Generating MD5 checksum for /gscratch/srlab/sam/data/P_verrucosa/RNAseq/E10_R1.fastp-trim.20230215.fq.gz... 6177d40dceb78a6b0988e282e714ca07 /gscratch/srlab/sam/data/P_verrucosa/RNAseq/E10_R1.fastp-trim.20230215.fq.gz Running DIAMOND BLASTx on /gscratch/srlab/sam/data/P_verrucosa/RNAseq/E10_R1.fastp-trim.20230215.fq.gz. diamond v2.1.1.155 (C) Max Planck Society for the Advancement of Science Documentation, support and updates available at http://www.diamondsearch.org Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021) #CPU threads: 40 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: Percentage range of top alignment score to report hits: 5 Opening the database... [0.326s] Database: /gscratch/srlab/blastdbs/20230215-ncbi-nr/20230215-ncbi-nr.dmnd (type: Diamond database, sequences: 526308523, letters: 207134680681) Block size = 15000000000 Opening the input file... [0.674s] Opening the output file... [1.084s] Loading query sequences... [88.374s] Masking queries... [22.493s] Algorithm: Double-indexed Building query histograms... [21.926s] Loading reference sequences... [31.545s] Masking reference... [32.042s] Initializing dictionary... [0.08s] Initializing temporary storage... [0.015s] Building reference histograms... [32.502s] Allocating buffers... [0s] Processing query block 1, reference block 1/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.244s] Building query seed array... [2.54s] Computing hash join... [6.798s] Masking low complexity seeds... [0.233s] Searching alignments... [87.749s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 1/2, index chunk 2/4. Building reference seed array... [13.488s] Building query seed array... [3.504s] Computing hash join... [6.407s] Masking low complexity seeds... [0.222s] Searching alignments... [58.014s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.695s] Building query seed array... [3.275s] Computing hash join... [6.694s] Masking low complexity seeds... [0.294s] Searching alignments... [50.967s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.636s] Building query seed array... [2.75s] Computing hash join... [6.147s] Masking low complexity seeds... [0.277s] Searching alignments... [46.642s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.657s] Building query seed array... [2.379s] Computing hash join... [6.141s] Masking low complexity seeds... [0.215s] Searching alignments... [46.859s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 2/2, index chunk 2/4. Building reference seed array... [13.016s] Building query seed array... [3.283s] Computing hash join... [6.637s] Masking low complexity seeds... [0.237s] Searching alignments... [35.924s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.992s] Building query seed array... [3.038s] Computing hash join... [6.112s] Masking low complexity seeds... [0.227s] Searching alignments... [40.578s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.354s] Building query seed array... [2.496s] Computing hash join... [6.071s] Masking low complexity seeds... [0.218s] Searching alignments... [34.862s] Deallocating memory... [0s] Deallocating buffers... [2.083s] Clearing query masking... [1.865s] Opening temporary output file... [0.003s] Computing alignments... Loading trace points... [7.784s] Sorting trace points... [1.414s] Computing alignments... [37.022s] Deallocating buffers... [0.024s] Loading trace points... [0.085s] Sorting trace points... [1.152s] Computing alignments... [36.681s] Deallocating buffers... [0.016s] Loading trace points... [0.001s] Sorting trace points... [1.475s] Computing alignments... [36.919s] Deallocating buffers... [0.117s] Loading trace points... [0.066s] Sorting trace points... [1.377s] Computing alignments... [36.639s] Deallocating buffers... [0.015s] Loading trace points... [0.067s] Sorting trace points... [1.346s] Computing alignments... [36.609s] Deallocating buffers... [0.019s] Loading trace points... [0.055s] Sorting trace points... [1.42s] Computing alignments... [37.116s] Deallocating buffers... [0.015s] Loading trace points... [0.074s] Sorting trace points... [1.403s] Computing alignments... [36.739s] Deallocating buffers... [0.113s] Loading trace points... [0.041s] Sorting trace points... [1.027s] Computing alignments... [36.518s] Deallocating buffers... [0.017s] Loading trace points... [0.053s] Sorting trace points... [1.415s] Computing alignments... [37.71s] Deallocating buffers... [0.016s] Loading trace points... [0.046s] Sorting trace points... [1.379s] Computing alignments... [38.622s] Deallocating buffers... [0.02s] Loading trace points... [0.056s] Sorting trace points... [1.502s] Computing alignments... [38.61s] Deallocating buffers... [0.016s] Loading trace points... [0.944s] Sorting trace points... [1.142s] Computing alignments... [38.532s] Deallocating buffers... [0.018s] Loading trace points... [0.06s] Sorting trace points... [1.5s] Computing alignments... [38.451s] Deallocating buffers... [0.02s] Loading trace points... [0.071s] Sorting trace points... [1.307s] Computing alignments... [38.549s] Deallocating buffers... [0.017s] Loading trace points... [0.25s] Sorting trace points... [1.502s] Computing alignments... [38.507s] Deallocating buffers... [0.016s] Loading trace points... [0s] Sorting trace points... [1.465s] Computing alignments... [38.217s] Deallocating buffers... [0.021s] Loading trace points... [0s] [633.551s] Deallocating reference... [0.062s] Loading reference sequences... [31.186s] Masking reference... [30.972s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.008s] Building reference histograms... [33.464s] Allocating buffers... [0s] Processing query block 1, reference block 2/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.716s] Building query seed array... [2.475s] Computing hash join... [6.652s] Masking low complexity seeds... [0.644s] Searching alignments... [85.926s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.783s] Building query seed array... [3.387s] Computing hash join... [6.959s] Masking low complexity seeds... [0.269s] Searching alignments... [54.95s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.764s] Building query seed array... [3.303s] Computing hash join... [6.873s] Masking low complexity seeds... [0.273s] Searching alignments... [50.651s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.276s] Building query seed array... [2.844s] Computing hash join... [6.526s] Masking low complexity seeds... [0.24s] Searching alignments... [44.844s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.733s] Building query seed array... [2.372s] Computing hash join... [6.085s] Masking low complexity seeds... [0.237s] Searching alignments... [45.838s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.796s] Building query seed array... [2.867s] Computing hash join... [6.73s] Masking low complexity seeds... [0.318s] Searching alignments... [35.731s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.777s] Building query seed array... [2.897s] Computing hash join... [7.18s] Masking low complexity seeds... [0.229s] Searching alignments... [39.124s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.284s] Building query seed array... [2.57s] Computing hash join... [6.454s] Masking low complexity seeds... [0.227s] Searching alignments... [34.857s] Deallocating memory... [0s] Deallocating buffers... [2.242s] Clearing query masking... [1.781s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [7.564s] Sorting trace points... [1.387s] Computing alignments... [36.961s] Deallocating buffers... [0.018s] Loading trace points... [0.049s] Sorting trace points... [1.554s] Computing alignments... [36.84s] Deallocating buffers... [0.245s] Loading trace points... [0.072s] Sorting trace points... [1.443s] Computing alignments... [36.792s] Deallocating buffers... [0.016s] Loading trace points... [0.058s] Sorting trace points... [1.374s] Computing alignments... [36.633s] Deallocating buffers... [0.019s] Loading trace points... [0.082s] Sorting trace points... [1.376s] Computing alignments... [36.585s] Deallocating buffers... [0.015s] Loading trace points... [0.048s] Sorting trace points... [1.389s] Computing alignments... [36.938s] Deallocating buffers... [0.019s] Loading trace points... [0.076s] Sorting trace points... [1.368s] Computing alignments... [36.677s] Deallocating buffers... [0.015s] Loading trace points... [0s] Sorting trace points... [1.097s] Computing alignments... [36.579s] Deallocating buffers... [0.018s] Loading trace points... [0.042s] Sorting trace points... [1.129s] Computing alignments... [37.595s] Deallocating buffers... [0.016s] Loading trace points... [0.071s] Sorting trace points... [1.246s] Computing alignments... [38.454s] Deallocating buffers... [0.017s] Loading trace points... [0.081s] Sorting trace points... [1.437s] Computing alignments... [38.653s] Deallocating buffers... [0.016s] Loading trace points... [0.065s] Sorting trace points... [1.147s] Computing alignments... [38.389s] Deallocating buffers... [0.017s] Loading trace points... [0.056s] Sorting trace points... [1.439s] Computing alignments... [38.458s] Deallocating buffers... [0.02s] Loading trace points... [0.043s] Sorting trace points... [1.574s] Computing alignments... [38.643s] Deallocating buffers... [0.178s] Loading trace points... [0.063s] Sorting trace points... [1.431s] Computing alignments... [38.502s] Deallocating buffers... [0.017s] Loading trace points... [0s] Sorting trace points... [1.135s] Computing alignments... [38.167s] Deallocating buffers... [0.019s] Loading trace points... [0s] [631.561s] Deallocating reference... [0.057s] Loading reference sequences... [32.626s] Masking reference... [30.949s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.009s] Building reference histograms... [33.198s] Allocating buffers... [0s] Processing query block 1, reference block 3/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.139s] Building query seed array... [2.477s] Computing hash join... [7.177s] Masking low complexity seeds... [0.523s] Searching alignments... [88.175s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.277s] Building query seed array... [3.203s] Computing hash join... [6.375s] Masking low complexity seeds... [0.256s] Searching alignments... [57.437s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 1/2, index chunk 3/4. Building reference seed array... [14.203s] Building query seed array... [3.365s] Computing hash join... [6.739s] Masking low complexity seeds... [0.266s] Searching alignments... [50.259s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.57s] Building query seed array... [2.843s] Computing hash join... [6.476s] Masking low complexity seeds... [0.226s] Searching alignments... [45.251s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.8s] Building query seed array... [2.333s] Computing hash join... [6.275s] Masking low complexity seeds... [0.225s] Searching alignments... [45.507s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.708s] Building query seed array... [2.825s] Computing hash join... [6.798s] Masking low complexity seeds... [0.298s] Searching alignments... [36.082s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.805s] Building query seed array... [2.977s] Computing hash join... [7.16s] Masking low complexity seeds... [0.334s] Searching alignments... [41.215s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.433s] Building query seed array... [2.468s] Computing hash join... [6.407s] Masking low complexity seeds... [0.207s] Searching alignments... [35.223s] Deallocating memory... [0s] Deallocating buffers... [2.008s] Clearing query masking... [1.944s] Opening temporary output file... [0.002s] Computing alignments... Loading trace points... [7.359s] Sorting trace points... [1.493s] Computing alignments... [37.126s] Deallocating buffers... [0.018s] Loading trace points... [0.045s] Sorting trace points... [1.482s] Computing alignments... [37.092s] Deallocating buffers... [0.176s] Loading trace points... [0.001s] Sorting trace points... [1.4s] Computing alignments... [36.72s] Deallocating buffers... [0.019s] Loading trace points... [0.078s] Sorting trace points... [1.406s] Computing alignments... [36.568s] Deallocating buffers... [0.016s] Loading trace points... [0.11s] Sorting trace points... [1.37s] Computing alignments... [36.458s] Deallocating buffers... [0.015s] Loading trace points... [0.076s] Sorting trace points... [1.013s] Computing alignments... [36.99s] Deallocating buffers... [0.017s] Loading trace points... [0.085s] Sorting trace points... [1.475s] Computing alignments... [36.568s] Deallocating buffers... [0.019s] Loading trace points... [0.033s] Sorting trace points... [1.306s] Computing alignments... [36.572s] Deallocating buffers... [0.11s] Loading trace points... [0.051s] Sorting trace points... [1.097s] Computing alignments... [37.517s] Deallocating buffers... [0.017s] Loading trace points... [0.082s] Sorting trace points... [1.315s] Computing alignments... [38.461s] Deallocating buffers... [0.017s] Loading trace points... [0.054s] Sorting trace points... [1.469s] Computing alignments... [38.728s] Deallocating buffers... [0.016s] Loading trace points... [0.056s] Sorting trace points... [1.394s] Computing alignments... [38.452s] Deallocating buffers... [0.016s] Loading trace points... [0.15s] Sorting trace points... [1.563s] Computing alignments... [38.491s] Deallocating buffers... [0.016s] Loading trace points... [0.054s] Sorting trace points... [1.28s] Computing alignments... [38.737s] Deallocating buffers... [0.106s] Loading trace points... [0.071s] Sorting trace points... [1.144s] Computing alignments... [38.404s] Deallocating buffers... [0.018s] Loading trace points... [0s] Sorting trace points... [1.219s] Computing alignments... [38.285s] Deallocating buffers... [0.017s] Loading trace points... [0s] [631.785s] Deallocating reference... [0.06s] Loading reference sequences... [31.506s] Masking reference... [30.956s] Initializing dictionary... [0.077s] Initializing temporary storage... [0.009s] Building reference histograms... [32.79s] Allocating buffers... [0s] Processing query block 1, reference block 4/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.154s] Building query seed array... [2.494s] Computing hash join... [7.178s] Masking low complexity seeds... [0.568s] Searching alignments... [85.88s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.884s] Building query seed array... [3.385s] Computing hash join... [6.497s] Masking low complexity seeds... [0.224s] Searching alignments... [57.005s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.659s] Building query seed array... [3.388s] Computing hash join... [6.443s] Masking low complexity seeds... [0.224s] Searching alignments... [51.665s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.532s] Building query seed array... [2.71s] Computing hash join... [6.971s] Masking low complexity seeds... [0.295s] Searching alignments... [45.747s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.157s] Building query seed array... [2.4s] Computing hash join... [6.447s] Masking low complexity seeds... [0.215s] Searching alignments... [45.198s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.833s] Building query seed array... [2.848s] Computing hash join... [6.313s] Masking low complexity seeds... [0.241s] Searching alignments... [36.113s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.99s] Building query seed array... [2.883s] Computing hash join... [6.441s] Masking low complexity seeds... [0.253s] Searching alignments... [39.926s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.593s] Building query seed array... [2.414s] Computing hash join... [6.309s] Masking low complexity seeds... [0.231s] Searching alignments... [34.72s] Deallocating memory... [0s] Deallocating buffers... [2.082s] Clearing query masking... [1.878s] Opening temporary output file... [0.002s] Computing alignments... Loading trace points... [7.345s] Sorting trace points... [1.558s] Computing alignments... [37.142s] Deallocating buffers... [0.017s] Loading trace points... [0.05s] Sorting trace points... [1.595s] Computing alignments... [36.825s] Deallocating buffers... [0.139s] Loading trace points... [0s] Sorting trace points... [1.414s] Computing alignments... [36.719s] Deallocating buffers... [0.016s] Loading trace points... [0.08s] Sorting trace points... [1.413s] Computing alignments... [36.668s] Deallocating buffers... [0.035s] Loading trace points... [0.064s] Sorting trace points... [1.367s] Computing alignments... [36.505s] Deallocating buffers... [0.015s] Loading trace points... [0.055s] Sorting trace points... [1.33s] Computing alignments... [36.864s] Deallocating buffers... [0.016s] Loading trace points... [0.065s] Sorting trace points... [1.409s] Computing alignments... [36.558s] Deallocating buffers... [0.016s] Loading trace points... [0.05s] Sorting trace points... [1.621s] Computing alignments... [36.503s] Deallocating buffers... [0.281s] Loading trace points... [0.061s] Sorting trace points... [1.467s] Computing alignments... [37.536s] Deallocating buffers... [0.028s] Loading trace points... [0.083s] Sorting trace points... [1.45s] Computing alignments... [38.418s] Deallocating buffers... [0.02s] Loading trace points... [0.083s] Sorting trace points... [1.268s] Computing alignments... [38.523s] Deallocating buffers... [0.019s] Loading trace points... [0.478s] Sorting trace points... [1.512s] Computing alignments... [38.235s] Deallocating buffers... [0.016s] Loading trace points... [0.067s] Sorting trace points... [1.086s] Computing alignments... [38.41s] Deallocating buffers... [0.017s] Loading trace points... [0.081s] Sorting trace points... [1.545s] Computing alignments... [38.509s] Deallocating buffers... [0.046s] Loading trace points... [0.571s] Sorting trace points... [1.657s] Computing alignments... [38.377s] Deallocating buffers... [0.199s] Loading trace points... [0s] Sorting trace points... [1.273s] Computing alignments... [38.201s] Deallocating buffers... [0.017s] Loading trace points... [0s] [633.218s] Deallocating reference... [0.056s] Loading reference sequences... [29.501s] Masking reference... [30.968s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.007s] Building reference histograms... [33.602s] Allocating buffers... [0s] Processing query block 1, reference block 5/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.16s] Building query seed array... [2.427s] Computing hash join... [7.273s] Masking low complexity seeds... [0.507s] Searching alignments... [86.61s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.777s] Building query seed array... [3.651s] Computing hash join... [6.992s] Masking low complexity seeds... [0.244s] Searching alignments... [55.574s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 1/2, index chunk 3/4. Building reference seed array... [14.289s] Building query seed array... [3.411s] Computing hash join... [6.896s] Masking low complexity seeds... [0.243s] Searching alignments... [49.926s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.708s] Building query seed array... [2.675s] Computing hash join... [6.682s] Masking low complexity seeds... [0.233s] Searching alignments... [45.399s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.599s] Building query seed array... [2.472s] Computing hash join... [6.276s] Masking low complexity seeds... [0.233s] Searching alignments... [46.344s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 2/2, index chunk 2/4. Building reference seed array... [13.307s] Building query seed array... [2.865s] Computing hash join... [7.004s] Masking low complexity seeds... [0.358s] Searching alignments... [36.799s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.633s] Building query seed array... [2.932s] Computing hash join... [7.383s] Masking low complexity seeds... [0.215s] Searching alignments... [40.131s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.385s] Building query seed array... [2.481s] Computing hash join... [6.534s] Masking low complexity seeds... [0.208s] Searching alignments... [34.798s] Deallocating memory... [0s] Deallocating buffers... [2.194s] Clearing query masking... [1.891s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [7.361s] Sorting trace points... [1.478s] Computing alignments... [36.832s] Deallocating buffers... [0.019s] Loading trace points... [0.051s] Sorting trace points... [1.408s] Computing alignments... [36.614s] Deallocating buffers... [0.015s] Loading trace points... [0.098s] Sorting trace points... [1.415s] Computing alignments... [36.47s] Deallocating buffers... [0.019s] Loading trace points... [0.074s] Sorting trace points... [1.086s] Computing alignments... [36.493s] Deallocating buffers... [0.017s] Loading trace points... [0.065s] Sorting trace points... [1.023s] Computing alignments... [36.293s] Deallocating buffers... [0.017s] Loading trace points... [0.04s] Sorting trace points... [1.532s] Computing alignments... [36.811s] Deallocating buffers... [0.089s] Loading trace points... [0.128s] Sorting trace points... [1.061s] Computing alignments... [36.524s] Deallocating buffers... [0.017s] Loading trace points... [0.039s] Sorting trace points... [1.093s] Computing alignments... [36.32s] Deallocating buffers... [0.017s] Loading trace points... [0.064s] Sorting trace points... [1.448s] Computing alignments... [37.379s] Deallocating buffers... [0.015s] Loading trace points... [0.069s] Sorting trace points... [1.45s] Computing alignments... [38.28s] Deallocating buffers... [0.02s] Loading trace points... [0.451s] Sorting trace points... [1.219s] Computing alignments... [38.412s] Deallocating buffers... [0.018s] Loading trace points... [0.066s] Sorting trace points... [1.631s] Computing alignments... [38.127s] Deallocating buffers... [0.084s] Loading trace points... [0.066s] Sorting trace points... [1.638s] Computing alignments... [38.239s] Deallocating buffers... [0.2s] Loading trace points... [0.417s] Sorting trace points... [1.596s] Computing alignments... [38.448s] Deallocating buffers... [0.075s] Loading trace points... [0.099s] Sorting trace points... [1.628s] Computing alignments... [38.375s] Deallocating buffers... [0.193s] Loading trace points... [0s] Sorting trace points... [1.069s] Computing alignments... [37.93s] Deallocating buffers... [0.018s] Loading trace points... [0s] [629.451s] Deallocating reference... [0.063s] Loading reference sequences... [29.269s] Masking reference... [30.939s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.007s] Building reference histograms... [33.298s] Allocating buffers... [0s] Processing query block 1, reference block 6/14, shape 1/2, index chunk 1/4. Building reference seed array... [9.862s] Building query seed array... [2.53s] Computing hash join... [7.185s] Masking low complexity seeds... [0.592s] Searching alignments... [85.716s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.818s] Building query seed array... [3.495s] Computing hash join... [7.3s] Masking low complexity seeds... [0.288s] Searching alignments... [57.12s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.788s] Building query seed array... [3.184s] Computing hash join... [7.177s] Masking low complexity seeds... [0.346s] Searching alignments... [48.504s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.642s] Building query seed array... [2.738s] Computing hash join... [6.787s] Masking low complexity seeds... [0.24s] Searching alignments... [43.411s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.993s] Building query seed array... [2.351s] Computing hash join... [6.469s] Masking low complexity seeds... [0.238s] Searching alignments... [44.191s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.523s] Building query seed array... [2.961s] Computing hash join... [6.858s] Masking low complexity seeds... [0.217s] Searching alignments... [36.474s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.745s] Building query seed array... [2.886s] Computing hash join... [6.986s] Masking low complexity seeds... [0.226s] Searching alignments... [38.994s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.118s] Building query seed array... [2.528s] Computing hash join... [6.73s] Masking low complexity seeds... [0.23s] Searching alignments... [34.317s] Deallocating memory... [0s] Deallocating buffers... [2.124s] Clearing query masking... [1.94s] Opening temporary output file... [0.002s] Computing alignments... Loading trace points... [7.479s] Sorting trace points... [1.451s] Computing alignments... [36.955s] Deallocating buffers... [0.018s] Loading trace points... [0.033s] Sorting trace points... [1.419s] Computing alignments... [36.725s] Deallocating buffers... [0.019s] Loading trace points... [0.076s] Sorting trace points... [1.343s] Computing alignments... [36.545s] Deallocating buffers... [0.018s] Loading trace points... [0.097s] Sorting trace points... [1.402s] Computing alignments... [36.394s] Deallocating buffers... [0.016s] Loading trace points... [0.051s] Sorting trace points... [1.388s] Computing alignments... [36.366s] Deallocating buffers... [0.019s] Loading trace points... [0.091s] Sorting trace points... [1.371s] Computing alignments... [36.746s] Deallocating buffers... [0.029s] Loading trace points... [0.676s] Sorting trace points... [1.185s] Computing alignments... [36.421s] Deallocating buffers... [0.016s] Loading trace points... [0.091s] Sorting trace points... [1.023s] Computing alignments... [36.358s] Deallocating buffers... [0.017s] Loading trace points... [0.047s] Sorting trace points... [1.031s] Computing alignments... [37.286s] Deallocating buffers... [0.017s] Loading trace points... [0.056s] Sorting trace points... [1.383s] Computing alignments... [38.172s] Deallocating buffers... [0.016s] Loading trace points... [0.053s] Sorting trace points... [1.471s] Computing alignments... [38.3s] Deallocating buffers... [0.02s] Loading trace points... [0.079s] Sorting trace points... [1.164s] Computing alignments... [38.212s] Deallocating buffers... [0.019s] Loading trace points... [0.05s] Sorting trace points... [1.51s] Computing alignments... [38.303s] Deallocating buffers... [0.02s] Loading trace points... [0.07s] Sorting trace points... [1.363s] Computing alignments... [38.373s] Deallocating buffers... [0.019s] Loading trace points... [0.101s] Sorting trace points... [1.458s] Computing alignments... [38.268s] Deallocating buffers... [0.016s] Loading trace points... [0s] Sorting trace points... [1.379s] Computing alignments... [38.213s] Deallocating buffers... [0.029s] Loading trace points... [0s] [628.521s] Deallocating reference... [0.07s] Loading reference sequences... [29.432s] Masking reference... [30.947s] Initializing dictionary... [0.077s] Initializing temporary storage... [0.006s] Building reference histograms... [32.658s] Allocating buffers... [0s] Processing query block 1, reference block 7/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.359s] Building query seed array... [2.503s] Computing hash join... [7.027s] Masking low complexity seeds... [0.591s] Searching alignments... [87.201s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 1/2, index chunk 2/4. Building reference seed array... [13.525s] Building query seed array... [3.516s] Computing hash join... [6.114s] Masking low complexity seeds... [0.225s] Searching alignments... [57.361s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.911s] Building query seed array... [3.247s] Computing hash join... [6.167s] Masking low complexity seeds... [0.259s] Searching alignments... [50.867s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 1/2, index chunk 4/4. Building reference seed array... [11.25s] Building query seed array... [2.769s] Computing hash join... [6.785s] Masking low complexity seeds... [0.377s] Searching alignments... [45.912s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.881s] Building query seed array... [2.547s] Computing hash join... [5.868s] Masking low complexity seeds... [0.212s] Searching alignments... [46.601s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 2/2, index chunk 2/4. Building reference seed array... [13.001s] Building query seed array... [2.89s] Computing hash join... [6.185s] Masking low complexity seeds... [0.267s] Searching alignments... [36.319s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.668s] Building query seed array... [2.962s] Computing hash join... [6.355s] Masking low complexity seeds... [0.268s] Searching alignments... [40.127s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.732s] Building query seed array... [2.311s] Computing hash join... [6.11s] Masking low complexity seeds... [0.26s] Searching alignments... [34.374s] Deallocating memory... [0s] Deallocating buffers... [2.661s] Clearing query masking... [1.805s] Opening temporary output file... [0.002s] Computing alignments... Loading trace points... [7.757s] Sorting trace points... [1.259s] Computing alignments... [37.005s] Deallocating buffers... [0.018s] Loading trace points... [0.038s] Sorting trace points... [1.458s] Computing alignments... [36.831s] Deallocating buffers... [0.084s] Loading trace points... [0.001s] Sorting trace points... [1.246s] Computing alignments... [36.722s] Deallocating buffers... [0.016s] Loading trace points... [0.123s] Sorting trace points... [1.462s] Computing alignments... [36.549s] Deallocating buffers... [0.031s] Loading trace points... [0.087s] Sorting trace points... [1.444s] Computing alignments... [36.404s] Deallocating buffers... [0.033s] Loading trace points... [0.493s] Sorting trace points... [1.682s] Computing alignments... [36.923s] Deallocating buffers... [0.378s] Loading trace points... [0.077s] Sorting trace points... [1.073s] Computing alignments... [36.563s] Deallocating buffers... [0.018s] Loading trace points... [0.048s] Sorting trace points... [1.228s] Computing alignments... [36.39s] Deallocating buffers... [0.016s] Loading trace points... [0.053s] Sorting trace points... [1.394s] Computing alignments... [37.525s] Deallocating buffers... [0.017s] Loading trace points... [0.07s] Sorting trace points... [1.614s] Computing alignments... [38.353s] Deallocating buffers... [0.072s] Loading trace points... [0.06s] Sorting trace points... [1.828s] Computing alignments... [38.559s] Deallocating buffers... [0.411s] Loading trace points... [0.075s] Sorting trace points... [1.25s] Computing alignments... [38.268s] Deallocating buffers... [0.017s] Loading trace points... [0.061s] Sorting trace points... [1.269s] Computing alignments... [38.278s] Deallocating buffers... [0.076s] Loading trace points... [0.055s] Sorting trace points... [1.159s] Computing alignments... [38.398s] Deallocating buffers... [0.018s] Loading trace points... [0.078s] Sorting trace points... [1.277s] Computing alignments... [38.229s] Deallocating buffers... [0.019s] Loading trace points... [0s] Sorting trace points... [1.452s] Computing alignments... [38.078s] Deallocating buffers... [0.02s] Loading trace points... [0s] [631.67s] Deallocating reference... [0.058s] Loading reference sequences... [29.324s] Masking reference... [30.978s] Initializing dictionary... [0.077s] Initializing temporary storage... [0.008s] Building reference histograms... [32.678s] Allocating buffers... [0s] Processing query block 1, reference block 8/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.259s] Building query seed array... [2.466s] Computing hash join... [7.297s] Masking low complexity seeds... [0.313s] Searching alignments... [86.161s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 1/2, index chunk 2/4. Building reference seed array... [13.206s] Building query seed array... [3.522s] Computing hash join... [7.257s] Masking low complexity seeds... [0.349s] Searching alignments... [57.835s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.894s] Building query seed array... [3.334s] Computing hash join... [7.317s] Masking low complexity seeds... [0.251s] Searching alignments... [51.597s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.723s] Building query seed array... [2.662s] Computing hash join... [6.517s] Masking low complexity seeds... [0.224s] Searching alignments... [45.714s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.884s] Building query seed array... [2.539s] Computing hash join... [6.427s] Masking low complexity seeds... [0.241s] Searching alignments... [45.428s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 2/2, index chunk 2/4. Building reference seed array... [13.428s] Building query seed array... [2.886s] Computing hash join... [7.001s] Masking low complexity seeds... [0.238s] Searching alignments... [36.153s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 2/2, index chunk 3/4. Building reference seed array... [14.226s] Building query seed array... [3.06s] Computing hash join... [6.961s] Masking low complexity seeds... [0.232s] Searching alignments... [40.197s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.691s] Building query seed array... [2.519s] Computing hash join... [6.888s] Masking low complexity seeds... [0.221s] Searching alignments... [35.109s] Deallocating memory... [0s] Deallocating buffers... [2.458s] Clearing query masking... [1.974s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [7.477s] Sorting trace points... [1.506s] Computing alignments... [36.903s] Deallocating buffers... [0.018s] Loading trace points... [0.046s] Sorting trace points... [1.217s] Computing alignments... [36.785s] Deallocating buffers... [0.166s] Loading trace points... [0.046s] Sorting trace points... [1.079s] Computing alignments... [36.571s] Deallocating buffers... [0.017s] Loading trace points... [0.095s] Sorting trace points... [1.091s] Computing alignments... [36.491s] Deallocating buffers... [0.016s] Loading trace points... [0.099s] Sorting trace points... [1.009s] Computing alignments... [36.525s] Deallocating buffers... [0.017s] Loading trace points... [0.042s] Sorting trace points... [1.593s] Computing alignments... [37.011s] Deallocating buffers... [0.255s] Loading trace points... [0.083s] Sorting trace points... [1.198s] Computing alignments... [36.534s] Deallocating buffers... [0.045s] Loading trace points... [0.061s] Sorting trace points... [1.265s] Computing alignments... [36.366s] Deallocating buffers... [0.099s] Loading trace points... [0.097s] Sorting trace points... [1.653s] Computing alignments... [37.503s] Deallocating buffers... [0.177s] Loading trace points... [0.095s] Sorting trace points... [1.557s] Computing alignments... [38.414s] Deallocating buffers... [0.158s] Loading trace points... [0.063s] Sorting trace points... [1.489s] Computing alignments... [38.512s] Deallocating buffers... [0.016s] Loading trace points... [0.089s] Sorting trace points... [1.603s] Computing alignments... [38.378s] Deallocating buffers... [0.081s] Loading trace points... [0.087s] Sorting trace points... [1.228s] Computing alignments... [38.393s] Deallocating buffers... [0.022s] Loading trace points... [0.065s] Sorting trace points... [1.181s] Computing alignments... [38.422s] Deallocating buffers... [0.018s] Loading trace points... [0.093s] Sorting trace points... [1.551s] Computing alignments... [38.409s] Deallocating buffers... [0.271s] Loading trace points... [0s] Sorting trace points... [1.243s] Computing alignments... [38.095s] Deallocating buffers... [0.019s] Loading trace points... [0s] [630.989s] Deallocating reference... [0.061s] Loading reference sequences... [31.607s] Masking reference... [30.898s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.008s] Building reference histograms... [32.386s] Allocating buffers... [0s] Processing query block 1, reference block 9/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.5s] Building query seed array... [2.565s] Computing hash join... [7.518s] Masking low complexity seeds... [0.481s] Searching alignments... [87.323s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 1/2, index chunk 2/4. Building reference seed array... [13.527s] Building query seed array... [3.501s] Computing hash join... [7.246s] Masking low complexity seeds... [0.266s] Searching alignments... [57.48s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.693s] Building query seed array... [3.196s] Computing hash join... [6.857s] Masking low complexity seeds... [0.241s] Searching alignments... [50.103s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.839s] Building query seed array... [2.782s] Computing hash join... [6.71s] Masking low complexity seeds... [0.232s] Searching alignments... [43.49s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.779s] Building query seed array... [2.448s] Computing hash join... [6.37s] Masking low complexity seeds... [0.256s] Searching alignments... [45.41s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 2/2, index chunk 2/4. Building reference seed array... [13.385s] Building query seed array... [2.78s] Computing hash join... [6.854s] Masking low complexity seeds... [0.22s] Searching alignments... [36.136s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.634s] Building query seed array... [2.847s] Computing hash join... [6.824s] Masking low complexity seeds... [0.25s] Searching alignments... [41.589s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.905s] Building query seed array... [2.39s] Computing hash join... [6.874s] Masking low complexity seeds... [0.238s] Searching alignments... [34.699s] Deallocating memory... [0s] Deallocating buffers... [2.477s] Clearing query masking... [1.966s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [7.538s] Sorting trace points... [1.504s] Computing alignments... [36.903s] Deallocating buffers... [0.017s] Loading trace points... [0.037s] Sorting trace points... [1.597s] Computing alignments... [36.971s] Deallocating buffers... [0.359s] Loading trace points... [0.088s] Sorting trace points... [1.431s] Computing alignments... [36.614s] Deallocating buffers... [0.019s] Loading trace points... [0.106s] Sorting trace points... [1.348s] Computing alignments... [36.58s] Deallocating buffers... [0.015s] Loading trace points... [0.098s] Sorting trace points... [1.434s] Computing alignments... [36.446s] Deallocating buffers... [0.015s] Loading trace points... [0.076s] Sorting trace points... [1.569s] Computing alignments... [36.941s] Deallocating buffers... [0.319s] Loading trace points... [0.087s] Sorting trace points... [1.372s] Computing alignments... [36.556s] Deallocating buffers... [0.015s] Loading trace points... [0.045s] Sorting trace points... [1.294s] Computing alignments... [36.428s] Deallocating buffers... [0.016s] Loading trace points... [0.041s] Sorting trace points... [1.767s] Computing alignments... [37.541s] Deallocating buffers... [0.396s] Loading trace points... [0.076s] Sorting trace points... [1.51s] Computing alignments... [38.345s] Deallocating buffers... [0.02s] Loading trace points... [0.056s] Sorting trace points... [1.547s] Computing alignments... [38.492s] Deallocating buffers... [0.057s] Loading trace points... [0.063s] Sorting trace points... [1.499s] Computing alignments... [38.327s] Deallocating buffers... [0.02s] Loading trace points... [0.101s] Sorting trace points... [1.435s] Computing alignments... [38.359s] Deallocating buffers... [0.02s] Loading trace points... [0.057s] Sorting trace points... [1.497s] Computing alignments... [38.453s] Deallocating buffers... [0.017s] Loading trace points... [0.064s] Sorting trace points... [1.481s] Computing alignments... [38.362s] Deallocating buffers... [0.016s] Loading trace points... [0s] Sorting trace points... [1.265s] Computing alignments... [38.168s] Deallocating buffers... [0.017s] Loading trace points... [0s] [633.163s] Deallocating reference... [0.057s] Loading reference sequences... [29.297s] Masking reference... [30.875s] Initializing dictionary... [0.077s] Initializing temporary storage... [0.008s] Building reference histograms... [32.57s] Allocating buffers... [0s] Processing query block 1, reference block 10/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.081s] Building query seed array... [2.445s] Computing hash join... [7.299s] Masking low complexity seeds... [0.55s] Searching alignments... [87.09s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 1/2, index chunk 2/4. Building reference seed array... [13.049s] Building query seed array... [3.463s] Computing hash join... [7.304s] Masking low complexity seeds... [0.307s] Searching alignments... [57.955s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.839s] Building query seed array... [3.17s] Computing hash join... [7.113s] Masking low complexity seeds... [0.292s] Searching alignments... [51.712s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.294s] Building query seed array... [2.809s] Computing hash join... [6.382s] Masking low complexity seeds... [0.238s] Searching alignments... [44.56s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.545s] Building query seed array... [2.341s] Computing hash join... [6.118s] Masking low complexity seeds... [0.224s] Searching alignments... [45.406s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.846s] Building query seed array... [2.953s] Computing hash join... [6.949s] Masking low complexity seeds... [0.222s] Searching alignments... [35.874s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.881s] Building query seed array... [2.973s] Computing hash join... [6.762s] Masking low complexity seeds... [0.222s] Searching alignments... [39.972s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.792s] Building query seed array... [2.492s] Computing hash join... [6.904s] Masking low complexity seeds... [0.228s] Searching alignments... [34.633s] Deallocating memory... [0s] Deallocating buffers... [2.495s] Clearing query masking... [1.96s] Opening temporary output file... [0.002s] Computing alignments... Loading trace points... [8.063s] Sorting trace points... [1.524s] Computing alignments... [36.813s] Deallocating buffers... [0.018s] Loading trace points... [0.039s] Sorting trace points... [1.214s] Computing alignments... [36.665s] Deallocating buffers... [0.139s] Loading trace points... [0.1s] Sorting trace points... [1.527s] Computing alignments... [36.5s] Deallocating buffers... [0.116s] Loading trace points... [0.077s] Sorting trace points... [1.276s] Computing alignments... [36.314s] Deallocating buffers... [0.016s] Loading trace points... [0.048s] Sorting trace points... [0.998s] Computing alignments... [36.29s] Deallocating buffers... [0.017s] Loading trace points... [0.045s] Sorting trace points... [1.051s] Computing alignments... [36.742s] Deallocating buffers... [0.016s] Loading trace points... [0.067s] Sorting trace points... [1.347s] Computing alignments... [36.282s] Deallocating buffers... [0.015s] Loading trace points... [0.051s] Sorting trace points... [1.244s] Computing alignments... [36.174s] Deallocating buffers... [0.018s] Loading trace points... [0.052s] Sorting trace points... [1.536s] Computing alignments... [37.294s] Deallocating buffers... [0.108s] Loading trace points... [0.106s] Sorting trace points... [1.449s] Computing alignments... [38.08s] Deallocating buffers... [0.016s] Loading trace points... [0.045s] Sorting trace points... [1.437s] Computing alignments... [38.302s] Deallocating buffers... [0.017s] Loading trace points... [0.076s] Sorting trace points... [1.437s] Computing alignments... [38.183s] Deallocating buffers... [0.019s] Loading trace points... [0.052s] Sorting trace points... [1.482s] Computing alignments... [38.27s] Deallocating buffers... [0.02s] Loading trace points... [0.052s] Sorting trace points... [1.466s] Computing alignments... [38.227s] Deallocating buffers... [0.038s] Loading trace points... [0.084s] Sorting trace points... [1.499s] Computing alignments... [38.109s] Deallocating buffers... [0.078s] Loading trace points... [0s] Sorting trace points... [1.386s] Computing alignments... [37.822s] Deallocating buffers... [0.016s] Loading trace points... [0s] [627.835s] Deallocating reference... [0.059s] Loading reference sequences... [29.267s] Masking reference... [32.12s] Initializing dictionary... [0.079s] Initializing temporary storage... [0.007s] Building reference histograms... [32.399s] Allocating buffers... [0s] Processing query block 1, reference block 11/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.445s] Building query seed array... [2.486s] Computing hash join... [7.528s] Masking low complexity seeds... [0.265s] Searching alignments... [85.248s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.889s] Building query seed array... [3.516s] Computing hash join... [7.18s] Masking low complexity seeds... [0.285s] Searching alignments... [54.756s] Deallocating memory... [0.003s] Processing query block 1, reference block 11/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.916s] Building query seed array... [3.433s] Computing hash join... [6.722s] Masking low complexity seeds... [0.262s] Searching alignments... [50.662s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.198s] Building query seed array... [2.601s] Computing hash join... [7.408s] Masking low complexity seeds... [0.363s] Searching alignments... [44.35s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.65s] Building query seed array... [2.316s] Computing hash join... [6.424s] Masking low complexity seeds... [0.212s] Searching alignments... [46.441s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 2/2, index chunk 2/4. Building reference seed array... [13.023s] Building query seed array... [2.983s] Computing hash join... [6.528s] Masking low complexity seeds... [0.223s] Searching alignments... [37.094s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.083s] Building query seed array... [2.988s] Computing hash join... [6.309s] Masking low complexity seeds... [0.263s] Searching alignments... [39.465s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.816s] Building query seed array... [2.521s] Computing hash join... [6.396s] Masking low complexity seeds... [0.248s] Searching alignments... [34.747s] Deallocating memory... [0s] Deallocating buffers... [2.577s] Clearing query masking... [1.96s] Opening temporary output file... [0.003s] Computing alignments... Loading trace points... [7.406s] Sorting trace points... [1.191s] Computing alignments... [36.752s] Deallocating buffers... [0.018s] Loading trace points... [0.043s] Sorting trace points... [1.424s] Computing alignments... [36.516s] Deallocating buffers... [0.019s] Loading trace points... [0.084s] Sorting trace points... [1.457s] Computing alignments... [36.572s] Deallocating buffers... [0.16s] Loading trace points... [0.071s] Sorting trace points... [1.083s] Computing alignments... [36.505s] Deallocating buffers... [0.017s] Loading trace points... [0.074s] Sorting trace points... [1.413s] Computing alignments... [36.245s] Deallocating buffers... [0.118s] Loading trace points... [0s] Sorting trace points... [1.227s] Computing alignments... [36.643s] Deallocating buffers... [0.08s] Loading trace points... [0.062s] Sorting trace points... [1.44s] Computing alignments... [36.376s] Deallocating buffers... [0.019s] Loading trace points... [0.583s] Sorting trace points... [1.421s] Computing alignments... [36.273s] Deallocating buffers... [0.015s] Loading trace points... [0.044s] Sorting trace points... [1.422s] Computing alignments... [37.324s] Deallocating buffers... [0.02s] Loading trace points... [0.062s] Sorting trace points... [1.147s] Computing alignments... [38.285s] Deallocating buffers... [0.018s] Loading trace points... [0.058s] Sorting trace points... [1.675s] Computing alignments... [38.501s] Deallocating buffers... [0.189s] Loading trace points... [0.074s] Sorting trace points... [1.579s] Computing alignments... [38.247s] Deallocating buffers... [0.02s] Loading trace points... [0.057s] Sorting trace points... [1.491s] Computing alignments... [38.273s] Deallocating buffers... [0.016s] Loading trace points... [0.075s] Sorting trace points... [1.473s] Computing alignments... [38.34s] Deallocating buffers... [0.02s] Loading trace points... [0.098s] Sorting trace points... [1.532s] Computing alignments... [38.344s] Deallocating buffers... [0.078s] Loading trace points... [0s] Sorting trace points... [1.353s] Computing alignments... [38.247s] Deallocating buffers... [0.166s] Loading trace points... [0s] [629.805s] Deallocating reference... [0.061s] Loading reference sequences... [262.008s] Masking reference... [31.467s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.007s] Building reference histograms... [32.216s] Allocating buffers... [0s] Processing query block 1, reference block 12/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.21s] Building query seed array... [2.451s] Computing hash join... [7.368s] Masking low complexity seeds... [0.263s] Searching alignments... [86.806s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 1/2, index chunk 2/4. Building reference seed array... [13.267s] Building query seed array... [3.369s] Computing hash join... [7.234s] Masking low complexity seeds... [0.274s] Searching alignments... [58.51s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 1/2, index chunk 3/4. Building reference seed array... [14.735s] Building query seed array... [3.443s] Computing hash join... [6.856s] Masking low complexity seeds... [0.236s] Searching alignments... [51.724s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.819s] Building query seed array... [2.774s] Computing hash join... [6.412s] Masking low complexity seeds... [0.227s] Searching alignments... [44.488s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.865s] Building query seed array... [2.254s] Computing hash join... [6.21s] Masking low complexity seeds... [0.234s] Searching alignments... [44.742s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 2/2, index chunk 2/4. Building reference seed array... [13.057s] Building query seed array... [2.759s] Computing hash join... [6.848s] Masking low complexity seeds... [0.218s] Searching alignments... [36.147s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.588s] Building query seed array... [2.817s] Computing hash join... [6.943s] Masking low complexity seeds... [0.226s] Searching alignments... [39.213s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.644s] Building query seed array... [2.428s] Computing hash join... [6.622s] Masking low complexity seeds... [0.241s] Searching alignments... [34.748s] Deallocating memory... [0s] Deallocating buffers... [2.562s] Clearing query masking... [1.853s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [7.277s] Sorting trace points... [1.497s] Computing alignments... [36.846s] Deallocating buffers... [0.016s] Loading trace points... [0.051s] Sorting trace points... [1.391s] Computing alignments... [36.661s] Deallocating buffers... [0.016s] Loading trace points... [0s] Sorting trace points... [1.43s] Computing alignments... [36.461s] Deallocating buffers... [0.019s] Loading trace points... [0.379s] Sorting trace points... [1.383s] Computing alignments... [36.454s] Deallocating buffers... [0.015s] Loading trace points... [0.078s] Sorting trace points... [1.38s] Computing alignments... [36.319s] Deallocating buffers... [0.019s] Loading trace points... [0.061s] Sorting trace points... [1.427s] Computing alignments... [36.651s] Deallocating buffers... [0.015s] Loading trace points... [0.089s] Sorting trace points... [1.379s] Computing alignments... [36.419s] Deallocating buffers... [0.043s] Loading trace points... [0.041s] Sorting trace points... [1.329s] Computing alignments... [36.231s] Deallocating buffers... [0.212s] Loading trace points... [0.059s] Sorting trace points... [1.17s] Computing alignments... [37.308s] Deallocating buffers... [0.017s] Loading trace points... [0.072s] Sorting trace points... [1.569s] Computing alignments... [38.243s] Deallocating buffers... [0.242s] Loading trace points... [0.054s] Sorting trace points... [1.295s] Computing alignments... [38.489s] Deallocating buffers... [0.029s] Loading trace points... [0.085s] Sorting trace points... [1.57s] Computing alignments... [38.421s] Deallocating buffers... [0.267s] Loading trace points... [0.094s] Sorting trace points... [1.13s] Computing alignments... [38.271s] Deallocating buffers... [0.018s] Loading trace points... [0.05s] Sorting trace points... [1.503s] Computing alignments... [38.341s] Deallocating buffers... [0.016s] Loading trace points... [0.091s] Sorting trace points... [1.468s] Computing alignments... [38.182s] Deallocating buffers... [0.02s] Loading trace points... [0s] Sorting trace points... [1.457s] Computing alignments... [38.199s] Deallocating buffers... [0.25s] Loading trace points... [0s] [630.244s] Deallocating reference... [0.067s] Loading reference sequences... [30.725s] Masking reference... [31.402s] Initializing dictionary... [0.077s] Initializing temporary storage... [0.006s] Building reference histograms... [32.459s] Allocating buffers... [0s] Processing query block 1, reference block 13/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.558s] Building query seed array... [2.396s] Computing hash join... [7.55s] Masking low complexity seeds... [0.457s] Searching alignments... [87.218s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 1/2, index chunk 2/4. Building reference seed array... [13.224s] Building query seed array... [3.591s] Computing hash join... [7.338s] Masking low complexity seeds... [0.293s] Searching alignments... [57.648s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.85s] Building query seed array... [3.271s] Computing hash join... [7.212s] Masking low complexity seeds... [0.378s] Searching alignments... [52.192s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.597s] Building query seed array... [2.811s] Computing hash join... [6.512s] Masking low complexity seeds... [0.273s] Searching alignments... [45.28s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.891s] Building query seed array... [2.401s] Computing hash join... [6.599s] Masking low complexity seeds... [0.248s] Searching alignments... [46.063s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.708s] Building query seed array... [2.762s] Computing hash join... [7.313s] Masking low complexity seeds... [0.286s] Searching alignments... [35.717s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 2/2, index chunk 3/4. Building reference seed array... [14.092s] Building query seed array... [3.029s] Computing hash join... [7.567s] Masking low complexity seeds... [0.22s] Searching alignments... [39.894s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.719s] Building query seed array... [2.57s] Computing hash join... [6.503s] Masking low complexity seeds... [0.214s] Searching alignments... [34.155s] Deallocating memory... [0s] Deallocating buffers... [2.664s] Clearing query masking... [1.859s] Opening temporary output file... [0.002s] Computing alignments... Loading trace points... [7.335s] Sorting trace points... [1.549s] Computing alignments... [36.691s] Deallocating buffers... [0.019s] Loading trace points... [0.045s] Sorting trace points... [1.536s] Computing alignments... [36.583s] Deallocating buffers... [0.122s] Loading trace points... [0.08s] Sorting trace points... [1.52s] Computing alignments... [36.459s] Deallocating buffers... [0.05s] Loading trace points... [0.092s] Sorting trace points... [1.543s] Computing alignments... [36.353s] Deallocating buffers... [0.12s] Loading trace points... [0.069s] Sorting trace points... [1.394s] Computing alignments... [36.232s] Deallocating buffers... [0.015s] Loading trace points... [0.074s] Sorting trace points... [1.406s] Computing alignments... [36.608s] Deallocating buffers... [0.015s] Loading trace points... [0.065s] Sorting trace points... [1.387s] Computing alignments... [36.254s] Deallocating buffers... [0.019s] Loading trace points... [0s] Sorting trace points... [1.359s] Computing alignments... [36.279s] Deallocating buffers... [0.193s] Loading trace points... [0.054s] Sorting trace points... [1.432s] Computing alignments... [37.124s] Deallocating buffers... [0.028s] Loading trace points... [0.061s] Sorting trace points... [1.506s] Computing alignments... [38.099s] Deallocating buffers... [0.016s] Loading trace points... [0.047s] Sorting trace points... [1.577s] Computing alignments... [38.37s] Deallocating buffers... [0.14s] Loading trace points... [0.044s] Sorting trace points... [1.504s] Computing alignments... [38.108s] Deallocating buffers... [0.02s] Loading trace points... [0.049s] Sorting trace points... [1.487s] Computing alignments... [38.284s] Deallocating buffers... [0.089s] Loading trace points... [0.06s] Sorting trace points... [1.404s] Computing alignments... [38.285s] Deallocating buffers... [0.017s] Loading trace points... [0.088s] Sorting trace points... [1.814s] Computing alignments... [38.125s] Deallocating buffers... [0.157s] Loading trace points... [0s] Sorting trace points... [1.285s] Computing alignments... [37.997s] Deallocating buffers... [0.019s] Loading trace points... [0s] [628.961s] Deallocating reference... [0.063s] Loading reference sequences... [23.867s] Masking reference... [25.985s] Initializing dictionary... [0.063s] Initializing temporary storage... [0.006s] Building reference histograms... [26.625s] Allocating buffers... [0.001s] Processing query block 1, reference block 14/14, shape 1/2, index chunk 1/4. Building reference seed array... [8.424s] Building query seed array... [2.443s] Computing hash join... [5.302s] Masking low complexity seeds... [0.568s] Searching alignments... [70.802s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 1/2, index chunk 2/4. Building reference seed array... [10.289s] Building query seed array... [3.573s] Computing hash join... [5.295s] Masking low complexity seeds... [0.219s] Searching alignments... [45.404s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 1/2, index chunk 3/4. Building reference seed array... [11.031s] Building query seed array... [3.196s] Computing hash join... [5.143s] Masking low complexity seeds... [0.22s] Searching alignments... [40.646s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 1/2, index chunk 4/4. Building reference seed array... [8.36s] Building query seed array... [2.751s] Computing hash join... [5.425s] Masking low complexity seeds... [0.227s] Searching alignments... [36.629s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 2/2, index chunk 1/4. Building reference seed array... [8.423s] Building query seed array... [2.637s] Computing hash join... [5.176s] Masking low complexity seeds... [0.206s] Searching alignments... [36.827s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 2/2, index chunk 2/4. Building reference seed array... [10.032s] Building query seed array... [2.888s] Computing hash join... [5.317s] Masking low complexity seeds... [0.289s] Searching alignments... [29.659s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 2/2, index chunk 3/4. Building reference seed array... [10.86s] Building query seed array... [2.82s] Computing hash join... [5.243s] Masking low complexity seeds... [0.278s] Searching alignments... [32.89s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 2/2, index chunk 4/4. Building reference seed array... [8.34s] Building query seed array... [2.464s] Computing hash join... [5.25s] Masking low complexity seeds... [0.206s] Searching alignments... [28.606s] Deallocating memory... [0s] Deallocating buffers... [1.198s] Clearing query masking... [1.861s] Opening temporary output file... [0.003s] Computing alignments... Loading trace points... [6.056s] Sorting trace points... [1.246s] Computing alignments... [29.428s] Deallocating buffers... [0.013s] Loading trace points... [0.068s] Sorting trace points... [1.125s] Computing alignments... [29.209s] Deallocating buffers... [0.028s] Loading trace points... [0.041s] Sorting trace points... [1.133s] Computing alignments... [29.137s] Deallocating buffers... [0.013s] Loading trace points... [0.06s] Sorting trace points... [1.13s] Computing alignments... [29.1s] Deallocating buffers... [0.015s] Loading trace points... [0.097s] Sorting trace points... [1.152s] Computing alignments... [29.027s] Deallocating buffers... [0.015s] Loading trace points... [0.057s] Sorting trace points... [1.258s] Computing alignments... [29.347s] Deallocating buffers... [0.043s] Loading trace points... [0.001s] Sorting trace points... [1.141s] Computing alignments... [29.138s] Deallocating buffers... [0.013s] Loading trace points... [0.064s] Sorting trace points... [0.853s] Computing alignments... [28.968s] Deallocating buffers... [0.013s] Loading trace points... [0.057s] Sorting trace points... [1.135s] Computing alignments... [29.795s] Deallocating buffers... [0.012s] Loading trace points... [0.64s] Sorting trace points... [0.953s] Computing alignments... [30.598s] Deallocating buffers... [0.015s] Loading trace points... [0.045s] Sorting trace points... [1.168s] Computing alignments... [30.713s] Deallocating buffers... [0.016s] Loading trace points... [0.062s] Sorting trace points... [0.861s] Computing alignments... [30.597s] Deallocating buffers... [0.014s] Loading trace points... [0.065s] Sorting trace points... [1.159s] Computing alignments... [30.568s] Deallocating buffers... [0.013s] Loading trace points... [0.059s] Sorting trace points... [1.193s] Computing alignments... [30.524s] Deallocating buffers... [0.016s] Loading trace points... [0.051s] Sorting trace points... [1.19s] Computing alignments... [30.541s] Deallocating buffers... [0.013s] Loading trace points... [0s] Sorting trace points... [1.221s] Computing alignments... [30.26s] Deallocating buffers... [0.022s] Loading trace points... [0s] [502.823s] Deallocating reference... [0.049s] Loading reference sequences... [0.081s] Deallocating buffers... [0s] Joining output blocks... Joining output blocks... [2559.28s] [2559.32s] Deallocating queries... [0.094s] Loading query sequences... [0s] Closing the input file... [0s] Closing the output file... Loading dictionary... [3.865s] [4.967s] Closing the database... [0s] Cleaning up... [0s] Total time = 20889.5s Reported 2863169762 pairwise alignments, 2863169762 HSPs. 15825951 queries aligned. DIAMOND BLASTx on /gscratch/srlab/sam/data/P_verrucosa/RNAseq/E10_R1.fastp-trim.20230215.fq.gz complete: E10_R1.blastx.meganized.daa Now MEGANizing E10_R1.blastx.meganized.daa Version MEGAN Community Edition (version 6.22.0, built 19 Feb 2022) Author(s) Daniel H. Huson Copyright (C) 2022 Daniel H. Huson. This program comes with ABSOLUTELY NO WARRANTY. Java version: 17.0.2 Functional classifications to use: EC, EGGNOG, GTDB, INTERPRO2GO, SEED Loading ncbi.map: 2,396,736 Loading ncbi.tre: 2,396,740 Loading ec.map: 8,200 Loading ec.tre: 8,204 Loading eggnog.map: 30,875 Loading eggnog.tre: 30,986 Loading gtdb.map: 240,103 Loading gtdb.tre: 240,107 Loading interpro2go.map: 14,242 Loading interpro2go.tre: 28,907 Loading seed.map: 961 Loading seed.tre: 962 Meganizing: E10_R1.blastx.meganized.daa Meganizing init Annotating DAA file using FAST mode (accession database and first accession per line) Annotating references 10% 20% 30% 40% 50% 60% 70% 100% (569.5s) Writing 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (1.3s) Binning reads Initializing... Initializing binning... Using 'Naive LCA' algorithm for binning: Taxonomy Using Best-Hit algorithm for binning: SEED Using Best-Hit algorithm for binning: EGGNOG Using 'Naive LCA' algorithm for binning: GTDB Using Best-Hit algorithm for binning: EC Using Best-Hit algorithm for binning: INTERPRO2GO Binning reads... Binning reads Analyzing alignments 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (5,541.7s) Total reads: 15,825,951 With hits: 15,825,951 Alignments: 2,859,006,419 Assig. Taxonomy: 14,983,543 Assig. SEED: 128,258 Assig. EGGNOG: 69,939 Assig. GTDB: 488,437 Assig. EC: 2,715,362 Assig. INTERPRO2GO: 1,441,607 MinSupport set to: 7912 Binning reads Applying min-support & disabled filter to Taxonomy... 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (0.3s) Min-supp. changes: 4,117 Binning reads Applying min-support & disabled filter to GTDB... 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (14.2s) Min-supp. changes: 3,280 Binning reads Writing classification tables 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (53.8s) Binning reads Syncing 100% (0.3s) Class. Taxonomy: 61 Class. SEED: 511 Class. EGGNOG: 1,842 Class. GTDB: 19 Class. EC: 2,450 Class. INTERPRO2GO: 8,114 Total time: 6,189s Peak memory: 35.4 of 195.3G MEGANization of E10_R1.blastx.meganized.daa completed. Generating MD5 checksum for /gscratch/srlab/sam/data/P_verrucosa/RNAseq/E10_R2.fastp-trim.20230215.fq.gz... 7a996bdb3505afcbafa01de5508d9009 /gscratch/srlab/sam/data/P_verrucosa/RNAseq/E10_R2.fastp-trim.20230215.fq.gz Running DIAMOND BLASTx on /gscratch/srlab/sam/data/P_verrucosa/RNAseq/E10_R2.fastp-trim.20230215.fq.gz. diamond v2.1.1.155 (C) Max Planck Society for the Advancement of Science Documentation, support and updates available at http://www.diamondsearch.org Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021) #CPU threads: 40 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: Percentage range of top alignment score to report hits: 5 Opening the database... [0.316s] Database: /gscratch/srlab/blastdbs/20230215-ncbi-nr/20230215-ncbi-nr.dmnd (type: Diamond database, sequences: 526308523, letters: 207134680681) Block size = 15000000000 Opening the input file... [0.75s] Opening the output file... [1.138s] Loading query sequences... [89.908s] Masking queries... [22.677s] Algorithm: Double-indexed Building query histograms... [22.084s] Loading reference sequences... [29.413s] Masking reference... [32.118s] Initializing dictionary... [0.08s] Initializing temporary storage... [0.007s] Building reference histograms... [32.418s] Allocating buffers... [0.001s] Processing query block 1, reference block 1/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.439s] Building query seed array... [2.6s] Computing hash join... [7.171s] Masking low complexity seeds... [0.283s] Searching alignments... [88.523s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.699s] Building query seed array... [3.351s] Computing hash join... [7.06s] Masking low complexity seeds... [0.316s] Searching alignments... [56.895s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.74s] Building query seed array... [3.32s] Computing hash join... [6.901s] Masking low complexity seeds... [0.301s] Searching alignments... [50.752s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.494s] Building query seed array... [2.761s] Computing hash join... [6.695s] Masking low complexity seeds... [0.284s] Searching alignments... [44.403s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.267s] Building query seed array... [2.414s] Computing hash join... [6.466s] Masking low complexity seeds... [0.286s] Searching alignments... [49.22s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 2/2, index chunk 2/4. Building reference seed array... [13.161s] Building query seed array... [2.955s] Computing hash join... [7.223s] Masking low complexity seeds... [0.255s] Searching alignments... [37.913s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.205s] Building query seed array... [2.863s] Computing hash join... [6.606s] Masking low complexity seeds... [0.252s] Searching alignments... [43.28s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.673s] Building query seed array... [2.438s] Computing hash join... [6.369s] Masking low complexity seeds... [0.27s] Searching alignments... [36.214s] Deallocating memory... [0s] Deallocating buffers... [1.873s] Clearing query masking... [2.001s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [7.33s] Sorting trace points... [1.438s] Computing alignments... [36.145s] Deallocating buffers... [0.016s] Loading trace points... [0.067s] Sorting trace points... [0.996s] Computing alignments... [36.087s] Deallocating buffers... [0.017s] Loading trace points... [0.001s] Sorting trace points... [1.435s] Computing alignments... [36.39s] Deallocating buffers... [0.019s] Loading trace points... [0.045s] Sorting trace points... [1.474s] Computing alignments... [35.934s] Deallocating buffers... [0.148s] Loading trace points... [0.442s] Sorting trace points... [1.449s] Computing alignments... [36.204s] Deallocating buffers... [0.024s] Loading trace points... [0.123s] Sorting trace points... [1.463s] Computing alignments... [36.022s] Deallocating buffers... [0.015s] Loading trace points... [0.078s] Sorting trace points... [1.062s] Computing alignments... [36.44s] Deallocating buffers... [0.017s] Loading trace points... [0.066s] Sorting trace points... [1.187s] Computing alignments... [35.657s] Deallocating buffers... [0.018s] Loading trace points... [0.085s] Sorting trace points... [1.468s] Computing alignments... [37.781s] Deallocating buffers... [0.016s] Loading trace points... [0.001s] Sorting trace points... [1.211s] Computing alignments... [39.159s] Deallocating buffers... [0.019s] Loading trace points... [0.084s] Sorting trace points... [1.56s] Computing alignments... [39.389s] Deallocating buffers... [0.016s] Loading trace points... [0.05s] Sorting trace points... [1.608s] Computing alignments... [39.378s] Deallocating buffers... [0.17s] Loading trace points... [0.062s] Sorting trace points... [1.33s] Computing alignments... [39.046s] Deallocating buffers... [0.017s] Loading trace points... [0.05s] Sorting trace points... [1.494s] Computing alignments... [39.195s] Deallocating buffers... [0.016s] Loading trace points... [0.041s] Sorting trace points... [1.464s] Computing alignments... [39.578s] Deallocating buffers... [0.017s] Loading trace points... [0s] Sorting trace points... [1.102s] Computing alignments... [39.048s] Deallocating buffers... [0.019s] Loading trace points... [0s] [632.436s] Deallocating reference... [0.058s] Loading reference sequences... [29.33s] Masking reference... [30.942s] Initializing dictionary... [0.077s] Initializing temporary storage... [0.007s] Building reference histograms... [32.66s] Allocating buffers... [0.001s] Processing query block 1, reference block 2/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.224s] Building query seed array... [2.509s] Computing hash join... [7.33s] Masking low complexity seeds... [0.269s] Searching alignments... [84.987s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.674s] Building query seed array... [3.683s] Computing hash join... [6.828s] Masking low complexity seeds... [0.276s] Searching alignments... [54.254s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.675s] Building query seed array... [3.259s] Computing hash join... [7.134s] Masking low complexity seeds... [0.264s] Searching alignments... [49.653s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.681s] Building query seed array... [2.776s] Computing hash join... [7.02s] Masking low complexity seeds... [0.289s] Searching alignments... [44.628s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.753s] Building query seed array... [2.573s] Computing hash join... [6.59s] Masking low complexity seeds... [0.256s] Searching alignments... [49.194s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.781s] Building query seed array... [2.681s] Computing hash join... [6.535s] Masking low complexity seeds... [0.248s] Searching alignments... [36.766s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 2/2, index chunk 3/4. Building reference seed array... [14.094s] Building query seed array... [3.194s] Computing hash join... [6.52s] Masking low complexity seeds... [0.248s] Searching alignments... [40.761s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.134s] Building query seed array... [2.431s] Computing hash join... [6.439s] Masking low complexity seeds... [0.376s] Searching alignments... [34.426s] Deallocating memory... [0s] Deallocating buffers... [1.914s] Clearing query masking... [1.895s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [7.286s] Sorting trace points... [1.494s] Computing alignments... [35.929s] Deallocating buffers... [0.015s] Loading trace points... [0.082s] Sorting trace points... [1.425s] Computing alignments... [35.886s] Deallocating buffers... [0.131s] Loading trace points... [0.076s] Sorting trace points... [1.06s] Computing alignments... [36.237s] Deallocating buffers... [0.017s] Loading trace points... [0.469s] Sorting trace points... [1.483s] Computing alignments... [35.788s] Deallocating buffers... [0.018s] Loading trace points... [0.101s] Sorting trace points... [1.344s] Computing alignments... [36.023s] Deallocating buffers... [0.022s] Loading trace points... [0.087s] Sorting trace points... [1.425s] Computing alignments... [35.938s] Deallocating buffers... [0.015s] Loading trace points... [0.074s] Sorting trace points... [1.444s] Computing alignments... [36.415s] Deallocating buffers... [0.12s] Loading trace points... [0.073s] Sorting trace points... [1.361s] Computing alignments... [35.682s] Deallocating buffers... [0.019s] Loading trace points... [0.076s] Sorting trace points... [1.48s] Computing alignments... [37.621s] Deallocating buffers... [0.019s] Loading trace points... [0.085s] Sorting trace points... [1.394s] Computing alignments... [39.006s] Deallocating buffers... [0.02s] Loading trace points... [0.107s] Sorting trace points... [1.077s] Computing alignments... [39.277s] Deallocating buffers... [0.019s] Loading trace points... [0.051s] Sorting trace points... [1.504s] Computing alignments... [39.043s] Deallocating buffers... [0.021s] Loading trace points... [0.049s] Sorting trace points... [1.086s] Computing alignments... [38.713s] Deallocating buffers... [0.019s] Loading trace points... [0.075s] Sorting trace points... [1.463s] Computing alignments... [38.788s] Deallocating buffers... [0.016s] Loading trace points... [0.077s] Sorting trace points... [1.583s] Computing alignments... [39.337s] Deallocating buffers... [0.172s] Loading trace points... [0s] Sorting trace points... [1.504s] Computing alignments... [38.861s] Deallocating buffers... [0.016s] Loading trace points... [0s] [631.215s] Deallocating reference... [0.061s] Loading reference sequences... [29.127s] Masking reference... [32.143s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.007s] Building reference histograms... [32.599s] Allocating buffers... [0.001s] Processing query block 1, reference block 3/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.153s] Building query seed array... [2.465s] Computing hash join... [7.28s] Masking low complexity seeds... [0.275s] Searching alignments... [86.093s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.721s] Building query seed array... [3.645s] Computing hash join... [7.016s] Masking low complexity seeds... [0.309s] Searching alignments... [56.286s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.416s] Building query seed array... [3.345s] Computing hash join... [6.861s] Masking low complexity seeds... [0.278s] Searching alignments... [52.4s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.59s] Building query seed array... [2.683s] Computing hash join... [6.882s] Masking low complexity seeds... [0.275s] Searching alignments... [45.865s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.62s] Building query seed array... [2.58s] Computing hash join... [6.412s] Masking low complexity seeds... [0.299s] Searching alignments... [51.366s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.621s] Building query seed array... [2.826s] Computing hash join... [6.882s] Masking low complexity seeds... [0.253s] Searching alignments... [37.305s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.798s] Building query seed array... [3.036s] Computing hash join... [6.718s] Masking low complexity seeds... [0.258s] Searching alignments... [42.789s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.53s] Building query seed array... [2.402s] Computing hash join... [6.43s] Masking low complexity seeds... [0.369s] Searching alignments... [34.725s] Deallocating memory... [0s] Deallocating buffers... [1.884s] Clearing query masking... [1.916s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [7.413s] Sorting trace points... [1.459s] Computing alignments... [35.956s] Deallocating buffers... [0.016s] Loading trace points... [0.075s] Sorting trace points... [1.383s] Computing alignments... [35.777s] Deallocating buffers... [0.015s] Loading trace points... [0.001s] Sorting trace points... [1.356s] Computing alignments... [36.214s] Deallocating buffers... [0.019s] Loading trace points... [0.108s] Sorting trace points... [1.089s] Computing alignments... [35.623s] Deallocating buffers... [0.017s] Loading trace points... [0.048s] Sorting trace points... [1.115s] Computing alignments... [35.961s] Deallocating buffers... [0.024s] Loading trace points... [0.079s] Sorting trace points... [1.448s] Computing alignments... [35.976s] Deallocating buffers... [0.047s] Loading trace points... [0.083s] Sorting trace points... [1.147s] Computing alignments... [36.407s] Deallocating buffers... [0.017s] Loading trace points... [0.07s] Sorting trace points... [1.073s] Computing alignments... [35.737s] Deallocating buffers... [0.016s] Loading trace points... [0.065s] Sorting trace points... [1.426s] Computing alignments... [37.648s] Deallocating buffers... [0.019s] Loading trace points... [0.109s] Sorting trace points... [1.469s] Computing alignments... [38.941s] Deallocating buffers... [0.016s] Loading trace points... [0.083s] Sorting trace points... [1.534s] Computing alignments... [39.264s] Deallocating buffers... [0.017s] Loading trace points... [0.048s] Sorting trace points... [1.508s] Computing alignments... [39.055s] Deallocating buffers... [0.02s] Loading trace points... [0.057s] Sorting trace points... [1.457s] Computing alignments... [38.859s] Deallocating buffers... [0.016s] Loading trace points... [0.001s] Sorting trace points... [1.183s] Computing alignments... [38.987s] Deallocating buffers... [0.019s] Loading trace points... [0.812s] Sorting trace points... [1.549s] Computing alignments... [39.347s] Deallocating buffers... [0.017s] Loading trace points... [0s] Sorting trace points... [1.135s] Computing alignments... [38.812s] Deallocating buffers... [0.019s] Loading trace points... [0s] [629.458s] Deallocating reference... [0.06s] Loading reference sequences... [33.201s] Masking reference... [31.249s] Initializing dictionary... [0.077s] Initializing temporary storage... [0.008s] Building reference histograms... [31.704s] Allocating buffers... [0s] Processing query block 1, reference block 4/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.209s] Building query seed array... [2.463s] Computing hash join... [7.246s] Masking low complexity seeds... [0.268s] Searching alignments... [83.632s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.47s] Building query seed array... [3.682s] Computing hash join... [6.879s] Masking low complexity seeds... [0.273s] Searching alignments... [54.45s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.542s] Building query seed array... [3.197s] Computing hash join... [7.12s] Masking low complexity seeds... [0.275s] Searching alignments... [51.073s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.573s] Building query seed array... [2.93s] Computing hash join... [6.702s] Masking low complexity seeds... [0.31s] Searching alignments... [44.732s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.546s] Building query seed array... [2.494s] Computing hash join... [6.767s] Masking low complexity seeds... [0.292s] Searching alignments... [50.507s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.583s] Building query seed array... [3.017s] Computing hash join... [6.548s] Masking low complexity seeds... [0.349s] Searching alignments... [38.061s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.68s] Building query seed array... [2.876s] Computing hash join... [6.666s] Masking low complexity seeds... [0.332s] Searching alignments... [43.286s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.925s] Building query seed array... [2.511s] Computing hash join... [6.249s] Masking low complexity seeds... [0.266s] Searching alignments... [35.549s] Deallocating memory... [0s] Deallocating buffers... [1.999s] Clearing query masking... [1.92s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [7.115s] Sorting trace points... [1.473s] Computing alignments... [35.91s] Deallocating buffers... [0.015s] Loading trace points... [0.07s] Sorting trace points... [1.139s] Computing alignments... [35.788s] Deallocating buffers... [0.017s] Loading trace points... [0.088s] Sorting trace points... [1.412s] Computing alignments... [36.269s] Deallocating buffers... [0.015s] Loading trace points... [0.001s] Sorting trace points... [1.031s] Computing alignments... [35.628s] Deallocating buffers... [0.018s] Loading trace points... [0.071s] Sorting trace points... [0.979s] Computing alignments... [35.99s] Deallocating buffers... [0.025s] Loading trace points... [0.126s] Sorting trace points... [1.41s] Computing alignments... [35.928s] Deallocating buffers... [0.015s] Loading trace points... [0.075s] Sorting trace points... [1.071s] Computing alignments... [36.333s] Deallocating buffers... [0.017s] Loading trace points... [0.069s] Sorting trace points... [0.969s] Computing alignments... [35.754s] Deallocating buffers... [0.016s] Loading trace points... [0.061s] Sorting trace points... [1.451s] Computing alignments... [37.67s] Deallocating buffers... [0.016s] Loading trace points... [0.097s] Sorting trace points... [1.55s] Computing alignments... [39.04s] Deallocating buffers... [0.029s] Loading trace points... [0.743s] Sorting trace points... [1.576s] Computing alignments... [39.301s] Deallocating buffers... [0.02s] Loading trace points... [0.041s] Sorting trace points... [1.641s] Computing alignments... [38.985s] Deallocating buffers... [0.115s] Loading trace points... [0.066s] Sorting trace points... [1.584s] Computing alignments... [38.622s] Deallocating buffers... [0.02s] Loading trace points... [0.337s] Sorting trace points... [1.654s] Computing alignments... [38.809s] Deallocating buffers... [0.107s] Loading trace points... [0.001s] Sorting trace points... [1.498s] Computing alignments... [39.152s] Deallocating buffers... [0.02s] Loading trace points... [0s] Sorting trace points... [1.599s] Computing alignments... [38.655s] Deallocating buffers... [0.148s] Loading trace points... [0s] [629.643s] Deallocating reference... [0.063s] Loading reference sequences... [29.318s] Masking reference... [30.883s] Initializing dictionary... [0.077s] Initializing temporary storage... [0.007s] Building reference histograms... [33.118s] Allocating buffers... [0s] Processing query block 1, reference block 5/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.591s] Building query seed array... [2.459s] Computing hash join... [6.995s] Masking low complexity seeds... [0.266s] Searching alignments... [84.911s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 1/2, index chunk 2/4. Building reference seed array... [13.146s] Building query seed array... [3.548s] Computing hash join... [6.426s] Masking low complexity seeds... [0.291s] Searching alignments... [56.336s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 1/2, index chunk 3/4. Building reference seed array... [14.068s] Building query seed array... [3.261s] Computing hash join... [6.502s] Masking low complexity seeds... [0.261s] Searching alignments... [50.194s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 1/2, index chunk 4/4. Building reference seed array... [11.179s] Building query seed array... [2.803s] Computing hash join... [6.309s] Masking low complexity seeds... [0.3s] Searching alignments... [43.671s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.57s] Building query seed array... [2.482s] Computing hash join... [6.036s] Masking low complexity seeds... [0.303s] Searching alignments... [48.556s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 2/2, index chunk 2/4. Building reference seed array... [13.005s] Building query seed array... [2.852s] Computing hash join... [6.275s] Masking low complexity seeds... [0.271s] Searching alignments... [37.863s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 2/2, index chunk 3/4. Building reference seed array... [14.097s] Building query seed array... [3.034s] Computing hash join... [6.074s] Masking low complexity seeds... [0.272s] Searching alignments... [40.532s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.837s] Building query seed array... [2.472s] Computing hash join... [5.785s] Masking low complexity seeds... [0.241s] Searching alignments... [35.818s] Deallocating memory... [0s] Deallocating buffers... [2.699s] Clearing query masking... [1.834s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [7.071s] Sorting trace points... [1.48s] Computing alignments... [35.872s] Deallocating buffers... [0.017s] Loading trace points... [0.874s] Sorting trace points... [1.586s] Computing alignments... [36.021s] Deallocating buffers... [0.31s] Loading trace points... [0.07s] Sorting trace points... [1.426s] Computing alignments... [36.349s] Deallocating buffers... [0.016s] Loading trace points... [0s] Sorting trace points... [1.472s] Computing alignments... [35.76s] Deallocating buffers... [0.211s] Loading trace points... [0.041s] Sorting trace points... [1.147s] Computing alignments... [36.021s] Deallocating buffers... [0.025s] Loading trace points... [0.088s] Sorting trace points... [1.157s] Computing alignments... [35.712s] Deallocating buffers... [0.016s] Loading trace points... [0.077s] Sorting trace points... [1.295s] Computing alignments... [36.226s] Deallocating buffers... [0.016s] Loading trace points... [0.06s] Sorting trace points... [1.249s] Computing alignments... [35.526s] Deallocating buffers... [0.016s] Loading trace points... [0.078s] Sorting trace points... [1.223s] Computing alignments... [37.446s] Deallocating buffers... [0.019s] Loading trace points... [0.814s] Sorting trace points... [1.664s] Computing alignments... [38.917s] Deallocating buffers... [0.108s] Loading trace points... [0.056s] Sorting trace points... [1.572s] Computing alignments... [39.07s] Deallocating buffers... [0.017s] Loading trace points... [0.047s] Sorting trace points... [1.329s] Computing alignments... [38.992s] Deallocating buffers... [0.018s] Loading trace points... [0.045s] Sorting trace points... [1.349s] Computing alignments... [38.596s] Deallocating buffers... [0.017s] Loading trace points... [0.086s] Sorting trace points... [1.517s] Computing alignments... [38.726s] Deallocating buffers... [0.02s] Loading trace points... [0.071s] Sorting trace points... [1.639s] Computing alignments... [39.171s] Deallocating buffers... [0.189s] Loading trace points... [0s] Sorting trace points... [1.472s] Computing alignments... [38.742s] Deallocating buffers... [0.021s] Loading trace points... [0s] [630.439s] Deallocating reference... [0.056s] Loading reference sequences... [29.497s] Masking reference... [32.095s] Initializing dictionary... [0.077s] Initializing temporary storage... [0.008s] Building reference histograms... [32.642s] Allocating buffers... [0s] Processing query block 1, reference block 6/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.45s] Building query seed array... [2.494s] Computing hash join... [7.027s] Masking low complexity seeds... [0.268s] Searching alignments... [84.16s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.991s] Building query seed array... [3.528s] Computing hash join... [6.972s] Masking low complexity seeds... [0.262s] Searching alignments... [54.7s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.949s] Building query seed array... [3.326s] Computing hash join... [7.009s] Masking low complexity seeds... [0.28s] Searching alignments... [50.599s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.985s] Building query seed array... [2.665s] Computing hash join... [6.451s] Masking low complexity seeds... [0.27s] Searching alignments... [43.953s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.681s] Building query seed array... [2.47s] Computing hash join... [6.409s] Masking low complexity seeds... [0.31s] Searching alignments... [47.566s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.623s] Building query seed array... [2.794s] Computing hash join... [6.914s] Masking low complexity seeds... [0.264s] Searching alignments... [36.659s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 2/2, index chunk 3/4. Building reference seed array... [14.38s] Building query seed array... [3.026s] Computing hash join... [7.047s] Masking low complexity seeds... [0.319s] Searching alignments... [39.452s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.696s] Building query seed array... [2.535s] Computing hash join... [7.021s] Masking low complexity seeds... [0.246s] Searching alignments... [34.735s] Deallocating memory... [0s] Deallocating buffers... [2.324s] Clearing query masking... [1.896s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [7.899s] Sorting trace points... [1.492s] Computing alignments... [35.614s] Deallocating buffers... [0.017s] Loading trace points... [0.069s] Sorting trace points... [1.347s] Computing alignments... [35.498s] Deallocating buffers... [0.015s] Loading trace points... [0.074s] Sorting trace points... [1.412s] Computing alignments... [35.927s] Deallocating buffers... [0.015s] Loading trace points... [0.074s] Sorting trace points... [1.188s] Computing alignments... [35.502s] Deallocating buffers... [0.018s] Loading trace points... [0.087s] Sorting trace points... [1.361s] Computing alignments... [35.793s] Deallocating buffers... [0.022s] Loading trace points... [0.091s] Sorting trace points... [1.063s] Computing alignments... [35.718s] Deallocating buffers... [0.016s] Loading trace points... [0.09s] Sorting trace points... [1.353s] Computing alignments... [36.091s] Deallocating buffers... [0.019s] Loading trace points... [0.049s] Sorting trace points... [1.376s] Computing alignments... [35.333s] Deallocating buffers... [0.036s] Loading trace points... [0.052s] Sorting trace points... [1.195s] Computing alignments... [37.377s] Deallocating buffers... [0.018s] Loading trace points... [0.057s] Sorting trace points... [1.152s] Computing alignments... [38.7s] Deallocating buffers... [0.017s] Loading trace points... [0.074s] Sorting trace points... [1.526s] Computing alignments... [38.94s] Deallocating buffers... [0.033s] Loading trace points... [0.001s] Sorting trace points... [1.167s] Computing alignments... [38.74s] Deallocating buffers... [0.017s] Loading trace points... [0.04s] Sorting trace points... [1.402s] Computing alignments... [38.656s] Deallocating buffers... [0.017s] Loading trace points... [0.084s] Sorting trace points... [1.354s] Computing alignments... [38.589s] Deallocating buffers... [0.017s] Loading trace points... [0.094s] Sorting trace points... [1.56s] Computing alignments... [38.864s] Deallocating buffers... [0.016s] Loading trace points... [0s] Sorting trace points... [1.581s] Computing alignments... [38.456s] Deallocating buffers... [0.129s] Loading trace points... [0s] [624.801s] Deallocating reference... [0.075s] Loading reference sequences... [29.476s] Masking reference... [32.175s] Initializing dictionary... [0.076s] Initializing temporary storage... [0.008s] Building reference histograms... [32.151s] Allocating buffers... [0s] Processing query block 1, reference block 7/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.027s] Building query seed array... [2.499s] Computing hash join... [7.267s] Masking low complexity seeds... [0.267s] Searching alignments... [85.618s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.697s] Building query seed array... [3.649s] Computing hash join... [6.408s] Masking low complexity seeds... [0.282s] Searching alignments... [55.544s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.421s] Building query seed array... [3.397s] Computing hash join... [6.604s] Masking low complexity seeds... [0.315s] Searching alignments... [50.4s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.635s] Building query seed array... [2.691s] Computing hash join... [7.187s] Masking low complexity seeds... [0.268s] Searching alignments... [45.237s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.677s] Building query seed array... [2.391s] Computing hash join... [6.669s] Masking low complexity seeds... [0.263s] Searching alignments... [49.866s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 2/2, index chunk 2/4. Building reference seed array... [13s] Building query seed array... [2.838s] Computing hash join... [6.911s] Masking low complexity seeds... [0.255s] Searching alignments... [38.669s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.949s] Building query seed array... [2.955s] Computing hash join... [6.987s] Masking low complexity seeds... [0.257s] Searching alignments... [43.983s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.339s] Building query seed array... [2.426s] Computing hash join... [6.335s] Masking low complexity seeds... [0.25s] Searching alignments... [35.497s] Deallocating memory... [0s] Deallocating buffers... [2.337s] Clearing query masking... [1.896s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [7.06s] Sorting trace points... [1.411s] Computing alignments... [36.767s] Deallocating buffers... [0.018s] Loading trace points... [0.091s] Sorting trace points... [1.409s] Computing alignments... [35.675s] Deallocating buffers... [0.015s] Loading trace points... [0.001s] Sorting trace points... [1.401s] Computing alignments... [36.235s] Deallocating buffers... [0.02s] Loading trace points... [0.058s] Sorting trace points... [1.374s] Computing alignments... [35.659s] Deallocating buffers... [0.015s] Loading trace points... [0.036s] Sorting trace points... [1.411s] Computing alignments... [36.064s] Deallocating buffers... [0.044s] Loading trace points... [0.097s] Sorting trace points... [1.427s] Computing alignments... [36.021s] Deallocating buffers... [0.015s] Loading trace points... [0.101s] Sorting trace points... [1.11s] Computing alignments... [36.341s] Deallocating buffers... [0.017s] Loading trace points... [0.047s] Sorting trace points... [0.966s] Computing alignments... [35.622s] Deallocating buffers... [0.016s] Loading trace points... [0.064s] Sorting trace points... [1.206s] Computing alignments... [37.504s] Deallocating buffers... [0.019s] Loading trace points... [0s] Sorting trace points... [1.221s] Computing alignments... [38.834s] Deallocating buffers... [0.017s] Loading trace points... [0.303s] Sorting trace points... [1.662s] Computing alignments... [39.321s] Deallocating buffers... [0.017s] Loading trace points... [0.053s] Sorting trace points... [1.247s] Computing alignments... [39.134s] Deallocating buffers... [0.019s] Loading trace points... [0.056s] Sorting trace points... [1.129s] Computing alignments... [38.939s] Deallocating buffers... [0.018s] Loading trace points... [0.001s] Sorting trace points... [1.476s] Computing alignments... [38.898s] Deallocating buffers... [0.016s] Loading trace points... [0.002s] Sorting trace points... [1.45s] Computing alignments... [39.375s] Deallocating buffers... [0.017s] Loading trace points... [0s] Sorting trace points... [1.079s] Computing alignments... [38.888s] Deallocating buffers... [0.018s] Loading trace points... [0s] [628.77s] Deallocating reference... [0.057s] Loading reference sequences... [29.481s] Masking reference... [30.899s] Initializing dictionary... [0.077s] Initializing temporary storage... [0.008s] Building reference histograms... [33.046s] Allocating buffers... [0s] Processing query block 1, reference block 8/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.29s] Building query seed array... [2.359s] Computing hash join... [7.447s] Masking low complexity seeds... [0.266s] Searching alignments... [86.792s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 1/2, index chunk 2/4. Building reference seed array... [13.186s] Building query seed array... [3.626s] Computing hash join... [7.017s] Masking low complexity seeds... [0.267s] Searching alignments... [57.445s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 1/2, index chunk 3/4. Building reference seed array... [14.133s] Building query seed array... [3.428s] Computing hash join... [7.382s] Masking low complexity seeds... [0.336s] Searching alignments... [50.312s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.989s] Building query seed array... [2.754s] Computing hash join... [6.934s] Masking low complexity seeds... [0.311s] Searching alignments... [44.041s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.32s] Building query seed array... [2.42s] Computing hash join... [6.946s] Masking low complexity seeds... [0.262s] Searching alignments... [48.421s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.822s] Building query seed array... [2.844s] Computing hash join... [6.53s] Masking low complexity seeds... [0.284s] Searching alignments... [38.31s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.918s] Building query seed array... [2.962s] Computing hash join... [6.468s] Masking low complexity seeds... [0.287s] Searching alignments... [42.36s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.315s] Building query seed array... [2.513s] Computing hash join... [6.463s] Masking low complexity seeds... [0.288s] Searching alignments... [35.029s] Deallocating memory... [0s] Deallocating buffers... [2.357s] Clearing query masking... [2.023s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [7.322s] Sorting trace points... [1.524s] Computing alignments... [35.73s] Deallocating buffers... [0.052s] Loading trace points... [0.091s] Sorting trace points... [1.477s] Computing alignments... [35.738s] Deallocating buffers... [0.19s] Loading trace points... [0.075s] Sorting trace points... [1.424s] Computing alignments... [36.168s] Deallocating buffers... [0.015s] Loading trace points... [0.073s] Sorting trace points... [1.365s] Computing alignments... [35.648s] Deallocating buffers... [0.015s] Loading trace points... [0.055s] Sorting trace points... [1.202s] Computing alignments... [36.074s] Deallocating buffers... [0.14s] Loading trace points... [0.14s] Sorting trace points... [1.354s] Computing alignments... [35.834s] Deallocating buffers... [0.018s] Loading trace points... [0.093s] Sorting trace points... [1.148s] Computing alignments... [36.221s] Deallocating buffers... [0.016s] Loading trace points... [0.068s] Sorting trace points... [1.471s] Computing alignments... [35.527s] Deallocating buffers... [0.053s] Loading trace points... [0.058s] Sorting trace points... [1.444s] Computing alignments... [37.555s] Deallocating buffers... [0.016s] Loading trace points... [0.001s] Sorting trace points... [1.534s] Computing alignments... [38.966s] Deallocating buffers... [0.017s] Loading trace points... [0.074s] Sorting trace points... [1.591s] Computing alignments... [39.223s] Deallocating buffers... [0.191s] Loading trace points... [0.06s] Sorting trace points... [1.545s] Computing alignments... [39.05s] Deallocating buffers... [0.017s] Loading trace points... [0.073s] Sorting trace points... [1.657s] Computing alignments... [38.844s] Deallocating buffers... [0.059s] Loading trace points... [0.037s] Sorting trace points... [1.534s] Computing alignments... [39.038s] Deallocating buffers... [0.017s] Loading trace points... [0.065s] Sorting trace points... [1.345s] Computing alignments... [39.459s] Deallocating buffers... [0.189s] Loading trace points... [0s] Sorting trace points... [1.413s] Computing alignments... [38.893s] Deallocating buffers... [0.02s] Loading trace points... [0s] [630.505s] Deallocating reference... [0.062s] Loading reference sequences... [31.995s] Masking reference... [31.546s] Initializing dictionary... [0.079s] Initializing temporary storage... [0.007s] Building reference histograms... [32.119s] Allocating buffers... [0s] Processing query block 1, reference block 9/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.006s] Building query seed array... [2.511s] Computing hash join... [7.451s] Masking low complexity seeds... [0.272s] Searching alignments... [86.052s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.578s] Building query seed array... [3.632s] Computing hash join... [7.075s] Masking low complexity seeds... [0.277s] Searching alignments... [56.076s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 1/2, index chunk 3/4. Building reference seed array... [14.445s] Building query seed array... [3.401s] Computing hash join... [7.164s] Masking low complexity seeds... [0.272s] Searching alignments... [51.761s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.7s] Building query seed array... [2.881s] Computing hash join... [6.579s] Masking low complexity seeds... [0.318s] Searching alignments... [43.541s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.913s] Building query seed array... [2.436s] Computing hash join... [6.955s] Masking low complexity seeds... [0.285s] Searching alignments... [47.648s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.774s] Building query seed array... [2.936s] Computing hash join... [6.985s] Masking low complexity seeds... [0.275s] Searching alignments... [36.964s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.907s] Building query seed array... [2.896s] Computing hash join... [7.006s] Masking low complexity seeds... [0.309s] Searching alignments... [41.852s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.414s] Building query seed array... [2.558s] Computing hash join... [6.322s] Masking low complexity seeds... [0.256s] Searching alignments... [35.24s] Deallocating memory... [0s] Deallocating buffers... [2.316s] Clearing query masking... [1.897s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [7.789s] Sorting trace points... [1.482s] Computing alignments... [35.601s] Deallocating buffers... [0.015s] Loading trace points... [0.07s] Sorting trace points... [1.33s] Computing alignments... [35.725s] Deallocating buffers... [0.015s] Loading trace points... [0.068s] Sorting trace points... [1.363s] Computing alignments... [36.185s] Deallocating buffers... [0.015s] Loading trace points... [0.119s] Sorting trace points... [1.376s] Computing alignments... [35.775s] Deallocating buffers... [0.018s] Loading trace points... [0.002s] Sorting trace points... [1.268s] Computing alignments... [36.048s] Deallocating buffers... [0.052s] Loading trace points... [0.111s] Sorting trace points... [1.309s] Computing alignments... [36.019s] Deallocating buffers... [0.015s] Loading trace points... [0.069s] Sorting trace points... [1.361s] Computing alignments... [36.358s] Deallocating buffers... [0.058s] Loading trace points... [0.057s] Sorting trace points... [1.358s] Computing alignments... [35.686s] Deallocating buffers... [0.115s] Loading trace points... [0.059s] Sorting trace points... [1.066s] Computing alignments... [37.765s] Deallocating buffers... [0.018s] Loading trace points... [0.075s] Sorting trace points... [1.395s] Computing alignments... [38.968s] Deallocating buffers... [0.017s] Loading trace points... [0.069s] Sorting trace points... [1.283s] Computing alignments... [39.249s] Deallocating buffers... [0.02s] Loading trace points... [0.067s] Sorting trace points... [1.174s] Computing alignments... [38.984s] Deallocating buffers... [0.019s] Loading trace points... [0.102s] Sorting trace points... [1.345s] Computing alignments... [38.696s] Deallocating buffers... [0.02s] Loading trace points... [0.091s] Sorting trace points... [1.753s] Computing alignments... [38.857s] Deallocating buffers... [0.214s] Loading trace points... [0.135s] Sorting trace points... [1.667s] Computing alignments... [39.153s] Deallocating buffers... [0.084s] Loading trace points... [0s] Sorting trace points... [1.534s] Computing alignments... [38.729s] Deallocating buffers... [0.132s] Loading trace points... [0s] [629.882s] Deallocating reference... [0.065s] Loading reference sequences... [29.118s] Masking reference... [30.956s] Initializing dictionary... [0.077s] Initializing temporary storage... [0.008s] Building reference histograms... [32.305s] Allocating buffers... [0s] Processing query block 1, reference block 10/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.291s] Building query seed array... [2.389s] Computing hash join... [7.315s] Masking low complexity seeds... [0.275s] Searching alignments... [86.738s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.591s] Building query seed array... [3.723s] Computing hash join... [6.665s] Masking low complexity seeds... [0.294s] Searching alignments... [55.927s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 1/2, index chunk 3/4. Building reference seed array... [14.477s] Building query seed array... [3.312s] Computing hash join... [6.591s] Masking low complexity seeds... [0.326s] Searching alignments... [51.444s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.848s] Building query seed array... [2.71s] Computing hash join... [7.448s] Masking low complexity seeds... [0.286s] Searching alignments... [45.678s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.255s] Building query seed array... [2.453s] Computing hash join... [6.731s] Masking low complexity seeds... [0.254s] Searching alignments... [50.521s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.786s] Building query seed array... [3.028s] Computing hash join... [6.992s] Masking low complexity seeds... [0.267s] Searching alignments... [37.2s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 2/2, index chunk 3/4. Building reference seed array... [14.179s] Building query seed array... [3.038s] Computing hash join... [7.19s] Masking low complexity seeds... [0.256s] Searching alignments... [41.134s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.433s] Building query seed array... [2.556s] Computing hash join... [6.876s] Masking low complexity seeds... [0.35s] Searching alignments... [35.295s] Deallocating memory... [0s] Deallocating buffers... [2.464s] Clearing query masking... [1.898s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [7.598s] Sorting trace points... [1.493s] Computing alignments... [36.289s] Deallocating buffers... [0.154s] Loading trace points... [0.066s] Sorting trace points... [1.355s] Computing alignments... [35.762s] Deallocating buffers... [0.018s] Loading trace points... [0.083s] Sorting trace points... [1.381s] Computing alignments... [36.138s] Deallocating buffers... [0.019s] Loading trace points... [0s] Sorting trace points... [1.37s] Computing alignments... [35.696s] Deallocating buffers... [0.019s] Loading trace points... [0.056s] Sorting trace points... [1.375s] Computing alignments... [35.813s] Deallocating buffers... [0.023s] Loading trace points... [0.088s] Sorting trace points... [1.454s] Computing alignments... [35.798s] Deallocating buffers... [0.018s] Loading trace points... [0.103s] Sorting trace points... [1.383s] Computing alignments... [36.114s] Deallocating buffers... [0.135s] Loading trace points... [0.074s] Sorting trace points... [1.303s] Computing alignments... [35.446s] Deallocating buffers... [0.015s] Loading trace points... [0.313s] Sorting trace points... [1.148s] Computing alignments... [37.567s] Deallocating buffers... [0.018s] Loading trace points... [0.08s] Sorting trace points... [1.217s] Computing alignments... [38.812s] Deallocating buffers... [0.019s] Loading trace points... [0.057s] Sorting trace points... [1.573s] Computing alignments... [39.126s] Deallocating buffers... [0.034s] Loading trace points... [0.654s] Sorting trace points... [1.713s] Computing alignments... [38.906s] Deallocating buffers... [0.15s] Loading trace points... [0.056s] Sorting trace points... [1.659s] Computing alignments... [38.573s] Deallocating buffers... [0.063s] Loading trace points... [0.087s] Sorting trace points... [1.647s] Computing alignments... [38.736s] Deallocating buffers... [0.152s] Loading trace points... [0.076s] Sorting trace points... [1.575s] Computing alignments... [39.096s] Deallocating buffers... [0.017s] Loading trace points... [0s] Sorting trace points... [1.608s] Computing alignments... [38.774s] Deallocating buffers... [0.265s] Loading trace points... [0s] [630.684s] Deallocating reference... [0.06s] Loading reference sequences... [31.285s] Masking reference... [30.918s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.007s] Building reference histograms... [32.108s] Allocating buffers... [0s] Processing query block 1, reference block 11/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.279s] Building query seed array... [2.444s] Computing hash join... [7.551s] Masking low complexity seeds... [0.267s] Searching alignments... [84.091s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 1/2, index chunk 2/4. Building reference seed array... [13.432s] Building query seed array... [3.919s] Computing hash join... [7.196s] Masking low complexity seeds... [0.306s] Searching alignments... [53.679s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 1/2, index chunk 3/4. Building reference seed array... [14.142s] Building query seed array... [3.332s] Computing hash join... [7.319s] Masking low complexity seeds... [0.263s] Searching alignments... [52.086s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.743s] Building query seed array... [2.902s] Computing hash join... [6.924s] Masking low complexity seeds... [0.302s] Searching alignments... [44.251s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.969s] Building query seed array... [2.504s] Computing hash join... [7.131s] Masking low complexity seeds... [0.252s] Searching alignments... [47.242s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 2/2, index chunk 2/4. Building reference seed array... [13.222s] Building query seed array... [2.765s] Computing hash join... [6.523s] Masking low complexity seeds... [0.287s] Searching alignments... [37.194s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 2/2, index chunk 3/4. Building reference seed array... [14.276s] Building query seed array... [2.899s] Computing hash join... [6.328s] Masking low complexity seeds... [0.288s] Searching alignments... [39.533s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.72s] Building query seed array... [2.508s] Computing hash join... [6.395s] Masking low complexity seeds... [0.312s] Searching alignments... [35.845s] Deallocating memory... [0s] Deallocating buffers... [2.578s] Clearing query masking... [1.928s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [7.377s] Sorting trace points... [1.405s] Computing alignments... [35.826s] Deallocating buffers... [0.069s] Loading trace points... [0.095s] Sorting trace points... [1.225s] Computing alignments... [35.548s] Deallocating buffers... [0.223s] Loading trace points... [0.99s] Sorting trace points... [1.377s] Computing alignments... [35.97s] Deallocating buffers... [0.018s] Loading trace points... [0.088s] Sorting trace points... [1.473s] Computing alignments... [35.48s] Deallocating buffers... [0.064s] Loading trace points... [0.088s] Sorting trace points... [1.358s] Computing alignments... [35.775s] Deallocating buffers... [0.027s] Loading trace points... [0.089s] Sorting trace points... [1.403s] Computing alignments... [35.7s] Deallocating buffers... [0.018s] Loading trace points... [0.079s] Sorting trace points... [1.482s] Computing alignments... [36.045s] Deallocating buffers... [0.125s] Loading trace points... [0.071s] Sorting trace points... [1.077s] Computing alignments... [35.448s] Deallocating buffers... [0.016s] Loading trace points... [0.045s] Sorting trace points... [1.203s] Computing alignments... [37.359s] Deallocating buffers... [0.017s] Loading trace points... [0.069s] Sorting trace points... [1.427s] Computing alignments... [38.665s] Deallocating buffers... [0.088s] Loading trace points... [0.055s] Sorting trace points... [1.657s] Computing alignments... [39.021s] Deallocating buffers... [0.172s] Loading trace points... [0.057s] Sorting trace points... [1.538s] Computing alignments... [38.972s] Deallocating buffers... [0.017s] Loading trace points... [0.062s] Sorting trace points... [1.145s] Computing alignments... [38.504s] Deallocating buffers... [0.018s] Loading trace points... [0.077s] Sorting trace points... [1.173s] Computing alignments... [38.518s] Deallocating buffers... [0.017s] Loading trace points... [0.115s] Sorting trace points... [1.551s] Computing alignments... [38.995s] Deallocating buffers... [0.021s] Loading trace points... [0s] Sorting trace points... [1.135s] Computing alignments... [38.592s] Deallocating buffers... [0.081s] Loading trace points... [0s] [626.629s] Deallocating reference... [0.057s] Loading reference sequences... [256.131s] Masking reference... [31.341s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.007s] Building reference histograms... [32.959s] Allocating buffers... [0s] Processing query block 1, reference block 12/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.374s] Building query seed array... [2.412s] Computing hash join... [7.536s] Masking low complexity seeds... [0.264s] Searching alignments... [86.215s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.852s] Building query seed array... [3.651s] Computing hash join... [7.257s] Masking low complexity seeds... [0.291s] Searching alignments... [56.627s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.781s] Building query seed array... [3.236s] Computing hash join... [7.096s] Masking low complexity seeds... [0.258s] Searching alignments... [50.972s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 1/2, index chunk 4/4. Building reference seed array... [11.14s] Building query seed array... [2.861s] Computing hash join... [6.72s] Masking low complexity seeds... [0.31s] Searching alignments... [44.398s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.295s] Building query seed array... [2.529s] Computing hash join... [6.772s] Masking low complexity seeds... [0.268s] Searching alignments... [49.392s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 2/2, index chunk 2/4. Building reference seed array... [13.015s] Building query seed array... [2.776s] Computing hash join... [6.309s] Masking low complexity seeds... [0.271s] Searching alignments... [37.005s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 2/2, index chunk 3/4. Building reference seed array... [14.015s] Building query seed array... [3.184s] Computing hash join... [6.411s] Masking low complexity seeds... [0.303s] Searching alignments... [40.591s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.978s] Building query seed array... [2.437s] Computing hash join... [6.301s] Masking low complexity seeds... [0.267s] Searching alignments... [35.824s] Deallocating memory... [0s] Deallocating buffers... [2.649s] Clearing query masking... [1.93s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [7.416s] Sorting trace points... [1.327s] Computing alignments... [35.861s] Deallocating buffers... [0.018s] Loading trace points... [0.105s] Sorting trace points... [1.358s] Computing alignments... [35.881s] Deallocating buffers... [0.032s] Loading trace points... [0.105s] Sorting trace points... [1.011s] Computing alignments... [36.396s] Deallocating buffers... [0.017s] Loading trace points... [0.001s] Sorting trace points... [1.38s] Computing alignments... [35.78s] Deallocating buffers... [0.018s] Loading trace points... [0.046s] Sorting trace points... [1.371s] Computing alignments... [36.161s] Deallocating buffers... [0.071s] Loading trace points... [0.098s] Sorting trace points... [1.166s] Computing alignments... [35.936s] Deallocating buffers... [0.018s] Loading trace points... [0.249s] Sorting trace points... [1.413s] Computing alignments... [36.337s] Deallocating buffers... [0.019s] Loading trace points... [0.08s] Sorting trace points... [1.499s] Computing alignments... [35.718s] Deallocating buffers... [0.207s] Loading trace points... [0.046s] Sorting trace points... [1.117s] Computing alignments... [37.585s] Deallocating buffers... [0.017s] Loading trace points... [0.059s] Sorting trace points... [1.572s] Computing alignments... [38.955s] Deallocating buffers... [0.043s] Loading trace points... [0.082s] Sorting trace points... [1.418s] Computing alignments... [39.38s] Deallocating buffers... [0.02s] Loading trace points... [0.042s] Sorting trace points... [1.35s] Computing alignments... [39.052s] Deallocating buffers... [0.068s] Loading trace points... [0.076s] Sorting trace points... [1.587s] Computing alignments... [38.802s] Deallocating buffers... [0.14s] Loading trace points... [0.099s] Sorting trace points... [1.622s] Computing alignments... [38.881s] Deallocating buffers... [0.072s] Loading trace points... [0.001s] Sorting trace points... [1.571s] Computing alignments... [39.308s] Deallocating buffers... [0.086s] Loading trace points... [0s] Sorting trace points... [1.474s] Computing alignments... [38.795s] Deallocating buffers... [0.017s] Loading trace points... [0s] [630.603s] Deallocating reference... [0.065s] Loading reference sequences... [36.221s] Masking reference... [30.914s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.008s] Building reference histograms... [32.957s] Allocating buffers... [0s] Processing query block 1, reference block 13/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.106s] Building query seed array... [2.482s] Computing hash join... [7.517s] Masking low complexity seeds... [0.272s] Searching alignments... [86.877s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.676s] Building query seed array... [3.587s] Computing hash join... [6.367s] Masking low complexity seeds... [0.318s] Searching alignments... [57.069s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.386s] Building query seed array... [3.215s] Computing hash join... [6.46s] Masking low complexity seeds... [0.315s] Searching alignments... [51.553s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.84s] Building query seed array... [2.662s] Computing hash join... [6.923s] Masking low complexity seeds... [0.262s] Searching alignments... [45.88s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.996s] Building query seed array... [2.408s] Computing hash join... [6.392s] Masking low complexity seeds... [0.274s] Searching alignments... [49.607s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 2/2, index chunk 2/4. Building reference seed array... [13.37s] Building query seed array... [2.939s] Computing hash join... [7.134s] Masking low complexity seeds... [0.269s] Searching alignments... [37.098s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.899s] Building query seed array... [2.989s] Computing hash join... [7.048s] Masking low complexity seeds... [0.269s] Searching alignments... [42.958s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.674s] Building query seed array... [2.502s] Computing hash join... [6.342s] Masking low complexity seeds... [0.254s] Searching alignments... [35.037s] Deallocating memory... [0s] Deallocating buffers... [2.544s] Clearing query masking... [1.909s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [7.121s] Sorting trace points... [1.437s] Computing alignments... [35.766s] Deallocating buffers... [0.018s] Loading trace points... [0.077s] Sorting trace points... [1.36s] Computing alignments... [35.812s] Deallocating buffers... [0.018s] Loading trace points... [0.081s] Sorting trace points... [1.425s] Computing alignments... [36.136s] Deallocating buffers... [0.019s] Loading trace points... [0.081s] Sorting trace points... [1.364s] Computing alignments... [35.711s] Deallocating buffers... [0.015s] Loading trace points... [0.001s] Sorting trace points... [1.367s] Computing alignments... [36.003s] Deallocating buffers... [0.023s] Loading trace points... [0.115s] Sorting trace points... [1.233s] Computing alignments... [35.875s] Deallocating buffers... [0.018s] Loading trace points... [0.085s] Sorting trace points... [1.416s] Computing alignments... [36.195s] Deallocating buffers... [0.019s] Loading trace points... [0.078s] Sorting trace points... [1.542s] Computing alignments... [35.616s] Deallocating buffers... [0.256s] Loading trace points... [0.07s] Sorting trace points... [1.497s] Computing alignments... [37.478s] Deallocating buffers... [0.033s] Loading trace points... [0.078s] Sorting trace points... [1.056s] Computing alignments... [38.861s] Deallocating buffers... [0.018s] Loading trace points... [0.048s] Sorting trace points... [1.615s] Computing alignments... [39.151s] Deallocating buffers... [0.046s] Loading trace points... [0.042s] Sorting trace points... [1.598s] Computing alignments... [39.136s] Deallocating buffers... [0.194s] Loading trace points... [0.044s] Sorting trace points... [1.51s] Computing alignments... [38.666s] Deallocating buffers... [0.02s] Loading trace points... [0.09s] Sorting trace points... [1.76s] Computing alignments... [38.968s] Deallocating buffers... [0.356s] Loading trace points... [0.108s] Sorting trace points... [1.58s] Computing alignments... [39.248s] Deallocating buffers... [0.076s] Loading trace points... [0s] Sorting trace points... [1.621s] Computing alignments... [39.099s] Deallocating buffers... [0.284s] Loading trace points... [0s] [630.906s] Deallocating reference... [0.07s] Loading reference sequences... [26.508s] Masking reference... [25.331s] Initializing dictionary... [0.063s] Initializing temporary storage... [0.009s] Building reference histograms... [26.287s] Allocating buffers... [0s] Processing query block 1, reference block 14/14, shape 1/2, index chunk 1/4. Building reference seed array... [8.54s] Building query seed array... [2.359s] Computing hash join... [5.516s] Masking low complexity seeds... [0.263s] Searching alignments... [70.335s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 1/2, index chunk 2/4. Building reference seed array... [10.018s] Building query seed array... [3.535s] Computing hash join... [5.51s] Masking low complexity seeds... [0.259s] Searching alignments... [47.145s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 1/2, index chunk 3/4. Building reference seed array... [11.085s] Building query seed array... [3.173s] Computing hash join... [5.351s] Masking low complexity seeds... [0.246s] Searching alignments... [41.985s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 1/2, index chunk 4/4. Building reference seed array... [8.611s] Building query seed array... [2.857s] Computing hash join... [5.674s] Masking low complexity seeds... [0.358s] Searching alignments... [38.001s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 2/2, index chunk 1/4. Building reference seed array... [8.359s] Building query seed array... [2.499s] Computing hash join... [5.085s] Masking low complexity seeds... [0.243s] Searching alignments... [40.449s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 2/2, index chunk 2/4. Building reference seed array... [10.674s] Building query seed array... [2.846s] Computing hash join... [5.22s] Masking low complexity seeds... [0.24s] Searching alignments... [30.715s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 2/2, index chunk 3/4. Building reference seed array... [10.73s] Building query seed array... [2.878s] Computing hash join... [5.176s] Masking low complexity seeds... [0.252s] Searching alignments... [33.914s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 2/2, index chunk 4/4. Building reference seed array... [8.517s] Building query seed array... [2.483s] Computing hash join... [5.119s] Masking low complexity seeds... [0.239s] Searching alignments... [28.874s] Deallocating memory... [0s] Deallocating buffers... [1.222s] Clearing query masking... [1.921s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [5.835s] Sorting trace points... [1.181s] Computing alignments... [28.457s] Deallocating buffers... [0.012s] Loading trace points... [0.062s] Sorting trace points... [1.113s] Computing alignments... [28.455s] Deallocating buffers... [0.015s] Loading trace points... [0.067s] Sorting trace points... [0.911s] Computing alignments... [28.838s] Deallocating buffers... [0.014s] Loading trace points... [0.053s] Sorting trace points... [1.108s] Computing alignments... [28.294s] Deallocating buffers... [0.012s] Loading trace points... [0.058s] Sorting trace points... [0.899s] Computing alignments... [28.676s] Deallocating buffers... [0.019s] Loading trace points... [0.001s] Sorting trace points... [0.914s] Computing alignments... [28.543s] Deallocating buffers... [0.014s] Loading trace points... [0.061s] Sorting trace points... [1.027s] Computing alignments... [28.789s] Deallocating buffers... [0.015s] Loading trace points... [0.076s] Sorting trace points... [1.119s] Computing alignments... [28.253s] Deallocating buffers... [0.012s] Loading trace points... [0.079s] Sorting trace points... [1.171s] Computing alignments... [29.835s] Deallocating buffers... [0.013s] Loading trace points... [0.079s] Sorting trace points... [1.201s] Computing alignments... [30.931s] Deallocating buffers... [0.016s] Loading trace points... [0.057s] Sorting trace points... [1.215s] Computing alignments... [31.179s] Deallocating buffers... [0.013s] Loading trace points... [0.073s] Sorting trace points... [1.006s] Computing alignments... [30.948s] Deallocating buffers... [0.016s] Loading trace points... [0.526s] Sorting trace points... [1.26s] Computing alignments... [30.79s] Deallocating buffers... [0.017s] Loading trace points... [0.068s] Sorting trace points... [1.128s] Computing alignments... [30.925s] Deallocating buffers... [0.016s] Loading trace points... [0.044s] Sorting trace points... [1.212s] Computing alignments... [31.187s] Deallocating buffers... [0.014s] Loading trace points... [0s] Sorting trace points... [1.204s] Computing alignments... [30.796s] Deallocating buffers... [0.013s] Loading trace points... [0s] [500.161s] Deallocating reference... [0.054s] Loading reference sequences... [0.068s] Deallocating buffers... [0s] Joining output blocks... Joining output blocks... [2527.3s] [2527.3s] Deallocating queries... [0.083s] Loading query sequences... [0s] Closing the input file... [0s] Closing the output file... Loading dictionary... [3.788s] [5.033s] Closing the database... [0s] Cleaning up... [0s] Total time = 20917s Reported 2773040126 pairwise alignments, 2773040126 HSPs. 16257196 queries aligned. DIAMOND BLASTx on /gscratch/srlab/sam/data/P_verrucosa/RNAseq/E10_R2.fastp-trim.20230215.fq.gz complete: E10_R2.blastx.meganized.daa Now MEGANizing E10_R2.blastx.meganized.daa Version MEGAN Community Edition (version 6.22.0, built 19 Feb 2022) Author(s) Daniel H. Huson Copyright (C) 2022 Daniel H. Huson. This program comes with ABSOLUTELY NO WARRANTY. Java version: 17.0.2 Functional classifications to use: EC, EGGNOG, GTDB, INTERPRO2GO, SEED Loading ncbi.map: 2,396,736 Loading ncbi.tre: 2,396,740 Loading ec.map: 8,200 Loading ec.tre: 8,204 Loading eggnog.map: 30,875 Loading eggnog.tre: 30,986 Loading gtdb.map: 240,103 Loading gtdb.tre: 240,107 Loading interpro2go.map: 14,242 Loading interpro2go.tre: 28,907 Loading seed.map: 961 Loading seed.tre: 962 Meganizing: E10_R2.blastx.meganized.daa Meganizing init Annotating DAA file using FAST mode (accession database and first accession per line) Annotating references 10% 20% 30% 40% 50% 60% 70% 100% (572.7s) Writing 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (1.2s) Binning reads Initializing... Initializing binning... Using 'Naive LCA' algorithm for binning: Taxonomy Using Best-Hit algorithm for binning: SEED Using Best-Hit algorithm for binning: EGGNOG Using 'Naive LCA' algorithm for binning: GTDB Using Best-Hit algorithm for binning: EC Using Best-Hit algorithm for binning: INTERPRO2GO Binning reads... Binning reads Analyzing alignments 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (5,371.7s) Total reads: 16,257,196 With hits: 16,257,196 Alignments: 2,770,177,896 Assig. Taxonomy: 15,333,871 Assig. SEED: 123,697 Assig. EGGNOG: 68,949 Assig. GTDB: 471,827 Assig. EC: 2,770,308 Assig. INTERPRO2GO: 1,431,027 MinSupport set to: 8128 Binning reads Applying min-support & disabled filter to Taxonomy... 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (0.3s) Min-supp. changes: 4,206 Binning reads Applying min-support & disabled filter to GTDB... 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (13.2s) Min-supp. changes: 3,415 Binning reads Writing classification tables 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (59.5s) Binning reads Syncing 100% (0.3s) Class. Taxonomy: 68 Class. SEED: 511 Class. EGGNOG: 1,831 Class. GTDB: 18 Class. EC: 2,428 Class. INTERPRO2GO: 8,162 Total time: 6,027s Peak memory: 35.1 of 195.3G MEGANization of E10_R2.blastx.meganized.daa completed. Generating MD5 checksum for /gscratch/srlab/sam/data/P_verrucosa/RNAseq/E11_R1.fastp-trim.20230215.fq.gz... 2dc1924597d0685cf33a8f4dde5a921c /gscratch/srlab/sam/data/P_verrucosa/RNAseq/E11_R1.fastp-trim.20230215.fq.gz Running DIAMOND BLASTx on /gscratch/srlab/sam/data/P_verrucosa/RNAseq/E11_R1.fastp-trim.20230215.fq.gz. diamond v2.1.1.155 (C) Max Planck Society for the Advancement of Science Documentation, support and updates available at http://www.diamondsearch.org Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021) #CPU threads: 40 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: Percentage range of top alignment score to report hits: 5 Opening the database... [0.377s] Database: /gscratch/srlab/blastdbs/20230215-ncbi-nr/20230215-ncbi-nr.dmnd (type: Diamond database, sequences: 526308523, letters: 207134680681) Block size = 15000000000 Opening the input file... [0.747s] Opening the output file... [0.929s] Loading query sequences... [57.918s] Masking queries... [14.483s] Algorithm: Double-indexed Building query histograms... [15.481s] Loading reference sequences... [30.912s] Masking reference... [30.888s] Initializing dictionary... [0.079s] Initializing temporary storage... [0.011s] Building reference histograms... [33.183s] Allocating buffers... [0.001s] Processing query block 1, reference block 1/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.321s] Building query seed array... [1.685s] Computing hash join... [6.018s] Masking low complexity seeds... [0.435s] Searching alignments... [54.102s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.526s] Building query seed array... [2.334s] Computing hash join... [5.778s] Masking low complexity seeds... [0.238s] Searching alignments... [36.68s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.862s] Building query seed array... [2.203s] Computing hash join... [5.623s] Masking low complexity seeds... [0.194s] Searching alignments... [31.033s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.5s] Building query seed array... [1.884s] Computing hash join... [5.642s] Masking low complexity seeds... [0.204s] Searching alignments... [27.545s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.283s] Building query seed array... [1.685s] Computing hash join... [5.779s] Masking low complexity seeds... [0.273s] Searching alignments... [29.022s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.927s] Building query seed array... [1.838s] Computing hash join... [5.695s] Masking low complexity seeds... [0.185s] Searching alignments... [23.092s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.453s] Building query seed array... [2.022s] Computing hash join... [5.606s] Masking low complexity seeds... [0.201s] Searching alignments... [25.575s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.845s] Building query seed array... [1.655s] Computing hash join... [5.943s] Masking low complexity seeds... [0.197s] Searching alignments... [21.795s] Deallocating memory... [0s] Deallocating buffers... [1.163s] Clearing query masking... [1.186s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [9.874s] Sorting trace points... [1.737s] Computing alignments... [43.533s] Deallocating buffers... [0.021s] Loading trace points... [0.131s] Sorting trace points... [1.375s] Computing alignments... [43.291s] Deallocating buffers... [0.019s] Loading trace points... [0.141s] Sorting trace points... [1.569s] Computing alignments... [43.865s] Deallocating buffers... [0.018s] Loading trace points... [0.159s] Sorting trace points... [1.567s] Computing alignments... [43.456s] Deallocating buffers... [0.019s] Loading trace points... [0.766s] Sorting trace points... [1.439s] Computing alignments... [45.192s] Deallocating buffers... [0.02s] Loading trace points... [0.142s] Sorting trace points... [1.716s] Computing alignments... [45.83s] Deallocating buffers... [0.019s] Loading trace points... [0.148s] Sorting trace points... [1.721s] Computing alignments... [45.626s] Deallocating buffers... [0.019s] Loading trace points... [0s] Sorting trace points... [1.673s] Computing alignments... [45.612s] Deallocating buffers... [0.019s] Loading trace points... [0s] [380.843s] Deallocating reference... [0.057s] Loading reference sequences... [29.202s] Masking reference... [32.159s] Initializing dictionary... [0.077s] Initializing temporary storage... [0.008s] Building reference histograms... [32.267s] Allocating buffers... [0.001s] Processing query block 1, reference block 2/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.077s] Building query seed array... [1.571s] Computing hash join... [5.442s] Masking low complexity seeds... [0.212s] Searching alignments... [52.513s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.788s] Building query seed array... [2.155s] Computing hash join... [5.224s] Masking low complexity seeds... [0.214s] Searching alignments... [34.293s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.825s] Building query seed array... [2.221s] Computing hash join... [5.472s] Masking low complexity seeds... [0.214s] Searching alignments... [30.801s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.393s] Building query seed array... [1.775s] Computing hash join... [5.573s] Masking low complexity seeds... [0.185s] Searching alignments... [28.145s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.436s] Building query seed array... [1.603s] Computing hash join... [5.679s] Masking low complexity seeds... [0.232s] Searching alignments... [29.239s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.279s] Building query seed array... [1.895s] Computing hash join... [5.866s] Masking low complexity seeds... [0.186s] Searching alignments... [22.424s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.873s] Building query seed array... [1.991s] Computing hash join... [5.359s] Masking low complexity seeds... [0.195s] Searching alignments... [24.529s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.477s] Building query seed array... [1.603s] Computing hash join... [5.87s] Masking low complexity seeds... [0.251s] Searching alignments... [21.283s] Deallocating memory... [0s] Deallocating buffers... [1.572s] Clearing query masking... [1.195s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [9.3s] Sorting trace points... [1.772s] Computing alignments... [43.529s] Deallocating buffers... [0.021s] Loading trace points... [0.1s] Sorting trace points... [1.687s] Computing alignments... [43.191s] Deallocating buffers... [0.018s] Loading trace points... [0.152s] Sorting trace points... [1.566s] Computing alignments... [43.695s] Deallocating buffers... [0.018s] Loading trace points... [0.178s] Sorting trace points... [1.45s] Computing alignments... [43.261s] Deallocating buffers... [0.019s] Loading trace points... [0.221s] Sorting trace points... [1.556s] Computing alignments... [44.902s] Deallocating buffers... [0.022s] Loading trace points... [0.142s] Sorting trace points... [1.829s] Computing alignments... [45.578s] Deallocating buffers... [0.119s] Loading trace points... [0.12s] Sorting trace points... [1.825s] Computing alignments... [45.479s] Deallocating buffers... [0.092s] Loading trace points... [0s] Sorting trace points... [1.699s] Computing alignments... [45.463s] Deallocating buffers... [0.019s] Loading trace points... [0s] [379.138s] Deallocating reference... [0.057s] Loading reference sequences... [29.345s] Masking reference... [30.925s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.007s] Building reference histograms... [32.731s] Allocating buffers... [0.001s] Processing query block 1, reference block 3/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.187s] Building query seed array... [1.627s] Computing hash join... [6.102s] Masking low complexity seeds... [0.285s] Searching alignments... [56.771s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.895s] Building query seed array... [2.292s] Computing hash join... [5.877s] Masking low complexity seeds... [0.219s] Searching alignments... [36.051s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.414s] Building query seed array... [2.064s] Computing hash join... [6.34s] Masking low complexity seeds... [0.196s] Searching alignments... [31.715s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 1/2, index chunk 4/4. Building reference seed array... [9.92s] Building query seed array... [1.796s] Computing hash join... [6.219s] Masking low complexity seeds... [0.268s] Searching alignments... [28.967s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.244s] Building query seed array... [1.555s] Computing hash join... [5.972s] Masking low complexity seeds... [0.204s] Searching alignments... [28.088s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.476s] Building query seed array... [1.779s] Computing hash join... [5.715s] Masking low complexity seeds... [0.18s] Searching alignments... [22.481s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.766s] Building query seed array... [1.999s] Computing hash join... [6.213s] Masking low complexity seeds... [0.22s] Searching alignments... [25.406s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.407s] Building query seed array... [1.632s] Computing hash join... [5.897s] Masking low complexity seeds... [0.211s] Searching alignments... [22.18s] Deallocating memory... [0s] Deallocating buffers... [1.394s] Clearing query masking... [1.187s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [9.451s] Sorting trace points... [1.771s] Computing alignments... [43.639s] Deallocating buffers... [0.018s] Loading trace points... [0.145s] Sorting trace points... [1.321s] Computing alignments... [43.385s] Deallocating buffers... [0.02s] Loading trace points... [0.165s] Sorting trace points... [1.665s] Computing alignments... [43.76s] Deallocating buffers... [0.019s] Loading trace points... [0.208s] Sorting trace points... [1.402s] Computing alignments... [43.391s] Deallocating buffers... [0.02s] Loading trace points... [0.151s] Sorting trace points... [1.533s] Computing alignments... [45.101s] Deallocating buffers... [0.019s] Loading trace points... [0.167s] Sorting trace points... [1.365s] Computing alignments... [45.731s] Deallocating buffers... [0.02s] Loading trace points... [0.143s] Sorting trace points... [1.76s] Computing alignments... [45.548s] Deallocating buffers... [0.019s] Loading trace points... [0s] Sorting trace points... [1.426s] Computing alignments... [45.47s] Deallocating buffers... [0.02s] Loading trace points... [0s] [378.983s] Deallocating reference... [0.062s] Loading reference sequences... [32.575s] Masking reference... [31.951s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.008s] Building reference histograms... [32.464s] Allocating buffers... [0s] Processing query block 1, reference block 4/14, shape 1/2, index chunk 1/4. Building reference seed array... [9.96s] Building query seed array... [1.63s] Computing hash join... [6.361s] Masking low complexity seeds... [0.483s] Searching alignments... [55.675s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.752s] Building query seed array... [2.287s] Computing hash join... [7.034s] Masking low complexity seeds... [0.247s] Searching alignments... [34.015s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.456s] Building query seed array... [2.272s] Computing hash join... [7.184s] Masking low complexity seeds... [0.201s] Searching alignments... [32.599s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.189s] Building query seed array... [1.719s] Computing hash join... [7.235s] Masking low complexity seeds... [0.257s] Searching alignments... [27.271s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.316s] Building query seed array... [1.579s] Computing hash join... [6.474s] Masking low complexity seeds... [0.185s] Searching alignments... [28.223s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 2/2, index chunk 2/4. Building reference seed array... [13.19s] Building query seed array... [1.924s] Computing hash join... [6.305s] Masking low complexity seeds... [0.191s] Searching alignments... [22.598s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.479s] Building query seed array... [1.967s] Computing hash join... [6.874s] Masking low complexity seeds... [0.181s] Searching alignments... [25s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 2/2, index chunk 4/4. Building reference seed array... [9.884s] Building query seed array... [1.544s] Computing hash join... [6.442s] Masking low complexity seeds... [0.191s] Searching alignments... [21.842s] Deallocating memory... [0s] Deallocating buffers... [1.284s] Clearing query masking... [1.224s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [9.104s] Sorting trace points... [1.844s] Computing alignments... [43.438s] Deallocating buffers... [0.018s] Loading trace points... [0.106s] Sorting trace points... [1.565s] Computing alignments... [43.34s] Deallocating buffers... [0.019s] Loading trace points... [0.137s] Sorting trace points... [1.613s] Computing alignments... [43.944s] Deallocating buffers... [0.018s] Loading trace points... [0.115s] Sorting trace points... [1.493s] Computing alignments... [43.604s] Deallocating buffers... [0.021s] Loading trace points... [0.154s] Sorting trace points... [1.633s] Computing alignments... [45.256s] Deallocating buffers... [0.022s] Loading trace points... [1.094s] Sorting trace points... [1.802s] Computing alignments... [46.045s] Deallocating buffers... [0.024s] Loading trace points... [0.127s] Sorting trace points... [1.465s] Computing alignments... [45.721s] Deallocating buffers... [0.02s] Loading trace points... [0s] Sorting trace points... [1.777s] Computing alignments... [45.568s] Deallocating buffers... [0.15s] Loading trace points... [0s] [382.16s] Deallocating reference... [0.056s] Loading reference sequences... [29.477s] Masking reference... [30.913s] Initializing dictionary... [0.077s] Initializing temporary storage... [0.007s] Building reference histograms... [32.758s] Allocating buffers... [0s] Processing query block 1, reference block 5/14, shape 1/2, index chunk 1/4. Building reference seed array... [9.933s] Building query seed array... [1.636s] Computing hash join... [5.775s] Masking low complexity seeds... [0.209s] Searching alignments... [53.053s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 1/2, index chunk 2/4. Building reference seed array... [13.338s] Building query seed array... [2.399s] Computing hash join... [6.19s] Masking low complexity seeds... [0.196s] Searching alignments... [34.471s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.62s] Building query seed array... [2.177s] Computing hash join... [6.239s] Masking low complexity seeds... [0.204s] Searching alignments... [30.26s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.286s] Building query seed array... [1.838s] Computing hash join... [5.853s] Masking low complexity seeds... [0.216s] Searching alignments... [27.301s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.279s] Building query seed array... [1.575s] Computing hash join... [6.134s] Masking low complexity seeds... [0.185s] Searching alignments... [28.514s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.401s] Building query seed array... [1.875s] Computing hash join... [6.26s] Masking low complexity seeds... [0.203s] Searching alignments... [22.685s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.228s] Building query seed array... [1.966s] Computing hash join... [5.915s] Masking low complexity seeds... [0.213s] Searching alignments... [24.708s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.419s] Building query seed array... [1.594s] Computing hash join... [6.348s] Masking low complexity seeds... [0.248s] Searching alignments... [21.673s] Deallocating memory... [0s] Deallocating buffers... [1.491s] Clearing query masking... [1.217s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [9.803s] Sorting trace points... [1.702s] Computing alignments... [43.502s] Deallocating buffers... [0.02s] Loading trace points... [0.143s] Sorting trace points... [1.303s] Computing alignments... [43.161s] Deallocating buffers... [0.021s] Loading trace points... [0.164s] Sorting trace points... [1.655s] Computing alignments... [43.506s] Deallocating buffers... [0.022s] Loading trace points... [0.096s] Sorting trace points... [1.444s] Computing alignments... [43.266s] Deallocating buffers... [0.019s] Loading trace points... [0.133s] Sorting trace points... [1.766s] Computing alignments... [45.089s] Deallocating buffers... [0.232s] Loading trace points... [0.118s] Sorting trace points... [1.409s] Computing alignments... [45.495s] Deallocating buffers... [0.021s] Loading trace points... [0.129s] Sorting trace points... [1.296s] Computing alignments... [45.419s] Deallocating buffers... [0.02s] Loading trace points... [0s] Sorting trace points... [1.69s] Computing alignments... [45.225s] Deallocating buffers... [0.023s] Loading trace points... [0s] [378.04s] Deallocating reference... [0.057s] Loading reference sequences... [31.432s] Masking reference... [31.296s] Initializing dictionary... [0.077s] Initializing temporary storage... [0.007s] Building reference histograms... [32.32s] Allocating buffers... [0.001s] Processing query block 1, reference block 6/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.415s] Building query seed array... [1.623s] Computing hash join... [6.696s] Masking low complexity seeds... [0.353s] Searching alignments... [54.178s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 1/2, index chunk 2/4. Building reference seed array... [13.12s] Building query seed array... [2.184s] Computing hash join... [6.558s] Masking low complexity seeds... [0.21s] Searching alignments... [33.397s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.474s] Building query seed array... [2.119s] Computing hash join... [6.612s] Masking low complexity seeds... [0.203s] Searching alignments... [30.095s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.64s] Building query seed array... [1.793s] Computing hash join... [6.375s] Masking low complexity seeds... [0.212s] Searching alignments... [27.486s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.463s] Building query seed array... [1.59s] Computing hash join... [6.845s] Masking low complexity seeds... [0.187s] Searching alignments... [28.308s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.225s] Building query seed array... [1.904s] Computing hash join... [6.755s] Masking low complexity seeds... [0.286s] Searching alignments... [22.323s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.544s] Building query seed array... [1.911s] Computing hash join... [6.275s] Masking low complexity seeds... [0.198s] Searching alignments... [23.978s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 2/2, index chunk 4/4. Building reference seed array... [9.994s] Building query seed array... [1.543s] Computing hash join... [6.767s] Masking low complexity seeds... [0.211s] Searching alignments... [22.465s] Deallocating memory... [0s] Deallocating buffers... [1.253s] Clearing query masking... [1.273s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [9.3s] Sorting trace points... [1.763s] Computing alignments... [43.066s] Deallocating buffers... [0.019s] Loading trace points... [0.143s] Sorting trace points... [1.614s] Computing alignments... [42.785s] Deallocating buffers... [0.018s] Loading trace points... [0.291s] Sorting trace points... [1.541s] Computing alignments... [43.084s] Deallocating buffers... [0.114s] Loading trace points... [0.213s] Sorting trace points... [1.401s] Computing alignments... [42.767s] Deallocating buffers... [0.021s] Loading trace points... [0.153s] Sorting trace points... [1.742s] Computing alignments... [44.573s] Deallocating buffers... [0.019s] Loading trace points... [0.145s] Sorting trace points... [1.419s] Computing alignments... [45.196s] Deallocating buffers... [0.022s] Loading trace points... [0.177s] Sorting trace points... [1.388s] Computing alignments... [45.017s] Deallocating buffers... [0.021s] Loading trace points... [0s] Sorting trace points... [1.242s] Computing alignments... [45.008s] Deallocating buffers... [0.021s] Loading trace points... [0s] [374.433s] Deallocating reference... [0.058s] Loading reference sequences... [31.424s] Masking reference... [31.046s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.008s] Building reference histograms... [32.599s] Allocating buffers... [0s] Processing query block 1, reference block 7/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.668s] Building query seed array... [1.573s] Computing hash join... [6.21s] Masking low complexity seeds... [0.227s] Searching alignments... [56.653s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.797s] Building query seed array... [2.137s] Computing hash join... [6.144s] Masking low complexity seeds... [0.211s] Searching alignments... [35.618s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.729s] Building query seed array... [2.142s] Computing hash join... [6.414s] Masking low complexity seeds... [0.225s] Searching alignments... [33.151s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.796s] Building query seed array... [1.645s] Computing hash join... [6.468s] Masking low complexity seeds... [0.217s] Searching alignments... [27.501s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.399s] Building query seed array... [1.562s] Computing hash join... [6.076s] Masking low complexity seeds... [0.216s] Searching alignments... [28.357s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 2/2, index chunk 2/4. Building reference seed array... [13.117s] Building query seed array... [1.834s] Computing hash join... [6.184s] Masking low complexity seeds... [0.194s] Searching alignments... [22.5s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.507s] Building query seed array... [1.869s] Computing hash join... [6.587s] Masking low complexity seeds... [0.268s] Searching alignments... [25.113s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.66s] Building query seed array... [1.566s] Computing hash join... [6.145s] Masking low complexity seeds... [0.23s] Searching alignments... [22.372s] Deallocating memory... [0s] Deallocating buffers... [1.609s] Clearing query masking... [1.224s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [9.41s] Sorting trace points... [1.816s] Computing alignments... [43.438s] Deallocating buffers... [0.021s] Loading trace points... [0.136s] Sorting trace points... [1.684s] Computing alignments... [43.264s] Deallocating buffers... [0.018s] Loading trace points... [0.134s] Sorting trace points... [1.765s] Computing alignments... [43.632s] Deallocating buffers... [0.201s] Loading trace points... [0.099s] Sorting trace points... [1.762s] Computing alignments... [43.358s] Deallocating buffers... [0.022s] Loading trace points... [0.157s] Sorting trace points... [1.568s] Computing alignments... [45.13s] Deallocating buffers... [0.02s] Loading trace points... [0.299s] Sorting trace points... [1.746s] Computing alignments... [45.68s] Deallocating buffers... [0.019s] Loading trace points... [0.146s] Sorting trace points... [1.801s] Computing alignments... [45.523s] Deallocating buffers... [0.023s] Loading trace points... [0s] Sorting trace points... [1.899s] Computing alignments... [45.412s] Deallocating buffers... [0.235s] Loading trace points... [0s] [380.539s] Deallocating reference... [0.057s] Loading reference sequences... [29.27s] Masking reference... [30.877s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.007s] Building reference histograms... [32.74s] Allocating buffers... [0s] Processing query block 1, reference block 8/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.813s] Building query seed array... [1.602s] Computing hash join... [6.124s] Masking low complexity seeds... [0.433s] Searching alignments... [54.207s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 1/2, index chunk 2/4. Building reference seed array... [13.488s] Building query seed array... [2.276s] Computing hash join... [6.202s] Masking low complexity seeds... [0.258s] Searching alignments... [36.701s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 1/2, index chunk 3/4. Building reference seed array... [14.029s] Building query seed array... [2.108s] Computing hash join... [5.932s] Masking low complexity seeds... [0.19s] Searching alignments... [31.716s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.461s] Building query seed array... [1.809s] Computing hash join... [5.93s] Masking low complexity seeds... [0.2s] Searching alignments... [27.438s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.695s] Building query seed array... [1.578s] Computing hash join... [6.076s] Masking low complexity seeds... [0.184s] Searching alignments... [28.021s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.997s] Building query seed array... [1.868s] Computing hash join... [5.753s] Masking low complexity seeds... [0.217s] Searching alignments... [22.813s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.733s] Building query seed array... [1.911s] Computing hash join... [6.013s] Masking low complexity seeds... [0.202s] Searching alignments... [25.332s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.288s] Building query seed array... [1.528s] Computing hash join... [6.364s] Masking low complexity seeds... [0.208s] Searching alignments... [21.581s] Deallocating memory... [0s] Deallocating buffers... [1.725s] Clearing query masking... [1.196s] Opening temporary output file... [0.002s] Computing alignments... Loading trace points... [9.453s] Sorting trace points... [1.807s] Computing alignments... [43.489s] Deallocating buffers... [0.021s] Loading trace points... [0.117s] Sorting trace points... [1.439s] Computing alignments... [43.201s] Deallocating buffers... [0.15s] Loading trace points... [0.188s] Sorting trace points... [1.705s] Computing alignments... [43.604s] Deallocating buffers... [0.022s] Loading trace points... [0.113s] Sorting trace points... [1.38s] Computing alignments... [43.362s] Deallocating buffers... [0.021s] Loading trace points... [0.085s] Sorting trace points... [1.699s] Computing alignments... [44.976s] Deallocating buffers... [0.019s] Loading trace points... [0.174s] Sorting trace points... [1.924s] Computing alignments... [45.564s] Deallocating buffers... [0.219s] Loading trace points... [0.145s] Sorting trace points... [1.693s] Computing alignments... [45.39s] Deallocating buffers... [0.021s] Loading trace points... [0s] Sorting trace points... [1.456s] Computing alignments... [45.431s] Deallocating buffers... [0.02s] Loading trace points... [0s] [379.05s] Deallocating reference... [0.057s] Loading reference sequences... [30.221s] Masking reference... [30.893s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.006s] Building reference histograms... [33.1s] Allocating buffers... [0s] Processing query block 1, reference block 9/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.2s] Building query seed array... [1.574s] Computing hash join... [5.676s] Masking low complexity seeds... [0.193s] Searching alignments... [53.72s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 1/2, index chunk 2/4. Building reference seed array... [13.652s] Building query seed array... [2.295s] Computing hash join... [5.816s] Masking low complexity seeds... [0.198s] Searching alignments... [34.068s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.003s] Building query seed array... [2.13s] Computing hash join... [5.806s] Masking low complexity seeds... [0.228s] Searching alignments... [30.629s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.617s] Building query seed array... [1.73s] Computing hash join... [5.799s] Masking low complexity seeds... [0.2s] Searching alignments... [27.211s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.905s] Building query seed array... [1.555s] Computing hash join... [6.4s] Masking low complexity seeds... [0.238s] Searching alignments... [27.998s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.975s] Building query seed array... [1.952s] Computing hash join... [5.906s] Masking low complexity seeds... [0.185s] Searching alignments... [23.909s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.652s] Building query seed array... [1.896s] Computing hash join... [5.645s] Masking low complexity seeds... [0.175s] Searching alignments... [24.709s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.273s] Building query seed array... [1.654s] Computing hash join... [6.167s] Masking low complexity seeds... [0.281s] Searching alignments... [21.58s] Deallocating memory... [0s] Deallocating buffers... [1.944s] Clearing query masking... [1.197s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [9.363s] Sorting trace points... [1.694s] Computing alignments... [43.546s] Deallocating buffers... [0.019s] Loading trace points... [0.144s] Sorting trace points... [1.335s] Computing alignments... [43.252s] Deallocating buffers... [0.16s] Loading trace points... [0.26s] Sorting trace points... [1.485s] Computing alignments... [43.607s] Deallocating buffers... [0.021s] Loading trace points... [0.131s] Sorting trace points... [1.486s] Computing alignments... [43.322s] Deallocating buffers... [0.051s] Loading trace points... [0.194s] Sorting trace points... [1.78s] Computing alignments... [44.985s] Deallocating buffers... [0.125s] Loading trace points... [0.156s] Sorting trace points... [1.431s] Computing alignments... [45.58s] Deallocating buffers... [0.022s] Loading trace points... [0.15s] Sorting trace points... [1.748s] Computing alignments... [45.334s] Deallocating buffers... [0.101s] Loading trace points... [0s] Sorting trace points... [1.285s] Computing alignments... [45.284s] Deallocating buffers... [0.02s] Loading trace points... [0s] [378.198s] Deallocating reference... [0.059s] Loading reference sequences... [29.145s] Masking reference... [30.86s] Initializing dictionary... [0.077s] Initializing temporary storage... [0.005s] Building reference histograms... [33.244s] Allocating buffers... [0s] Processing query block 1, reference block 10/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.351s] Building query seed array... [1.673s] Computing hash join... [6.771s] Masking low complexity seeds... [0.489s] Searching alignments... [56.735s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.872s] Building query seed array... [2.184s] Computing hash join... [7.04s] Masking low complexity seeds... [0.285s] Searching alignments... [34.507s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 1/2, index chunk 3/4. Building reference seed array... [14.311s] Building query seed array... [2.091s] Computing hash join... [6.704s] Masking low complexity seeds... [0.198s] Searching alignments... [31.658s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.23s] Building query seed array... [1.835s] Computing hash join... [7.093s] Masking low complexity seeds... [0.23s] Searching alignments... [28.322s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.039s] Building query seed array... [1.661s] Computing hash join... [6.451s] Masking low complexity seeds... [0.205s] Searching alignments... [29.458s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.481s] Building query seed array... [1.839s] Computing hash join... [6.275s] Masking low complexity seeds... [0.193s] Searching alignments... [22.137s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.62s] Building query seed array... [2.025s] Computing hash join... [6.939s] Masking low complexity seeds... [0.193s] Searching alignments... [24.62s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.394s] Building query seed array... [1.701s] Computing hash join... [6.405s] Masking low complexity seeds... [0.229s] Searching alignments... [22.624s] Deallocating memory... [0s] Deallocating buffers... [1.472s] Clearing query masking... [1.234s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [9.317s] Sorting trace points... [1.789s] Computing alignments... [43.333s] Deallocating buffers... [0.019s] Loading trace points... [0.127s] Sorting trace points... [1.596s] Computing alignments... [43.135s] Deallocating buffers... [0.214s] Loading trace points... [0.25s] Sorting trace points... [1.715s] Computing alignments... [43.503s] Deallocating buffers... [0.018s] Loading trace points... [0.121s] Sorting trace points... [1.649s] Computing alignments... [43.096s] Deallocating buffers... [0.018s] Loading trace points... [0.168s] Sorting trace points... [1.396s] Computing alignments... [44.747s] Deallocating buffers... [0.02s] Loading trace points... [0.151s] Sorting trace points... [1.797s] Computing alignments... [45.354s] Deallocating buffers... [0.019s] Loading trace points... [0.187s] Sorting trace points... [1.45s] Computing alignments... [45.484s] Deallocating buffers... [0.02s] Loading trace points... [0s] Sorting trace points... [1.428s] Computing alignments... [45.278s] Deallocating buffers... [0.02s] Loading trace points... [0s] [377.643s] Deallocating reference... [0.057s] Loading reference sequences... [29.517s] Masking reference... [32.086s] Initializing dictionary... [0.077s] Initializing temporary storage... [0.005s] Building reference histograms... [32.339s] Allocating buffers... [0s] Processing query block 1, reference block 11/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.21s] Building query seed array... [1.633s] Computing hash join... [6.82s] Masking low complexity seeds... [0.194s] Searching alignments... [54.851s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 1/2, index chunk 2/4. Building reference seed array... [13.165s] Building query seed array... [2.371s] Computing hash join... [6.718s] Masking low complexity seeds... [0.197s] Searching alignments... [35.492s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.633s] Building query seed array... [2.315s] Computing hash join... [6.929s] Masking low complexity seeds... [0.232s] Searching alignments... [31.855s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.448s] Building query seed array... [1.701s] Computing hash join... [6.643s] Masking low complexity seeds... [0.229s] Searching alignments... [28.774s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.485s] Building query seed array... [1.587s] Computing hash join... [6.458s] Masking low complexity seeds... [0.187s] Searching alignments... [27.552s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.573s] Building query seed array... [1.956s] Computing hash join... [6.421s] Masking low complexity seeds... [0.181s] Searching alignments... [22.491s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.724s] Building query seed array... [2.161s] Computing hash join... [6.692s] Masking low complexity seeds... [0.22s] Searching alignments... [24.871s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.137s] Building query seed array... [1.512s] Computing hash join... [6.383s] Masking low complexity seeds... [0.188s] Searching alignments... [22.353s] Deallocating memory... [0s] Deallocating buffers... [1.563s] Clearing query masking... [1.236s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [9.398s] Sorting trace points... [1.727s] Computing alignments... [43.386s] Deallocating buffers... [0.019s] Loading trace points... [0.123s] Sorting trace points... [1.896s] Computing alignments... [42.995s] Deallocating buffers... [0.251s] Loading trace points... [0.198s] Sorting trace points... [1.701s] Computing alignments... [43.206s] Deallocating buffers... [0.018s] Loading trace points... [0.058s] Sorting trace points... [1.616s] Computing alignments... [42.902s] Deallocating buffers... [0.022s] Loading trace points... [0.154s] Sorting trace points... [1.466s] Computing alignments... [44.639s] Deallocating buffers... [0.022s] Loading trace points... [0.151s] Sorting trace points... [1.424s] Computing alignments... [45.4s] Deallocating buffers... [0.021s] Loading trace points... [0.154s] Sorting trace points... [1.712s] Computing alignments... [45.14s] Deallocating buffers... [0.02s] Loading trace points... [0s] Sorting trace points... [1.692s] Computing alignments... [45.068s] Deallocating buffers... [0.019s] Loading trace points... [0s] [376.812s] Deallocating reference... [0.058s] Loading reference sequences... [29.327s] Masking reference... [31.385s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.005s] Building reference histograms... [32.466s] Allocating buffers... [0.001s] Processing query block 1, reference block 12/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.238s] Building query seed array... [1.589s] Computing hash join... [6.108s] Masking low complexity seeds... [0.199s] Searching alignments... [55.018s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 1/2, index chunk 2/4. Building reference seed array... [13.158s] Building query seed array... [2.309s] Computing hash join... [5.896s] Masking low complexity seeds... [0.2s] Searching alignments... [36.175s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.802s] Building query seed array... [2.07s] Computing hash join... [6.14s] Masking low complexity seeds... [0.217s] Searching alignments... [31.001s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.183s] Building query seed array... [1.717s] Computing hash join... [5.525s] Masking low complexity seeds... [0.216s] Searching alignments... [27.402s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 2/2, index chunk 1/4. Building reference seed array... [11.079s] Building query seed array... [1.685s] Computing hash join... [5.684s] Masking low complexity seeds... [0.194s] Searching alignments... [28.198s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.393s] Building query seed array... [1.792s] Computing hash join... [6.12s] Masking low complexity seeds... [0.241s] Searching alignments... [22.156s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.344s] Building query seed array... [1.789s] Computing hash join... [5.545s] Masking low complexity seeds... [0.212s] Searching alignments... [24.902s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.806s] Building query seed array... [1.636s] Computing hash join... [6.096s] Masking low complexity seeds... [0.238s] Searching alignments... [21.722s] Deallocating memory... [0s] Deallocating buffers... [2.025s] Clearing query masking... [1.185s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [9.177s] Sorting trace points... [1.817s] Computing alignments... [43.444s] Deallocating buffers... [0.019s] Loading trace points... [0.235s] Sorting trace points... [2.026s] Computing alignments... [43.259s] Deallocating buffers... [0.417s] Loading trace points... [0.161s] Sorting trace points... [1.704s] Computing alignments... [43.644s] Deallocating buffers... [0.019s] Loading trace points... [0.12s] Sorting trace points... [1.553s] Computing alignments... [43.269s] Deallocating buffers... [0.019s] Loading trace points... [1.369s] Sorting trace points... [1.799s] Computing alignments... [45.02s] Deallocating buffers... [0.02s] Loading trace points... [0.124s] Sorting trace points... [1.826s] Computing alignments... [45.515s] Deallocating buffers... [0.069s] Loading trace points... [0.129s] Sorting trace points... [1.647s] Computing alignments... [45.502s] Deallocating buffers... [0.019s] Loading trace points... [0s] Sorting trace points... [1.789s] Computing alignments... [45.685s] Deallocating buffers... [0.286s] Loading trace points... [0s] [381.787s] Deallocating reference... [0.067s] Loading reference sequences... [32.345s] Masking reference... [31.078s] Initializing dictionary... [0.079s] Initializing temporary storage... [0.005s] Building reference histograms... [32.898s] Allocating buffers... [0s] Processing query block 1, reference block 13/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.203s] Building query seed array... [1.68s] Computing hash join... [7.138s] Masking low complexity seeds... [0.211s] Searching alignments... [55.215s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 1/2, index chunk 2/4. Building reference seed array... [13.137s] Building query seed array... [2.46s] Computing hash join... [6.848s] Masking low complexity seeds... [0.2s] Searching alignments... [36.067s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 1/2, index chunk 3/4. Building reference seed array... [14.015s] Building query seed array... [2.184s] Computing hash join... [6.615s] Masking low complexity seeds... [0.197s] Searching alignments... [31.765s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.207s] Building query seed array... [1.874s] Computing hash join... [7.017s] Masking low complexity seeds... [0.195s] Searching alignments... [27.73s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.662s] Building query seed array... [1.744s] Computing hash join... [6.448s] Masking low complexity seeds... [0.211s] Searching alignments... [28.259s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.677s] Building query seed array... [1.946s] Computing hash join... [6.427s] Masking low complexity seeds... [0.248s] Searching alignments... [22.769s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.778s] Building query seed array... [1.91s] Computing hash join... [6.938s] Masking low complexity seeds... [0.184s] Searching alignments... [24.621s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.563s] Building query seed array... [1.597s] Computing hash join... [6.507s] Masking low complexity seeds... [0.206s] Searching alignments... [21.729s] Deallocating memory... [0s] Deallocating buffers... [1.575s] Clearing query masking... [1.239s] Opening temporary output file... [0.002s] Computing alignments... Loading trace points... [9.394s] Sorting trace points... [1.756s] Computing alignments... [43.202s] Deallocating buffers... [0.022s] Loading trace points... [0.154s] Sorting trace points... [1.653s] Computing alignments... [43.064s] Deallocating buffers... [0.022s] Loading trace points... [0.149s] Sorting trace points... [1.719s] Computing alignments... [43.463s] Deallocating buffers... [0.019s] Loading trace points... [0.129s] Sorting trace points... [1.75s] Computing alignments... [43.203s] Deallocating buffers... [0.077s] Loading trace points... [0.176s] Sorting trace points... [1.479s] Computing alignments... [44.867s] Deallocating buffers... [0.022s] Loading trace points... [0.147s] Sorting trace points... [1.949s] Computing alignments... [45.461s] Deallocating buffers... [0.265s] Loading trace points... [0.15s] Sorting trace points... [1.572s] Computing alignments... [45.371s] Deallocating buffers... [0.023s] Loading trace points... [0s] Sorting trace points... [1.522s] Computing alignments... [45.387s] Deallocating buffers... [0.02s] Loading trace points... [0s] [378.398s] Deallocating reference... [0.063s] Loading reference sequences... [23.655s] Masking reference... [25.008s] Initializing dictionary... [0.063s] Initializing temporary storage... [0.005s] Building reference histograms... [26.75s] Allocating buffers... [0s] Processing query block 1, reference block 14/14, shape 1/2, index chunk 1/4. Building reference seed array... [8.189s] Building query seed array... [1.552s] Computing hash join... [4.658s] Masking low complexity seeds... [0.187s] Searching alignments... [45.437s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 1/2, index chunk 2/4. Building reference seed array... [10.621s] Building query seed array... [2.391s] Computing hash join... [4.483s] Masking low complexity seeds... [0.218s] Searching alignments... [29.406s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 1/2, index chunk 3/4. Building reference seed array... [11.187s] Building query seed array... [2.252s] Computing hash join... [4.559s] Masking low complexity seeds... [0.188s] Searching alignments... [25.591s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 1/2, index chunk 4/4. Building reference seed array... [8.323s] Building query seed array... [1.779s] Computing hash join... [4.435s] Masking low complexity seeds... [0.18s] Searching alignments... [22.351s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 2/2, index chunk 1/4. Building reference seed array... [8.883s] Building query seed array... [1.628s] Computing hash join... [4.624s] Masking low complexity seeds... [0.198s] Searching alignments... [22.967s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 2/2, index chunk 2/4. Building reference seed array... [10.167s] Building query seed array... [1.876s] Computing hash join... [4.543s] Masking low complexity seeds... [0.187s] Searching alignments... [18.788s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 2/2, index chunk 3/4. Building reference seed array... [11.199s] Building query seed array... [1.909s] Computing hash join... [4.308s] Masking low complexity seeds... [0.185s] Searching alignments... [21.592s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 2/2, index chunk 4/4. Building reference seed array... [8.677s] Building query seed array... [1.66s] Computing hash join... [4.366s] Masking low complexity seeds... [0.193s] Searching alignments... [17.374s] Deallocating memory... [0s] Deallocating buffers... [1.365s] Clearing query masking... [1.226s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [13.187s] Sorting trace points... [1.937s] Computing alignments... [51.651s] Deallocating buffers... [0.023s] Loading trace points... [0.383s] Sorting trace points... [1.918s] Computing alignments... [51.864s] Deallocating buffers... [0.081s] Loading trace points... [0.164s] Sorting trace points... [1.779s] Computing alignments... [52.215s] Deallocating buffers... [0.025s] Loading trace points... [0.144s] Sorting trace points... [2.167s] Computing alignments... [54.915s] Deallocating buffers... [0.023s] Loading trace points... [0.072s] Sorting trace points... [1.795s] Computing alignments... [54.083s] Deallocating buffers... [0.026s] Loading trace points... [0s] Sorting trace points... [0.699s] Computing alignments... [18.084s] Deallocating buffers... [0.008s] Loading trace points... [0s] [307.45s] Deallocating reference... [0.049s] Loading reference sequences... [0.076s] Deallocating buffers... [0s] Joining output blocks... Joining output blocks... [1550.89s] [1550.89s] Deallocating queries... [0.066s] Loading query sequences... [0s] Closing the input file... [0s] Closing the output file... Loading dictionary... [3.697s] [4.726s] Closing the database... [0s] Cleaning up... [0s] Total time = 13860.4s Reported 1748628463 pairwise alignments, 1748628463 HSPs. 9838583 queries aligned. DIAMOND BLASTx on /gscratch/srlab/sam/data/P_verrucosa/RNAseq/E11_R1.fastp-trim.20230215.fq.gz complete: E11_R1.blastx.meganized.daa Now MEGANizing E11_R1.blastx.meganized.daa Version MEGAN Community Edition (version 6.22.0, built 19 Feb 2022) Author(s) Daniel H. Huson Copyright (C) 2022 Daniel H. Huson. This program comes with ABSOLUTELY NO WARRANTY. Java version: 17.0.2 Functional classifications to use: EC, EGGNOG, GTDB, INTERPRO2GO, SEED Loading ncbi.map: 2,396,736 Loading ncbi.tre: 2,396,740 Loading ec.map: 8,200 Loading ec.tre: 8,204 Loading eggnog.map: 30,875 Loading eggnog.tre: 30,986 Loading gtdb.map: 240,103 Loading gtdb.tre: 240,107 Loading interpro2go.map: 14,242 Loading interpro2go.tre: 28,907 Loading seed.map: 961 Loading seed.tre: 962 Meganizing: E11_R1.blastx.meganized.daa Meganizing init Annotating DAA file using FAST mode (accession database and first accession per line) Annotating references 10% 20% 30% 40% 50% 60% 70% 100% (541.7s) Writing 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (1.3s) Binning reads Initializing... Initializing binning... Using 'Naive LCA' algorithm for binning: Taxonomy Using Best-Hit algorithm for binning: SEED Using Best-Hit algorithm for binning: EGGNOG Using 'Naive LCA' algorithm for binning: GTDB Using Best-Hit algorithm for binning: EC Using Best-Hit algorithm for binning: INTERPRO2GO Binning reads... Binning reads Analyzing alignments 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (3,372.4s) Total reads: 9,838,583 With hits: 9,838,583 Alignments: 1,746,272,168 Assig. Taxonomy: 9,216,647 Assig. SEED: 86,589 Assig. EGGNOG: 47,382 Assig. GTDB: 313,491 Assig. EC: 1,541,304 Assig. INTERPRO2GO: 822,054 MinSupport set to: 4919 Binning reads Applying min-support & disabled filter to Taxonomy... 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (0.4s) Min-supp. changes: 4,307 Binning reads Applying min-support & disabled filter to GTDB... 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (8.3s) Min-supp. changes: 3,330 Binning reads Writing classification tables 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (17.9s) Binning reads Syncing 100% (0.3s) Class. Taxonomy: 65 Class. SEED: 521 Class. EGGNOG: 1,832 Class. GTDB: 21 Class. EC: 2,454 Class. INTERPRO2GO: 7,806 Total time: 3,950s Peak memory: 33.8 of 195.3G MEGANization of E11_R1.blastx.meganized.daa completed. Generating MD5 checksum for /gscratch/srlab/sam/data/P_verrucosa/RNAseq/E11_R2.fastp-trim.20230215.fq.gz... 28b160aad917bd921c2a2c9905fb5359 /gscratch/srlab/sam/data/P_verrucosa/RNAseq/E11_R2.fastp-trim.20230215.fq.gz Running DIAMOND BLASTx on /gscratch/srlab/sam/data/P_verrucosa/RNAseq/E11_R2.fastp-trim.20230215.fq.gz. diamond v2.1.1.155 (C) Max Planck Society for the Advancement of Science Documentation, support and updates available at http://www.diamondsearch.org Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021) #CPU threads: 40 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: Percentage range of top alignment score to report hits: 5 Opening the database... [0.309s] Database: /gscratch/srlab/blastdbs/20230215-ncbi-nr/20230215-ncbi-nr.dmnd (type: Diamond database, sequences: 526308523, letters: 207134680681) Block size = 15000000000 Opening the input file... [0.717s] Opening the output file... [0.878s] Loading query sequences... [58.79s] Masking queries... [14.519s] Algorithm: Double-indexed Building query histograms... [14.087s] Loading reference sequences... [32.168s] Masking reference... [32.141s] Initializing dictionary... [0.079s] Initializing temporary storage... [0.008s] Building reference histograms... [32.272s] Allocating buffers... [0.001s] Processing query block 1, reference block 1/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.654s] Building query seed array... [1.573s] Computing hash join... [6.197s] Masking low complexity seeds... [0.244s] Searching alignments... [54.725s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.947s] Building query seed array... [2.109s] Computing hash join... [5.92s] Masking low complexity seeds... [0.228s] Searching alignments... [36.548s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 1/2, index chunk 3/4. Building reference seed array... [14.209s] Building query seed array... [2.08s] Computing hash join... [6.264s] Masking low complexity seeds... [0.263s] Searching alignments... [31.453s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.265s] Building query seed array... [1.644s] Computing hash join... [5.949s] Masking low complexity seeds... [0.239s] Searching alignments... [28.317s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.278s] Building query seed array... [1.535s] Computing hash join... [5.534s] Masking low complexity seeds... [0.229s] Searching alignments... [30.704s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.653s] Building query seed array... [1.723s] Computing hash join... [5.601s] Masking low complexity seeds... [0.204s] Searching alignments... [22.964s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.394s] Building query seed array... [1.822s] Computing hash join... [6.02s] Masking low complexity seeds... [0.24s] Searching alignments... [25.862s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.472s] Building query seed array... [1.574s] Computing hash join... [5.581s] Masking low complexity seeds... [0.229s] Searching alignments... [22.255s] Deallocating memory... [0s] Deallocating buffers... [1.237s] Clearing query masking... [1.183s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [10.05s] Sorting trace points... [1.768s] Computing alignments... [43.43s] Deallocating buffers... [0.018s] Loading trace points... [0.124s] Sorting trace points... [1.329s] Computing alignments... [43.38s] Deallocating buffers... [0.019s] Loading trace points... [0.118s] Sorting trace points... [1.934s] Computing alignments... [43.628s] Deallocating buffers... [0.25s] Loading trace points... [0.127s] Sorting trace points... [1.357s] Computing alignments... [42.953s] Deallocating buffers... [0.02s] Loading trace points... [0.152s] Sorting trace points... [1.882s] Computing alignments... [45.905s] Deallocating buffers... [0.229s] Loading trace points... [0.121s] Sorting trace points... [1.399s] Computing alignments... [46.953s] Deallocating buffers... [0.022s] Loading trace points... [0.164s] Sorting trace points... [1.826s] Computing alignments... [46.814s] Deallocating buffers... [0.145s] Loading trace points... [0s] Sorting trace points... [1.433s] Computing alignments... [46.909s] Deallocating buffers... [0.027s] Loading trace points... [0s] [384.637s] Deallocating reference... [0.083s] Loading reference sequences... [30.925s] Masking reference... [31.581s] Initializing dictionary... [0.077s] Initializing temporary storage... [0.008s] Building reference histograms... [33.132s] Allocating buffers... [0s] Processing query block 1, reference block 2/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.441s] Building query seed array... [1.681s] Computing hash join... [6.261s] Masking low complexity seeds... [0.221s] Searching alignments... [54.251s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.75s] Building query seed array... [2.305s] Computing hash join... [6.46s] Masking low complexity seeds... [0.245s] Searching alignments... [35.452s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.575s] Building query seed array... [2.133s] Computing hash join... [6.447s] Masking low complexity seeds... [0.336s] Searching alignments... [30.864s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.3s] Building query seed array... [1.829s] Computing hash join... [6.416s] Masking low complexity seeds... [0.229s] Searching alignments... [27.717s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.393s] Building query seed array... [1.668s] Computing hash join... [6.159s] Masking low complexity seeds... [0.228s] Searching alignments... [29.262s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.312s] Building query seed array... [1.847s] Computing hash join... [6.173s] Masking low complexity seeds... [0.214s] Searching alignments... [23.269s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.48s] Building query seed array... [2.017s] Computing hash join... [6.407s] Masking low complexity seeds... [0.295s] Searching alignments... [26.075s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 2/2, index chunk 4/4. Building reference seed array... [9.951s] Building query seed array... [1.526s] Computing hash join... [6.152s] Masking low complexity seeds... [0.22s] Searching alignments... [21.519s] Deallocating memory... [0s] Deallocating buffers... [0.861s] Clearing query masking... [1.267s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [9.487s] Sorting trace points... [1.742s] Computing alignments... [43.269s] Deallocating buffers... [0.02s] Loading trace points... [0.194s] Sorting trace points... [1.644s] Computing alignments... [43.242s] Deallocating buffers... [0.022s] Loading trace points... [0.086s] Sorting trace points... [1.773s] Computing alignments... [43.576s] Deallocating buffers... [0.139s] Loading trace points... [0.132s] Sorting trace points... [1.699s] Computing alignments... [42.947s] Deallocating buffers... [0.022s] Loading trace points... [0.183s] Sorting trace points... [1.342s] Computing alignments... [45.856s] Deallocating buffers... [0.02s] Loading trace points... [0.174s] Sorting trace points... [1.427s] Computing alignments... [47.046s] Deallocating buffers... [0.021s] Loading trace points... [0.145s] Sorting trace points... [2.017s] Computing alignments... [46.772s] Deallocating buffers... [0.3s] Loading trace points... [0s] Sorting trace points... [1.941s] Computing alignments... [46.748s] Deallocating buffers... [0.167s] Loading trace points... [0s] [384.366s] Deallocating reference... [0.063s] Loading reference sequences... [29.122s] Masking reference... [30.931s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.008s] Building reference histograms... [32.616s] Allocating buffers... [0s] Processing query block 1, reference block 3/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.65s] Building query seed array... [1.642s] Computing hash join... [6.549s] Masking low complexity seeds... [0.499s] Searching alignments... [55.358s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.124s] Building query seed array... [2.178s] Computing hash join... [6.336s] Masking low complexity seeds... [0.224s] Searching alignments... [34.515s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.552s] Building query seed array... [2.224s] Computing hash join... [6.444s] Masking low complexity seeds... [0.283s] Searching alignments... [31.406s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.225s] Building query seed array... [1.761s] Computing hash join... [6.338s] Masking low complexity seeds... [0.225s] Searching alignments... [28.034s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 2/2, index chunk 1/4. Building reference seed array... [9.835s] Building query seed array... [1.569s] Computing hash join... [6.103s] Masking low complexity seeds... [0.218s] Searching alignments... [31.136s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.456s] Building query seed array... [1.861s] Computing hash join... [6.2s] Masking low complexity seeds... [0.216s] Searching alignments... [23.571s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.321s] Building query seed array... [1.887s] Computing hash join... [6.579s] Masking low complexity seeds... [0.277s] Searching alignments... [26.406s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 2/2, index chunk 4/4. Building reference seed array... [9.848s] Building query seed array... [1.552s] Computing hash join... [6.115s] Masking low complexity seeds... [0.222s] Searching alignments... [21.968s] Deallocating memory... [0s] Deallocating buffers... [0.951s] Clearing query masking... [1.23s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [9.284s] Sorting trace points... [1.784s] Computing alignments... [43.382s] Deallocating buffers... [0.019s] Loading trace points... [0.131s] Sorting trace points... [1.653s] Computing alignments... [43.2s] Deallocating buffers... [0.018s] Loading trace points... [0.198s] Sorting trace points... [1.682s] Computing alignments... [43.372s] Deallocating buffers... [0.018s] Loading trace points... [0.14s] Sorting trace points... [1.344s] Computing alignments... [42.878s] Deallocating buffers... [0.019s] Loading trace points... [0.169s] Sorting trace points... [2.003s] Computing alignments... [45.93s] Deallocating buffers... [0.169s] Loading trace points... [0.153s] Sorting trace points... [2.034s] Computing alignments... [47.189s] Deallocating buffers... [0.299s] Loading trace points... [0.161s] Sorting trace points... [1.844s] Computing alignments... [46.747s] Deallocating buffers... [0.02s] Loading trace points... [0s] Sorting trace points... [1.768s] Computing alignments... [46.756s] Deallocating buffers... [0.02s] Loading trace points... [0s] [384.621s] Deallocating reference... [0.056s] Loading reference sequences... [29.266s] Masking reference... [30.948s] Initializing dictionary... [0.077s] Initializing temporary storage... [0.007s] Building reference histograms... [32.459s] Allocating buffers... [0s] Processing query block 1, reference block 4/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.189s] Building query seed array... [1.672s] Computing hash join... [6.351s] Masking low complexity seeds... [0.422s] Searching alignments... [54.809s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.904s] Building query seed array... [2.336s] Computing hash join... [6.564s] Masking low complexity seeds... [0.234s] Searching alignments... [34.375s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.596s] Building query seed array... [2.201s] Computing hash join... [6.721s] Masking low complexity seeds... [0.234s] Searching alignments... [31.255s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.678s] Building query seed array... [1.773s] Computing hash join... [6.374s] Masking low complexity seeds... [0.246s] Searching alignments... [29.628s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 2/2, index chunk 1/4. Building reference seed array... [9.997s] Building query seed array... [1.519s] Computing hash join... [6.169s] Masking low complexity seeds... [0.212s] Searching alignments... [29.569s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.157s] Building query seed array... [1.914s] Computing hash join... [6.3s] Masking low complexity seeds... [0.214s] Searching alignments... [23.35s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.824s] Building query seed array... [1.977s] Computing hash join... [6.51s] Masking low complexity seeds... [0.285s] Searching alignments... [25.838s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.099s] Building query seed array... [1.634s] Computing hash join... [6.169s] Masking low complexity seeds... [0.217s] Searching alignments... [21.479s] Deallocating memory... [0s] Deallocating buffers... [1.153s] Clearing query masking... [1.254s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [9.184s] Sorting trace points... [1.669s] Computing alignments... [43.405s] Deallocating buffers... [0.019s] Loading trace points... [0.122s] Sorting trace points... [1.309s] Computing alignments... [43.231s] Deallocating buffers... [0.021s] Loading trace points... [0.103s] Sorting trace points... [1.797s] Computing alignments... [43.474s] Deallocating buffers... [0.132s] Loading trace points... [0.116s] Sorting trace points... [1.632s] Computing alignments... [43.676s] Deallocating buffers... [0.023s] Loading trace points... [0.137s] Sorting trace points... [1.741s] Computing alignments... [45.967s] Deallocating buffers... [0.019s] Loading trace points... [0.112s] Sorting trace points... [1.5s] Computing alignments... [47.158s] Deallocating buffers... [0.021s] Loading trace points... [0.139s] Sorting trace points... [1.809s] Computing alignments... [46.865s] Deallocating buffers... [0.019s] Loading trace points... [0s] Sorting trace points... [1.362s] Computing alignments... [46.885s] Deallocating buffers... [0.021s] Loading trace points... [0s] [383.782s] Deallocating reference... [0.063s] Loading reference sequences... [29.739s] Masking reference... [32.175s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.007s] Building reference histograms... [32.984s] Allocating buffers... [0s] Processing query block 1, reference block 5/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.491s] Building query seed array... [1.637s] Computing hash join... [6.457s] Masking low complexity seeds... [0.231s] Searching alignments... [54.961s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.765s] Building query seed array... [2.461s] Computing hash join... [6.497s] Masking low complexity seeds... [0.234s] Searching alignments... [34.913s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.907s] Building query seed array... [2.212s] Computing hash join... [6.401s] Masking low complexity seeds... [0.237s] Searching alignments... [32.817s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.1s] Building query seed array... [1.689s] Computing hash join... [6.374s] Masking low complexity seeds... [0.239s] Searching alignments... [28.878s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 2/2, index chunk 1/4. Building reference seed array... [9.939s] Building query seed array... [1.681s] Computing hash join... [6.128s] Masking low complexity seeds... [0.241s] Searching alignments... [31.317s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.784s] Building query seed array... [1.895s] Computing hash join... [6.159s] Masking low complexity seeds... [0.202s] Searching alignments... [23.163s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.614s] Building query seed array... [2.016s] Computing hash join... [6.614s] Masking low complexity seeds... [0.289s] Searching alignments... [26.741s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.322s] Building query seed array... [1.539s] Computing hash join... [6.028s] Masking low complexity seeds... [0.211s] Searching alignments... [21.807s] Deallocating memory... [0s] Deallocating buffers... [1.15s] Clearing query masking... [1.267s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [9.062s] Sorting trace points... [1.742s] Computing alignments... [43.181s] Deallocating buffers... [0.021s] Loading trace points... [0.123s] Sorting trace points... [1.316s] Computing alignments... [43.015s] Deallocating buffers... [0.019s] Loading trace points... [0.146s] Sorting trace points... [1.264s] Computing alignments... [43.358s] Deallocating buffers... [0.021s] Loading trace points... [0.142s] Sorting trace points... [1.737s] Computing alignments... [42.975s] Deallocating buffers... [0.198s] Loading trace points... [0.218s] Sorting trace points... [1.785s] Computing alignments... [45.707s] Deallocating buffers... [0.019s] Loading trace points... [0.158s] Sorting trace points... [1.474s] Computing alignments... [46.742s] Deallocating buffers... [0.021s] Loading trace points... [0.179s] Sorting trace points... [1.671s] Computing alignments... [46.494s] Deallocating buffers... [0.098s] Loading trace points... [0s] Sorting trace points... [1.68s] Computing alignments... [46.444s] Deallocating buffers... [0.02s] Loading trace points... [0s] [381.254s] Deallocating reference... [0.063s] Loading reference sequences... [30.066s] Masking reference... [32.155s] Initializing dictionary... [0.077s] Initializing temporary storage... [0.008s] Building reference histograms... [32.706s] Allocating buffers... [0s] Processing query block 1, reference block 6/14, shape 1/2, index chunk 1/4. Building reference seed array... [9.996s] Building query seed array... [1.62s] Computing hash join... [6.309s] Masking low complexity seeds... [0.233s] Searching alignments... [52.875s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.85s] Building query seed array... [2.476s] Computing hash join... [6.217s] Masking low complexity seeds... [0.228s] Searching alignments... slurmstepd: error: *** JOB 4499309 ON n2334 CANCELLED AT 2023-03-09T14:15:08 ***