518.424s] Deallocating reference... [0.067s] Loading reference sequences... [29.626s] Masking reference... [32.107s] Initializing dictionary... [0.077s] Initializing temporary storage... [0.007s] Building reference histograms... [32.738s] Allocating buffers... [0s] Processing query block 1, reference block 10/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.094s] Building query seed array... [2.116s] Computing hash join... [7.085s] Masking low complexity seeds... [0.251s] Searching alignments... [72.923s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 1/2, index chunk 2/4. Building reference seed array... [13.001s] Building query seed array... [3.129s] Computing hash join... [6.986s] Masking low complexity seeds... [0.255s] Searching alignments... [47.524s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.586s] Building query seed array... [2.743s] Computing hash join... [6.298s] Masking low complexity seeds... [0.274s] Searching alignments... [42.059s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.288s] Building query seed array... [2.348s] Computing hash join... [6.582s] Masking low complexity seeds... [0.302s] Searching alignments... [36.975s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.506s] Building query seed array... [2.064s] Computing hash join... [6.239s] Masking low complexity seeds... [0.253s] Searching alignments... [40.638s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.766s] Building query seed array... [2.339s] Computing hash join... [6.58s] Masking low complexity seeds... [0.249s] Searching alignments... [30.538s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.28s] Building query seed array... [2.367s] Computing hash join... [6.225s] Masking low complexity seeds... [0.284s] Searching alignments... [33.955s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.228s] Building query seed array... [2.033s] Computing hash join... [6.338s] Masking low complexity seeds... [0.235s] Searching alignments... [29.519s] Deallocating memory... [0s] Deallocating buffers... [2.081s] Clearing query masking... [1.598s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [6.148s] Sorting trace points... [1.188s] Computing alignments... [29.721s] Deallocating buffers... [0.014s] Loading trace points... [0.095s] Sorting trace points... [1.093s] Computing alignments... [29.442s] Deallocating buffers... [0.012s] Loading trace points... [0.04s] Sorting trace points... [1.144s] Computing alignments... [29.512s] Deallocating buffers... [0.015s] Loading trace points... [0.094s] Sorting trace points... [0.946s] Computing alignments... [29.99s] Deallocating buffers... [0.015s] Loading trace points... [0.109s] Sorting trace points... [1.017s] Computing alignments... [30.133s] Deallocating buffers... [0.013s] Loading trace points... [0.049s] Sorting trace points... [1.049s] Computing alignments... [30.254s] Deallocating buffers... [0.013s] Loading trace points... [0.057s] Sorting trace points... [0.983s] Computing alignments... [29.622s] Deallocating buffers... [0.013s] Loading trace points... [0.061s] Sorting trace points... [1.113s] Computing alignments... [29.578s] Deallocating buffers... [0.012s] Loading trace points... [0.067s] Sorting trace points... [1.188s] Computing alignments... [30.545s] Deallocating buffers... [0.013s] Loading trace points... [0.076s] Sorting trace points... [1.004s] Computing alignments... [31.609s] Deallocating buffers... [0.016s] Loading trace points... [0.064s] Sorting trace points... [1.214s] Computing alignments... [31.52s] Deallocating buffers... [0.014s] Loading trace points... [0.045s] Sorting trace points... [1.22s] Computing alignments... [31.808s] Deallocating buffers... [0.017s] Loading trace points... [0.083s] Sorting trace points... [0.994s] Computing alignments... [31.768s] Deallocating buffers... [0.016s] Loading trace points... [0.064s] Sorting trace points... [0.924s] Computing alignments... [32.112s] Deallocating buffers... [0.023s] Loading trace points... [0.065s] Sorting trace points... [1.225s] Computing alignments... [31.851s] Deallocating buffers... [0.017s] Loading trace points... [0s] Sorting trace points... [1.041s] Computing alignments... [31.637s] Deallocating buffers... [0.016s] Loading trace points... [0s] [515.996s] Deallocating reference... [0.056s] Loading reference sequences... [31.636s] Masking reference... [30.917s] Initializing dictionary... [0.077s] Initializing temporary storage... [0.006s] Building reference histograms... [32.796s] Allocating buffers... [0s] Processing query block 1, reference block 11/14, shape 1/2, index chunk 1/4. Building reference seed array... [9.95s] Building query seed array... [2.088s] Computing hash join... [7.128s] Masking low complexity seeds... [0.255s] Searching alignments... [69.764s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.701s] Building query seed array... [3.078s] Computing hash join... [6.358s] Masking low complexity seeds... [0.306s] Searching alignments... [47.517s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.991s] Building query seed array... [2.613s] Computing hash join... [7.013s] Masking low complexity seeds... [0.363s] Searching alignments... [42.602s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.231s] Building query seed array... [2.268s] Computing hash join... [6.303s] Masking low complexity seeds... [0.254s] Searching alignments... [37.651s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.538s] Building query seed array... [2.071s] Computing hash join... [6.37s] Masking low complexity seeds... [0.236s] Searching alignments... [39.855s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 2/2, index chunk 2/4. Building reference seed array... [13.193s] Building query seed array... [2.44s] Computing hash join... [6.198s] Masking low complexity seeds... [0.249s] Searching alignments... [31.623s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.946s] Building query seed array... [2.51s] Computing hash join... [6.369s] Masking low complexity seeds... [0.254s] Searching alignments... [33.588s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.208s] Building query seed array... [2.102s] Computing hash join... [6.618s] Masking low complexity seeds... [0.346s] Searching alignments... [27.597s] Deallocating memory... [0s] Deallocating buffers... [2.189s] Clearing query masking... [1.64s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [6.302s] Sorting trace points... [1.144s] Computing alignments... [29.837s] Deallocating buffers... [0.015s] Loading trace points... [0.048s] Sorting trace points... [1.092s] Computing alignments... [29.486s] Deallocating buffers... [0.074s] Loading trace points... [0.079s] Sorting trace points... [1.124s] Computing alignments... [29.612s] Deallocating buffers... [0.012s] Loading trace points... [0.081s] Sorting trace points... [1.129s] Computing alignments... [30.3s] Deallocating buffers... [0.013s] Loading trace points... [0.049s] Sorting trace points... [1.132s] Computing alignments... [30.219s] Deallocating buffers... [0.012s] Loading trace points... [0.059s] Sorting trace points... [1.18s] Computing alignments... [30.319s] Deallocating buffers... [0.016s] Loading trace points... [0.082s] Sorting trace points... [1.104s] Computing alignments... [29.772s] Deallocating buffers... [0.012s] Loading trace points... [0.075s] Sorting trace points... [1.116s] Computing alignments... [29.715s] Deallocating buffers... [0.013s] Loading trace points... [0.03s] Sorting trace points... [1.069s] Computing alignments... [30.591s] Deallocating buffers... [0.013s] Loading trace points... [0.083s] Sorting trace points... [1.251s] Computing alignments... [31.677s] Deallocating buffers... [0.017s] Loading trace points... [0.057s] Sorting trace points... [1.199s] Computing alignments... [31.526s] Deallocating buffers... [0.013s] Loading trace points... [0.073s] Sorting trace points... [1.047s] Computing alignments... [31.809s] Deallocating buffers... [0.014s] Loading trace points... [0.055s] Sorting trace points... [1.132s] Computing alignments... [31.742s] Deallocating buffers... [0.016s] Loading trace points... [0.075s] Sorting trace points... [1.196s] Computing alignments... [32.107s] Deallocating buffers... [0.097s] Loading trace points... [0.113s] Sorting trace points... [1.27s] Computing alignments... [31.904s] Deallocating buffers... [0.017s] Loading trace points... [0s] Sorting trace points... [1.299s] Computing alignments... [31.697s] Deallocating buffers... [0.073s] Loading trace points... [0s] [518.678s] Deallocating reference... [0.065s] Loading reference sequences... [29.323s] Masking reference... [30.905s] Initializing dictionary... [0.077s] Initializing temporary storage... [0.007s] Building reference histograms... [32.747s] Allocating buffers... [0s] Processing query block 1, reference block 12/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.279s] Building query seed array... [2.107s] Computing hash join... [7.019s] Masking low complexity seeds... [0.249s] Searching alignments... [72.1s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 1/2, index chunk 2/4. Building reference seed array... [13.239s] Building query seed array... [2.975s] Computing hash join... [6.893s] Masking low complexity seeds... [0.263s] Searching alignments... [45.238s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.761s] Building query seed array... [2.872s] Computing hash join... [6.341s] Masking low complexity seeds... [0.278s] Searching alignments... [41.784s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.863s] Building query seed array... [2.396s] Computing hash join... [6.489s] Masking low complexity seeds... [0.302s] Searching alignments... [37.19s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.328s] Building query seed array... [2.141s] Computing hash join... [6.283s] Masking low complexity seeds... [0.274s] Searching alignments... [39.68s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.835s] Building query seed array... [2.307s] Computing hash join... [6.671s] Masking low complexity seeds... [0.295s] Searching alignments... [30.76s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 2/2, index chunk 3/4. Building reference seed array... [14.158s] Building query seed array... [2.602s] Computing hash join... [6.237s] Masking low complexity seeds... [0.246s] Searching alignments... [33.974s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 2/2, index chunk 4/4. Building reference seed array... [9.946s] Building query seed array... [2.025s] Computing hash join... [6.637s] Masking low complexity seeds... [0.272s] Searching alignments... [28.416s] Deallocating memory... [0s] Deallocating buffers... [2.106s] Clearing query masking... [1.589s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [6.324s] Sorting trace points... [1.236s] Computing alignments... [29.623s] Deallocating buffers... [0.014s] Loading trace points... [0.055s] Sorting trace points... [1.112s] Computing alignments... [29.548s] Deallocating buffers... [0.072s] Loading trace points... [0.047s] Sorting trace points... [1.131s] Computing alignments... [29.472s] Deallocating buffers... [0.013s] Loading trace points... [0.001s] Sorting trace points... [1.13s] Computing alignments... [29.961s] Deallocating buffers... [0.016s] Loading trace points... [0.058s] Sorting trace points... [1.141s] Computing alignments... [30.04s] Deallocating buffers... [0.012s] Loading trace points... [0.054s] Sorting trace points... [0.872s] Computing alignments... [30.094s] Deallocating buffers... [0.014s] Loading trace points... [0.064s] Sorting trace points... [0.88s] Computing alignments... [29.522s] Deallocating buffers... [0.013s] Loading trace points... [0.074s] Sorting trace points... [1.12s] Computing alignments... [29.584s] Deallocating buffers... [0.015s] Loading trace points... [0.067s] Sorting trace points... [1.268s] Computing alignments... [30.67s] Deallocating buffers... [0.093s] Loading trace points... [0.095s] Sorting trace points... [1.209s] Computing alignments... [31.686s] Deallocating buffers... [0.017s] Loading trace points... [0.073s] Sorting trace points... [1.239s] Computing alignments... [31.643s] Deallocating buffers... [0.017s] Loading trace points... [0.056s] Sorting trace points... [1.217s] Computing alignments... [31.897s] Deallocating buffers... [0.013s] Loading trace points... [0.066s] Sorting trace points... [1.209s] Computing alignments... [31.805s] Deallocating buffers... [0.014s] Loading trace points... [0.056s] Sorting trace points... [0.908s] Computing alignments... [32.21s] Deallocating buffers... [0.017s] Loading trace points... [0.072s] Sorting trace points... [1.103s] Computing alignments... [32.151s] Deallocating buffers... [0.014s] Loading trace points... [0s] Sorting trace points... [0.911s] Computing alignments... [31.695s] Deallocating buffers... [0.015s] Loading trace points... [0s] [517.006s] Deallocating reference... [0.06s] Loading reference sequences... [29.21s] Masking reference... [30.909s] Initializing dictionary... [0.077s] Initializing temporary storage... [0.006s] Building reference histograms... [33.28s] Allocating buffers... [0s] Processing query block 1, reference block 13/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.128s] Building query seed array... [1.993s] Computing hash join... [7.111s] Masking low complexity seeds... [0.271s] Searching alignments... [71.525s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 1/2, index chunk 2/4. Building reference seed array... [13.147s] Building query seed array... [2.957s] Computing hash join... [6.248s] Masking low complexity seeds... [0.308s] Searching alignments... [47.325s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.9s] Building query seed array... [2.591s] Computing hash join... [6.985s] Masking low complexity seeds... [0.268s] Searching alignments... [42.543s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.958s] Building query seed array... [2.372s] Computing hash join... [6.442s] Masking low complexity seeds... [0.265s] Searching alignments... [37.574s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.433s] Building query seed array... [2.111s] Computing hash join... [6.347s] Masking low complexity seeds... [0.237s] Searching alignments... [40.23s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.918s] Building query seed array... [2.411s] Computing hash join... [6.331s] Masking low complexity seeds... [0.28s] Searching alignments... [31.392s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 2/2, index chunk 3/4. Building reference seed array... [14.105s] Building query seed array... [2.418s] Computing hash join... [6.308s] Masking low complexity seeds... [0.245s] Searching alignments... [34.546s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.893s] Building query seed array... [2.144s] Computing hash join... [6.674s] Masking low complexity seeds... [0.234s] Searching alignments... [29.192s] Deallocating memory... [0s] Deallocating buffers... [2.148s] Clearing query masking... [1.666s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [6.348s] Sorting trace points... [1.182s] Computing alignments... [29.738s] Deallocating buffers... [0.014s] Loading trace points... [0.049s] Sorting trace points... [1.128s] Computing alignments... [29.517s] Deallocating buffers... [0.09s] Loading trace points... [0.001s] Sorting trace points... [0.969s] Computing alignments... [29.637s] Deallocating buffers... [0.015s] Loading trace points... [0.08s] Sorting trace points... [0.844s] Computing alignments... [30.316s] Deallocating buffers... [0.014s] Loading trace points... [0.053s] Sorting trace points... [1.206s] Computing alignments... [30.126s] Deallocating buffers... [0.012s] Loading trace points... [0.052s] Sorting trace points... [1.208s] Computing alignments... [30.28s] Deallocating buffers... [0.129s] Loading trace points... [0.05s] Sorting trace points... [1.1s] Computing alignments... [29.586s] Deallocating buffers... [0.015s] Loading trace points... [0.061s] Sorting trace points... [0.996s] Computing alignments... [29.603s] Deallocating buffers... [0.015s] Loading trace points... [0.044s] Sorting trace points... [1.152s] Computing alignments... [30.559s] Deallocating buffers... [0.016s] Loading trace points... [0.068s] Sorting trace points... [1.222s] Computing alignments... [31.61s] Deallocating buffers... [0.013s] Loading trace points... [0.068s] Sorting trace points... [1.085s] Computing alignments... [31.53s] Deallocating buffers... [0.014s] Loading trace points... [0.047s] Sorting trace points... [0.979s] Computing alignments... [31.784s] Deallocating buffers... [0.014s] Loading trace points... [0.065s] Sorting trace points... [0.927s] Computing alignments... [31.676s] Deallocating buffers... [0.014s] Loading trace points... [0.069s] Sorting trace points... [0.941s] Computing alignments... [32.047s] Deallocating buffers... [0.018s] Loading trace points... [0.062s] Sorting trace points... [1.232s] Computing alignments... [31.868s] Deallocating buffers... [0.014s] Loading trace points... [0s] Sorting trace points... [1.207s] Computing alignments... [31.6s] Deallocating buffers... [0.017s] Loading trace points... [0s] [516.543s] Deallocating reference... [0.056s] Loading reference sequences... [24.523s] Masking reference... [26.002s] Initializing dictionary... [0.063s] Initializing temporary storage... [0.008s] Building reference histograms... [26.324s] Allocating buffers... [0s] Processing query block 1, reference block 14/14, shape 1/2, index chunk 1/4. Building reference seed array... [8.176s] Building query seed array... [2.059s] Computing hash join... [4.985s] Masking low complexity seeds... [0.26s] Searching alignments... [57.491s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 1/2, index chunk 2/4. Building reference seed array... [10.502s] Building query seed array... [3.055s] Computing hash join... [5.264s] Masking low complexity seeds... [0.25s] Searching alignments... [38.78s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 1/2, index chunk 3/4. Building reference seed array... [11.237s] Building query seed array... [2.706s] Computing hash join... [5.06s] Masking low complexity seeds... [0.261s] Searching alignments... [35.603s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 1/2, index chunk 4/4. Building reference seed array... [8.266s] Building query seed array... [2.267s] Computing hash join... [5.079s] Masking low complexity seeds... [0.253s] Searching alignments... [30.272s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 2/2, index chunk 1/4. Building reference seed array... [8.321s] Building query seed array... [2.146s] Computing hash join... [4.992s] Masking low complexity seeds... [0.233s] Searching alignments... [31.905s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 2/2, index chunk 2/4. Building reference seed array... [10.195s] Building query seed array... [2.391s] Computing hash join... [4.94s] Masking low complexity seeds... [0.222s] Searching alignments... [25.164s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 2/2, index chunk 3/4. Building reference seed array... [10.823s] Building query seed array... [2.509s] Computing hash join... [5.217s] Masking low complexity seeds... [0.285s] Searching alignments... [27.854s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 2/2, index chunk 4/4. Building reference seed array... [8.406s] Building query seed array... [2.042s] Computing hash join... [5.098s] Masking low complexity seeds... [0.231s] Searching alignments... [23.284s] Deallocating memory... [0s] Deallocating buffers... [0.901s] Clearing query masking... [1.566s] Opening temporary output file... [0.017s] Computing alignments... Loading trace points... [10.357s] Sorting trace points... [1.915s] Computing alignments... [47.147s] Deallocating buffers... [0.024s] Loading trace points... [0.059s] Sorting trace points... [1.811s] Computing alignments... [47.545s] Deallocating buffers... [0.025s] Loading trace points... [0.101s] Sorting trace points... [1.69s] Computing alignments... [48.045s] Deallocating buffers... [0.186s] Loading trace points... [0.106s] Sorting trace points... [1.549s] Computing alignments... [47.319s] Deallocating buffers... [0.023s] Loading trace points... [0.125s] Sorting trace points... [1.995s] Computing alignments... [49.736s] Deallocating buffers... [0.026s] Loading trace points... [0.128s] Sorting trace points... [1.588s] Computing alignments... [50.506s] Deallocating buffers... [0.023s] Loading trace points... [0.164s] Sorting trace points... [2.027s] Computing alignments... [50.721s] Deallocating buffers... [0.021s] Loading trace points... [0s] Sorting trace points... [1.643s] Computing alignments... [50.267s] Deallocating buffers... [0.025s] Loading trace points... [0s] [416.977s] Deallocating reference... [0.049s] Loading reference sequences... [0.07s] Deallocating buffers... [0s] Joining output blocks... Joining output blocks... [2152.73s] [2152.73s] Deallocating queries... [0.074s] Loading query sequences... [0s] Closing the input file... [0s] Closing the output file... Loading dictionary... [3.597s] [4.64s] Closing the database... [0s] Cleaning up... [0s] Total time = 17673.5s Reported 2358462396 pairwise alignments, 2358462396 HSPs. 13605195 queries aligned. DIAMOND BLASTx on /gscratch/srlab/sam/data/P_verrucosa/RNAseq/E7_R2.fastp-trim.20230215.fq.gz complete: E7_R2.blastx.meganized.daa Now MEGANizing E7_R2.blastx.meganized.daa Version MEGAN Community Edition (version 6.22.0, built 19 Feb 2022) Author(s) Daniel H. Huson Copyright (C) 2022 Daniel H. Huson. This program comes with ABSOLUTELY NO WARRANTY. Java version: 17.0.2 Functional classifications to use: EC, EGGNOG, GTDB, INTERPRO2GO, SEED Loading ncbi.map: 2,396,736 Loading ncbi.tre: 2,396,740 Loading ec.map: 8,200 Loading ec.tre: 8,204 Loading eggnog.map: 30,875 Loading eggnog.tre: 30,986 Loading gtdb.map: 240,103 Loading gtdb.tre: 240,107 Loading interpro2go.map: 14,242 Loading interpro2go.tre: 28,907 Loading seed.map: 961 Loading seed.tre: 962 Meganizing: E7_R2.blastx.meganized.daa Meganizing init Annotating DAA file using FAST mode (accession database and first accession per line) Annotating references 10% 20% 30% 40% 50% 60% 70% 100% (534.1s) Writing 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (1.2s) Binning reads Initializing... Initializing binning... Using 'Naive LCA' algorithm for binning: Taxonomy Using Best-Hit algorithm for binning: SEED Using Best-Hit algorithm for binning: EGGNOG Using 'Naive LCA' algorithm for binning: GTDB Using Best-Hit algorithm for binning: EC Using Best-Hit algorithm for binning: INTERPRO2GO Binning reads... Binning reads Analyzing alignments 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (4,518.0s) Total reads: 13,605,195 With hits: 13,605,195 Alignments: 2,351,791,335 Assig. Taxonomy: 12,635,305 Assig. SEED: 94,880 Assig. EGGNOG: 43,723 Assig. GTDB: 364,349 Assig. EC: 2,152,661 Assig. INTERPRO2GO: 1,125,059 MinSupport set to: 6802 Binning reads Applying min-support & disabled filter to Taxonomy... 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (0.3s) Min-supp. changes: 3,756 Binning reads Applying min-support & disabled filter to GTDB... 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (9.7s) Min-supp. changes: 2,898 Binning reads Writing classification tables 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (31.7s) Binning reads Syncing 100% (0.5s) Class. Taxonomy: 69 Class. SEED: 483 Class. EGGNOG: 1,745 Class. GTDB: 17 Class. EC: 2,304 Class. INTERPRO2GO: 7,692 Total time: 5,104s Peak memory: 35.2 of 195.3G MEGANization of E7_R2.blastx.meganized.daa completed. Generating MD5 checksum for /gscratch/srlab/sam/data/P_verrucosa/RNAseq/E8_R1.fastp-trim.20230215.fq.gz... 1ce9ecd8ed14fa4453a0485fb2e1e203 /gscratch/srlab/sam/data/P_verrucosa/RNAseq/E8_R1.fastp-trim.20230215.fq.gz Running DIAMOND BLASTx on /gscratch/srlab/sam/data/P_verrucosa/RNAseq/E8_R1.fastp-trim.20230215.fq.gz. diamond v2.1.1.155 (C) Max Planck Society for the Advancement of Science Documentation, support and updates available at http://www.diamondsearch.org Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021) #CPU threads: 40 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: Percentage range of top alignment score to report hits: 5 Opening the database... [0.314s] Database: /gscratch/srlab/blastdbs/20230215-ncbi-nr/20230215-ncbi-nr.dmnd (type: Diamond database, sequences: 526308523, letters: 207134680681) Block size = 15000000000 Opening the input file... [0.714s] Opening the output file... [0s] Loading query sequences... [72.176s] Masking queries... [18.488s] Algorithm: Double-indexed Building query histograms... [17.668s] Loading reference sequences... [29.181s] Masking reference... [32.167s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.008s] Building reference histograms... [32.599s] Allocating buffers... [0s] Processing query block 1, reference block 1/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.695s] Building query seed array... [2.054s] Computing hash join... [6.4s] Masking low complexity seeds... [0.237s] Searching alignments... [73.806s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.257s] Building query seed array... [2.986s] Computing hash join... [6.272s] Masking low complexity seeds... [0.242s] Searching alignments... [47.066s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.721s] Building query seed array... [2.712s] Computing hash join... [6.186s] Masking low complexity seeds... [0.254s] Searching alignments... [42.778s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.265s] Building query seed array... [2.254s] Computing hash join... [6.295s] Masking low complexity seeds... [0.254s] Searching alignments... [38.558s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.519s] Building query seed array... [1.971s] Computing hash join... [6.148s] Masking low complexity seeds... [0.22s] Searching alignments... [38.362s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.374s] Building query seed array... [2.326s] Computing hash join... [6.33s] Masking low complexity seeds... [0.23s] Searching alignments... [30.103s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.23s] Building query seed array... [2.362s] Computing hash join... [6.169s] Masking low complexity seeds... [0.25s] Searching alignments... [33.76s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.043s] Building query seed array... [2.083s] Computing hash join... [6.11s] Masking low complexity seeds... [0.213s] Searching alignments... [28.864s] Deallocating memory... [0s] Deallocating buffers... [1.565s] Clearing query masking... [1.626s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [6.162s] Sorting trace points... [1.258s] Computing alignments... [30.633s] Deallocating buffers... [0.015s] Loading trace points... [0.059s] Sorting trace points... [1.071s] Computing alignments... [30.585s] Deallocating buffers... [0.032s] Loading trace points... [0.085s] Sorting trace points... [1.06s] Computing alignments... [30.69s] Deallocating buffers... [0.016s] Loading trace points... [0.043s] Sorting trace points... [1.138s] Computing alignments... [30.301s] Deallocating buffers... [0.013s] Loading trace points... [0.061s] Sorting trace points... [1.093s] Computing alignments... [30.27s] Deallocating buffers... [0.013s] Loading trace points... [0.083s] Sorting trace points... [1.133s] Computing alignments... [30.021s] Deallocating buffers... [0.012s] Loading trace points... [0.226s] Sorting trace points... [1.183s] Computing alignments... [30.479s] Deallocating buffers... [0.013s] Loading trace points... [0.073s] Sorting trace points... [0.992s] Computing alignments... [30.223s] Deallocating buffers... [0.013s] Loading trace points... [0.064s] Sorting trace points... [1.195s] Computing alignments... [30.677s] Deallocating buffers... [0.016s] Loading trace points... [0.001s] Sorting trace points... [0.889s] Computing alignments... [31.798s] Deallocating buffers... [0.015s] Loading trace points... [0.057s] Sorting trace points... [1.281s] Computing alignments... [32.227s] Deallocating buffers... [0.017s] Loading trace points... [0.078s] Sorting trace points... [0.882s] Computing alignments... [31.77s] Deallocating buffers... [0.015s] Loading trace points... [0.051s] Sorting trace points... [1.231s] Computing alignments... [32.012s] Deallocating buffers... [0.014s] Loading trace points... [0.05s] Sorting trace points... [1.187s] Computing alignments... [31.86s] Deallocating buffers... [0.014s] Loading trace points... [0.055s] Sorting trace points... [1.229s] Computing alignments... [31.932s] Deallocating buffers... [0.013s] Loading trace points... [0s] Sorting trace points... [1.177s] Computing alignments... [35.043s] Deallocating buffers... [0.038s] Loading trace points... [0s] [526.008s] Deallocating reference... [0.1s] Loading reference sequences... [29.729s] Masking reference... [30.976s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.007s] Building reference histograms... [32.675s] Allocating buffers... [0s] Processing query block 1, reference block 2/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.391s] Building query seed array... [2.063s] Computing hash join... [6.826s] Masking low complexity seeds... [0.463s] Searching alignments... [72.463s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.842s] Building query seed array... [2.71s] Computing hash join... [6.108s] Masking low complexity seeds... [0.243s] Searching alignments... [46.704s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 1/2, index chunk 3/4. Building reference seed array... [14.192s] Building query seed array... [2.805s] Computing hash join... [5.795s] Masking low complexity seeds... [0.247s] Searching alignments... [40.973s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.424s] Building query seed array... [2.151s] Computing hash join... [5.72s] Masking low complexity seeds... [0.265s] Searching alignments... [36.286s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.337s] Building query seed array... [1.965s] Computing hash join... [5.838s] Masking low complexity seeds... [0.262s] Searching alignments... [36.944s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.891s] Building query seed array... [2.239s] Computing hash join... [5.678s] Masking low complexity seeds... [0.238s] Searching alignments... [29.471s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.624s] Building query seed array... [2.381s] Computing hash join... [5.696s] Masking low complexity seeds... [0.216s] Searching alignments... [33.869s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.88s] Building query seed array... [2.114s] Computing hash join... [5.854s] Masking low complexity seeds... [0.24s] Searching alignments... [28.475s] Deallocating memory... [0s] Deallocating buffers... [1.896s] Clearing query masking... [1.523s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [6.087s] Sorting trace points... [1.233s] Computing alignments... [30.379s] Deallocating buffers... [0.015s] Loading trace points... [0.061s] Sorting trace points... [1.124s] Computing alignments... [30.305s] Deallocating buffers... [0.013s] Loading trace points... [0.084s] Sorting trace points... [1.158s] Computing alignments... [30.612s] Deallocating buffers... [0.013s] Loading trace points... [0.001s] Sorting trace points... [1.123s] Computing alignments... [30.283s] Deallocating buffers... [0.02s] Loading trace points... [0.088s] Sorting trace points... [0.797s] Computing alignments... [30.256s] Deallocating buffers... [0.014s] Loading trace points... [0.325s] Sorting trace points... [0.889s] Computing alignments... [30.171s] Deallocating buffers... [0.019s] Loading trace points... [0.069s] Sorting trace points... [1.015s] Computing alignments... [30.396s] Deallocating buffers... [0.016s] Loading trace points... [0.07s] Sorting trace points... [1.165s] Computing alignments... [30.034s] Deallocating buffers... [0.016s] Loading trace points... [0.001s] Sorting trace points... [0.844s] Computing alignments... [30.629s] Deallocating buffers... [0.015s] Loading trace points... [0.099s] Sorting trace points... [1.188s] Computing alignments... [31.735s] Deallocating buffers... [0.013s] Loading trace points... [0.058s] Sorting trace points... [1.035s] Computing alignments... [32.087s] Deallocating buffers... [0.014s] Loading trace points... [0.046s] Sorting trace points... [1.174s] Computing alignments... [31.664s] Deallocating buffers... [0.017s] Loading trace points... [0.068s] Sorting trace points... [1.186s] Computing alignments... [31.68s] Deallocating buffers... [0.013s] Loading trace points... [0.051s] Sorting trace points... [0.917s] Computing alignments... [31.711s] Deallocating buffers... [0.015s] Loading trace points... [0.078s] Sorting trace points... [1.21s] Computing alignments... [31.697s] Deallocating buffers... [0.014s] Loading trace points... [0s] Sorting trace points... [1.204s] Computing alignments... [33.981s] Deallocating buffers... [0.043s] Loading trace points... [0s] [522.384s] Deallocating reference... [0.104s] Loading reference sequences... [31.649s] Masking reference... [31.973s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.007s] Building reference histograms... [32.256s] Allocating buffers... [0.001s] Processing query block 1, reference block 3/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.478s] Building query seed array... [2.07s] Computing hash join... [6.951s] Masking low complexity seeds... [0.571s] Searching alignments... [74.031s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.938s] Building query seed array... [2.918s] Computing hash join... [6.659s] Masking low complexity seeds... [0.232s] Searching alignments... [48.006s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.385s] Building query seed array... [2.676s] Computing hash join... [6.311s] Masking low complexity seeds... [0.24s] Searching alignments... [43.415s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.458s] Building query seed array... [2.133s] Computing hash join... [6.389s] Masking low complexity seeds... [0.257s] Searching alignments... [39.823s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.343s] Building query seed array... [2.135s] Computing hash join... [6.33s] Masking low complexity seeds... [0.226s] Searching alignments... [38.381s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.473s] Building query seed array... [2.439s] Computing hash join... [6.575s] Masking low complexity seeds... [0.231s] Searching alignments... [30.124s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.49s] Building query seed array... [2.467s] Computing hash join... [6.253s] Masking low complexity seeds... [0.232s] Searching alignments... [34.943s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.432s] Building query seed array... [1.976s] Computing hash join... [6.344s] Masking low complexity seeds... [0.228s] Searching alignments... [28.84s] Deallocating memory... [0s] Deallocating buffers... [1.554s] Clearing query masking... [1.632s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [6.191s] Sorting trace points... [1.229s] Computing alignments... [30.167s] Deallocating buffers... [0.015s] Loading trace points... [0.067s] Sorting trace points... [1.009s] Computing alignments... [30.148s] Deallocating buffers... [0.014s] Loading trace points... [0.092s] Sorting trace points... [1.19s] Computing alignments... [30.4s] Deallocating buffers... [0.016s] Loading trace points... [0.072s] Sorting trace points... [1.128s] Computing alignments... [30.087s] Deallocating buffers... [0.015s] Loading trace points... [0.068s] Sorting trace points... [1.062s] Computing alignments... [30.024s] Deallocating buffers... [0.013s] Loading trace points... [0.07s] Sorting trace points... [1.137s] Computing alignments... [29.759s] Deallocating buffers... [0.013s] Loading trace points... [0.051s] Sorting trace points... [1.065s] Computing alignments... [30.369s] Deallocating buffers... [0.016s] Loading trace points... [0.089s] Sorting trace points... [1.174s] Computing alignments... [29.967s] Deallocating buffers... [0.013s] Loading trace points... [0.058s] Sorting trace points... [1.084s] Computing alignments... [30.446s] Deallocating buffers... [0.013s] Loading trace points... [0s] Sorting trace points... [1.206s] Computing alignments... [31.545s] Deallocating buffers... [0.017s] Loading trace points... [0.075s] Sorting trace points... [1.127s] Computing alignments... [31.95s] Deallocating buffers... [0.014s] Loading trace points... [0.07s] Sorting trace points... [1.181s] Computing alignments... [31.486s] Deallocating buffers... [0.017s] Loading trace points... [0.084s] Sorting trace points... [1.254s] Computing alignments... [31.559s] Deallocating buffers... [0.013s] Loading trace points... [0.697s] Sorting trace points... [1.28s] Computing alignments... [31.568s] Deallocating buffers... [0.013s] Loading trace points... [0.051s] Sorting trace points... [0.863s] Computing alignments... [31.618s] Deallocating buffers... [0.015s] Loading trace points... [0s] Sorting trace points... [1.187s] Computing alignments... [33.925s] Deallocating buffers... [0.044s] Loading trace points... [0s] [521.449s] Deallocating reference... [0.066s] Loading reference sequences... [30.708s] Masking reference... [31.568s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.008s] Building reference histograms... [32.941s] Allocating buffers... [0s] Processing query block 1, reference block 4/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.342s] Building query seed array... [2.009s] Computing hash join... [6.796s] Masking low complexity seeds... [0.452s] Searching alignments... [74.721s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 1/2, index chunk 2/4. Building reference seed array... [13.166s] Building query seed array... [2.731s] Computing hash join... [6.97s] Masking low complexity seeds... [0.331s] Searching alignments... [45.741s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 1/2, index chunk 3/4. Building reference seed array... [14.101s] Building query seed array... [2.65s] Computing hash join... [6.481s] Masking low complexity seeds... [0.257s] Searching alignments... [42.185s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.79s] Building query seed array... [2.275s] Computing hash join... [6.731s] Masking low complexity seeds... [0.246s] Searching alignments... [37.501s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.471s] Building query seed array... [2.056s] Computing hash join... [6.602s] Masking low complexity seeds... [0.241s] Searching alignments... [37.195s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.476s] Building query seed array... [2.23s] Computing hash join... [6.704s] Masking low complexity seeds... [0.23s] Searching alignments... [29.772s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.636s] Building query seed array... [2.33s] Computing hash join... [6.192s] Masking low complexity seeds... [0.257s] Searching alignments... [33.055s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.837s] Building query seed array... [2.098s] Computing hash join... [6.294s] Masking low complexity seeds... [0.215s] Searching alignments... [28.954s] Deallocating memory... [0s] Deallocating buffers... [1.91s] Clearing query masking... [1.576s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [5.932s] Sorting trace points... [1.293s] Computing alignments... [30.215s] Deallocating buffers... [0.015s] Loading trace points... [0.067s] Sorting trace points... [1.244s] Computing alignments... [30.216s] Deallocating buffers... [0.152s] Loading trace points... [0.067s] Sorting trace points... [1.064s] Computing alignments... [30.32s] Deallocating buffers... [0.014s] Loading trace points... [0.053s] Sorting trace points... [1.118s] Computing alignments... [30.078s] Deallocating buffers... [0.017s] Loading trace points... [0.075s] Sorting trace points... [1.133s] Computing alignments... [29.921s] Deallocating buffers... [0.012s] Loading trace points... [0.066s] Sorting trace points... [0.967s] Computing alignments... [29.805s] Deallocating buffers... [0.013s] Loading trace points... [0.062s] Sorting trace points... [0.878s] Computing alignments... [30.163s] Deallocating buffers... [0.014s] Loading trace points... [0.08s] Sorting trace points... [1.154s] Computing alignments... [29.899s] Deallocating buffers... [0.016s] Loading trace points... [0.051s] Sorting trace points... [1.156s] Computing alignments... [30.491s] Deallocating buffers... [0.017s] Loading trace points... [0.001s] Sorting trace points... [1.205s] Computing alignments... [31.657s] Deallocating buffers... [0.014s] Loading trace points... [0.681s] Sorting trace points... [1.27s] Computing alignments... [31.991s] Deallocating buffers... [0.014s] Loading trace points... [0.057s] Sorting trace points... [0.986s] Computing alignments... [31.607s] Deallocating buffers... [0.016s] Loading trace points... [0.064s] Sorting trace points... [0.895s] Computing alignments... [31.584s] Deallocating buffers... [0.015s] Loading trace points... [0.063s] Sorting trace points... [1.225s] Computing alignments... [31.613s] Deallocating buffers... [0.014s] Loading trace points... [0.048s] Sorting trace points... [1.214s] Computing alignments... [31.73s] Deallocating buffers... [0.017s] Loading trace points... [0s] Sorting trace points... [1.2s] Computing alignments... [33.91s] Deallocating buffers... [0.042s] Loading trace points... [0s] [521.076s] Deallocating reference... [0.084s] Loading reference sequences... [30.717s] Masking reference... [31.867s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.008s] Building reference histograms... [32.786s] Allocating buffers... [0s] Processing query block 1, reference block 5/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.496s] Building query seed array... [2.184s] Computing hash join... [7.002s] Masking low complexity seeds... [0.452s] Searching alignments... [73.415s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.579s] Building query seed array... [2.625s] Computing hash join... [6.829s] Masking low complexity seeds... [0.291s] Searching alignments... [46.791s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.754s] Building query seed array... [2.662s] Computing hash join... [6.507s] Masking low complexity seeds... [0.244s] Searching alignments... [41.089s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.433s] Building query seed array... [2.228s] Computing hash join... [6.391s] Masking low complexity seeds... [0.265s] Searching alignments... [36.529s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.654s] Building query seed array... [1.947s] Computing hash join... [6.256s] Masking low complexity seeds... [0.23s] Searching alignments... [38.041s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.881s] Building query seed array... [2.291s] Computing hash join... [6.536s] Masking low complexity seeds... [0.254s] Searching alignments... [29.579s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.539s] Building query seed array... [2.367s] Computing hash join... [6.226s] Masking low complexity seeds... [0.211s] Searching alignments... [34.473s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.555s] Building query seed array... [2.079s] Computing hash join... [6.235s] Masking low complexity seeds... [0.214s] Searching alignments... [28.736s] Deallocating memory... [0s] Deallocating buffers... [1.699s] Clearing query masking... [1.578s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [6.169s] Sorting trace points... [1.239s] Computing alignments... [30.305s] Deallocating buffers... [0.012s] Loading trace points... [0.075s] Sorting trace points... [1.149s] Computing alignments... [30.196s] Deallocating buffers... [0.016s] Loading trace points... [0.068s] Sorting trace points... [1.185s] Computing alignments... [30.32s] Deallocating buffers... [0.013s] Loading trace points... [0.048s] Sorting trace points... [1.14s] Computing alignments... [29.946s] Deallocating buffers... [0.02s] Loading trace points... [0.088s] Sorting trace points... [0.852s] Computing alignments... [30.02s] Deallocating buffers... [0.014s] Loading trace points... [0.918s] Sorting trace points... [0.923s] Computing alignments... [29.854s] Deallocating buffers... [0.014s] Loading trace points... [0s] Sorting trace points... [1.162s] Computing alignments... [30.057s] Deallocating buffers... [0.013s] Loading trace points... [0.077s] Sorting trace points... [1.152s] Computing alignments... [29.781s] Deallocating buffers... [0.013s] Loading trace points... [0.057s] Sorting trace points... [1.178s] Computing alignments... [30.283s] Deallocating buffers... [0.016s] Loading trace points... [0.084s] Sorting trace points... [0.892s] Computing alignments... [31.358s] Deallocating buffers... [0.015s] Loading trace points... [0.053s] Sorting trace points... [1.215s] Computing alignments... [31.8s] Deallocating buffers... [0.014s] Loading trace points... [0.048s] Sorting trace points... [1.209s] Computing alignments... [31.456s] Deallocating buffers... [0.017s] Loading trace points... [0.05s] Sorting trace points... [1.193s] Computing alignments... [31.492s] Deallocating buffers... [0.013s] Loading trace points... [0.054s] Sorting trace points... [1.199s] Computing alignments... [31.537s] Deallocating buffers... [0.013s] Loading trace points... [0.054s] Sorting trace points... [1.084s] Computing alignments... [31.516s] Deallocating buffers... [0.016s] Loading trace points... [0s] Sorting trace points... [0.891s] Computing alignments... [33.795s] Deallocating buffers... [0.036s] Loading trace points... [0s] [519.725s] Deallocating reference... [0.071s] Loading reference sequences... [29.822s] Masking reference... [32.164s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.007s] Building reference histograms... [32.881s] Allocating buffers... [0.001s] Processing query block 1, reference block 6/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.561s] Building query seed array... [2.108s] Computing hash join... [6.965s] Masking low complexity seeds... [0.243s] Searching alignments... [72.042s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.796s] Building query seed array... [2.911s] Computing hash join... [6.635s] Masking low complexity seeds... [0.24s] Searching alignments... [48.078s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.845s] Building query seed array... [2.73s] Computing hash join... [6.486s] Masking low complexity seeds... [0.252s] Searching alignments... [41.281s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.022s] Building query seed array... [2.315s] Computing hash join... [6.566s] Masking low complexity seeds... [0.267s] Searching alignments... [37.766s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.153s] Building query seed array... [1.919s] Computing hash join... [6.185s] Masking low complexity seeds... [0.233s] Searching alignments... [36.545s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 2/2, index chunk 2/4. Building reference seed array... [13.273s] Building query seed array... [2.4s] Computing hash join... [6.196s] Masking low complexity seeds... [0.244s] Searching alignments... [30.509s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.649s] Building query seed array... [2.446s] Computing hash join... [6.136s] Masking low complexity seeds... [0.22s] Searching alignments... [32.534s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.359s] Building query seed array... [2.076s] Computing hash join... [6.863s] Masking low complexity seeds... [0.262s] Searching alignments... [27.549s] Deallocating memory... [0s] Deallocating buffers... [1.729s] Clearing query masking... [1.651s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [6.103s] Sorting trace points... [1.226s] Computing alignments... [29.959s] Deallocating buffers... [0.015s] Loading trace points... [0.058s] Sorting trace points... [1.144s] Computing alignments... [30.012s] Deallocating buffers... [0.013s] Loading trace points... [0.077s] Sorting trace points... [1.181s] Computing alignments... [30.15s] Deallocating buffers... [0.016s] Loading trace points... [0.093s] Sorting trace points... [1.159s] Computing alignments... [29.868s] Deallocating buffers... [0.019s] Loading trace points... [0.127s] Sorting trace points... [0.995s] Computing alignments... [29.862s] Deallocating buffers... [0.015s] Loading trace points... [0.06s] Sorting trace points... [1.131s] Computing alignments... [29.639s] Deallocating buffers... [0.013s] Loading trace points... [0.375s] Sorting trace points... [1.107s] Computing alignments... [29.984s] Deallocating buffers... [0.014s] Loading trace points... [0.074s] Sorting trace points... [1.141s] Computing alignments... [29.77s] Deallocating buffers... [0.016s] Loading trace points... [0.107s] Sorting trace points... [1.183s] Computing alignments... [30.26s] Deallocating buffers... [0.013s] Loading trace points... [0.084s] Sorting trace points... [1.211s] Computing alignments... [31.512s] Deallocating buffers... [0.013s] Loading trace points... [0.045s] Sorting trace points... [1.216s] Computing alignments... [31.886s] Deallocating buffers... [0.014s] Loading trace points... [0.041s] Sorting trace points... [1.175s] Computing alignments... [31.37s] Deallocating buffers... [0.014s] Loading trace points... [0.049s] Sorting trace points... [0.875s] Computing alignments... [31.475s] Deallocating buffers... [0.015s] Loading trace points... [0.045s] Sorting trace points... [1.18s] Computing alignments... [31.497s] Deallocating buffers... [0.014s] Loading trace points... [0.045s] Sorting trace points... [1.196s] Computing alignments... [31.516s] Deallocating buffers... [0.017s] Loading trace points... [0s] Sorting trace points... [1.225s] Computing alignments... [33.773s] Deallocating buffers... [0.027s] Loading trace points... [0s] [518.723s] Deallocating reference... [0.078s] Loading reference sequences... [29.138s] Masking reference... [32.154s] Initializing dictionary... [0.077s] Initializing temporary storage... [0.014s] Building reference histograms... [32.47s] Allocating buffers... [0s] Processing query block 1, reference block 7/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.359s] Building query seed array... [2.035s] Computing hash join... [6.977s] Masking low complexity seeds... [0.232s] Searching alignments... [74.57s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.863s] Building query seed array... [3.012s] Computing hash join... [6.636s] Masking low complexity seeds... [0.231s] Searching alignments... [47.057s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.677s] Building query seed array... [2.65s] Computing hash join... [6.415s] Masking low complexity seeds... [0.244s] Searching alignments... [41.584s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.599s] Building query seed array... [2.215s] Computing hash join... [6.532s] Masking low complexity seeds... [0.265s] Searching alignments... [36.896s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.516s] Building query seed array... [1.988s] Computing hash join... [6.129s] Masking low complexity seeds... [0.247s] Searching alignments... [37.385s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.669s] Building query seed array... [2.364s] Computing hash join... [6.328s] Masking low complexity seeds... [0.239s] Searching alignments... [29.725s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.576s] Building query seed array... [2.426s] Computing hash join... [6.388s] Masking low complexity seeds... [0.233s] Searching alignments... [33.646s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.12s] Building query seed array... [2.021s] Computing hash join... [6.464s] Masking low complexity seeds... [0.209s] Searching alignments... [29.042s] Deallocating memory... [0s] Deallocating buffers... [1.785s] Clearing query masking... [1.596s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [6.452s] Sorting trace points... [1.164s] Computing alignments... [30.392s] Deallocating buffers... [0.015s] Loading trace points... [0.879s] Sorting trace points... [0.958s] Computing alignments... [30.298s] Deallocating buffers... [0.014s] Loading trace points... [0.112s] Sorting trace points... [1.181s] Computing alignments... [30.457s] Deallocating buffers... [0.013s] Loading trace points... [0.048s] Sorting trace points... [1.137s] Computing alignments... [30.079s] Deallocating buffers... [0.013s] Loading trace points... [0.089s] Sorting trace points... [1.167s] Computing alignments... [29.986s] Deallocating buffers... [0.013s] Loading trace points... [0.098s] Sorting trace points... [1.14s] Computing alignments... [29.935s] Deallocating buffers... [0.016s] Loading trace points... [0.044s] Sorting trace points... [0.961s] Computing alignments... [30.381s] Deallocating buffers... [0.015s] Loading trace points... [0.089s] Sorting trace points... [0.828s] Computing alignments... [29.981s] Deallocating buffers... [0.014s] Loading trace points... [0.05s] Sorting trace points... [1.051s] Computing alignments... [30.624s] Deallocating buffers... [0.013s] Loading trace points... [0s] Sorting trace points... [1.219s] Computing alignments... [31.683s] Deallocating buffers... [0.013s] Loading trace points... [0.055s] Sorting trace points... [1.226s] Computing alignments... [32.521s] Deallocating buffers... [0.014s] Loading trace points... [0.065s] Sorting trace points... [0.977s] Computing alignments... [31.685s] Deallocating buffers... [0.016s] Loading trace points... [0.059s] Sorting trace points... [1.191s] Computing alignments... [31.763s] Deallocating buffers... [0.017s] Loading trace points... [0.069s] Sorting trace points... [1.221s] Computing alignments... [31.695s] Deallocating buffers... [0.013s] Loading trace points... [0.049s] Sorting trace points... [1.071s] Computing alignments... [31.739s] Deallocating buffers... [0.016s] Loading trace points... [0s] Sorting trace points... [0.972s] Computing alignments... [34.122s] Deallocating buffers... [0.038s] Loading trace points... [0s] [523.409s] Deallocating reference... [0.07s] Loading reference sequences... [29.285s] Masking reference... [30.922s] Initializing dictionary... [0.077s] Initializing temporary storage... [0.006s] Building reference histograms... [33.21s] Allocating buffers... [0s] Processing query block 1, reference block 8/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.006s] Building query seed array... [2.024s] Computing hash join... [7.052s] Masking low complexity seeds... [0.237s] Searching alignments... [72.063s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 1/2, index chunk 2/4. Building reference seed array... [13.147s] Building query seed array... [2.899s] Computing hash join... [6.779s] Masking low complexity seeds... [0.242s] Searching alignments... [48.002s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 1/2, index chunk 3/4. Building reference seed array... [14.042s] Building query seed array... [2.655s] Computing hash join... [6.526s] Masking low complexity seeds... [0.259s] Searching alignments... [42.73s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.918s] Building query seed array... [2.421s] Computing hash join... [6.581s] Masking low complexity seeds... [0.255s] Searching alignments... [37.929s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.261s] Building query seed array... [1.916s] Computing hash join... [6.415s] Masking low complexity seeds... [0.247s] Searching alignments... [37.219s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.659s] Building query seed array... [2.342s] Computing hash join... [6.358s] Masking low complexity seeds... [0.247s] Searching alignments... [29.789s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.799s] Building query seed array... [2.463s] Computing hash join... [6.252s] Masking low complexity seeds... [0.244s] Searching alignments... [35.317s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.696s] Building query seed array... [1.963s] Computing hash join... [6.204s] Masking low complexity seeds... [0.231s] Searching alignments... [29.129s] Deallocating memory... [0s] Deallocating buffers... [1.859s] Clearing query masking... [1.599s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [6.541s] Sorting trace points... [1.225s] Computing alignments... [30.396s] Deallocating buffers... [0.015s] Loading trace points... [0.074s] Sorting trace points... [1.274s] Computing alignments... [30.24s] Deallocating buffers... [0.139s] Loading trace points... [0.075s] Sorting trace points... [0.888s] Computing alignments... [30.482s] Deallocating buffers... [0.015s] Loading trace points... [0.056s] Sorting trace points... [0.935s] Computing alignments... [30.234s] Deallocating buffers... [0.021s] Loading trace points... [0.097s] Sorting trace points... [1.184s] Computing alignments... [30.003s] Deallocating buffers... [0.013s] Loading trace points... [0.065s] Sorting trace points... [1.142s] Computing alignments... [29.941s] Deallocating buffers... [0.012s] Loading trace points... [0.063s] Sorting trace points... [0.842s] Computing alignments... [30.374s] Deallocating buffers... [0.015s] Loading trace points... [0.096s] Sorting trace points... [1.137s] Computing alignments... [30.012s] Deallocating buffers... [0.016s] Loading trace points... [0.049s] Sorting trace points... [1.036s] Computing alignments... [30.51s] Deallocating buffers... [0.016s] Loading trace points... [0.001s] Sorting trace points... [1.194s] Computing alignments... [31.688s] Deallocating buffers... [0.014s] Loading trace points... [0.054s] Sorting trace points... [1.286s] Computing alignments... [32.078s] Deallocating buffers... [0.017s] Loading trace points... [0.057s] Sorting trace points... [1.3s] Computing alignments... [31.59s] Deallocating buffers... [0.017s] Loading trace points... [0.054s] Sorting trace points... [1.328s] Computing alignments... [31.807s] Deallocating buffers... [0.084s] Loading trace points... [0.069s] Sorting trace points... [1.208s] Computing alignments... [31.766s] Deallocating buffers... [0.017s] Loading trace points... [0.053s] Sorting trace points... [0.883s] Computing alignments... [31.752s] Deallocating buffers... [0.015s] Loading trace points... [0s] Sorting trace points... [0.877s] Computing alignments... [34.064s] Deallocating buffers... [0.039s] Loading trace points... [0s] [522.792s] Deallocating reference... [0.064s] Loading reference sequences... [29.769s] Masking reference... [32.156s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.006s] Building reference histograms... [32.312s] Allocating buffers... [0s] Processing query block 1, reference block 9/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.354s] Building query seed array... [2.042s] Computing hash join... [6.301s] Masking low complexity seeds... [0.235s] Searching alignments... [74.226s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 1/2, index chunk 2/4. Building reference seed array... [13.441s] Building query seed array... [2.966s] Computing hash join... [6.702s] Masking low complexity seeds... [0.263s] Searching alignments... [46.044s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 1/2, index chunk 3/4. Building reference seed array... [14.067s] Building query seed array... [2.764s] Computing hash join... [6.199s] Masking low complexity seeds... [0.25s] Searching alignments... [43.822s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.513s] Building query seed array... [2.133s] Computing hash join... [6.787s] Masking low complexity seeds... [0.241s] Searching alignments... [37.856s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.261s] Building query seed array... [2.025s] Computing hash join... [6.536s] Masking low complexity seeds... [0.225s] Searching alignments... [37.541s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.54s] Building query seed array... [2.338s] Computing hash join... [6.54s] Masking low complexity seeds... [0.235s] Searching alignments... [29.847s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 2/2, index chunk 3/4. Building reference seed array... [14.181s] Building query seed array... [3.003s] Computing hash join... [6.592s] Masking low complexity seeds... [0.238s] Searching alignments... [34.249s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.498s] Building query seed array... [2.068s] Computing hash join... [6.725s] Masking low complexity seeds... [0.224s] Searching alignments... [28.161s] Deallocating memory... [0s] Deallocating buffers... [2.006s] Clearing query masking... [1.511s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [6.288s] Sorting trace points... [1.258s] Computing alignments... [30.402s] Deallocating buffers... [0.014s] Loading trace points... [0.065s] Sorting trace points... [1.19s] Computing alignments... [30.336s] Deallocating buffers... [0.092s] Loading trace points... [0.068s] Sorting trace points... [1.18s] Computing alignments... [30.511s] Deallocating buffers... [0.016s] Loading trace points... [0.046s] Sorting trace points... [1.137s] Computing alignments... [30.143s] Deallocating buffers... [0.019s] Loading trace points... [0.079s] Sorting trace points... [1.172s] Computing alignments... [30.021s] Deallocating buffers... [0.013s] Loading trace points... [0.057s] Sorting trace points... [1.166s] Computing alignments... [29.881s] Deallocating buffers... [0.013s] Loading trace points... [0.377s] Sorting trace points... [1.022s] Computing alignments... [30.25s] Deallocating buffers... [0.015s] Loading trace points... [0.08s] Sorting trace points... [1.115s] Computing alignments... [29.956s] Deallocating buffers... [0.013s] Loading trace points... [0.057s] Sorting trace points... [0.885s] Computing alignments... [30.584s] Deallocating buffers... [0.015s] Loading trace points... [0.076s] Sorting trace points... [1.206s] Computing alignments... [31.512s] Deallocating buffers... [0.014s] Loading trace points... [0.054s] Sorting trace points... [1.256s] Computing alignments... [32.035s] Deallocating buffers... [0.014s] Loading trace points... [0.051s] Sorting trace points... [1.216s] Computing alignments... [31.542s] Deallocating buffers... [0.013s] Loading trace points... [0.057s] Sorting trace points... [1.188s] Computing alignments... [31.578s] Deallocating buffers... [0.013s] Loading trace points... [0.069s] Sorting trace points... [1.235s] Computing alignments... [31.56s] Deallocating buffers... [0.014s] Loading trace points... [0.046s] Sorting trace points... [1.217s] Computing alignments... [31.631s] Deallocating buffers... [0.017s] Loading trace points... [0s] Sorting trace points... [1.216s] Computing alignments... [34.061s] Deallocating buffers... [0.045s] Loading trace points... [0s] [522.627s] Deallocating reference... [0.079s] Loading reference sequences... [29.981s] Masking reference... [32.145s] Initializing dictionary... [0.077s] Initializing temporary storage... [0.007s] Building reference histograms... [32.45s] Allocating buffers... [0s] Processing query block 1, reference block 10/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.174s] Building query seed array... [2.085s] Computing hash join... [7.031s] Masking low complexity seeds... [0.224s] Searching alignments... [74.117s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.834s] Building query seed array... [3.012s] Computing hash join... [6.322s] Masking low complexity seeds... [0.26s] Searching alignments... [47.934s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.883s] Building query seed array... [2.726s] Computing hash join... [6.835s] Masking low complexity seeds... [0.245s] Searching alignments... [41.385s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.145s] Building query seed array... [2.203s] Computing hash join... [6.981s] Masking low complexity seeds... [0.23s] Searching alignments... [37.383s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.484s] Building query seed array... [2.102s] Computing hash join... [6.709s] Masking low complexity seeds... [0.247s] Searching alignments... [38.147s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.371s] Building query seed array... [2.327s] Computing hash join... [6.293s] Masking low complexity seeds... [0.215s] Searching alignments... [30.091s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.466s] Building query seed array... [2.419s] Computing hash join... [6.953s] Masking low complexity seeds... [0.274s] Searching alignments... [33.746s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.824s] Building query seed array... [2.008s] Computing hash join... [6.628s] Masking low complexity seeds... [0.29s] Searching alignments... [30.538s] Deallocating memory... [0s] Deallocating buffers... [1.818s] Clearing query masking... [1.495s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [6.535s] Sorting trace points... [1.222s] Computing alignments... [30.135s] Deallocating buffers... [0.015s] Loading trace points... [0.059s] Sorting trace points... [1.145s] Computing alignments... [30.051s] Deallocating buffers... [0.013s] Loading trace points... [0.097s] Sorting trace points... [1.173s] Computing alignments... [30.341s] Deallocating buffers... [0.013s] Loading trace points... [0.049s] Sorting trace points... [1.105s] Computing alignments... [29.915s] Deallocating buffers... [0.015s] Loading trace points... [0.065s] Sorting trace points... [0.944s] Computing alignments... [29.95s] Deallocating buffers... [0.015s] Loading trace points... [0.07s] Sorting trace points... [1.141s] Computing alignments... [29.738s] Deallocating buffers... [0.016s] Loading trace points... [0s] Sorting trace points... [1.133s] Computing alignments... [30.125s] Deallocating buffers... [0.016s] Loading trace points... [0.092s] Sorting trace points... [1.093s] Computing alignments... [29.836s] Deallocating buffers... [0.016s] Loading trace points... [0.045s] Sorting trace points... [1.149s] Computing alignments... [30.424s] Deallocating buffers... [0.013s] Loading trace points... [0.103s] Sorting trace points... [1.206s] Computing alignments... [31.417s] Deallocating buffers... [0.014s] Loading trace points... [0.058s] Sorting trace points... [1.137s] Computing alignments... [31.876s] Deallocating buffers... [0.017s] Loading trace points... [0.048s] Sorting trace points... [1.225s] Computing alignments... [31.497s] Deallocating buffers... [0.017s] Loading trace points... [0.051s] Sorting trace points... [1.203s] Computing alignments... [31.517s] Deallocating buffers... [0.017s] Loading trace points... [0.059s] Sorting trace points... [1.014s] Computing alignments... [31.461s] Deallocating buffers... [0.016s] Loading trace points... [0.435s] Sorting trace points... [1.251s] Computing alignments... [31.517s] Deallocating buffers... [0.014s] Loading trace points... [0s] Sorting trace points... [1.197s] Computing alignments... [33.603s] Deallocating buffers... [0.046s] Loading trace points... [0s] [520.031s] Deallocating reference... [0.068s] Loading reference sequences... [29.489s] Masking reference... [32.134s] Initializing dictionary... [0.077s] Initializing temporary storage... [0.006s] Building reference histograms... [32.446s] Allocating buffers... [0s] Processing query block 1, reference block 11/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.358s] Building query seed array... [2.119s] Computing hash join... [7.044s] Masking low complexity seeds... [0.227s] Searching alignments... [70.841s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.834s] Building query seed array... [2.976s] Computing hash join... [6.629s] Masking low complexity seeds... [0.227s] Searching alignments... [47.129s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 1/2, index chunk 3/4. Building reference seed array... [14.066s] Building query seed array... [2.688s] Computing hash join... [6.501s] Masking low complexity seeds... [0.289s] Searching alignments... [42.126s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.938s] Building query seed array... [2.369s] Computing hash join... [6.536s] Masking low complexity seeds... [0.255s] Searching alignments... [37.015s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.2s] Building query seed array... [2.11s] Computing hash join... [6.472s] Masking low complexity seeds... [0.256s] Searching alignments... [37.034s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 2/2, index chunk 2/4. Building reference seed array... [13.236s] Building query seed array... [2.352s] Computing hash join... [6.447s] Masking low complexity seeds... [0.245s] Searching alignments... [30.023s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.591s] Building query seed array... [2.457s] Computing hash join... [6.342s] Masking low complexity seeds... [0.241s] Searching alignments... [35.163s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.357s] Building query seed array... [2.049s] Computing hash join... [6.239s] Masking low complexity seeds... [0.218s] Searching alignments... [28.487s] Deallocating memory... [0s] Deallocating buffers... [2.058s] Clearing query masking... [1.62s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [6.413s] Sorting trace points... [1.266s] Computing alignments... [30.072s] Deallocating buffers... [0.015s] Loading trace points... [0.07s] Sorting trace points... [1.218s] Computing alignments... [29.945s] Deallocating buffers... [0.118s] Loading trace points... [0.082s] Sorting trace points... [1.145s] Computing alignments... [30.287s] Deallocating buffers... [0.013s] Loading trace points... [0.09s] Sorting trace points... [1.124s] Computing alignments... [29.974s] Deallocating buffers... [0.021s] Loading trace points... [0.112s] Sorting trace points... [1.118s] Computing alignments... [29.821s] Deallocating buffers... [0.013s] Loading trace points... [0.074s] Sorting trace points... [1.145s] Computing alignments... [29.861s] Deallocating buffers... [0.013s] Loading trace points... [0.111s] Sorting trace points... [1.086s] Computing alignments... [30.119s] Deallocating buffers... [0.013s] Loading trace points... [0.076s] Sorting trace points... [1.154s] Computing alignments... [29.789s] Deallocating buffers... [0.016s] Loading trace points... [0.086s] Sorting trace points... [1.141s] Computing alignments... [30.371s] Deallocating buffers... [0.013s] Loading trace points... [0.076s] Sorting trace points... [1.223s] Computing alignments... [31.581s] Deallocating buffers... [0.013s] Loading trace points... [0.053s] Sorting trace points... [1.206s] Computing alignments... [31.825s] Deallocating buffers... [0.014s] Loading trace points... [0.058s] Sorting trace points... [1.191s] Computing alignments... [31.472s] Deallocating buffers... [0.013s] Loading trace points... [0.046s] Sorting trace points... [1.217s] Computing alignments... [31.533s] Deallocating buffers... [0.017s] Loading trace points... [0.133s] Sorting trace points... [0.946s] Computing alignments... [31.598s] Deallocating buffers... [0.014s] Loading trace points... [0.058s] Sorting trace points... [0.978s] Computing alignments... [31.621s] Deallocating buffers... [0.014s] Loading trace points... [0s] Sorting trace points... [0.888s] Computing alignments... [34.123s] Deallocating buffers... [0.04s] Loading trace points... [0s] [520.177s] Deallocating reference... [0.075s] Loading reference sequences... [32.39s] Masking reference... [31.524s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.007s] Building reference histograms... [32.034s] Allocating buffers... [0s] Processing query block 1, reference block 12/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.08s] Building query seed array... [2.031s] Computing hash join... [6.626s] Masking low complexity seeds... [0.247s] Searching alignments... [74.328s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 1/2, index chunk 2/4. Building reference seed array... [13.486s] Building query seed array... [3.123s] Computing hash join... [6.473s] Masking low complexity seeds... [0.261s] Searching alignments... [46.661s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.943s] Building query seed array... [2.586s] Computing hash join... [7.025s] Masking low complexity seeds... [0.242s] Searching alignments... [42.111s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.453s] Building query seed array... [2.209s] Computing hash join... [6.612s] Masking low complexity seeds... [0.231s] Searching alignments... [37.844s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.912s] Building query seed array... [2.142s] Computing hash join... [6.83s] Masking low complexity seeds... [0.229s] Searching alignments... [37.341s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 2/2, index chunk 2/4. Building reference seed array... [13.031s] Building query seed array... [2.341s] Computing hash join... [6.395s] Masking low complexity seeds... [0.226s] Searching alignments... [29.858s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.58s] Building query seed array... [2.33s] Computing hash join... [6.752s] Masking low complexity seeds... [0.283s] Searching alignments... [33.542s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.815s] Building query seed array... [2.04s] Computing hash join... [6.656s] Masking low complexity seeds... [0.267s] Searching alignments... [28.971s] Deallocating memory... [0s] Deallocating buffers... [1.979s] Clearing query masking... [1.592s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [6.711s] Sorting trace points... [1.185s] Computing alignments... [30.103s] Deallocating buffers... [0.016s] Loading trace points... [0.077s] Sorting trace points... [0.829s] Computing alignments... [30.138s] Deallocating buffers... [0.014s] Loading trace points... [0.075s] Sorting trace points... [0.834s] Computing alignments... [30.451s] Deallocating buffers... [0.014s] Loading trace points... [0.05s] Sorting trace points... [1.13s] Computing alignments... [30.08s] Deallocating buffers... [0.02s] Loading trace points... [0.076s] Sorting trace points... [1.166s] Computing alignments... [29.98s] Deallocating buffers... [0.013s] Loading trace points... [0.073s] Sorting trace points... [0.898s] Computing alignments... [29.764s] Deallocating buffers... [0.014s] Loading trace points... [0.001s] Sorting trace points... [1.182s] Computing alignments... [30.202s] Deallocating buffers... [0.013s] Loading trace points... [0.088s] Sorting trace points... [1.187s] Computing alignments... [29.84s] Deallocating buffers... [0.014s] Loading trace points... [0.454s] Sorting trace points... [1.211s] Computing alignments... [30.374s] Deallocating buffers... [0.016s] Loading trace points... [0.09s] Sorting trace points... [1.129s] Computing alignments... [31.584s] Deallocating buffers... [0.016s] Loading trace points... [0.061s] Sorting trace points... [0.902s] Computing alignments... [31.943s] Deallocating buffers... [0.016s] Loading trace points... [0.06s] Sorting trace points... [1.213s] Computing alignments... [31.564s] Deallocating buffers... [0.017s] Loading trace points... [0.066s] Sorting trace points... [1.069s] Computing alignments... [31.68s] Deallocating buffers... [0.014s] Loading trace points... [0.067s] Sorting trace points... [0.924s] Computing alignments... [31.718s] Deallocating buffers... [0.015s] Loading trace points... [0.074s] Sorting trace points... [1.264s] Computing alignments... [31.68s] Deallocating buffers... [0.016s] Loading trace points... [0s] Sorting trace points... [1.22s] Computing alignments... [34.136s] Deallocating buffers... [0.051s] Loading trace points... [0s] [521.129s] Deallocating reference... [0.085s] Loading reference sequences... [34.008s] Masking reference... [31.214s] Initializing dictionary... [0.077s] Initializing temporary storage... [0.007s] Building reference histograms... [32.657s] Allocating buffers... [0s] Processing query block 1, reference block 13/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.503s] Building query seed array... [2.043s] Computing hash join... [7.297s] Masking low complexity seeds... [0.235s] Searching alignments... [75.06s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.569s] Building query seed array... [3.137s] Computing hash join... [7.025s] Masking low complexity seeds... [0.235s] Searching alignments... [46.282s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 1/2, index chunk 3/4. Building reference seed array... [14.682s] Building query seed array... [2.822s] Computing hash join... [6.419s] Masking low complexity seeds... [0.269s] Searching alignments... [41.277s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.219s] Building query seed array... [2.284s] Computing hash join... [6.594s] Masking low complexity seeds... [0.292s] Searching alignments... [37.179s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.171s] Building query seed array... [2.07s] Computing hash join... [6.24s] Masking low complexity seeds... [0.247s] Searching alignments... [37.063s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 2/2, index chunk 2/4. Building reference seed array... [13.014s] Building query seed array... [2.375s] Computing hash join... [6.428s] Masking low complexity seeds... [0.237s] Searching alignments... [29.866s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.819s] Building query seed array... [2.332s] Computing hash join... [6.264s] Masking low complexity seeds... [0.247s] Searching alignments... [33.49s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.401s] Building query seed array... [2.087s] Computing hash join... [6.703s] Masking low complexity seeds... [0.228s] Searching alignments... [29.89s] Deallocating memory... [0s] Deallocating buffers... [2.038s] Clearing query masking... [1.601s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [6.189s] Sorting trace points... [1.216s] Computing alignments... [30.228s] Deallocating buffers... [0.013s] Loading trace points... [0.107s] Sorting trace points... [1.158s] Computing alignments... [30.15s] Deallocating buffers... [0.013s] Loading trace points... [0.085s] Sorting trace points... [1.036s] Computing alignments... [30.462s] Deallocating buffers... [0.015s] Loading trace points... [0.002s] Sorting trace points... [0.966s] Computing alignments... [30.04s] Deallocating buffers... [0.016s] Loading trace points... [0.093s] Sorting trace points... [1.052s] Computing alignments... [30.097s] Deallocating buffers... [0.013s] Loading trace points... [0.067s] Sorting trace points... [0.837s] Computing alignments... [30.003s] Deallocating buffers... [0.014s] Loading trace points... [0.08s] Sorting trace points... [1.134s] Computing alignments... [30.206s] Deallocating buffers... [0.013s] Loading trace points... [0.087s] Sorting trace points... [1.154s] Computing alignments... [29.924s] Deallocating buffers... [0.016s] Loading trace points... [0.001s] Sorting trace points... [0.824s] Computing alignments... [30.87s] Deallocating buffers... [0.014s] Loading trace points... [0.11s] Sorting trace points... [1.081s] Computing alignments... [31.462s] Deallocating buffers... [0.016s] Loading trace points... [0.049s] Sorting trace points... [1.138s] Computing alignments... [32.006s] Deallocating buffers... [0.015s] Loading trace points... [0.049s] Sorting trace points... [1.241s] Computing alignments... [31.431s] Deallocating buffers... [0.013s] Loading trace points... [0.053s] Sorting trace points... [0.923s] Computing alignments... [31.632s] Deallocating buffers... [0.015s] Loading trace points... [0.048s] Sorting trace points... [1.018s] Computing alignments... [31.602s] Deallocating buffers... [0.016s] Loading trace points... [0.065s] Sorting trace points... [1.116s] Computing alignments... [31.572s] Deallocating buffers... [0.016s] Loading trace points... [0s] Sorting trace points... [1.204s] Computing alignments... [33.963s] Deallocating buffers... [0.045s] Loading trace points... [0s] [520.378s] Deallocating reference... [0.079s] Loading reference sequences... [26.436s] Masking reference... [25.703s] Initializing dictionary... [0.062s] Initializing temporary storage... [0.006s] Building reference histograms... [26.177s] Allocating buffers... [0s] Processing query block 1, reference block 14/14, shape 1/2, index chunk 1/4. Building reference seed array... [8.527s] Building query seed array... [2.03s] Computing hash join... [4.676s] Masking low complexity seeds... [0.228s] Searching alignments... [60.447s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 1/2, index chunk 2/4. Building reference seed array... [10.7s] Building query seed array... [2.829s] Computing hash join... [4.951s] Masking low complexity seeds... [0.218s] Searching alignments... [38.599s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 1/2, index chunk 3/4. Building reference seed array... [11.713s] Building query seed array... [2.577s] Computing hash join... [4.746s] Masking low complexity seeds... [0.226s] Searching alignments... [34.074s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 1/2, index chunk 4/4. Building reference seed array... [8.621s] Building query seed array... [2.327s] Computing hash join... [4.836s] Masking low complexity seeds... [0.229s] Searching alignments... [31.926s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 2/2, index chunk 1/4. Building reference seed array... [8.404s] Building query seed array... [1.946s] Computing hash join... [4.731s] Masking low complexity seeds... [0.211s] Searching alignments... [30.199s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 2/2, index chunk 2/4. Building reference seed array... [10.169s] Building query seed array... [2.336s] Computing hash join... [4.912s] Masking low complexity seeds... [0.229s] Searching alignments... [24.706s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 2/2, index chunk 3/4. Building reference seed array... [11.229s] Building query seed array... [2.373s] Computing hash join... [4.785s] Masking low complexity seeds... [0.215s] Searching alignments... [27.297s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 2/2, index chunk 4/4. Building reference seed array... [8.676s] Building query seed array... [2.021s] Computing hash join... [4.664s] Masking low complexity seeds... [0.209s] Searching alignments... [24.828s] Deallocating memory... [0s] Deallocating buffers... [1.232s] Clearing query masking... [1.519s] Opening temporary output file... [0.031s] Computing alignments... Loading trace points... [10.341s] Sorting trace points... [2.045s] Computing alignments... [48.067s] Deallocating buffers... [0.025s] Loading trace points... [0.17s] Sorting trace points... [2.044s] Computing alignments... [48.002s] Deallocating buffers... [0.104s] Loading trace points... [0.117s] Sorting trace points... [1.715s] Computing alignments... [47.575s] Deallocating buffers... [0.021s] Loading trace points... [0.116s] Sorting trace points... [1.92s] Computing alignments... [47.855s] Deallocating buffers... [0.02s] Loading trace points... [0.103s] Sorting trace points... [1.998s] Computing alignments... [49.334s] Deallocating buffers... [0.026s] Loading trace points... [0.199s] Sorting trace points... [1.914s] Computing alignments... [50.54s] Deallocating buffers... [0.197s] Loading trace points... [0.162s] Sorting trace points... [2.049s] Computing alignments... [50.223s] Deallocating buffers... [0.022s] Loading trace points... [0s] Sorting trace points... [1.668s] Computing alignments... [52.411s] Deallocating buffers... [0.043s] Loading trace points... [0s] [421.262s] Deallocating reference... [0.08s] Loading reference sequences... [0.072s] Deallocating buffers... [0s] Joining output blocks... Joining output blocks... [2110.69s] [2110.69s] Deallocating queries... [0.069s] Loading query sequences... [0s] Closing the input file... [0s] Closing the output file... Loading dictionary... [4.404s] [5.992s] Closing the database... [0s] Cleaning up... [0s] Total time = 17673.5s Reported 2387210963 pairwise alignments, 2387210963 HSPs. 13107372 queries aligned. DIAMOND BLASTx on /gscratch/srlab/sam/data/P_verrucosa/RNAseq/E8_R1.fastp-trim.20230215.fq.gz complete: E8_R1.blastx.meganized.daa Now MEGANizing E8_R1.blastx.meganized.daa Version MEGAN Community Edition (version 6.22.0, built 19 Feb 2022) Author(s) Daniel H. Huson Copyright (C) 2022 Daniel H. Huson. This program comes with ABSOLUTELY NO WARRANTY. Java version: 17.0.2 Functional classifications to use: EC, EGGNOG, GTDB, INTERPRO2GO, SEED Loading ncbi.map: 2,396,736 Loading ncbi.tre: 2,396,740 Loading ec.map: 8,200 Loading ec.tre: 8,204 Loading eggnog.map: 30,875 Loading eggnog.tre: 30,986 Loading gtdb.map: 240,103 Loading gtdb.tre: 240,107 Loading interpro2go.map: 14,242 Loading interpro2go.tre: 28,907 Loading seed.map: 961 Loading seed.tre: 962 Meganizing: E8_R1.blastx.meganized.daa Meganizing init Annotating DAA file using FAST mode (accession database and first accession per line) Annotating references 10% 20% 30% 40% 50% 60% 70% 80% 100% (655.7s) Writing 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (1.7s) Binning reads Initializing... Initializing binning... Using 'Naive LCA' algorithm for binning: Taxonomy Using Best-Hit algorithm for binning: SEED Using Best-Hit algorithm for binning: EGGNOG Using 'Naive LCA' algorithm for binning: GTDB Using Best-Hit algorithm for binning: EC Using Best-Hit algorithm for binning: INTERPRO2GO Binning reads... Binning reads Analyzing alignments 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (4,529.8s) Total reads: 13,107,372 With hits: 13,107,372 Alignments: 2,374,520,290 Assig. Taxonomy: 11,545,250 Assig. SEED: 128,593 Assig. EGGNOG: 78,115 Assig. GTDB: 446,570 Assig. EC: 1,977,623 Assig. INTERPRO2GO: 1,237,813 MinSupport set to: 6553 Binning reads Applying min-support & disabled filter to Taxonomy... 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (0.3s) Min-supp. changes: 4,457 Binning reads Applying min-support & disabled filter to GTDB... 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (12.6s) Min-supp. changes: 3,754 Binning reads Writing classification tables 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (38.2s) Binning reads Syncing 100% (0.3s) Class. Taxonomy: 89 Class. SEED: 532 Class. EGGNOG: 1,884 Class. GTDB: 23 Class. EC: 2,490 Class. INTERPRO2GO: 8,038 Total time: 5,247s Peak memory: 36.1 of 195.3G MEGANization of E8_R1.blastx.meganized.daa completed. Generating MD5 checksum for /gscratch/srlab/sam/data/P_verrucosa/RNAseq/E8_R2.fastp-trim.20230215.fq.gz... 0074e07e25595938cab0ebe87e29b938 /gscratch/srlab/sam/data/P_verrucosa/RNAseq/E8_R2.fastp-trim.20230215.fq.gz Running DIAMOND BLASTx on /gscratch/srlab/sam/data/P_verrucosa/RNAseq/E8_R2.fastp-trim.20230215.fq.gz. diamond v2.1.1.155 (C) Max Planck Society for the Advancement of Science Documentation, support and updates available at http://www.diamondsearch.org Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021) #CPU threads: 40 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: Percentage range of top alignment score to report hits: 5 Opening the database... [0.372s] Database: /gscratch/srlab/blastdbs/20230215-ncbi-nr/20230215-ncbi-nr.dmnd (type: Diamond database, sequences: 526308523, letters: 207134680681) Block size = 15000000000 Opening the input file... [0.797s] Opening the output file... [0s] Loading query sequences... [73.903s] Masking queries... [18.37s] Algorithm: Double-indexed Building query histograms... [20.741s] Loading reference sequences... [30.457s] Masking reference... [31.989s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.008s] Building reference histograms... [32.226s] Allocating buffers... [0s] Processing query block 1, reference block 1/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.451s] Building query seed array... [2.048s] Computing hash join... [6.44s] Masking low complexity seeds... [0.273s] Searching alignments... [74.454s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 1/2, index chunk 2/4. Building reference seed array... [13.585s] Building query seed array... [2.952s] Computing hash join... [6.147s] Masking low complexity seeds... [0.276s] Searching alignments... [48.166s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.858s] Building query seed array... [2.677s] Computing hash join... [5.829s] Masking low complexity seeds... [0.295s] Searching alignments... [42.998s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.45s] Building query seed array... [2.198s] Computing hash join... [6.108s] Masking low complexity seeds... [0.276s] Searching alignments... [38.024s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.825s] Building query seed array... [2.066s] Computing hash join... [5.765s] Masking low complexity seeds... [0.283s] Searching alignments... [41.514s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 2/2, index chunk 2/4. Building reference seed array... [13.037s] Building query seed array... [2.34s] Computing hash join... [5.902s] Masking low complexity seeds... [0.248s] Searching alignments... [32.27s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.897s] Building query seed array... [2.63s] Computing hash join... [6.086s] Masking low complexity seeds... [0.268s] Searching alignments... [35.539s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.388s] Building query seed array... [2.075s] Computing hash join... [5.787s] Masking low complexity seeds... [0.298s] Searching alignments... [28.834s] Deallocating memory... [0s] Deallocating buffers... [1.707s] Clearing query masking... [1.614s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [6.2s] Sorting trace points... [1.238s] Computing alignments... [30.418s] Deallocating buffers... [0.015s] Loading trace points... [0.061s] Sorting trace points... [0.905s] Computing alignments... [30.708s] Deallocating buffers... [0.021s] Loading trace points... [0.064s] Sorting trace points... [1.215s] Computing alignments... [30.355s] Deallocating buffers... [0.016s] Loading trace points... [0.076s] Sorting trace points... [0.922s] Computing alignments... [29.613s] Deallocating buffers... [0.013s] Loading trace points... [0.066s] Sorting trace points... [1.148s] Computing alignments... [29.902s] Deallocating buffers... [0.012s] Loading trace points... [0.062s] Sorting trace points... [0.838s] Computing alignments... [29.751s] Deallocating buffers... [0.015s] Loading trace points... [0.113s] Sorting trace points... [1.177s] Computing alignments... [30.316s] Deallocating buffers... [0.013s] Loading trace points... [0.062s] Sorting trace points... [1.123s] Computing alignments... [29.878s] Deallocating buffers... [0.016s] Loading trace points... [0.065s] Sorting trace points... [1.036s] Computing alignments... [30.745s] Deallocating buffers... [0.015s] Loading trace points... [0.066s] Sorting trace points... [1.243s] Computing alignments... [32.412s] Deallocating buffers... [0.017s] Loading trace points... [0.059s] Sorting trace points... [1.28s] Computing alignments... [32.787s] Deallocating buffers... [0.018s] Loading trace points... [0.063s] Sorting trace points... [0.984s] Computing alignments... [32.412s] Deallocating buffers... [0.015s] Loading trace points... [0.054s] Sorting trace points... [1.243s] Computing alignments... [32.564s] Deallocating buffers... [0.015s] Loading trace points... [0.052s] Sorting trace points... [1.152s] Computing alignments... [33.007s] Deallocating buffers... [0.017s] Loading trace points... [0.066s] Sorting trace points... [1.031s] Computing alignments... [32.471s] Deallocating buffers... [0.016s] Loading trace points... [0s] Sorting trace points... [1.231s] Computing alignments... [35.254s] Deallocating buffers... [0.041s] Loading trace points... [0s] [527.981s] Deallocating reference... [0.071s] Loading reference sequences... [32.142s] Masking reference... [31.642s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.009s] Building reference histograms... [31.711s] Allocating buffers... [0s] Processing query block 1, reference block 2/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.034s] Building query seed array... [2.089s] Computing hash join... [7.02s] Masking low complexity seeds... [0.464s] Searching alignments... [72.781s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.808s] Building query seed array... [2.839s] Computing hash join... [6.497s] Masking low complexity seeds... [0.272s] Searching alignments... [48.093s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 1/2, index chunk 3/4. Building reference seed array... [14.039s] Building query seed array... [2.72s] Computing hash join... [6.698s] Masking low complexity seeds... [0.268s] Searching alignments... [43.353s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.173s] Building query seed array... [2.285s] Computing hash join... [6.64s] Masking low complexity seeds... [0.279s] Searching alignments... [38.206s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.04s] Building query seed array... [1.963s] Computing hash join... [6.666s] Masking low complexity seeds... [0.271s] Searching alignments... [40.556s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.618s] Building query seed array... [2.368s] Computing hash join... [6.509s] Masking low complexity seeds... [0.264s] Searching alignments... [31.182s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.476s] Building query seed array... [2.503s] Computing hash join... [6.387s] Masking low complexity seeds... [0.26s] Searching alignments... [33.492s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.301s] Building query seed array... [2.011s] Computing hash join... [6.365s] Masking low complexity seeds... [0.237s] Searching alignments... [29.722s] Deallocating memory... [0s] Deallocating buffers... [1.419s] Clearing query masking... [1.647s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [6.099s] Sorting trace points... [1.221s] Computing alignments... [30.25s] Deallocating buffers... [0.016s] Loading trace points... [0.076s] Sorting trace points... [0.864s] Computing alignments... [30.536s] Deallocating buffers... [0.021s] Loading trace points... [0.054s] Sorting trace points... [1.22s] Computing alignments... [30.403s] Deallocating buffers... [0.013s] Loading trace points... [0.064s] Sorting trace points... [1.097s] Computing alignments... [29.61s] Deallocating buffers... [0.016s] Loading trace points... [0.062s] Sorting trace points... [1.141s] Computing alignments... [29.932s] Deallocating buffers... [0.016s] Loading trace points... [0.079s] Sorting trace points... [1.158s] Computing alignments... [29.699s] Deallocating buffers... [0.013s] Loading trace points... [0.068s] Sorting trace points... [1.109s] Computing alignments... [30.197s] Deallocating buffers... [0.015s] Loading trace points... [0.089s] Sorting trace points... [1.101s] Computing alignments... [29.859s] Deallocating buffers... [0.016s] Loading trace points... [0.048s] Sorting trace points... [1.147s] Computing alignments... [30.618s] Deallocating buffers... [0.016s] Loading trace points... [0.099s] Sorting trace points... [1.232s] Computing alignments... [32.218s] Deallocating buffers... [0.017s] Loading trace points... [0.002s] Sorting trace points... [1.266s] Computing alignments... [32.65s] Deallocating buffers... [0.014s] Loading trace points... [0.051s] Sorting trace points... [1.321s] Computing alignments... [32.188s] Deallocating buffers... [0.017s] Loading trace points... [0.078s] Sorting trace points... [1.293s] Computing alignments... [32.347s] Deallocating buffers... [0.014s] Loading trace points... [0.255s] Sorting trace points... [0.979s] Computing alignments... [32.298s] Deallocating buffers... [0.015s] Loading trace points... [0.08s] Sorting trace points... [1.271s] Computing alignments... [32.278s] Deallocating buffers... [0.017s] Loading trace points... [0s] Sorting trace points... [1.221s] Computing alignments... [35.035s] Deallocating buffers... [0.053s] Loading trace points... [0s] [526.578s] Deallocating reference... [0.092s] Loading reference sequences... [29.998s] Masking reference... slurmstepd: error: *** JOB 4501424 ON n2334 CANCELLED AT 2023-03-13T15:19:18 DUE TO TIME LIMIT ***