Generating MD5 checksum for /gscratch/srlab/sam/data/P_verrucosa/RNAseq/C17_R1.fastp-trim.20230215.fq.gz... 72a586656d07e43cd07dcc2f95174265 /gscratch/srlab/sam/data/P_verrucosa/RNAseq/C17_R1.fastp-trim.20230215.fq.gz Running DIAMOND BLASTx on /gscratch/srlab/sam/data/P_verrucosa/RNAseq/C17_R1.fastp-trim.20230215.fq.gz. diamond v2.1.1.155 (C) Max Planck Society for the Advancement of Science Documentation, support and updates available at http://www.diamondsearch.org Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021) #CPU threads: 40 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: Percentage range of top alignment score to report hits: 5 Opening the database... [0.577s] Database: /gscratch/srlab/blastdbs/20230215-ncbi-nr/20230215-ncbi-nr.dmnd (type: Diamond database, sequences: 526308523, letters: 207134680681) Block size = 15000000000 Opening the input file... [0.672s] Opening the output file... [0s] Loading query sequences... [76.561s] Masking queries... [19.43s] Algorithm: Double-indexed Building query histograms... [17.442s] Loading reference sequences... [29.259s] Masking reference... [30.938s] Initializing dictionary... [0.08s] Initializing temporary storage... [0.008s] Building reference histograms... [32.967s] Allocating buffers... [0s] Processing query block 1, reference block 1/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.22s] Building query seed array... [2.109s] Computing hash join... [6.561s] Masking low complexity seeds... [0.398s] Searching alignments... [85.05s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.51s] Building query seed array... [2.971s] Computing hash join... [7.18s] Masking low complexity seeds... [0.234s] Searching alignments... [52.256s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.83s] Building query seed array... [3.003s] Computing hash join... [6.776s] Masking low complexity seeds... [0.26s] Searching alignments... [45.223s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.2s] Building query seed array... [2.383s] Computing hash join... [6.493s] Masking low complexity seeds... [0.22s] Searching alignments... [40.744s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.661s] Building query seed array... [2.207s] Computing hash join... [6.288s] Masking low complexity seeds... [0.217s] Searching alignments... [40.754s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.324s] Building query seed array... [2.318s] Computing hash join... [6.375s] Masking low complexity seeds... [0.213s] Searching alignments... [33.065s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.498s] Building query seed array... [2.474s] Computing hash join... [6.346s] Masking low complexity seeds... [0.217s] Searching alignments... [35.423s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.287s] Building query seed array... [2.021s] Computing hash join... [6.248s] Masking low complexity seeds... [0.206s] Searching alignments... [30.596s] Deallocating memory... [0s] Deallocating buffers... [1.446s] Clearing query masking... [1.668s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [7.044s] Sorting trace points... [1.241s] Computing alignments... [32.505s] Deallocating buffers... [0.016s] Loading trace points... [0.137s] Sorting trace points... [1.26s] Computing alignments... [32.616s] Deallocating buffers... [0.055s] Loading trace points... [0.062s] Sorting trace points... [1.241s] Computing alignments... [32.058s] Deallocating buffers... [0.014s] Loading trace points... [0.139s] Sorting trace points... [1.123s] Computing alignments... [33.643s] Deallocating buffers... [0.017s] Loading trace points... [0.002s] Sorting trace points... [1.227s] Computing alignments... [33.738s] Deallocating buffers... [0.017s] Loading trace points... [0.037s] Sorting trace points... [1.32s] Computing alignments... [33.957s] Deallocating buffers... [0.015s] Loading trace points... [0.09s] Sorting trace points... [1.253s] Computing alignments... [33.259s] Deallocating buffers... [0.014s] Loading trace points... [0.081s] Sorting trace points... [1.107s] Computing alignments... [33.152s] Deallocating buffers... [0.015s] Loading trace points... [0.083s] Sorting trace points... [1.059s] Computing alignments... [32.881s] Deallocating buffers... [0.016s] Loading trace points... [0.057s] Sorting trace points... [1.237s] Computing alignments... [32.841s] Deallocating buffers... [0.014s] Loading trace points... [0.087s] Sorting trace points... [1.244s] Computing alignments... [33.141s] Deallocating buffers... [0.014s] Loading trace points... [0s] Sorting trace points... [1.25s] Computing alignments... [33.054s] Deallocating buffers... [0.014s] Loading trace points... [0.089s] Sorting trace points... [1.115s] Computing alignments... [33.243s] Deallocating buffers... [0.015s] Loading trace points... [0.106s] Sorting trace points... [1.279s] Computing alignments... [33.316s] Deallocating buffers... [0.014s] Loading trace points... [0.045s] Sorting trace points... [0.936s] Computing alignments... [33.344s] Deallocating buffers... [0.016s] Loading trace points... [0s] Sorting trace points... [1.257s] Computing alignments... [33.085s] Deallocating buffers... [0.014s] Loading trace points... [0s] [557.496s] Deallocating reference... [0.057s] Loading reference sequences... [29.56s] Masking reference... [30.943s] Initializing dictionary... [0.077s] Initializing temporary storage... [0.008s] Building reference histograms... [32.578s] Allocating buffers... [0s] Processing query block 1, reference block 2/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.614s] Building query seed array... [2.201s] Computing hash join... [6.275s] Masking low complexity seeds... [0.222s] Searching alignments... [81.194s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 1/2, index chunk 2/4. Building reference seed array... [13.351s] Building query seed array... [2.983s] Computing hash join... [6.082s] Masking low complexity seeds... [0.218s] Searching alignments... [53.467s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 1/2, index chunk 3/4. Building reference seed array... [14.39s] Building query seed array... [2.979s] Computing hash join... [6.01s] Masking low complexity seeds... [0.243s] Searching alignments... [44.179s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.578s] Building query seed array... [2.296s] Computing hash join... [5.919s] Masking low complexity seeds... [0.229s] Searching alignments... [39.599s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.528s] Building query seed array... [2.279s] Computing hash join... [5.771s] Masking low complexity seeds... [0.216s] Searching alignments... [40.23s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.963s] Building query seed array... [2.439s] Computing hash join... [5.523s] Masking low complexity seeds... [0.242s] Searching alignments... [31.427s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.687s] Building query seed array... [2.68s] Computing hash join... [5.571s] Masking low complexity seeds... [0.221s] Searching alignments... [35.036s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.471s] Building query seed array... [2.084s] Computing hash join... [5.75s] Masking low complexity seeds... [0.211s] Searching alignments... [30.653s] Deallocating memory... [0s] Deallocating buffers... [1.973s] Clearing query masking... [1.613s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [6.454s] Sorting trace points... [1.322s] Computing alignments... [32.301s] Deallocating buffers... [0.016s] Loading trace points... [0.042s] Sorting trace points... [0.944s] Computing alignments... [32.434s] Deallocating buffers... [0.015s] Loading trace points... [0.124s] Sorting trace points... [1.08s] Computing alignments... [31.833s] Deallocating buffers... [0.014s] Loading trace points... [0.059s] Sorting trace points... [1.17s] Computing alignments... [33.232s] Deallocating buffers... [0.014s] Loading trace points... [0.116s] Sorting trace points... [1.269s] Computing alignments... [33.286s] Deallocating buffers... [0.014s] Loading trace points... [0.078s] Sorting trace points... [0.917s] Computing alignments... [33.479s] Deallocating buffers... [0.022s] Loading trace points... [0.092s] Sorting trace points... [1.263s] Computing alignments... [32.794s] Deallocating buffers... [0.017s] Loading trace points... [0.065s] Sorting trace points... [1.116s] Computing alignments... [33.384s] Deallocating buffers... [0.035s] Loading trace points... [0.088s] Sorting trace points... [1.266s] Computing alignments... [32.847s] Deallocating buffers... [0.015s] Loading trace points... [0.046s] Sorting trace points... [1.271s] Computing alignments... [32.567s] Deallocating buffers... [0.017s] Loading trace points... [0.066s] Sorting trace points... [1.053s] Computing alignments... [32.669s] Deallocating buffers... [0.016s] Loading trace points... [0.088s] Sorting trace points... [1.257s] Computing alignments... [32.657s] Deallocating buffers... [0.018s] Loading trace points... [0.001s] Sorting trace points... [0.88s] Computing alignments... [33.023s] Deallocating buffers... [0.016s] Loading trace points... [0.08s] Sorting trace points... [1.246s] Computing alignments... [33.012s] Deallocating buffers... [0.014s] Loading trace points... [0.055s] Sorting trace points... [1.22s] Computing alignments... [33.05s] Deallocating buffers... [0.014s] Loading trace points... [0s] Sorting trace points... [1.271s] Computing alignments... [32.868s] Deallocating buffers... [0.017s] Loading trace points... [0s] [551.833s] Deallocating reference... [0.062s] Loading reference sequences... [30.341s] Masking reference... [30.972s] Initializing dictionary... [0.076s] Initializing temporary storage... [0.007s] Building reference histograms... [32.932s] Allocating buffers... [0s] Processing query block 1, reference block 3/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.044s] Building query seed array... [2.123s] Computing hash join... [6.671s] Masking low complexity seeds... [0.224s] Searching alignments... [80.993s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.804s] Building query seed array... [3.071s] Computing hash join... [6.758s] Masking low complexity seeds... [0.261s] Searching alignments... [52.679s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 1/2, index chunk 3/4. Building reference seed array... [14.149s] Building query seed array... [2.838s] Computing hash join... [6.64s] Masking low complexity seeds... [0.223s] Searching alignments... [45.757s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.506s] Building query seed array... [2.315s] Computing hash join... [7.264s] Masking low complexity seeds... [0.223s] Searching alignments... [42.058s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.039s] Building query seed array... [2.185s] Computing hash join... [6.352s] Masking low complexity seeds... [0.206s] Searching alignments... [40.809s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.625s] Building query seed array... [2.385s] Computing hash join... [6.305s] Masking low complexity seeds... [0.226s] Searching alignments... [32.695s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.278s] Building query seed array... [2.623s] Computing hash join... [6.352s] Masking low complexity seeds... [0.226s] Searching alignments... [37.272s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.364s] Building query seed array... [2.167s] Computing hash join... [6.169s] Masking low complexity seeds... [0.219s] Searching alignments... [30.849s] Deallocating memory... [0s] Deallocating buffers... [1.527s] Clearing query masking... [1.762s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [6.539s] Sorting trace points... [1.327s] Computing alignments... [32.309s] Deallocating buffers... [0.016s] Loading trace points... [0.093s] Sorting trace points... [1.22s] Computing alignments... [32.62s] Deallocating buffers... [0.064s] Loading trace points... [0.061s] Sorting trace points... [0.878s] Computing alignments... [32.028s] Deallocating buffers... [0.021s] Loading trace points... [0.109s] Sorting trace points... [1.533s] Computing alignments... [33.614s] Deallocating buffers... [0.014s] Loading trace points... [0s] Sorting trace points... [0.926s] Computing alignments... [33.481s] Deallocating buffers... [0.017s] Loading trace points... [0.002s] Sorting trace points... [1.295s] Computing alignments... [33.629s] Deallocating buffers... [0.024s] Loading trace points... [0.085s] Sorting trace points... [1.26s] Computing alignments... [33.047s] Deallocating buffers... [0.017s] Loading trace points... [0.071s] Sorting trace points... [1.025s] Computing alignments... [33.046s] Deallocating buffers... [0.017s] Loading trace points... [0.063s] Sorting trace points... [0.953s] Computing alignments... [32.934s] Deallocating buffers... [0.015s] Loading trace points... [0.082s] Sorting trace points... [0.991s] Computing alignments... [32.714s] Deallocating buffers... [0.016s] Loading trace points... [0.805s] Sorting trace points... [1.277s] Computing alignments... [32.778s] Deallocating buffers... [0.014s] Loading trace points... [0.105s] Sorting trace points... [1.232s] Computing alignments... [32.785s] Deallocating buffers... [0.017s] Loading trace points... [0.039s] Sorting trace points... [1.254s] Computing alignments... [33.041s] Deallocating buffers... [0.014s] Loading trace points... [0.101s] Sorting trace points... [1.276s] Computing alignments... [33.316s] Deallocating buffers... [0.015s] Loading trace points... [0.095s] Sorting trace points... [1.29s] Computing alignments... [33.297s] Deallocating buffers... [0.017s] Loading trace points... [0s] Sorting trace points... [1.209s] Computing alignments... [33.137s] Deallocating buffers... [0.032s] Loading trace points... [0s] [555.568s] Deallocating reference... [0.056s] Loading reference sequences... [29.775s] Masking reference... [32.189s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.007s] Building reference histograms... [32.411s] Allocating buffers... [0s] Processing query block 1, reference block 4/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.251s] Building query seed array... [2.191s] Computing hash join... [7.135s] Masking low complexity seeds... [0.524s] Searching alignments... [80.875s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 1/2, index chunk 2/4. Building reference seed array... [13.05s] Building query seed array... [2.79s] Computing hash join... [7.243s] Masking low complexity seeds... [0.235s] Searching alignments... [51.871s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.77s] Building query seed array... [3.044s] Computing hash join... [6.921s] Masking low complexity seeds... [0.233s] Searching alignments... [46.687s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.359s] Building query seed array... [2.33s] Computing hash join... [6.642s] Masking low complexity seeds... [0.23s] Searching alignments... [41.464s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.602s] Building query seed array... [2.208s] Computing hash join... [6.307s] Masking low complexity seeds... [0.218s] Searching alignments... [40.612s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.426s] Building query seed array... [2.358s] Computing hash join... [6.467s] Masking low complexity seeds... [0.239s] Searching alignments... [34.105s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.882s] Building query seed array... [2.684s] Computing hash join... [6.271s] Masking low complexity seeds... [0.247s] Searching alignments... [37.185s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.486s] Building query seed array... [2.009s] Computing hash join... [6.42s] Masking low complexity seeds... [0.226s] Searching alignments... [29.765s] Deallocating memory... [0s] Deallocating buffers... [1.464s] Clearing query masking... [1.662s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [6.519s] Sorting trace points... [1.31s] Computing alignments... [32.436s] Deallocating buffers... [0.014s] Loading trace points... [0.082s] Sorting trace points... [1.221s] Computing alignments... [32.505s] Deallocating buffers... [0.017s] Loading trace points... [0.106s] Sorting trace points... [1.205s] Computing alignments... [31.992s] Deallocating buffers... [0.017s] Loading trace points... [0.133s] Sorting trace points... [1.204s] Computing alignments... [33.609s] Deallocating buffers... [0.015s] Loading trace points... [0.069s] Sorting trace points... [0.986s] Computing alignments... [33.681s] Deallocating buffers... [0.016s] Loading trace points... [0.001s] Sorting trace points... [1.26s] Computing alignments... [33.921s] Deallocating buffers... [0.015s] Loading trace points... [0.075s] Sorting trace points... [1.237s] Computing alignments... [33.172s] Deallocating buffers... [0.017s] Loading trace points... [0.079s] Sorting trace points... [1.258s] Computing alignments... [33.025s] Deallocating buffers... [0.015s] Loading trace points... [0.081s] Sorting trace points... [0.954s] Computing alignments... [32.921s] Deallocating buffers... [0.015s] Loading trace points... [0.066s] Sorting trace points... [1.283s] Computing alignments... [32.888s] Deallocating buffers... [0.015s] Loading trace points... [0.064s] Sorting trace points... [1.262s] Computing alignments... [32.941s] Deallocating buffers... [0.018s] Loading trace points... [0.104s] Sorting trace points... [0.931s] Computing alignments... [32.92s] Deallocating buffers... [0.016s] Loading trace points... [0.068s] Sorting trace points... [1.041s] Computing alignments... [33.133s] Deallocating buffers... [0.016s] Loading trace points... [0.075s] Sorting trace points... [0.945s] Computing alignments... [33.186s] Deallocating buffers... [0.016s] Loading trace points... [0.054s] Sorting trace points... [1.104s] Computing alignments... [33.292s] Deallocating buffers... [0.017s] Loading trace points... [0s] Sorting trace points... [1.133s] Computing alignments... [33.244s] Deallocating buffers... [0.024s] Loading trace points... [0s] [555.308s] Deallocating reference... [0.066s] Loading reference sequences... [30.456s] Masking reference... [30.976s] Initializing dictionary... [0.077s] Initializing temporary storage... [0.007s] Building reference histograms... [32.974s] Allocating buffers... [0s] Processing query block 1, reference block 5/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.384s] Building query seed array... [2.035s] Computing hash join... [6.631s] Masking low complexity seeds... [0.514s] Searching alignments... [79.776s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 1/2, index chunk 2/4. Building reference seed array... [13.01s] Building query seed array... [2.894s] Computing hash join... [6.63s] Masking low complexity seeds... [0.27s] Searching alignments... [52.639s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 1/2, index chunk 3/4. Building reference seed array... [14.747s] Building query seed array... [2.954s] Computing hash join... [6.583s] Masking low complexity seeds... [0.265s] Searching alignments... [43.757s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.683s] Building query seed array... [2.328s] Computing hash join... [6.493s] Masking low complexity seeds... [0.246s] Searching alignments... [39.154s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.573s] Building query seed array... [2.216s] Computing hash join... [6.024s] Masking low complexity seeds... [0.211s] Searching alignments... [40.454s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.899s] Building query seed array... [2.46s] Computing hash join... [6.249s] Masking low complexity seeds... [0.236s] Searching alignments... [32.321s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.476s] Building query seed array... [2.495s] Computing hash join... [6.028s] Masking low complexity seeds... [0.216s] Searching alignments... [34.959s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.537s] Building query seed array... [2.153s] Computing hash join... [6.153s] Masking low complexity seeds... [0.223s] Searching alignments... [29.902s] Deallocating memory... [0s] Deallocating buffers... [1.923s] Clearing query masking... [1.525s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [6.794s] Sorting trace points... [1.186s] Computing alignments... [32.472s] Deallocating buffers... [0.015s] Loading trace points... [0.036s] Sorting trace points... [1.232s] Computing alignments... [32.499s] Deallocating buffers... [0.014s] Loading trace points... [0.042s] Sorting trace points... [1.098s] Computing alignments... [31.963s] Deallocating buffers... [0.021s] Loading trace points... [0.06s] Sorting trace points... [0.951s] Computing alignments... [33.522s] Deallocating buffers... [0.016s] Loading trace points... [0.081s] Sorting trace points... [1.431s] Computing alignments... [33.959s] Deallocating buffers... [0.115s] Loading trace points... [0s] Sorting trace points... [1.306s] Computing alignments... [33.824s] Deallocating buffers... [0.018s] Loading trace points... [0.089s] Sorting trace points... [1.307s] Computing alignments... [33.031s] Deallocating buffers... [0.014s] Loading trace points... [0.095s] Sorting trace points... [1.162s] Computing alignments... [33.07s] Deallocating buffers... [0.014s] Loading trace points... [0.046s] Sorting trace points... [0.977s] Computing alignments... [32.697s] Deallocating buffers... [0.015s] Loading trace points... [0.054s] Sorting trace points... [1.297s] Computing alignments... [32.665s] Deallocating buffers... [0.015s] Loading trace points... [0.056s] Sorting trace points... [0.891s] Computing alignments... [32.725s] Deallocating buffers... [0.015s] Loading trace points... [0.076s] Sorting trace points... [1.277s] Computing alignments... [32.715s] Deallocating buffers... [0.018s] Loading trace points... [0.063s] Sorting trace points... [1.232s] Computing alignments... [32.941s] Deallocating buffers... [0.107s] Loading trace points... [0.104s] Sorting trace points... [1.22s] Computing alignments... [33.178s] Deallocating buffers... [0.015s] Loading trace points... [0.046s] Sorting trace points... [1.054s] Computing alignments... [33.192s] Deallocating buffers... [0.015s] Loading trace points... [0s] Sorting trace points... [0.975s] Computing alignments... [33.115s] Deallocating buffers... [0.022s] Loading trace points... [0s] [554.428s] Deallocating reference... [0.069s] Loading reference sequences... [267.294s] Masking reference... [31.573s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.008s] Building reference histograms... [32.116s] Allocating buffers... [0s] Processing query block 1, reference block 6/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.229s] Building query seed array... [2.133s] Computing hash join... [6.999s] Masking low complexity seeds... [0.435s] Searching alignments... [79.042s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.719s] Building query seed array... [2.853s] Computing hash join... [6.627s] Masking low complexity seeds... [0.251s] Searching alignments... [52.912s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.882s] Building query seed array... [2.915s] Computing hash join... [6.673s] Masking low complexity seeds... [0.231s] Searching alignments... [44.59s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.65s] Building query seed array... [2.325s] Computing hash join... [6.666s] Masking low complexity seeds... [0.226s] Searching alignments... [39.63s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.267s] Building query seed array... [2.233s] Computing hash join... [6.304s] Masking low complexity seeds... [0.205s] Searching alignments... [39.459s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.622s] Building query seed array... [2.315s] Computing hash join... [6.596s] Masking low complexity seeds... [0.222s] Searching alignments... [33.143s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.499s] Building query seed array... [2.656s] Computing hash join... [6.552s] Masking low complexity seeds... [0.216s] Searching alignments... [36.123s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 2/2, index chunk 4/4. Building reference seed array... [11.018s] Building query seed array... [2.176s] Computing hash join... [6.436s] Masking low complexity seeds... [0.215s] Searching alignments... [29.661s] Deallocating memory... [0s] Deallocating buffers... [1.669s] Clearing query masking... [1.592s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [6.496s] Sorting trace points... [1.286s] Computing alignments... [31.848s] Deallocating buffers... [0.014s] Loading trace points... [0.048s] Sorting trace points... [0.949s] Computing alignments... [31.978s] Deallocating buffers... [0.015s] Loading trace points... [0.118s] Sorting trace points... [1.193s] Computing alignments... [31.403s] Deallocating buffers... [0.013s] Loading trace points... [0.058s] Sorting trace points... [0.946s] Computing alignments... [32.898s] Deallocating buffers... [0.016s] Loading trace points... [0.103s] Sorting trace points... [0.883s] Computing alignments... [32.982s] Deallocating buffers... [0.016s] Loading trace points... [1.319s] Sorting trace points... [1.181s] Computing alignments... [33.264s] Deallocating buffers... [0.017s] Loading trace points... [0.07s] Sorting trace points... [1.274s] Computing alignments... [32.482s] Deallocating buffers... [0.014s] Loading trace points... [0.054s] Sorting trace points... [0.954s] Computing alignments... [32.482s] Deallocating buffers... [0.015s] Loading trace points... [0.072s] Sorting trace points... [1.261s] Computing alignments... [32.468s] Deallocating buffers... [0.017s] Loading trace points... [0.062s] Sorting trace points... [1.202s] Computing alignments... [32.481s] Deallocating buffers... [0.014s] Loading trace points... [0.072s] Sorting trace points... [1.402s] Computing alignments... [32.621s] Deallocating buffers... [0.17s] Loading trace points... [0.09s] Sorting trace points... [1.273s] Computing alignments... [32.56s] Deallocating buffers... [0.034s] Loading trace points... [0.124s] Sorting trace points... [1.31s] Computing alignments... [32.764s] Deallocating buffers... [0.023s] Loading trace points... [0.087s] Sorting trace points... [1.093s] Computing alignments... [32.899s] Deallocating buffers... [0.016s] Loading trace points... [0.103s] Sorting trace points... [1.053s] Computing alignments... [32.978s] Deallocating buffers... [0.017s] Loading trace points... [0s] Sorting trace points... [1.256s] Computing alignments... [32.636s] Deallocating buffers... [0.014s] Loading trace points... [0s] [549.797s] Deallocating reference... [0.066s] Loading reference sequences... [30.385s] Masking reference... [32.226s] Initializing dictionary... [0.076s] Initializing temporary storage... [0.006s] Building reference histograms... [32.233s] Allocating buffers... [0.001s] Processing query block 1, reference block 7/14, shape 1/2, index chunk 1/4. Building reference seed array... [9.857s] Building query seed array... [2.137s] Computing hash join... [6.961s] Masking low complexity seeds... [0.234s] Searching alignments... [81.8s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.668s] Building query seed array... [3.127s] Computing hash join... [6.873s] Masking low complexity seeds... [0.258s] Searching alignments... [53.758s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.548s] Building query seed array... [2.975s] Computing hash join... [6.606s] Masking low complexity seeds... [0.252s] Searching alignments... [45.077s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.296s] Building query seed array... [2.373s] Computing hash join... [7.144s] Masking low complexity seeds... [0.365s] Searching alignments... [39.892s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.429s] Building query seed array... [2.165s] Computing hash join... [6.405s] Masking low complexity seeds... [0.21s] Searching alignments... [40.394s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.544s] Building query seed array... [2.534s] Computing hash join... [6.476s] Masking low complexity seeds... [0.222s] Searching alignments... [32.235s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.799s] Building query seed array... [2.685s] Computing hash join... [6.343s] Masking low complexity seeds... [0.209s] Searching alignments... [36.056s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.223s] Building query seed array... [2.213s] Computing hash join... [6.417s] Masking low complexity seeds... [0.213s] Searching alignments... [30.571s] Deallocating memory... [0s] Deallocating buffers... [1.767s] Clearing query masking... [1.599s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [6.963s] Sorting trace points... [1.338s] Computing alignments... [32.451s] Deallocating buffers... [0.015s] Loading trace points... [0.06s] Sorting trace points... [1.222s] Computing alignments... [32.59s] Deallocating buffers... [0.014s] Loading trace points... [0.064s] Sorting trace points... [1.627s] Computing alignments... [31.958s] Deallocating buffers... [0.013s] Loading trace points... [0.064s] Sorting trace points... [0.95s] Computing alignments... [33.5s] Deallocating buffers... [0.015s] Loading trace points... [0.001s] Sorting trace points... [0.961s] Computing alignments... [33.548s] Deallocating buffers... [0.016s] Loading trace points... [0.047s] Sorting trace points... [1.285s] Computing alignments... [33.973s] Deallocating buffers... [0.018s] Loading trace points... [0.123s] Sorting trace points... [1.413s] Computing alignments... [33.279s] Deallocating buffers... [0.219s] Loading trace points... [0.092s] Sorting trace points... [1.089s] Computing alignments... [33.121s] Deallocating buffers... [0.015s] Loading trace points... [0.069s] Sorting trace points... [0.946s] Computing alignments... [32.935s] Deallocating buffers... [0.015s] Loading trace points... [0.235s] Sorting trace points... [1.321s] Computing alignments... [32.848s] Deallocating buffers... [0.017s] Loading trace points... [0.067s] Sorting trace points... [1.226s] Computing alignments... [32.961s] Deallocating buffers... [0.014s] Loading trace points... [0.084s] Sorting trace points... [1.14s] Computing alignments... [32.905s] Deallocating buffers... [0.017s] Loading trace points... [0.043s] Sorting trace points... [1.274s] Computing alignments... [33.251s] Deallocating buffers... [0.018s] Loading trace points... [0.097s] Sorting trace points... [1.029s] Computing alignments... [33.266s] Deallocating buffers... [0.016s] Loading trace points... [0.06s] Sorting trace points... [1.19s] Computing alignments... [33.304s] Deallocating buffers... [0.017s] Loading trace points... [0s] Sorting trace points... [1.268s] Computing alignments... [33.111s] Deallocating buffers... [0.147s] Loading trace points... [0s] [557.174s] Deallocating reference... [0.064s] Loading reference sequences... [29.285s] Masking reference... [32.206s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.007s] Building reference histograms... [32.122s] Allocating buffers... [0s] Processing query block 1, reference block 8/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.488s] Building query seed array... [2.137s] Computing hash join... [7.036s] Masking low complexity seeds... [0.222s] Searching alignments... [80.988s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 1/2, index chunk 2/4. Building reference seed array... [13.234s] Building query seed array... [3.079s] Computing hash join... [6.642s] Masking low complexity seeds... [0.237s] Searching alignments... [53.654s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 1/2, index chunk 3/4. Building reference seed array... [14.359s] Building query seed array... [2.75s] Computing hash join... [6.54s] Masking low complexity seeds... [0.228s] Searching alignments... [45.019s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.736s] Building query seed array... [2.349s] Computing hash join... [6.857s] Masking low complexity seeds... [0.428s] Searching alignments... [40.199s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.587s] Building query seed array... [1.969s] Computing hash join... [6.766s] Masking low complexity seeds... [0.219s] Searching alignments... [40.068s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 2/2, index chunk 2/4. Building reference seed array... [13.077s] Building query seed array... [2.575s] Computing hash join... [6.851s] Masking low complexity seeds... [0.212s] Searching alignments... [31.917s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.718s] Building query seed array... [2.579s] Computing hash join... [6.943s] Masking low complexity seeds... [0.211s] Searching alignments... [36.041s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.162s] Building query seed array... [2.104s] Computing hash join... [6.969s] Masking low complexity seeds... [0.215s] Searching alignments... [31.028s] Deallocating memory... [0s] Deallocating buffers... [1.78s] Clearing query masking... [1.599s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [6.609s] Sorting trace points... [1.384s] Computing alignments... [32.001s] Deallocating buffers... [0.014s] Loading trace points... [0.099s] Sorting trace points... [1.226s] Computing alignments... [32.168s] Deallocating buffers... [0.013s] Loading trace points... [0.081s] Sorting trace points... [0.975s] Computing alignments... [31.757s] Deallocating buffers... [0.016s] Loading trace points... [0.065s] Sorting trace points... [1.117s] Computing alignments... [33.147s] Deallocating buffers... [0.015s] Loading trace points... [0s] Sorting trace points... [1.372s] Computing alignments... [33.338s] Deallocating buffers... [0.079s] Loading trace points... [0.041s] Sorting trace points... [1.006s] Computing alignments... [33.507s] Deallocating buffers... [0.016s] Loading trace points... [0.365s] Sorting trace points... [1.807s] Computing alignments... [32.822s] Deallocating buffers... [0.014s] Loading trace points... [0.115s] Sorting trace points... [1.26s] Computing alignments... [32.807s] Deallocating buffers... [0.014s] Loading trace points... [0.064s] Sorting trace points... [1.444s] Computing alignments... [32.817s] Deallocating buffers... [0.119s] Loading trace points... [0.061s] Sorting trace points... [1.29s] Computing alignments... [32.554s] Deallocating buffers... [0.014s] Loading trace points... [0.094s] Sorting trace points... [1.114s] Computing alignments... [32.758s] Deallocating buffers... [0.017s] Loading trace points... [0s] Sorting trace points... [1.067s] Computing alignments... [32.795s] Deallocating buffers... [0.015s] Loading trace points... [0.047s] Sorting trace points... [1.258s] Computing alignments... [32.918s] Deallocating buffers... [0.014s] Loading trace points... [0.082s] Sorting trace points... [1.236s] Computing alignments... [33.011s] Deallocating buffers... [0.014s] Loading trace points... [0.079s] Sorting trace points... [1.344s] Computing alignments... [33.125s] Deallocating buffers... [0.017s] Loading trace points... [0s] Sorting trace points... [1.363s] Computing alignments... [33.122s] Deallocating buffers... [0.225s] Loading trace points... [0s] [553.599s] Deallocating reference... [0.07s] Loading reference sequences... [34.797s] Masking reference... [31.612s] Initializing dictionary... [0.077s] Initializing temporary storage... [0.006s] Building reference histograms... [32.496s] Allocating buffers... [0.001s] Processing query block 1, reference block 9/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.212s] Building query seed array... [2.054s] Computing hash join... [7.029s] Masking low complexity seeds... [0.236s] Searching alignments... [79.823s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 1/2, index chunk 2/4. Building reference seed array... [13.11s] Building query seed array... [3.217s] Computing hash join... [6.632s] Masking low complexity seeds... [0.226s] Searching alignments... [52.508s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.676s] Building query seed array... [2.847s] Computing hash join... [6.619s] Masking low complexity seeds... [0.232s] Searching alignments... [45.155s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.501s] Building query seed array... [2.292s] Computing hash join... [6.941s] Masking low complexity seeds... [0.226s] Searching alignments... [41.167s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.385s] Building query seed array... [2.221s] Computing hash join... [6.958s] Masking low complexity seeds... [0.275s] Searching alignments... [39.786s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 2/2, index chunk 2/4. Building reference seed array... [13.095s] Building query seed array... [2.487s] Computing hash join... [6.394s] Masking low complexity seeds... [0.212s] Searching alignments... [32.6s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.866s] Building query seed array... [2.536s] Computing hash join... [6.873s] Masking low complexity seeds... [0.209s] Searching alignments... [36.392s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.443s] Building query seed array... [2.187s] Computing hash join... [6.737s] Masking low complexity seeds... [0.259s] Searching alignments... [30.547s] Deallocating memory... [0s] Deallocating buffers... [1.834s] Clearing query masking... [1.602s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [6.374s] Sorting trace points... [1.341s] Computing alignments... [32.146s] Deallocating buffers... [0.016s] Loading trace points... [0.054s] Sorting trace points... [1.051s] Computing alignments... [32.432s] Deallocating buffers... [0.015s] Loading trace points... [0.051s] Sorting trace points... [1.177s] Computing alignments... [31.849s] Deallocating buffers... [0.017s] Loading trace points... [0.449s] Sorting trace points... [1.283s] Computing alignments... [33.336s] Deallocating buffers... [0.015s] Loading trace points... [0.15s] Sorting trace points... [1.282s] Computing alignments... [33.346s] Deallocating buffers... [0.017s] Loading trace points... [0.074s] Sorting trace points... [1.285s] Computing alignments... [33.694s] Deallocating buffers... [0.015s] Loading trace points... [0.062s] Sorting trace points... [1.21s] Computing alignments... [33.024s] Deallocating buffers... [0.014s] Loading trace points... [0.064s] Sorting trace points... [1.259s] Computing alignments... [32.985s] Deallocating buffers... [0.015s] Loading trace points... [0.097s] Sorting trace points... [1.29s] Computing alignments... [32.833s] Deallocating buffers... [0.014s] Loading trace points... [0.063s] Sorting trace points... [1.451s] Computing alignments... [33.101s] Deallocating buffers... [0.238s] Loading trace points... [0.161s] Sorting trace points... [1.272s] Computing alignments... [32.825s] Deallocating buffers... [0.014s] Loading trace points... [0.102s] Sorting trace points... [1.269s] Computing alignments... [32.82s] Deallocating buffers... [0.017s] Loading trace points... [0.042s] Sorting trace points... [1.229s] Computing alignments... [33.044s] Deallocating buffers... [0.014s] Loading trace points... [0.122s] Sorting trace points... [0.931s] Computing alignments... [33.056s] Deallocating buffers... [0.015s] Loading trace points... [0.075s] Sorting trace points... [0.926s] Computing alignments... [33.105s] Deallocating buffers... [0.016s] Loading trace points... [0s] Sorting trace points... [1.116s] Computing alignments... [32.913s] Deallocating buffers... [0.015s] Loading trace points... [0s] [554.539s] Deallocating reference... [0.164s] Loading reference sequences... [30.867s] Masking reference... [31.036s] Initializing dictionary... [0.077s] Initializing temporary storage... [0.006s] Building reference histograms... [32.707s] Allocating buffers... [0s] Processing query block 1, reference block 10/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.466s] Building query seed array... [2.155s] Computing hash join... [6.589s] Masking low complexity seeds... [0.23s] Searching alignments... [80.56s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 1/2, index chunk 2/4. Building reference seed array... [13.743s] Building query seed array... [3.109s] Computing hash join... [6.317s] Masking low complexity seeds... [0.222s] Searching alignments... [52.118s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 1/2, index chunk 3/4. Building reference seed array... [15.021s] Building query seed array... [2.944s] Computing hash join... [6.521s] Masking low complexity seeds... [0.218s] Searching alignments... [46.567s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.837s] Building query seed array... [2.381s] Computing hash join... [6.086s] Masking low complexity seeds... [0.233s] Searching alignments... [40.957s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 2/2, index chunk 1/4. Building reference seed array... [11.389s] Building query seed array... [2.118s] Computing hash join... [5.865s] Masking low complexity seeds... [0.253s] Searching alignments... [40.496s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 2/2, index chunk 2/4. Building reference seed array... [13.108s] Building query seed array... [2.502s] Computing hash join... [6.005s] Masking low complexity seeds... [0.243s] Searching alignments... [32.751s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.633s] Building query seed array... [2.434s] Computing hash join... [5.964s] Masking low complexity seeds... [0.256s] Searching alignments... [35.533s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.491s] Building query seed array... [2.131s] Computing hash join... [6.03s] Masking low complexity seeds... [0.216s] Searching alignments... [30.451s] Deallocating memory... [0s] Deallocating buffers... [2.479s] Clearing query masking... [1.589s] Opening temporary output file... [0.014s] Computing alignments... Loading trace points... [6.489s] Sorting trace points... [1.065s] Computing alignments... [32.079s] Deallocating buffers... [0.015s] Loading trace points... [0.193s] Sorting trace points... [1.281s] Computing alignments... [32.241s] Deallocating buffers... [0.017s] Loading trace points... [0.059s] Sorting trace points... [1.23s] Computing alignments... [31.8s] Deallocating buffers... [0.017s] Loading trace points... [0.057s] Sorting trace points... [1.192s] Computing alignments... [33.297s] Deallocating buffers... [0.015s] Loading trace points... [0.082s] Sorting trace points... [0.893s] Computing alignments... [33.398s] Deallocating buffers... [0.016s] Loading trace points... [0.07s] Sorting trace points... [1.271s] Computing alignments... [33.728s] Deallocating buffers... [0.015s] Loading trace points... [0.069s] Sorting trace points... [1.393s] Computing alignments... [33.07s] Deallocating buffers... [0.19s] Loading trace points... [0.072s] Sorting trace points... [1.005s] Computing alignments... [32.713s] Deallocating buffers... [0.016s] Loading trace points... [0.049s] Sorting trace points... [1.175s] Computing alignments... [32.727s] Deallocating buffers... [0.015s] Loading trace points... [0.149s] Sorting trace points... [1.44s] Computing alignments... [32.532s] Deallocating buffers... [0.198s] Loading trace points... [0.067s] Sorting trace points... [1.227s] Computing alignments... [32.57s] Deallocating buffers... [0.017s] Loading trace points... [0.067s] Sorting trace points... [1.268s] Computing alignments... [32.632s] Deallocating buffers... [0.014s] Loading trace points... [0.038s] Sorting trace points... [1.236s] Computing alignments... [32.901s] Deallocating buffers... [0.018s] Loading trace points... [0.065s] Sorting trace points... [0.96s] Computing alignments... [32.973s] Deallocating buffers... [0.015s] Loading trace points... [0.058s] Sorting trace points... [1.413s] Computing alignments... [33.041s] Deallocating buffers... [0.014s] Loading trace points... [0s] Sorting trace points... [1.214s] Computing alignments... [32.7s] Deallocating buffers... [0.017s] Loading trace points... [0s] [552s] Deallocating reference... [0.056s] Loading reference sequences... [29.625s] Masking reference... [30.91s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.006s] Building reference histograms... [33.135s] Allocating buffers... [0s] Processing query block 1, reference block 11/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.807s] Building query seed array... [2.116s] Computing hash join... [6.967s] Masking low complexity seeds... [0.234s] Searching alignments... [75.749s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.558s] Building query seed array... [2.942s] Computing hash join... [7.295s] Masking low complexity seeds... [0.228s] Searching alignments... [53.261s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.986s] Building query seed array... [2.756s] Computing hash join... [7.099s] Masking low complexity seeds... [0.239s] Searching alignments... [42.877s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 1/2, index chunk 4/4. Building reference seed array... [11.21s] Building query seed array... [2.461s] Computing hash join... [7.099s] Masking low complexity seeds... [0.222s] Searching alignments... [38.762s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.917s] Building query seed array... [2.053s] Computing hash join... [6.871s] Masking low complexity seeds... [0.271s] Searching alignments... [39.744s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.977s] Building query seed array... [2.334s] Computing hash join... [6.463s] Masking low complexity seeds... [0.208s] Searching alignments... [32.735s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.768s] Building query seed array... [2.501s] Computing hash join... [6.83s] Masking low complexity seeds... [0.212s] Searching alignments... [35.176s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.485s] Building query seed array... [2.197s] Computing hash join... [6.892s] Masking low complexity seeds... [0.295s] Searching alignments... [30.463s] Deallocating memory... [0s] Deallocating buffers... [2.211s] Clearing query masking... [1.713s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [6.54s] Sorting trace points... [1.294s] Computing alignments... [32.19s] Deallocating buffers... [0.016s] Loading trace points... [0.047s] Sorting trace points... [1.325s] Computing alignments... [32.451s] Deallocating buffers... [0.173s] Loading trace points... [0.053s] Sorting trace points... [1.235s] Computing alignments... [31.82s] Deallocating buffers... [0.014s] Loading trace points... [0.055s] Sorting trace points... [1.199s] Computing alignments... [33.37s] Deallocating buffers... [0.017s] Loading trace points... [0.101s] Sorting trace points... [1.243s] Computing alignments... [33.76s] Deallocating buffers... [0.018s] Loading trace points... [0.087s] Sorting trace points... [0.997s] Computing alignments... [33.727s] Deallocating buffers... [0.017s] Loading trace points... [0.386s] Sorting trace points... [1.3s] Computing alignments... [33.186s] Deallocating buffers... [0.017s] Loading trace points... [0.091s] Sorting trace points... [1.257s] Computing alignments... [33.245s] Deallocating buffers... [0.015s] Loading trace points... [0.045s] Sorting trace points... [1.354s] Computing alignments... [32.9s] Deallocating buffers... [0.273s] Loading trace points... [0.052s] Sorting trace points... [0.978s] Computing alignments... [32.476s] Deallocating buffers... [0.015s] Loading trace points... [0.081s] Sorting trace points... [1.256s] Computing alignments... [32.737s] Deallocating buffers... [0.039s] Loading trace points... [0.099s] Sorting trace points... [1.472s] Computing alignments... [32.837s] Deallocating buffers... [0.266s] Loading trace points... [0.086s] Sorting trace points... [1.062s] Computing alignments... [32.841s] Deallocating buffers... [0.016s] Loading trace points... [0.56s] Sorting trace points... [1.302s] Computing alignments... [32.981s] Deallocating buffers... [0.017s] Loading trace points... [0s] Sorting trace points... [1.224s] Computing alignments... [32.973s] Deallocating buffers... [0.017s] Loading trace points... [0s] Sorting trace points... [1.177s] Computing alignments... [32.919s] Deallocating buffers... [0.139s] Loading trace points... [0s] [555.64s] Deallocating reference... [0.063s] Loading reference sequences... [31.673s] Masking reference... [31.943s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.006s] Building reference histograms... [31.95s] Allocating buffers... [0s] Processing query block 1, reference block 12/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.516s] Building query seed array... [2.167s] Computing hash join... [7.31s] Masking low complexity seeds... [0.234s] Searching alignments... [80.004s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.537s] Building query seed array... [2.942s] Computing hash join... [6.983s] Masking low complexity seeds... [0.222s] Searching alignments... [52.307s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.618s] Building query seed array... [2.873s] Computing hash join... [7.062s] Masking low complexity seeds... [0.25s] Searching alignments... [46.354s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.87s] Building query seed array... [2.425s] Computing hash join... [7.132s] Masking low complexity seeds... [0.302s] Searching alignments... [40.933s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.651s] Building query seed array... [2.134s] Computing hash join... [6.26s] Masking low complexity seeds... [0.207s] Searching alignments... [40.047s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 2/2, index chunk 2/4. Building reference seed array... [13.153s] Building query seed array... [2.452s] Computing hash join... [6.532s] Masking low complexity seeds... [0.239s] Searching alignments... [32.472s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.633s] Building query seed array... [2.582s] Computing hash join... [6.437s] Masking low complexity seeds... [0.24s] Searching alignments... [36.012s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 2/2, index chunk 4/4. Building reference seed array... [11.118s] Building query seed array... [2.239s] Computing hash join... [6.435s] Masking low complexity seeds... [0.231s] Searching alignments... [30.947s] Deallocating memory... [0s] Deallocating buffers... [2.206s] Clearing query masking... [1.779s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [6.604s] Sorting trace points... [1.283s] Computing alignments... [31.994s] Deallocating buffers... [0.017s] Loading trace points... [0.084s] Sorting trace points... [1.225s] Computing alignments... [32.12s] Deallocating buffers... [0.017s] Loading trace points... [0.051s] Sorting trace points... [1.187s] Computing alignments... [31.658s] Deallocating buffers... [0.018s] Loading trace points... [0.074s] Sorting trace points... [1.253s] Computing alignments... [33.039s] Deallocating buffers... [0.014s] Loading trace points... [0.001s] Sorting trace points... [1.242s] Computing alignments... [33.157s] Deallocating buffers... [0.017s] Loading trace points... [0.033s] Sorting trace points... [1.295s] Computing alignments... [33.353s] Deallocating buffers... [0.018s] Loading trace points... [0.068s] Sorting trace points... [1.228s] Computing alignments... [32.648s] Deallocating buffers... [0.015s] Loading trace points... [0.093s] Sorting trace points... [1.223s] Computing alignments... [32.427s] Deallocating buffers... [0.014s] Loading trace points... [0.069s] Sorting trace points... [1.092s] Computing alignments... [32.445s] Deallocating buffers... [0.017s] Loading trace points... [0.156s] Sorting trace points... [1.017s] Computing alignments... [32.479s] Deallocating buffers... [0.015s] Loading trace points... [1.007s] Sorting trace points... [1.298s] Computing alignments... [32.689s] Deallocating buffers... [0.016s] Loading trace points... [0.084s] Sorting trace points... [1.431s] Computing alignments... [32.656s] Deallocating buffers... [0.214s] Loading trace points... [0.039s] Sorting trace points... [1.29s] Computing alignments... [32.868s] Deallocating buffers... [0.017s] Loading trace points... [0.141s] Sorting trace points... [1.079s] Computing alignments... [32.946s] Deallocating buffers... [0.016s] Loading trace points... [0.058s] Sorting trace points... [1.292s] Computing alignments... [33.051s] Deallocating buffers... [0.015s] Loading trace points... [0s] Sorting trace points... [1.267s] Computing alignments... [32.852s] Deallocating buffers... [0.014s] Loading trace points... [0s] [551.367s] Deallocating reference... [0.057s] Loading reference sequences... [29.37s] Masking reference... [30.893s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.006s] Building reference histograms... [32.699s] Allocating buffers... [0s] Processing query block 1, reference block 13/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.273s] Building query seed array... [2.089s] Computing hash join... [7.269s] Masking low complexity seeds... [0.227s] Searching alignments... [80.666s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.692s] Building query seed array... [3.125s] Computing hash join... [7.22s] Masking low complexity seeds... [0.225s] Searching alignments... [51.538s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 1/2, index chunk 3/4. Building reference seed array... [14.292s] Building query seed array... [2.795s] Computing hash join... [7.125s] Masking low complexity seeds... [0.231s] Searching alignments... [43.976s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.348s] Building query seed array... [2.411s] Computing hash join... [7.02s] Masking low complexity seeds... [0.249s] Searching alignments... [39.943s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.458s] Building query seed array... [2.063s] Computing hash join... [6.994s] Masking low complexity seeds... [0.282s] Searching alignments... [40.74s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 2/2, index chunk 2/4. Building reference seed array... [13.067s] Building query seed array... [2.486s] Computing hash join... [6.455s] Masking low complexity seeds... [0.229s] Searching alignments... [32.902s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.977s] Building query seed array... [2.664s] Computing hash join... [6.63s] Masking low complexity seeds... [0.211s] Searching alignments... [35.805s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.366s] Building query seed array... [2.163s] Computing hash join... [6.816s] Masking low complexity seeds... [0.279s] Searching alignments... [31.108s] Deallocating memory... [0s] Deallocating buffers... [2.289s] Clearing query masking... [1.609s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [6.62s] Sorting trace points... [1.605s] Computing alignments... [32.143s] Deallocating buffers... [0.016s] Loading trace points... [0.067s] Sorting trace points... [1.333s] Computing alignments... [32.538s] Deallocating buffers... [0.176s] Loading trace points... [0.068s] Sorting trace points... [1.2s] Computing alignments... [31.77s] Deallocating buffers... [0.017s] Loading trace points... [0.069s] Sorting trace points... [1.279s] Computing alignments... [33.329s] Deallocating buffers... [0.017s] Loading trace points... [0.076s] Sorting trace points... [1.261s] Computing alignments... [33.274s] Deallocating buffers... [0.018s] Loading trace points... [0.093s] Sorting trace points... [1.275s] Computing alignments... [33.639s] Deallocating buffers... [0.014s] Loading trace points... [0.059s] Sorting trace points... [1.292s] Computing alignments... [32.753s] Deallocating buffers... [0.018s] Loading trace points... [1.085s] Sorting trace points... [1.329s] Computing alignments... [33.017s] Deallocating buffers... [0.017s] Loading trace points... [0.084s] Sorting trace points... [1.259s] Computing alignments... [32.9s] Deallocating buffers... [0.015s] Loading trace points... [0.049s] Sorting trace points... [1.002s] Computing alignments... [32.645s] Deallocating buffers... [0.016s] Loading trace points... [0.063s] Sorting trace points... [1.132s] Computing alignments... [32.71s] Deallocating buffers... [0.017s] Loading trace points... [0.088s] Sorting trace points... [1.239s] Computing alignments... [32.776s] Deallocating buffers... [0.014s] Loading trace points... [0.033s] Sorting trace points... [1.273s] Computing alignments... [33.023s] Deallocating buffers... [0.018s] Loading trace points... [0.104s] Sorting trace points... [1.06s] Computing alignments... [33.092s] Deallocating buffers... [0.016s] Loading trace points... [0.404s] Sorting trace points... [1.323s] Computing alignments... [33.142s] Deallocating buffers... [0.017s] Loading trace points... [0s] Sorting trace points... [1.246s] Computing alignments... [32.991s] Deallocating buffers... [0.014s] Loading trace points... [0s] [555.476s] Deallocating reference... [0.059s] Loading reference sequences... [25.515s] Masking reference... [25.835s] Initializing dictionary... [0.063s] Initializing temporary storage... [0.006s] Building reference histograms... [26.058s] Allocating buffers... [0.001s] Processing query block 1, reference block 14/14, shape 1/2, index chunk 1/4. Building reference seed array... [8.483s] Building query seed array... [2.163s] Computing hash join... [5.119s] Masking low complexity seeds... [0.205s] Searching alignments... [63.811s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 1/2, index chunk 2/4. Building reference seed array... [10.308s] Building query seed array... [3.01s] Computing hash join... [4.975s] Masking low complexity seeds... [0.219s] Searching alignments... [43.01s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 1/2, index chunk 3/4. Building reference seed array... [12.076s] Building query seed array... [2.916s] Computing hash join... [4.979s] Masking low complexity seeds... [0.234s] Searching alignments... [35.938s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 1/2, index chunk 4/4. Building reference seed array... [9.126s] Building query seed array... [2.334s] Computing hash join... [4.764s] Masking low complexity seeds... [0.222s] Searching alignments... [32.558s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 2/2, index chunk 1/4. Building reference seed array... [8.772s] Building query seed array... [2.061s] Computing hash join... [4.608s] Masking low complexity seeds... [0.231s] Searching alignments... [33.72s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 2/2, index chunk 2/4. Building reference seed array... [10.313s] Building query seed array... [2.515s] Computing hash join... [4.643s] Masking low complexity seeds... [0.211s] Searching alignments... [26.568s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 2/2, index chunk 3/4. Building reference seed array... [11.05s] Building query seed array... [2.538s] Computing hash join... [4.59s] Masking low complexity seeds... [0.201s] Searching alignments... [28.928s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 2/2, index chunk 4/4. Building reference seed array... [8.795s] Building query seed array... [2.117s] Computing hash join... [4.698s] Masking low complexity seeds... [0.283s] Searching alignments... [24.657s] Deallocating memory... [0s] Deallocating buffers... [1.552s] Clearing query masking... [1.576s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [11.728s] Sorting trace points... [1.7s] Computing alignments... [50.974s] Deallocating buffers... [0.024s] Loading trace points... [0.141s] Sorting trace points... [1.943s] Computing alignments... [51.684s] Deallocating buffers... [0.103s] Loading trace points... [0.1s] Sorting trace points... [1.77s] Computing alignments... [53.166s] Deallocating buffers... [0.072s] Loading trace points... [0.121s] Sorting trace points... [2.27s] Computing alignments... [52.212s] Deallocating buffers... [0.093s] Loading trace points... [0.155s] Sorting trace points... [2.294s] Computing alignments... [52.239s] Deallocating buffers... [0.272s] Loading trace points... [0.122s] Sorting trace points... [1.595s] Computing alignments... [52.171s] Deallocating buffers... [0.025s] Loading trace points... [0.147s] Sorting trace points... [1.855s] Computing alignments... [52.512s] Deallocating buffers... [0.024s] Loading trace points... [0s] Sorting trace points... [1.798s] Computing alignments... [52.161s] Deallocating buffers... [0.023s] Loading trace points... [0s] [445.767s] Deallocating reference... [0.046s] Loading reference sequences... [0.073s] Deallocating buffers... [0s] Joining output blocks... Joining output blocks... [2245.74s] [2245.75s] Deallocating queries... [0.082s] Loading query sequences... [0s] Closing the input file... [0s] Closing the output file... Loading dictionary... [3.854s] [4.977s] Closing the database... [0s] Cleaning up... [0s] Total time = 18898.6s Reported 2374957113 pairwise alignments, 2374957113 HSPs. 13524239 queries aligned. DIAMOND BLASTx on /gscratch/srlab/sam/data/P_verrucosa/RNAseq/C17_R1.fastp-trim.20230215.fq.gz complete: C17_R1.blastx.meganized.daa Now MEGANizing C17_R1.blastx.meganized.daa Version MEGAN Community Edition (version 6.22.0, built 19 Feb 2022) Author(s) Daniel H. Huson Copyright (C) 2022 Daniel H. Huson. This program comes with ABSOLUTELY NO WARRANTY. Java version: 17.0.2 Functional classifications to use: EC, EGGNOG, GTDB, INTERPRO2GO, SEED Loading ncbi.map: 2,396,736 Loading ncbi.tre: 2,396,740 Loading ec.map: 8,200 Loading ec.tre: 8,204 Loading eggnog.map: 30,875 Loading eggnog.tre: 30,986 Loading gtdb.map: 240,103 Loading gtdb.tre: 240,107 Loading interpro2go.map: 14,242 Loading interpro2go.tre: 28,907 Loading seed.map: 961 Loading seed.tre: 962 Meganizing: C17_R1.blastx.meganized.daa Meganizing init Annotating DAA file using FAST mode (accession database and first accession per line) Annotating references 10% 20% 30% 40% 50% 60% 70% 100% (545.4s) Writing 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (1.3s) Binning reads Initializing... Initializing binning... Using 'Naive LCA' algorithm for binning: Taxonomy Using Best-Hit algorithm for binning: SEED Using Best-Hit algorithm for binning: EGGNOG Using 'Naive LCA' algorithm for binning: GTDB Using Best-Hit algorithm for binning: EC Using Best-Hit algorithm for binning: INTERPRO2GO Binning reads... Binning reads Analyzing alignments 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (4,742.3s) Total reads: 13,524,239 With hits: 13,524,239 Alignments: 2,361,870,949 Assig. Taxonomy: 12,661,788 Assig. SEED: 108,671 Assig. EGGNOG: 52,748 Assig. GTDB: 386,410 Assig. EC: 2,107,917 Assig. INTERPRO2GO: 1,198,654 MinSupport set to: 6762 Binning reads Applying min-support & disabled filter to Taxonomy... 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (0.5s) Min-supp. changes: 3,966 Binning reads Applying min-support & disabled filter to GTDB... 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (12.4s) Min-supp. changes: 2,974 Binning reads Writing classification tables 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (32.8s) Binning reads Syncing 100% (0.5s) Class. Taxonomy: 74 Class. SEED: 510 Class. EGGNOG: 1,779 Class. GTDB: 20 Class. EC: 2,406 Class. INTERPRO2GO: 8,254 Total time: 5,344s Peak memory: 37.7 of 195.3G MEGANization of C17_R1.blastx.meganized.daa completed. Generating MD5 checksum for /gscratch/srlab/sam/data/P_verrucosa/RNAseq/C17_R2.fastp-trim.20230215.fq.gz... b7a27d4f032919be4b2afd9b9915c3e3 /gscratch/srlab/sam/data/P_verrucosa/RNAseq/C17_R2.fastp-trim.20230215.fq.gz Running DIAMOND BLASTx on /gscratch/srlab/sam/data/P_verrucosa/RNAseq/C17_R2.fastp-trim.20230215.fq.gz. diamond v2.1.1.155 (C) Max Planck Society for the Advancement of Science Documentation, support and updates available at http://www.diamondsearch.org Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021) #CPU threads: 40 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: Percentage range of top alignment score to report hits: 5 Opening the database... [0.36s] Database: /gscratch/srlab/blastdbs/20230215-ncbi-nr/20230215-ncbi-nr.dmnd (type: Diamond database, sequences: 526308523, letters: 207134680681) Block size = 15000000000 Opening the input file... [0.995s] Opening the output file... [0s] Loading query sequences... [77.307s] Masking queries... [19.203s] Algorithm: Double-indexed Building query histograms... [20.111s] Loading reference sequences... [32.038s] Masking reference... [30.961s] Initializing dictionary... [0.079s] Initializing temporary storage... [0.008s] Building reference histograms... [31.879s] Allocating buffers... [0s] Processing query block 1, reference block 1/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.095s] Building query seed array... [2.16s] Computing hash join... [6.472s] Masking low complexity seeds... [0.272s] Searching alignments... [78.516s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.533s] Building query seed array... [3.128s] Computing hash join... [6.702s] Masking low complexity seeds... [0.279s] Searching alignments... [53.123s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.934s] Building query seed array... [2.927s] Computing hash join... [6.62s] Masking low complexity seeds... [0.262s] Searching alignments... [46.64s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.555s] Building query seed array... [2.444s] Computing hash join... [6.537s] Masking low complexity seeds... [0.259s] Searching alignments... [42.116s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.644s] Building query seed array... [2.156s] Computing hash join... [6.333s] Masking low complexity seeds... [0.257s] Searching alignments... [43.667s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.705s] Building query seed array... [2.325s] Computing hash join... [6.713s] Masking low complexity seeds... [0.263s] Searching alignments... [33.091s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.671s] Building query seed array... [2.47s] Computing hash join... [6.628s] Masking low complexity seeds... [0.247s] Searching alignments... [37.809s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.419s] Building query seed array... [2.229s] Computing hash join... [6.541s] Masking low complexity seeds... [0.259s] Searching alignments... [31.961s] Deallocating memory... [0s] Deallocating buffers... [1.335s] Clearing query masking... [1.706s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [6.85s] Sorting trace points... [1.331s] Computing alignments... [33.675s] Deallocating buffers... [0.015s] Loading trace points... [0.054s] Sorting trace points... [0.951s] Computing alignments... [33.166s] Deallocating buffers... [0.015s] Loading trace points... [0.07s] Sorting trace points... [1.252s] Computing alignments... [33.364s] Deallocating buffers... [0.014s] Loading trace points... [0.083s] Sorting trace points... [1.424s] Computing alignments... [32.833s] Deallocating buffers... [0.219s] Loading trace points... [0.089s] Sorting trace points... [1.272s] Computing alignments... [32.942s] Deallocating buffers... [0.015s] Loading trace points... [0.07s] Sorting trace points... [1.12s] Computing alignments... [31.968s] Deallocating buffers... [0.015s] Loading trace points... [0.075s] Sorting trace points... [1.243s] Computing alignments... [31.83s] Deallocating buffers... [0.017s] Loading trace points... [0.06s] Sorting trace points... [0.903s] Computing alignments... [31.365s] Deallocating buffers... [0.015s] Loading trace points... [1.28s] Sorting trace points... [1.26s] Computing alignments... [32.647s] Deallocating buffers... [0.014s] Loading trace points... [0.056s] Sorting trace points... [1.274s] Computing alignments... [33.494s] Deallocating buffers... [0.018s] Loading trace points... [0.119s] Sorting trace points... [1.335s] Computing alignments... [33.926s] Deallocating buffers... [0.06s] Loading trace points... [0.107s] Sorting trace points... [1.484s] Computing alignments... [34.038s] Deallocating buffers... [0.303s] Loading trace points... [0.059s] Sorting trace points... [1.373s] Computing alignments... [33.975s] Deallocating buffers... [0.015s] Loading trace points... [0.069s] Sorting trace points... [1.267s] Computing alignments... [34.13s] Deallocating buffers... [0.015s] Loading trace points... [0.115s] Sorting trace points... [1.317s] Computing alignments... [34.049s] Deallocating buffers... [0.014s] Loading trace points... [0s] Sorting trace points... [1.07s] Computing alignments... [34.607s] Deallocating buffers... [0.028s] Loading trace points... [0s] [561.943s] Deallocating reference... [0.082s] Loading reference sequences... [29.551s] Masking reference... [32.034s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.008s] Building reference histograms... [32.149s] Allocating buffers... [0.001s] Processing query block 1, reference block 2/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.631s] Building query seed array... [2.23s] Computing hash join... [6.753s] Masking low complexity seeds... [0.592s] Searching alignments... [79.246s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.836s] Building query seed array... [3.152s] Computing hash join... [6.997s] Masking low complexity seeds... [0.317s] Searching alignments... [54.881s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.691s] Building query seed array... [2.819s] Computing hash join... [6.735s] Masking low complexity seeds... [0.336s] Searching alignments... [45.494s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.722s] Building query seed array... [2.377s] Computing hash join... [6.435s] Masking low complexity seeds... [0.266s] Searching alignments... [41.019s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.327s] Building query seed array... [2.163s] Computing hash join... [6.282s] Masking low complexity seeds... [0.238s] Searching alignments... [42.31s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.765s] Building query seed array... [2.387s] Computing hash join... [6.518s] Masking low complexity seeds... [0.255s] Searching alignments... [33.05s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.206s] Building query seed array... [2.634s] Computing hash join... [6.411s] Masking low complexity seeds... [0.259s] Searching alignments... [36.032s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.216s] Building query seed array... [2.139s] Computing hash join... [6.239s] Masking low complexity seeds... [0.249s] Searching alignments... [30.474s] Deallocating memory... [0s] Deallocating buffers... [1.325s] Clearing query masking... [1.654s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [6.68s] Sorting trace points... [1.336s] Computing alignments... [33.258s] Deallocating buffers... [0.016s] Loading trace points... [0.109s] Sorting trace points... [1.227s] Computing alignments... [33.031s] Deallocating buffers... [0.017s] Loading trace points... [0.049s] Sorting trace points... [1.299s] Computing alignments... [33.125s] Deallocating buffers... [0.014s] Loading trace points... [0.578s] Sorting trace points... [1s] Computing alignments... [32.491s] Deallocating buffers... [0.015s] Loading trace points... [0.076s] Sorting trace points... [1.307s] Computing alignments... [32.573s] Deallocating buffers... [0.093s] Loading trace points... [0.056s] Sorting trace points... [1.487s] Computing alignments... [32.095s] Deallocating buffers... [0.219s] Loading trace points... [0.08s] Sorting trace points... [1.282s] Computing alignments... [31.527s] Deallocating buffers... [0.055s] Loading trace points... [0.073s] Sorting trace points... [1.351s] Computing alignments... [31.21s] Deallocating buffers... [0.201s] Loading trace points... [0.065s] Sorting trace points... [1.109s] Computing alignments... [32.496s] Deallocating buffers... [0.017s] Loading trace points... [0.034s] Sorting trace points... [1.278s] Computing alignments... [33.387s] Deallocating buffers... [0.015s] Loading trace points... [0.096s] Sorting trace points... [1.352s] Computing alignments... [33.552s] Deallocating buffers... [0.015s] Loading trace points... [0.001s] Sorting trace points... [1.495s] Computing alignments... [33.585s] Deallocating buffers... [0.306s] Loading trace points... [0.048s] Sorting trace points... [1.045s] Computing alignments... [33.676s] Deallocating buffers... [0.016s] Loading trace points... [0.067s] Sorting trace points... [1.285s] Computing alignments... [33.953s] Deallocating buffers... [0.015s] Loading trace points... [0.054s] Sorting trace points... [1.053s] Computing alignments... [33.707s] Deallocating buffers... [0.017s] Loading trace points... [0s] Sorting trace points... [1.055s] Computing alignments... [34.392s] Deallocating buffers... [0.026s] Loading trace points... [0s] [557.497s] Deallocating reference... [0.066s] Loading reference sequences... [37.204s] Masking reference... [31.082s] Initializing dictionary... [0.077s] Initializing temporary storage... [0.007s] Building reference histograms... [32.367s] Allocating buffers... [0.001s] Processing query block 1, reference block 3/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.14s] Building query seed array... [2.182s] Computing hash join... [6.556s] Masking low complexity seeds... [0.491s] Searching alignments... [78.735s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.561s] Building query seed array... [2.958s] Computing hash join... [6.513s] Masking low complexity seeds... [0.267s] Searching alignments... [53.534s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.71s] Building query seed array... [2.941s] Computing hash join... [6.365s] Masking low complexity seeds... [0.262s] Searching alignments... [45.787s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 1/2, index chunk 4/4. Building reference seed array... [9.961s] Building query seed array... [2.421s] Computing hash join... [6.688s] Masking low complexity seeds... [0.348s] Searching alignments... [40.946s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.079s] Building query seed array... [2.225s] Computing hash join... [6.212s] Masking low complexity seeds... [0.245s] Searching alignments... [42.847s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.101s] Building query seed array... [2.433s] Computing hash join... [6.141s] Masking low complexity seeds... [0.252s] Searching alignments... [33.41s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.536s] Building query seed array... [2.55s] Computing hash join... [6.328s] Masking low complexity seeds... [0.252s] Searching alignments... [37.591s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.055s] Building query seed array... [2.115s] Computing hash join... [6.303s] Masking low complexity seeds... [0.248s] Searching alignments... [30.329s] Deallocating memory... [0s] Deallocating buffers... [1.144s] Clearing query masking... [1.648s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [6.693s] Sorting trace points... [1.405s] Computing alignments... [33.151s] Deallocating buffers... [0.015s] Loading trace points... [0.045s] Sorting trace points... [1.183s] Computing alignments... [32.979s] Deallocating buffers... [0.017s] Loading trace points... [0.043s] Sorting trace points... [1.296s] Computing alignments... [32.977s] Deallocating buffers... [0.014s] Loading trace points... [0.061s] Sorting trace points... [1.206s] Computing alignments... [32.492s] Deallocating buffers... [0.015s] Loading trace points... [0.105s] Sorting trace points... [1.263s] Computing alignments... [33.478s] Deallocating buffers... [0.015s] Loading trace points... [1.072s] Sorting trace points... [1.172s] Computing alignments... [32.678s] Deallocating buffers... [0.016s] Loading trace points... [0.105s] Sorting trace points... [1.209s] Computing alignments... [31.682s] Deallocating buffers... [0.014s] Loading trace points... [0.04s] Sorting trace points... [0.874s] Computing alignments... [31.556s] Deallocating buffers... [0.022s] Loading trace points... [0.067s] Sorting trace points... [1.393s] Computing alignments... [32.563s] Deallocating buffers... [0.093s] Loading trace points... [0.057s] Sorting trace points... [1.109s] Computing alignments... [33.336s] Deallocating buffers... [0.044s] Loading trace points... [0.137s] Sorting trace points... [1.122s] Computing alignments... [33.645s] Deallocating buffers... [0.016s] Loading trace points... [0.051s] Sorting trace points... [1.273s] Computing alignments... [33.449s] Deallocating buffers... [0.014s] Loading trace points... [0.068s] Sorting trace points... [1.313s] Computing alignments... [33.921s] Deallocating buffers... [0.018s] Loading trace points... [0.062s] Sorting trace points... [1.291s] Computing alignments... [33.846s] Deallocating buffers... [0.014s] Loading trace points... [0.067s] Sorting trace points... [1.278s] Computing alignments... [33.828s] Deallocating buffers... [0.015s] Loading trace points... [0s] Sorting trace points... [1.09s] Computing alignments... [34.466s] Deallocating buffers... [0.024s] Loading trace points... [0s] [558.772s] Deallocating reference... [0.363s] Loading reference sequences... [30.503s] Masking reference... [30.903s] Initializing dictionary... [0.077s] Initializing temporary storage... [0.007s] Building reference histograms... [32.659s] Allocating buffers... [0s] Processing query block 1, reference block 4/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.209s] Building query seed array... [2.158s] Computing hash join... [7.023s] Masking low complexity seeds... [0.612s] Searching alignments... [80.359s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.936s] Building query seed array... [3.116s] Computing hash join... [7.079s] Masking low complexity seeds... [0.318s] Searching alignments... [55.326s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.405s] Building query seed array... [2.951s] Computing hash join... [6.962s] Masking low complexity seeds... [0.348s] Searching alignments... [44.411s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.488s] Building query seed array... [2.389s] Computing hash join... [6.64s] Masking low complexity seeds... [0.261s] Searching alignments... [39.088s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.571s] Building query seed array... [2.162s] Computing hash join... [6.482s] Masking low complexity seeds... [0.244s] Searching alignments... [42.28s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.241s] Building query seed array... [2.375s] Computing hash join... [6.276s] Masking low complexity seeds... [0.266s] Searching alignments... [32.684s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.292s] Building query seed array... [2.687s] Computing hash join... [6.421s] Masking low complexity seeds... [0.266s] Searching alignments... [36.238s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.404s] Building query seed array... [2.178s] Computing hash join... [6.374s] Masking low complexity seeds... [0.25s] Searching alignments... [30.773s] Deallocating memory... [0s] Deallocating buffers... [1.547s] Clearing query masking... [1.653s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [6.757s] Sorting trace points... [1.373s] Computing alignments... [33.967s] Deallocating buffers... [0.016s] Loading trace points... [0.046s] Sorting trace points... [0.911s] Computing alignments... [32.965s] Deallocating buffers... [0.016s] Loading trace points... [0.056s] Sorting trace points... [1.248s] Computing alignments... [33.065s] Deallocating buffers... [0.018s] Loading trace points... [0.051s] Sorting trace points... [1.127s] Computing alignments... [32.375s] Deallocating buffers... [0.017s] Loading trace points... [0.09s] Sorting trace points... [0.924s] Computing alignments... [32.686s] Deallocating buffers... [0.022s] Loading trace points... [0.086s] Sorting trace points... [1.256s] Computing alignments... [31.811s] Deallocating buffers... [0.016s] Loading trace points... [0.093s] Sorting trace points... [1.054s] Computing alignments... [31.511s] Deallocating buffers... [0.014s] Loading trace points... [0.13s] Sorting trace points... [1.188s] Computing alignments... [31.355s] Deallocating buffers... [0.014s] Loading trace points... [0.055s] Sorting trace points... [1.22s] Computing alignments... [32.637s] Deallocating buffers... [0.014s] Loading trace points... [0.05s] Sorting trace points... [1.172s] Computing alignments... [33.519s] Deallocating buffers... [0.015s] Loading trace points... [0.083s] Sorting trace points... [0.948s] Computing alignments... [33.729s] Deallocating buffers... [0.016s] Loading trace points... [0.06s] Sorting trace points... [1.383s] Computing alignments... [33.46s] Deallocating buffers... [0.163s] Loading trace points... [0.05s] Sorting trace points... [1.289s] Computing alignments... [33.623s] Deallocating buffers... [0.014s] Loading trace points... [0.051s] Sorting trace points... [1.249s] Computing alignments... [33.754s] Deallocating buffers... [0.014s] Loading trace points... [0.112s] Sorting trace points... [1.379s] Computing alignments... [33.753s] Deallocating buffers... [0.112s] Loading trace points... [0s] Sorting trace points... [1.501s] Computing alignments... [34.185s] Deallocating buffers... [0.401s] Loading trace points... [0s] [556.457s] Deallocating reference... [0.069s] Loading reference sequences... [35.835s] Masking reference... [31.177s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.007s] Building reference histograms... [32.438s] Allocating buffers... [0s] Processing query block 1, reference block 5/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.512s] Building query seed array... [2.173s] Computing hash join... [6.641s] Masking low complexity seeds... [0.341s] Searching alignments... [78.981s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.513s] Building query seed array... [3.071s] Computing hash join... [6.549s] Masking low complexity seeds... [0.257s] Searching alignments... [55.573s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.369s] Building query seed array... [2.74s] Computing hash join... [6.552s] Masking low complexity seeds... [0.276s] Searching alignments... [43.688s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.39s] Building query seed array... [2.412s] Computing hash join... [6.584s] Masking low complexity seeds... [0.303s] Searching alignments... [39.875s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.123s] Building query seed array... [2.212s] Computing hash join... [6.404s] Masking low complexity seeds... [0.246s] Searching alignments... [43.083s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.36s] Building query seed array... [2.391s] Computing hash join... [6.871s] Masking low complexity seeds... [0.313s] Searching alignments... [32.303s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.154s] Building query seed array... [2.545s] Computing hash join... [6.762s] Masking low complexity seeds... [0.344s] Searching alignments... [35.716s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.058s] Building query seed array... [2.108s] Computing hash join... [6.764s] Masking low complexity seeds... [0.374s] Searching alignments... [30.957s] Deallocating memory... [0s] Deallocating buffers... [1.181s] Clearing query masking... [1.642s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [6.892s] Sorting trace points... [1.16s] Computing alignments... [33.401s] Deallocating buffers... [0.015s] Loading trace points... [0.072s] Sorting trace points... [1.015s] Computing alignments... [32.973s] Deallocating buffers... [0.016s] Loading trace points... [0.063s] Sorting trace points... [1.047s] Computing alignments... [33.648s] Deallocating buffers... [0.017s] Loading trace points... [0.088s] Sorting trace points... [1.216s] Computing alignments... [32.699s] Deallocating buffers... [0.014s] Loading trace points... [0.051s] Sorting trace points... [1.252s] Computing alignments... [32.607s] Deallocating buffers... [0.014s] Loading trace points... [0.094s] Sorting trace points... [1.22s] Computing alignments... [31.778s] Deallocating buffers... [0.013s] Loading trace points... [0.102s] Sorting trace points... [1.191s] Computing alignments... [31.728s] Deallocating buffers... [0.017s] Loading trace points... [0.041s] Sorting trace points... [1.349s] Computing alignments... [31.278s] Deallocating buffers... [0.173s] Loading trace points... [0.171s] Sorting trace points... [1.315s] Computing alignments... [32.834s] Deallocating buffers... [0.042s] Loading trace points... [0.064s] Sorting trace points... [1.238s] Computing alignments... [33.595s] Deallocating buffers... [0.015s] Loading trace points... [0.091s] Sorting trace points... [1.316s] Computing alignments... [33.738s] Deallocating buffers... [0.018s] Loading trace points... [0.056s] Sorting trace points... [1.304s] Computing alignments... [33.963s] Deallocating buffers... [0.183s] Loading trace points... [0.068s] Sorting trace points... [1.086s] Computing alignments... [33.92s] Deallocating buffers... [0.016s] Loading trace points... [0.06s] Sorting trace points... [1.113s] Computing alignments... [34.186s] Deallocating buffers... [0.017s] Loading trace points... [0.06s] Sorting trace points... [1.288s] Computing alignments... [34.009s] Deallocating buffers... [0.017s] Loading trace points... [0s] Sorting trace points... [1.292s] Computing alignments... [34.412s] Deallocating buffers... [0.027s] Loading trace points... [0s] [558.983s] Deallocating reference... [0.424s] Loading reference sequences... [34.578s] Masking reference... [31.619s] Initializing dictionary... [0.077s] Initializing temporary storage... [0.008s] Building reference histograms... [32.286s] Allocating buffers... [0s] Processing query block 1, reference block 6/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.851s] Building query seed array... [2.175s] Computing hash join... [6.445s] Masking low complexity seeds... [0.264s] Searching alignments... [78.055s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 1/2, index chunk 2/4. Building reference seed array... [13.392s] Building query seed array... [3.093s] Computing hash join... [6.196s] Masking low complexity seeds... [0.27s] Searching alignments... [53.966s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.605s] Building query seed array... [2.951s] Computing hash join... [6.138s] Masking low complexity seeds... [0.294s] Searching alignments... [44.009s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.563s] Building query seed array... [2.231s] Computing hash join... [6.309s] Masking low complexity seeds... [0.415s] Searching alignments... [40.583s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.278s] Building query seed array... [2.019s] Computing hash join... [5.7s] Masking low complexity seeds... [0.257s] Searching alignments... [40.754s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.611s] Building query seed array... [2.454s] Computing hash join... [5.648s] Masking low complexity seeds... [0.269s] Searching alignments... [33.181s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.698s] Building query seed array... [2.529s] Computing hash join... [5.811s] Masking low complexity seeds... [0.246s] Searching alignments... [34.955s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.539s] Building query seed array... [2.156s] Computing hash join... [5.791s] Masking low complexity seeds... [0.264s] Searching alignments... [30.063s] Deallocating memory... [0s] Deallocating buffers... [2.061s] Clearing query masking... [1.601s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [6.702s] Sorting trace points... [1.349s] Computing alignments... [32.997s] Deallocating buffers... [0.018s] Loading trace points... [0.059s] Sorting trace points... [0.972s] Computing alignments... [32.5s] Deallocating buffers... [0.015s] Loading trace points... [0.063s] Sorting trace points... [1.365s] Computing alignments... [32.776s] Deallocating buffers... [0.08s] Loading trace points... [0.086s] Sorting trace points... [1.489s] Computing alignments... [32.285s] Deallocating buffers... [0.187s] Loading trace points... [0.089s] Sorting trace points... [1.266s] Computing alignments... [32.519s] Deallocating buffers... [0.058s] Loading trace points... [0.058s] Sorting trace points... [0.949s] Computing alignments... [31.661s] Deallocating buffers... [0.017s] Loading trace points... [0.052s] Sorting trace points... [1.129s] Computing alignments... [31.415s] Deallocating buffers... [0.014s] Loading trace points... [0.037s] Sorting trace points... [1.217s] Computing alignments... [31.157s] Deallocating buffers... [0.013s] Loading trace points... [0.041s] Sorting trace points... [1.087s] Computing alignments... [32.428s] Deallocating buffers... [0.017s] Loading trace points... [0.068s] Sorting trace points... [1.381s] Computing alignments... [33.269s] Deallocating buffers... [0.157s] Loading trace points... [0.347s] Sorting trace points... [1.34s] Computing alignments... [33.386s] Deallocating buffers... [0.043s] Loading trace points... [0.082s] Sorting trace points... [1.327s] Computing alignments... [33.284s] Deallocating buffers... [0.161s] Loading trace points... [0s] Sorting trace points... [1.208s] Computing alignments... [33.496s] Deallocating buffers... [0.015s] Loading trace points... [0.001s] Sorting trace points... [1.136s] Computing alignments... [33.604s] Deallocating buffers... [0.057s] Loading trace points... [0.056s] Sorting trace points... [1.282s] Computing alignments... [33.67s] Deallocating buffers... [0.029s] Loading trace points... [0s] Sorting trace points... [1.019s] Computing alignments... [33.999s] Deallocating buffers... [0.029s] Loading trace points... [0s] [552.757s] Deallocating reference... [0.479s] Loading reference sequences... [29.666s] Masking reference... [30.893s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.006s] Building reference histograms... [32.876s] Allocating buffers... [0s] Processing query block 1, reference block 7/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.642s] Building query seed array... [2.197s] Computing hash join... [7.087s] Masking low complexity seeds... [0.382s] Searching alignments... [82.568s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 1/2, index chunk 2/4. Building reference seed array... [13.147s] Building query seed array... [3.083s] Computing hash join... [7.257s] Masking low complexity seeds... [0.325s] Searching alignments... [54.481s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.937s] Building query seed array... [2.971s] Computing hash join... [7.082s] Masking low complexity seeds... [0.384s] Searching alignments... [45.45s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.264s] Building query seed array... [2.322s] Computing hash join... [6.627s] Masking low complexity seeds... [0.259s] Searching alignments... [41.272s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.139s] Building query seed array... [2.091s] Computing hash join... [6.236s] Masking low complexity seeds... [0.244s] Searching alignments... [44.104s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.642s] Building query seed array... [2.606s] Computing hash join... [6.54s] Masking low complexity seeds... [0.264s] Searching alignments... [33.597s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.571s] Building query seed array... [2.655s] Computing hash join... [6.549s] Masking low complexity seeds... [0.263s] Searching alignments... [36.786s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.414s] Building query seed array... [2.104s] Computing hash join... [6.376s] Masking low complexity seeds... [0.259s] Searching alignments... [30.506s] Deallocating memory... [0s] Deallocating buffers... [1.773s] Clearing query masking... [1.665s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [6.89s] Sorting trace points... [1.38s] Computing alignments... [33.172s] Deallocating buffers... [0.015s] Loading trace points... [0.057s] Sorting trace points... [1.249s] Computing alignments... [32.713s] Deallocating buffers... [0.015s] Loading trace points... [0.054s] Sorting trace points... [1.272s] Computing alignments... [33.049s] Deallocating buffers... [0.014s] Loading trace points... [0.055s] Sorting trace points... [1.209s] Computing alignments... [32.531s] Deallocating buffers... [0.017s] Loading trace points... [0.082s] Sorting trace points... [1.412s] Computing alignments... [33.105s] Deallocating buffers... [0.234s] Loading trace points... [0.086s] Sorting trace points... [1.286s] Computing alignments... [32.064s] Deallocating buffers... [0.218s] Loading trace points... [0.091s] Sorting trace points... [1.01s] Computing alignments... [31.782s] Deallocating buffers... [0.016s] Loading trace points... [0.041s] Sorting trace points... [0.974s] Computing alignments... [31.556s] Deallocating buffers... [0.015s] Loading trace points... [0.056s] Sorting trace points... [0.985s] Computing alignments... [32.637s] Deallocating buffers... [0.016s] Loading trace points... [0.085s] Sorting trace points... [1.279s] Computing alignments... [33.447s] Deallocating buffers... [0.018s] Loading trace points... [0.077s] Sorting trace points... [0.943s] Computing alignments... [33.698s] Deallocating buffers... [0.016s] Loading trace points... [0.056s] Sorting trace points... [1.194s] Computing alignments... [33.428s] Deallocating buffers... [0.191s] Loading trace points... [0.066s] Sorting trace points... [1.347s] Computing alignments... [33.702s] Deallocating buffers... [0.018s] Loading trace points... [0.075s] Sorting trace points... [0.961s] Computing alignments... [33.897s] Deallocating buffers... [0.016s] Loading trace points... [0.059s] Sorting trace points... [1.312s] Computing alignments... [33.766s] Deallocating buffers... [0.018s] Loading trace points... [0s] Sorting trace points... [1.273s] Computing alignments... [34.129s] Deallocating buffers... [0.029s] Loading trace points... [0s] [556.672s] Deallocating reference... [0.072s] Loading reference sequences... [37.639s] Masking reference... [31.116s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.005s] Building reference histograms... [32.443s] Allocating buffers... [0.001s] Processing query block 1, reference block 8/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.252s] Building query seed array... [2.19s] Computing hash join... [6.445s] Masking low complexity seeds... [0.261s] Searching alignments... [78.939s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.957s] Building query seed array... [3.093s] Computing hash join... [6.706s] Masking low complexity seeds... [0.294s] Searching alignments... [52.619s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.767s] Building query seed array... [2.867s] Computing hash join... [6.662s] Masking low complexity seeds... [0.263s] Searching alignments... [45.095s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.119s] Building query seed array... [2.319s] Computing hash join... [6.957s] Masking low complexity seeds... [0.38s] Searching alignments... [39.807s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.172s] Building query seed array... [2.092s] Computing hash join... [6.294s] Masking low complexity seeds... [0.239s] Searching alignments... [41.13s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.638s] Building query seed array... [2.508s] Computing hash join... [6.383s] Masking low complexity seeds... [0.258s] Searching alignments... [32.682s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.653s] Building query seed array... [2.509s] Computing hash join... [6.35s] Masking low complexity seeds... [0.251s] Searching alignments... [36.225s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.13s] Building query seed array... [2.155s] Computing hash join... [6.377s] Masking low complexity seeds... [0.238s] Searching alignments... [30.106s] Deallocating memory... [0s] Deallocating buffers... [1.206s] Clearing query masking... [1.636s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [7.647s] Sorting trace points... [1.311s] Computing alignments... [33.175s] Deallocating buffers... [0.017s] Loading trace points... [0.1s] Sorting trace points... [1.276s] Computing alignments... [32.963s] Deallocating buffers... [0.018s] Loading trace points... [0.071s] Sorting trace points... [0.989s] Computing alignments... [33.177s] Deallocating buffers... [0.12s] Loading trace points... [0.067s] Sorting trace points... [1.102s] Computing alignments... [32.662s] Deallocating buffers... [0.017s] Loading trace points... [0.089s] Sorting trace points... [1.35s] Computing alignments... [33.248s] Deallocating buffers... [0.26s] Loading trace points... [0.068s] Sorting trace points... [1.14s] Computing alignments... [32.678s] Deallocating buffers... [0.017s] Loading trace points... [0.089s] Sorting trace points... [1.199s] Computing alignments... [31.878s] Deallocating buffers... [0.014s] Loading trace points... [0.085s] Sorting trace points... [1.229s] Computing alignments... [31.583s] Deallocating buffers... [0.014s] Loading trace points... [0.081s] Sorting trace points... [1.25s] Computing alignments... [32.869s] Deallocating buffers... [0.017s] Loading trace points... [0.062s] Sorting trace points... [1.136s] Computing alignments... [33.769s] Deallocating buffers... [0.017s] Loading trace points... [0.09s] Sorting trace points... [1.042s] Computing alignments... [33.83s] Deallocating buffers... [0.017s] Loading trace points... [0.041s] Sorting trace points... [1.281s] Computing alignments... [33.756s] Deallocating buffers... [0.167s] Loading trace points... [0.087s] Sorting trace points... [1.38s] Computing alignments... [34.083s] Deallocating buffers... [0.1s] Loading trace points... [0.056s] Sorting trace points... [1.459s] Computing alignments... [34.059s] Deallocating buffers... [0.194s] Loading trace points... [0.089s] Sorting trace points... [1.201s] Computing alignments... [34.252s] Deallocating buffers... [0.017s] Loading trace points... [0s] Sorting trace points... [1.282s] Computing alignments... [34.559s] Deallocating buffers... [0.028s] Loading trace points... [0s] [562.14s] Deallocating reference... [0.565s] Loading reference sequences... [30.19s] Masking reference... [30.901s] Initializing dictionary... [0.079s] Initializing temporary storage... [0.004s] Building reference histograms... [32.593s] Allocating buffers... [0s] Processing query block 1, reference block 9/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.38s] Building query seed array... [2.148s] Computing hash join... [7.121s] Masking low complexity seeds... [0.611s] Searching alignments... [78.588s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 1/2, index chunk 2/4. Building reference seed array... [13.002s] Building query seed array... [2.873s] Computing hash join... [7.135s] Masking low complexity seeds... [0.304s] Searching alignments... [52.105s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.876s] Building query seed array... [3.363s] Computing hash join... [6.685s] Masking low complexity seeds... [0.287s] Searching alignments... [43.133s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.396s] Building query seed array... [2.322s] Computing hash join... [6.906s] Masking low complexity seeds... [0.276s] Searching alignments... [39.752s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.841s] Building query seed array... [2.131s] Computing hash join... [6.863s] Masking low complexity seeds... [0.258s] Searching alignments... [44.167s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.434s] Building query seed array... [2.438s] Computing hash join... [7.048s] Masking low complexity seeds... [0.299s] Searching alignments... [32.33s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.771s] Building query seed array... [2.602s] Computing hash join... [7.138s] Masking low complexity seeds... [0.314s] Searching alignments... [36.233s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.71s] Building query seed array... [2.245s] Computing hash join... [7.113s] Masking low complexity seeds... [0.257s] Searching alignments... [30.277s] Deallocating memory... [0s] Deallocating buffers... [1.818s] Clearing query masking... [1.653s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [7.256s] Sorting trace points... [1.293s] Computing alignments... [32.954s] Deallocating buffers... [0.017s] Loading trace points... [0.055s] Sorting trace points... [0.9s] Computing alignments... [32.771s] Deallocating buffers... [0.015s] Loading trace points... [0.051s] Sorting trace points... [1.228s] Computing alignments... [32.855s] Deallocating buffers... [0.014s] Loading trace points... [0.07s] Sorting trace points... [1.219s] Computing alignments... [32.356s] Deallocating buffers... [0.017s] Loading trace points... [0.183s] Sorting trace points... [1.317s] Computing alignments... [32.685s] Deallocating buffers... [0.263s] Loading trace points... [0.099s] Sorting trace points... [1.281s] Computing alignments... [31.864s] Deallocating buffers... [0.071s] Loading trace points... [0.076s] Sorting trace points... [1.09s] Computing alignments... [31.456s] Deallocating buffers... [0.014s] Loading trace points... [0.073s] Sorting trace points... [1.328s] Computing alignments... [31.103s] Deallocating buffers... [0.117s] Loading trace points... [0.069s] Sorting trace points... [1.511s] Computing alignments... [32.451s] Deallocating buffers... [0.295s] Loading trace points... [0.041s] Sorting trace points... [1.415s] Computing alignments... [33.269s] Deallocating buffers... [0.122s] Loading trace points... [0.101s] Sorting trace points... [1.425s] Computing alignments... [33.499s] Deallocating buffers... [0.214s] Loading trace points... [0.068s] Sorting trace points... [1.208s] Computing alignments... [33.317s] Deallocating buffers... [0.056s] Loading trace points... [0.075s] Sorting trace points... [1.469s] Computing alignments... [33.748s] Deallocating buffers... [0.284s] Loading trace points... [0.078s] Sorting trace points... [1.543s] Computing alignments... [33.886s] Deallocating buffers... [0.157s] Loading trace points... [0.116s] Sorting trace points... [1.331s] Computing alignments... [33.724s] Deallocating buffers... [0.015s] Loading trace points... [0s] Sorting trace points... [1.088s] Computing alignments... [34.137s] Deallocating buffers... [0.019s] Loading trace points... [0s] [557.138s] Deallocating reference... [0.072s] Loading reference sequences... [29.378s] Masking reference... [30.9s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.004s] Building reference histograms... [32.716s] Allocating buffers... [0s] Processing query block 1, reference block 10/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.351s] Building query seed array... [2.084s] Computing hash join... [7.331s] Masking low complexity seeds... [0.259s] Searching alignments... [77.529s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.921s] Building query seed array... [3.22s] Computing hash join... [6.968s] Masking low complexity seeds... [0.257s] Searching alignments... [54.868s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.919s] Building query seed array... [2.743s] Computing hash join... [7.028s] Masking low complexity seeds... [0.277s] Searching alignments... [45.643s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.422s] Building query seed array... [2.433s] Computing hash join... [7.303s] Masking low complexity seeds... [0.258s] Searching alignments... [40.655s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.443s] Building query seed array... [2.105s] Computing hash join... [6.362s] Masking low complexity seeds... [0.246s] Searching alignments... [44.076s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.911s] Building query seed array... [2.488s] Computing hash join... [6.434s] Masking low complexity seeds... [0.315s] Searching alignments... [32.879s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.787s] Building query seed array... [2.579s] Computing hash join... [6.378s] Masking low complexity seeds... [0.259s] Searching alignments... [38.145s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.851s] Building query seed array... [2.204s] Computing hash join... [6.258s] Masking low complexity seeds... [0.263s] Searching alignments... [31.283s] Deallocating memory... [0s] Deallocating buffers... [2.011s] Clearing query masking... [1.705s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [6.737s] Sorting trace points... [1.364s] Computing alignments... [33.192s] Deallocating buffers... [0.017s] Loading trace points... [0.037s] Sorting trace points... [1.236s] Computing alignments... [33.002s] Deallocating buffers... [0.014s] Loading trace points... [0.116s] Sorting trace points... [1.054s] Computing alignments... [33.217s] Deallocating buffers... [0.053s] Loading trace points... [0.078s] Sorting trace points... [1.24s] Computing alignments... [32.539s] Deallocating buffers... [0.017s] Loading trace points... [0.055s] Sorting trace points... [0.946s] Computing alignments... [32.613s] Deallocating buffers... [0.015s] Loading trace points... [0.071s] Sorting trace points... [1.443s] Computing alignments... [32.074s] Deallocating buffers... [0.281s] Loading trace points... [0.099s] Sorting trace points... [1.12s] Computing alignments... [31.664s] Deallocating buffers... [0.016s] Loading trace points... [0.072s] Sorting trace points... [1.164s] Computing alignments... [31.32s] Deallocating buffers... [0.014s] Loading trace points... [0.058s] Sorting trace points... [1.267s] Computing alignments... [32.621s] Deallocating buffers... [0.014s] Loading trace points... [0.039s] Sorting trace points... [1.27s] Computing alignments... [33.513s] Deallocating buffers... [0.018s] Loading trace points... [0.075s] Sorting trace points... [1.295s] Computing alignments... [33.737s] Deallocating buffers... [0.014s] Loading trace points... [0.058s] Sorting trace points... [1.432s] Computing alignments... [33.54s] Deallocating buffers... [0.309s] Loading trace points... [0.04s] Sorting trace points... [1.348s] Computing alignments... [33.8s] Deallocating buffers... [0.015s] Loading trace points... [0.054s] Sorting trace points... [1.228s] Computing alignments... [33.95s] Deallocating buffers... [0.015s] Loading trace points... [0.047s] Sorting trace points... [1.368s] Computing alignments... [33.876s] Deallocating buffers... [0.157s] Loading trace points... [0s] Sorting trace points... [1.485s] Computing alignments... [34.365s] Deallocating buffers... [0.383s] Loading trace points... [0s] [558.563s] Deallocating reference... [0.069s] Loading reference sequences... [38.872s] Masking reference... [31.223s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.005s] Building reference histograms... [32.547s] Allocating buffers... [0s] Processing query block 1, reference block 11/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.557s] Building query seed array... [2.159s] Computing hash join... [6.596s] Masking low complexity seeds... [0.28s] Searching alignments... [77.141s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.717s] Building query seed array... [3.213s] Computing hash join... [6.694s] Masking low complexity seeds... [0.266s] Searching alignments... [53.745s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.718s] Building query seed array... [2.895s] Computing hash join... [6.714s] Masking low complexity seeds... [0.262s] Searching alignments... [46.999s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.4s] Building query seed array... [2.301s] Computing hash join... [6.69s] Masking low complexity seeds... [0.26s] Searching alignments... [39.815s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.264s] Building query seed array... [2.151s] Computing hash join... [6.922s] Masking low complexity seeds... [0.302s] Searching alignments... [41.013s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.345s] Building query seed array... [2.473s] Computing hash join... [6.319s] Masking low complexity seeds... [0.242s] Searching alignments... [32.424s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.419s] Building query seed array... [2.561s] Computing hash join... [6.94s] Masking low complexity seeds... [0.281s] Searching alignments... [35.175s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.148s] Building query seed array... [2.135s] Computing hash join... [6.686s] Masking low complexity seeds... [0.326s] Searching alignments... [29.764s] Deallocating memory... [0s] Deallocating buffers... [1.278s] Clearing query masking... [1.628s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [6.702s] Sorting trace points... [1.343s] Computing alignments... [33.531s] Deallocating buffers... [0.016s] Loading trace points... [0.001s] Sorting trace points... [1.235s] Computing alignments... [34.157s] Deallocating buffers... [0.014s] Loading trace points... [0.053s] Sorting trace points... [1.257s] Computing alignments... [34.052s] Deallocating buffers... [0.021s] Loading trace points... [0.068s] Sorting trace points... [1.259s] Computing alignments... [33.078s] Deallocating buffers... [0.014s] Loading trace points... [0.046s] Sorting trace points... [0.911s] Computing alignments... [33.441s] Deallocating buffers... [0.016s] Loading trace points... [0.062s] Sorting trace points... [1.189s] Computing alignments... [32.488s] Deallocating buffers... [0.029s] Loading trace points... [0.106s] Sorting trace points... [1.131s] Computing alignments... [31.937s] Deallocating buffers... [0.016s] Loading trace points... [0.058s] Sorting trace points... [1.184s] Computing alignments... [31.507s] Deallocating buffers... [0.017s] Loading trace points... [0.073s] Sorting trace points... [0.974s] Computing alignments... [33.031s] Deallocating buffers... [0.015s] Loading trace points... [0.04s] Sorting trace points... [1.19s] Computing alignments... [33.816s] Deallocating buffers... [0.017s] Loading trace points... [0.104s] Sorting trace points... [1.441s] Computing alignments... [33.88s] Deallocating buffers... [0.169s] Loading trace points... [0s] Sorting trace points... [1.102s] Computing alignments... [33.727s] Deallocating buffers... [0.015s] Loading trace points... [0.036s] Sorting trace points... [1.287s] Computing alignments... [34.113s] Deallocating buffers... [0.018s] Loading trace points... [0.429s] Sorting trace points... [1.616s] Computing alignments... [35.175s] Deallocating buffers... [0.292s] Loading trace points... [0.053s] Sorting trace points... [1.309s] Computing alignments... [34.514s] Deallocating buffers... [0.014s] Loading trace points... [0s] Sorting trace points... [1.293s] Computing alignments... [34.621s] Deallocating buffers... [0.026s] Loading trace points... [0s] [565.656s] Deallocating reference... [0.657s] Loading reference sequences... [29.324s] Masking reference... [32.104s] Initializing dictionary... [0.079s] Initializing temporary storage... [0.004s] Building reference histograms... [32.846s] Allocating buffers... [0s] Processing query block 1, reference block 12/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.413s] Building query seed array... [2.232s] Computing hash join... [7.159s] Masking low complexity seeds... [0.261s] Searching alignments... [78.748s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 1/2, index chunk 2/4. Building reference seed array... [13.116s] Building query seed array... [3.185s] Computing hash join... [7.034s] Masking low complexity seeds... [0.268s] Searching alignments... [55.749s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.672s] Building query seed array... [2.811s] Computing hash join... [7.168s] Masking low complexity seeds... [0.264s] Searching alignments... [45.955s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.798s] Building query seed array... [2.378s] Computing hash join... [6.488s] Masking low complexity seeds... [0.263s] Searching alignments... [40.795s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.427s] Building query seed array... [2.125s] Computing hash join... [6.293s] Masking low complexity seeds... [0.259s] Searching alignments... [42.997s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 2/2, index chunk 2/4. Building reference seed array... [13.396s] Building query seed array... [2.435s] Computing hash join... [6.804s] Masking low complexity seeds... [0.268s] Searching alignments... [32.534s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.479s] Building query seed array... [2.652s] Computing hash join... [6.542s] Masking low complexity seeds... [0.296s] Searching alignments... [37.933s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.42s] Building query seed array... [2.172s] Computing hash join... [6.449s] Masking low complexity seeds... [0.277s] Searching alignments... [31.06s] Deallocating memory... [0s] Deallocating buffers... [2.017s] Clearing query masking... [1.654s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [6.671s] Sorting trace points... [1.331s] Computing alignments... [32.812s] Deallocating buffers... [0.015s] Loading trace points... [0.055s] Sorting trace points... [1.265s] Computing alignments... [32.616s] Deallocating buffers... [0.017s] Loading trace points... [0.063s] Sorting trace points... [1.023s] Computing alignments... [32.894s] Deallocating buffers... [0.116s] Loading trace points... [0.119s] Sorting trace points... [1.052s] Computing alignments... [32.138s] Deallocating buffers... [0.016s] Loading trace points... [0.06s] Sorting trace points... [1.363s] Computing alignments... [32.56s] Deallocating buffers... [0.069s] Loading trace points... [0.093s] Sorting trace points... [1.359s] Computing alignments... [31.985s] Deallocating buffers... [0.226s] Loading trace points... [0.104s] Sorting trace points... [1.114s] Computing alignments... [31.472s] Deallocating buffers... [0.014s] Loading trace points... [0.066s] Sorting trace points... [1.369s] Computing alignments... [31.371s] Deallocating buffers... [0.293s] Loading trace points... [0.362s] Sorting trace points... [1.116s] Computing alignments... [32.432s] Deallocating buffers... [0.016s] Loading trace points... [0.062s] Sorting trace points... [1.287s] Computing alignments... [33.429s] Deallocating buffers... [0.014s] Loading trace points... [0.084s] Sorting trace points... [0.971s] Computing alignments... [33.548s] Deallocating buffers... [0.016s] Loading trace points... [0.068s] Sorting trace points... [1.554s] Computing alignments... [33.359s] Deallocating buffers... [0.302s] Loading trace points... [0.065s] Sorting trace points... [1.257s] Computing alignments... [33.544s] Deallocating buffers... [0.113s] Loading trace points... [0.046s] Sorting trace points... [1.362s] Computing alignments... [33.682s] Deallocating buffers... [0.236s] Loading trace points... [0.068s] Sorting trace points... [1.295s] Computing alignments... [33.708s] Deallocating buffers... [0.134s] Loading trace points... [0s] Sorting trace points... [1.311s] Computing alignments... [33.991s] Deallocating buffers... [0.028s] Loading trace points... [0s] [555.43s] Deallocating reference... [0.073s] Loading reference sequences... [29.52s] Masking reference... [30.892s] Initializing dictionary... [0.079s] Initializing temporary storage... [0.004s] Building reference histograms... [32.711s] Allocating buffers... [0s] Processing query block 1, reference block 13/14, shape 1/2, index chunk 1/4. Building reference seed array... [9.934s] Building query seed array... [2.22s] Computing hash join... [7.175s] Masking low complexity seeds... [0.268s] Searching alignments... [79.155s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.969s] Building query seed array... [3.036s] Computing hash join... [6.987s] Masking low complexity seeds... [0.282s] Searching alignments... [52.884s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 1/2, index chunk 3/4. Building reference seed array... [14.271s] Building query seed array... [2.808s] Computing hash join... [6.752s] Masking low complexity seeds... [0.271s] Searching alignments... [46.441s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.554s] Building query seed array... [2.538s] Computing hash join... [7.111s] Masking low complexity seeds... [0.267s] Searching alignments... [41.564s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.52s] Building query seed array... [2.144s] Computing hash join... [6.99s] Masking low complexity seeds... [0.321s] Searching alignments... [44.168s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.879s] Building query seed array... [2.391s] Computing hash join... [6.319s] Masking low complexity seeds... [0.261s] Searching alignments... [32.78s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 2/2, index chunk 3/4. Building reference seed array... [14.361s] Building query seed array... [2.654s] Computing hash join... [6.417s] Masking low complexity seeds... [0.252s] Searching alignments... [38.224s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.615s] Building query seed array... [2.14s] Computing hash join... [6.418s] Masking low complexity seeds... [0.259s] Searching alignments... [31.321s] Deallocating memory... [0s] Deallocating buffers... [2.047s] Clearing query masking... [1.658s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [6.859s] Sorting trace points... [1.389s] Computing alignments... [33.338s] Deallocating buffers... [0.015s] Loading trace points... [0.058s] Sorting trace points... [1.285s] Computing alignments... [32.941s] Deallocating buffers... [0.018s] Loading trace points... [0.092s] Sorting trace points... [1.391s] Computing alignments... [33.258s] Deallocating buffers... [0.195s] Loading trace points... [0.066s] Sorting trace points... [1.308s] Computing alignments... [32.521s] Deallocating buffers... [0.014s] Loading trace points... [0.051s] Sorting trace points... [0.949s] Computing alignments... [32.588s] Deallocating buffers... [0.022s] Loading trace points... [0.097s] Sorting trace points... [1.248s] Computing alignments... [32.019s] Deallocating buffers... [0.013s] Loading trace points... [0.071s] Sorting trace points... [1.26s] Computing alignments... [31.517s] Deallocating buffers... [0.139s] Loading trace points... [0.041s] Sorting trace points... [1.185s] Computing alignments... [31.375s] Deallocating buffers... [0.014s] Loading trace points... [0.051s] Sorting trace points... [1.234s] Computing alignments... [32.461s] Deallocating buffers... [0.014s] Loading trace points... [0.059s] Sorting trace points... [1.369s] Computing alignments... [33.276s] Deallocating buffers... [0.179s] Loading trace points... [0.06s] Sorting trace points... [1.525s] Computing alignments... [33.478s] Deallocating buffers... [0.266s] Loading trace points... [0.04s] Sorting trace points... [1.485s] Computing alignments... [33.554s] Deallocating buffers... [0.152s] Loading trace points... [0.066s] Sorting trace points... [1.287s] Computing alignments... [33.585s] Deallocating buffers... [0.014s] Loading trace points... [0.062s] Sorting trace points... [1.265s] Computing alignments... [33.936s] Deallocating buffers... [0.106s] Loading trace points... [0.114s] Sorting trace points... [1.624s] Computing alignments... [33.707s] Deallocating buffers... [0.375s] Loading trace points... [0s] Sorting trace points... [1.474s] Computing alignments... [34.397s] Deallocating buffers... [0.273s] Loading trace points... [0s] [559.121s] Deallocating reference... [0.072s] Loading reference sequences... [27.348s] Masking reference... [25.19s] Initializing dictionary... [0.062s] Initializing temporary storage... [0.004s] Building reference histograms... [27.172s] Allocating buffers... [0s] Processing query block 1, reference block 14/14, shape 1/2, index chunk 1/4. Building reference seed array... [8.736s] Building query seed array... [2.123s] Computing hash join... [4.983s] Masking low complexity seeds... [0.257s] Searching alignments... [60.321s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 1/2, index chunk 2/4. Building reference seed array... [10.632s] Building query seed array... [2.801s] Computing hash join... [5.257s] Masking low complexity seeds... [0.256s] Searching alignments... [41.936s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 1/2, index chunk 3/4. Building reference seed array... [11.79s] Building query seed array... [2.838s] Computing hash join... [4.81s] Masking low complexity seeds... [0.25s] Searching alignments... [38.349s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 1/2, index chunk 4/4. Building reference seed array... [8.657s] Building query seed array... [2.17s] Computing hash join... [5.134s] Masking low complexity seeds... [0.258s] Searching alignments... [32.852s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 2/2, index chunk 1/4. Building reference seed array... [8.336s] Building query seed array... [2.096s] Computing hash join... [4.859s] Masking low complexity seeds... [0.262s] Searching alignments... [34.569s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 2/2, index chunk 2/4. Building reference seed array... [10.364s] Building query seed array... [2.393s] Computing hash join... [4.903s] Masking low complexity seeds... [0.236s] Searching alignments... [26.511s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 2/2, index chunk 3/4. Building reference seed array... [10.744s] Building query seed array... [2.463s] Computing hash join... [4.83s] Masking low complexity seeds... [0.239s] Searching alignments... [30.285s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 2/2, index chunk 4/4. Building reference seed array... [8.132s] Building query seed array... [2.177s] Computing hash join... [4.762s] Masking low complexity seeds... [0.247s] Searching alignments... [24.845s] Deallocating memory... [0s] Deallocating buffers... [1.079s] Clearing query masking... [1.618s] Opening temporary output file... [0.011s] Computing alignments... Loading trace points... [10.877s] Sorting trace points... [2.246s] Computing alignments... [52.314s] Deallocating buffers... [0.023s] Loading trace points... [0.131s] Sorting trace points... [1.741s] Computing alignments... [51.784s] Deallocating buffers... [0.059s] Loading trace points... [0.544s] Sorting trace points... [1.716s] Computing alignments... [51.195s] Deallocating buffers... [0.039s] Loading trace points... [1.107s] Sorting trace points... [2.021s] Computing alignments... [50.072s] Deallocating buffers... [0.022s] Loading trace points... [0.166s] Sorting trace points... [1.658s] Computing alignments... [52.496s] Deallocating buffers... [0.025s] Loading trace points... [0.057s] Sorting trace points... [1.892s] Computing alignments... [53.414s] Deallocating buffers... [0.132s] Loading trace points... [0.068s] Sorting trace points... [1.976s] Computing alignments... [53.776s] Deallocating buffers... [0.024s] Loading trace points... [0s] Sorting trace points... [1.731s] Computing alignments... [53.792s] Deallocating buffers... [0.041s] Loading trace points... [0s] [447.329s] Deallocating reference... [0.086s] Loading reference sequences... [0.084s] Deallocating buffers... [0s] Joining output blocks... Joining output blocks... [2196.74s] [2196.74s] Deallocating queries... [0.075s] Loading query sequences... [0s] Closing the input file... [0.005s] Closing the output file... Loading dictionary... [4.346s] [5.522s] Closing the database... [0s] Cleaning up... [0s] Total time = 18747.8s Reported 2297365947 pairwise alignments, 2297365947 HSPs. 13880422 queries aligned. DIAMOND BLASTx on /gscratch/srlab/sam/data/P_verrucosa/RNAseq/C17_R2.fastp-trim.20230215.fq.gz complete: C17_R2.blastx.meganized.daa Now MEGANizing C17_R2.blastx.meganized.daa Version MEGAN Community Edition (version 6.22.0, built 19 Feb 2022) Author(s) Daniel H. Huson Copyright (C) 2022 Daniel H. Huson. This program comes with ABSOLUTELY NO WARRANTY. Java version: 17.0.2 Functional classifications to use: EC, EGGNOG, GTDB, INTERPRO2GO, SEED Loading ncbi.map: 2,396,736 Loading ncbi.tre: 2,396,740 Loading ec.map: 8,200 Loading ec.tre: 8,204 Loading eggnog.map: 30,875 Loading eggnog.tre: 30,986 Loading gtdb.map: 240,103 Loading gtdb.tre: 240,107 Loading interpro2go.map: 14,242 Loading interpro2go.tre: 28,907 Loading seed.map: 961 Loading seed.tre: 962 Meganizing: C17_R2.blastx.meganized.daa Meganizing init Annotating DAA file using FAST mode (accession database and first accession per line) Annotating references 10% 20% 30% 40% 50% 60% 70% 100% (544.7s) Writing 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (1.4s) Binning reads Initializing... Initializing binning... Using 'Naive LCA' algorithm for binning: Taxonomy Using Best-Hit algorithm for binning: SEED Using Best-Hit algorithm for binning: EGGNOG Using 'Naive LCA' algorithm for binning: GTDB Using Best-Hit algorithm for binning: EC Using Best-Hit algorithm for binning: INTERPRO2GO Binning reads... Binning reads Analyzing alignments 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (4,315.5s) Total reads: 13,880,422 With hits: 13,880,422 Alignments: 2,286,392,247 Assig. Taxonomy: 12,943,662 Assig. SEED: 105,479 Assig. EGGNOG: 52,877 Assig. GTDB: 372,309 Assig. EC: 2,142,765 Assig. INTERPRO2GO: 1,188,863 MinSupport set to: 6940 Binning reads Applying min-support & disabled filter to Taxonomy... 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (0.4s) Min-supp. changes: 4,163 Binning reads Applying min-support & disabled filter to GTDB... 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (9.8s) Min-supp. changes: 3,054 Binning reads Writing classification tables 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (28.2s) Binning reads Syncing 100% (0.3s) Class. Taxonomy: 83 Class. SEED: 496 Class. EGGNOG: 1,795 Class. GTDB: 17 Class. EC: 2,414 Class. INTERPRO2GO: 8,330 Total time: 4,909s Peak memory: 34.9 of 195.3G MEGANization of C17_R2.blastx.meganized.daa completed. Generating MD5 checksum for /gscratch/srlab/sam/data/P_verrucosa/RNAseq/C18_R1.fastp-trim.20230215.fq.gz... 7afcd5d963bcfa35aa049f36f7faf51b /gscratch/srlab/sam/data/P_verrucosa/RNAseq/C18_R1.fastp-trim.20230215.fq.gz Running DIAMOND BLASTx on /gscratch/srlab/sam/data/P_verrucosa/RNAseq/C18_R1.fastp-trim.20230215.fq.gz. diamond v2.1.1.155 (C) Max Planck Society for the Advancement of Science Documentation, support and updates available at http://www.diamondsearch.org Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021) #CPU threads: 40 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: Percentage range of top alignment score to report hits: 5 Opening the database... [0.358s] Database: /gscratch/srlab/blastdbs/20230215-ncbi-nr/20230215-ncbi-nr.dmnd (type: Diamond database, sequences: 526308523, letters: 207134680681) Block size = 15000000000 Opening the input file... [0.68s] Opening the output file... [0s] Loading query sequences... [69.323s] Masking queries... [17.8s] Algorithm: Double-indexed Building query histograms... [17.256s] Loading reference sequences... [29.353s] Masking reference... [32.059s] Initializing dictionary... [0.079s] Initializing temporary storage... [0.008s] Building reference histograms... [32.185s] Allocating buffers... [0.001s] Processing query block 1, reference block 1/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.307s] Building query seed array... [1.965s] Computing hash join... [6.662s] Masking low complexity seeds... [0.411s] Searching alignments... [77.754s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.803s] Building query seed array... [2.665s] Computing hash join... [6.615s] Masking low complexity seeds... [0.276s] Searching alignments... [49.85s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.959s] Building query seed array... [2.634s] Computing hash join... [6.529s] Masking low complexity seeds... [0.223s] Searching alignments... [42.19s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.318s] Building query seed array... [2.224s] Computing hash join... [6.927s] Masking low complexity seeds... [0.347s] Searching alignments... [37.995s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.355s] Building query seed array... [1.896s] Computing hash join... [6.528s] Masking low complexity seeds... [0.207s] Searching alignments... [39.654s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.243s] Building query seed array... [2.225s] Computing hash join... [6.258s] Masking low complexity seeds... [0.205s] Searching alignments... [30.857s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.741s] Building query seed array... [2.318s] Computing hash join... [6.342s] Masking low complexity seeds... [0.206s] Searching alignments... [35.121s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.685s] Building query seed array... [1.983s] Computing hash join... [6.491s] Masking low complexity seeds... [0.209s] Searching alignments... [29.263s] Deallocating memory... [0s] Deallocating buffers... [1.087s] Clearing query masking... [1.576s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [6.752s] Sorting trace points... [1.288s] Computing alignments... [32.422s] Deallocating buffers... [0.016s] Loading trace points... [0.103s] Sorting trace points... [0.936s] Computing alignments... [32.006s] Deallocating buffers... [0.016s] Loading trace points... [0.049s] Sorting trace points... [1.176s] Computing alignments... [32.499s] Deallocating buffers... [0.015s] Loading trace points... [0.152s] Sorting trace points... [1.01s] Computing alignments... [31.846s] Deallocating buffers... [0.016s] Loading trace points... [0.051s] Sorting trace points... [1.195s] Computing alignments... [31.669s] Deallocating buffers... [0.016s] Loading trace points... [0.043s] Sorting trace points... [1.212s] Computing alignments... [31.169s] Deallocating buffers... [0.013s] Loading trace points... [0.05s] Sorting trace points... [1.145s] Computing alignments... [30.9s] Deallocating buffers... [0.016s] Loading trace points... [0.915s] Sorting trace points... [0.993s] Computing alignments... [30.608s] Deallocating buffers... [0.015s] Loading trace points... [0.111s] Sorting trace points... [1.167s] Computing alignments... [30.856s] Deallocating buffers... [0.013s] Loading trace points... [0.069s] Sorting trace points... [1.196s] Computing alignments... [31.422s] Deallocating buffers... [0.017s] Loading trace points... [0.064s] Sorting trace points... [1.188s] Computing alignments... [31.45s] Deallocating buffers... [0.013s] Loading trace points... [0.074s] Sorting trace points... [0.917s] Computing alignments... [31.789s] Deallocating buffers... [0.021s] Loading trace points... [0.055s] Sorting trace points... [1.016s] Computing alignments... [31.544s] Deallocating buffers... [0.015s] Loading trace points... [0.002s] Sorting trace points... [0.9s] Computing alignments... [31.645s] Deallocating buffers... [0.015s] Loading trace points... [0s] Sorting trace points... [0.971s] Computing alignments... [31.667s] Deallocating buffers... [0.014s] Loading trace points... [0s] Sorting trace points... [1.165s] Computing alignments... [31.198s] Deallocating buffers... [0.016s] Loading trace points... [0s] [531.12s] Deallocating reference... [0.055s] Loading reference sequences... [29.652s] Masking reference... [31.803s] Initializing dictionary... [0.079s] Initializing temporary storage... [0.008s] Building reference histograms... [32.256s] Allocating buffers... [0s] Processing query block 1, reference block 2/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.719s] Building query seed array... [2.023s] Computing hash join... [5.95s] Masking low complexity seeds... [0.229s] Searching alignments... [75.296s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.775s] Building query seed array... [2.746s] Computing hash join... [5.657s] Masking low complexity seeds... [0.222s] Searching alignments... [48.88s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.473s] Building query seed array... [2.505s] Computing hash join... [5.879s] Masking low complexity seeds... [0.266s] Searching alignments... [42.361s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.055s] Building query seed array... [2.119s] Computing hash join... [5.859s] Masking low complexity seeds... [0.242s] Searching alignments... [37.721s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.208s] Building query seed array... [1.901s] Computing hash join... [5.833s] Masking low complexity seeds... [0.232s] Searching alignments... [37.6s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.642s] Building query seed array... [2.282s] Computing hash join... [5.857s] Masking low complexity seeds... [0.235s] Searching alignments... [30.553s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.505s] Building query seed array... [2.281s] Computing hash join... [5.62s] Masking low complexity seeds... [0.237s] Searching alignments... [33.211s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.517s] Building query seed array... [1.971s] Computing hash join... [5.524s] Masking low complexity seeds... [0.192s] Searching alignments... [28.238s] Deallocating memory... [0s] Deallocating buffers... [1.529s] Clearing query masking... [1.519s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [6.827s] Sorting trace points... [1.236s] Computing alignments... [32.137s] Deallocating buffers... [0.022s] Loading trace points... [0.125s] Sorting trace points... [1.22s] Computing alignments... [31.963s] Deallocating buffers... [0.088s] Loading trace points... [0.057s] Sorting trace points... [1.29s] Computing alignments... [32.16s] Deallocating buffers... [0.015s] Loading trace points... [0.071s] Sorting trace points... [1.226s] Computing alignments... [31.613s] Deallocating buffers... [0.014s] Loading trace points... [0.047s] Sorting trace points... [1.224s] Computing alignments... [31.399s] Deallocating buffers... [0.017s] Loading trace points... [0.001s] Sorting trace points... [1.175s] Computing alignments... [31.005s] Deallocating buffers... [0.016s] Loading trace points... [0.061s] Sorting trace points... [1.134s] Computing alignments... [30.648s] Deallocating buffers... [0.013s] Loading trace points... [0.06s] Sorting trace points... [1.154s] Computing alignments... [30.265s] Deallocating buffers... [0.016s] Loading trace points... [0.088s] Sorting trace points... [0.822s] Computing alignments... [30.446s] Deallocating buffers... [0.014s] Loading trace points... [0.052s] Sorting trace points... [1.116s] Computing alignments... [31.126s] Deallocating buffers... [0.014s] Loading trace points... [0.076s] Sorting trace points... [1.002s] Computing alignments... [31.094s] Deallocating buffers... [0.014s] Loading trace points... [0.07s] Sorting trace points... [1.194s] Computing alignments... [31.242s] Deallocating buffers... [0.013s] Loading trace points... [0.087s] Sorting trace points... [1.18s] Computing alignments... [31.171s] Deallocating buffers... [0.017s] Loading trace points... [0.086s] Sorting trace points... [1.115s] Computing alignments... [31.338s] Deallocating buffers... [0.016s] Loading trace points... [0.083s] Sorting trace points... [1.197s] Computing alignments... [31.39s] Deallocating buffers... [0.014s] Loading trace points... [0s] Sorting trace points... [1.183s] Computing alignments... [30.97s] Deallocating buffers... [0.017s] Loading trace points... [0s] [526.696s] Deallocating reference... [0.057s] Loading reference sequences... [31.687s] Masking reference... [31.09s] Initializing dictionary... [0.077s] Initializing temporary storage... [0.007s] Building reference histograms... [33.271s] Allocating buffers... [0s] Processing query block 1, reference block 3/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.001s] Building query seed array... [1.979s] Computing hash join... [6.508s] Masking low complexity seeds... [0.227s] Searching alignments... [76.801s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.468s] Building query seed array... [2.829s] Computing hash join... [6.663s] Masking low complexity seeds... [0.218s] Searching alignments... [48.698s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.629s] Building query seed array... [2.682s] Computing hash join... [6.49s] Masking low complexity seeds... [0.217s] Searching alignments... [41.825s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.581s] Building query seed array... [2.244s] Computing hash join... [6.58s] Masking low complexity seeds... [0.238s] Searching alignments... [38.54s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.214s] Building query seed array... [2.058s] Computing hash join... [6.562s] Masking low complexity seeds... [0.233s] Searching alignments... [38.43s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.833s] Building query seed array... [2.274s] Computing hash join... [6.561s] Masking low complexity seeds... [0.226s] Searching alignments... [30.578s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.855s] Building query seed array... [2.42s] Computing hash join... [6.411s] Masking low complexity seeds... [0.216s] Searching alignments... [34.385s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.213s] Building query seed array... [1.899s] Computing hash join... [6.224s] Masking low complexity seeds... [0.208s] Searching alignments... [28.948s] Deallocating memory... [0s] Deallocating buffers... [1.276s] Clearing query masking... [1.551s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [6.829s] Sorting trace points... [1.311s] Computing alignments... [32.21s] Deallocating buffers... [0.017s] Loading trace points... [0.095s] Sorting trace points... [1.217s] Computing alignments... [32.457s] Deallocating buffers... [0.024s] Loading trace points... [0.061s] Sorting trace points... [1.081s] Computing alignments... [32.44s] Deallocating buffers... [0.015s] Loading trace points... [0.056s] Sorting trace points... [1.171s] Computing alignments... [31.825s] Deallocating buffers... [0.017s] Loading trace points... [0.058s] Sorting trace points... [1.179s] Computing alignments... [31.567s] Deallocating buffers... [0.017s] Loading trace points... [0.058s] Sorting trace points... [1.135s] Computing alignments... [31.186s] Deallocating buffers... [0.017s] Loading trace points... [0.079s] Sorting trace points... [1.16s] Computing alignments... [30.91s] Deallocating buffers... [0.013s] Loading trace points... [0.062s] Sorting trace points... [0.876s] Computing alignments... [30.317s] Deallocating buffers... [0.016s] Loading trace points... [0.074s] Sorting trace points... [1.171s] Computing alignments... [30.584s] Deallocating buffers... [0.013s] Loading trace points... [0.065s] Sorting trace points... [1.067s] Computing alignments... [31.315s] Deallocating buffers... [0.016s] Loading trace points... [0.072s] Sorting trace points... [1.199s] Computing alignments... [31.23s] Deallocating buffers... [0.013s] Loading trace points... [0.077s] Sorting trace points... [1.157s] Computing alignments... [31.54s] Deallocating buffers... [0.023s] Loading trace points... [0.037s] Sorting trace points... [0.968s] Computing alignments... [31.382s] Deallocating buffers... [0.015s] Loading trace points... [0s] Sorting trace points... [1.214s] Computing alignments... [31.487s] Deallocating buffers... [0.014s] Loading trace points... [0.15s] Sorting trace points... [0.947s] Computing alignments... [31.508s] Deallocating buffers... [0.015s] Loading trace points... [0s] Sorting trace points... [1.181s] Computing alignments... [31.126s] Deallocating buffers... [0.017s] Loading trace points... [0s] [529.408s] Deallocating reference... [0.063s] Loading reference sequences... [31.731s] Masking reference... [30.883s] Initializing dictionary... [0.077s] Initializing temporary storage... [0.007s] Building reference histograms... [32.535s] Allocating buffers... [0s] Processing query block 1, reference block 4/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.091s] Building query seed array... [1.965s] Computing hash join... [6.109s] Masking low complexity seeds... [0.333s] Searching alignments... [77.086s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.988s] Building query seed array... [2.844s] Computing hash join... [6.437s] Masking low complexity seeds... [0.218s] Searching alignments... [48.197s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.515s] Building query seed array... [2.582s] Computing hash join... [6.19s] Masking low complexity seeds... [0.235s] Searching alignments... [41.576s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.511s] Building query seed array... [2.133s] Computing hash join... [6.415s] Masking low complexity seeds... [0.236s] Searching alignments... [37.794s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.536s] Building query seed array... [1.906s] Computing hash join... [6.222s] Masking low complexity seeds... [0.228s] Searching alignments... [38.039s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 2/2, index chunk 2/4. Building reference seed array... [13.08s] Building query seed array... [2.277s] Computing hash join... [6.572s] Masking low complexity seeds... [0.214s] Searching alignments... [30.481s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.955s] Building query seed array... [2.343s] Computing hash join... [6.253s] Masking low complexity seeds... [0.235s] Searching alignments... [34.823s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.216s] Building query seed array... [1.917s] Computing hash join... [5.984s] Masking low complexity seeds... [0.215s] Searching alignments... [28.922s] Deallocating memory... [0s] Deallocating buffers... [1.695s] Clearing query masking... [1.508s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [6.736s] Sorting trace points... [1.288s] Computing alignments... [32.27s] Deallocating buffers... [0.016s] Loading trace points... [0.094s] Sorting trace points... [1.212s] Computing alignments... [32.391s] Deallocating buffers... [0.021s] Loading trace points... [0.054s] Sorting trace points... [1.302s] Computing alignments... [32.313s] Deallocating buffers... [0.014s] Loading trace points... [0.001s] Sorting trace points... [1.209s] Computing alignments... [31.683s] Deallocating buffers... [0.017s] Loading trace points... [0.073s] Sorting trace points... [0.925s] Computing alignments... [31.495s] Deallocating buffers... [0.015s] Loading trace points... [0.059s] Sorting trace points... [1.009s] Computing alignments... [31.135s] Deallocating buffers... [0.014s] Loading trace points... [0.043s] Sorting trace points... [0.836s] Computing alignments... [30.755s] Deallocating buffers... [0.015s] Loading trace points... [0.069s] Sorting trace points... [1.121s] Computing alignments... [30.319s] Deallocating buffers... [0.016s] Loading trace points... [0.075s] Sorting trace points... [1.205s] Computing alignments... [30.606s] Deallocating buffers... [0.013s] Loading trace points... [0.07s] Sorting trace points... [1.191s] Computing alignments... [31.314s] Deallocating buffers... [0.018s] Loading trace points... [0.097s] Sorting trace points... [1.21s] Computing alignments... [31.234s] Deallocating buffers... [0.017s] Loading trace points... [0.173s] Sorting trace points... [1.175s] Computing alignments... [31.613s] Deallocating buffers... [0.02s] Loading trace points... [0.061s] Sorting trace points... [1.043s] Computing alignments... [31.431s] Deallocating buffers... [0.014s] Loading trace points... [0.077s] Sorting trace points... [1.167s] Computing alignments... [31.373s] Deallocating buffers... [0.014s] Loading trace points... [0.107s] Sorting trace points... [1.181s] Computing alignments... [31.561s] Deallocating buffers... [0.013s] Loading trace points... [0s] Sorting trace points... [1.023s] Computing alignments... [31.07s] Deallocating buffers... [0.014s] Loading trace points... [0s] [528.888s] Deallocating reference... [0.058s] Loading reference sequences... [29.267s] Masking reference... [30.883s] Initializing dictionary... [0.077s] Initializing temporary storage... [0.008s] Building reference histograms... [32.999s] Allocating buffers... [0s] Processing query block 1, reference block 5/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.306s] Building query seed array... [1.965s] Computing hash join... [5.661s] Masking low complexity seeds... [0.234s] Searching alignments... [73.616s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 1/2, index chunk 2/4. Building reference seed array... [13.702s] Building query seed array... [2.814s] Computing hash join... [5.894s] Masking low complexity seeds... [0.216s] Searching alignments... [51.072s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.935s] Building query seed array... [2.543s] Computing hash join... [5.803s] Masking low complexity seeds... [0.233s] Searching alignments... [42.857s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.421s] Building query seed array... [2.163s] Computing hash join... [6.236s] Masking low complexity seeds... [0.235s] Searching alignments... [38.566s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.298s] Building query seed array... [1.895s] Computing hash join... [5.992s] Masking low complexity seeds... [0.212s] Searching alignments... [38.162s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.836s] Building query seed array... [2.186s] Computing hash join... [6.003s] Masking low complexity seeds... [0.252s] Searching alignments... [30.392s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.777s] Building query seed array... [2.359s] Computing hash join... [6.031s] Masking low complexity seeds... [0.225s] Searching alignments... [34.416s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.562s] Building query seed array... [2.049s] Computing hash join... [5.807s] Masking low complexity seeds... [0.255s] Searching alignments... [29.154s] Deallocating memory... [0s] Deallocating buffers... [1.841s] Clearing query masking... [1.494s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [6.507s] Sorting trace points... [1.301s] Computing alignments... [32.078s] Deallocating buffers... [0.016s] Loading trace points... [0.036s] Sorting trace points... [1.093s] Computing alignments... [31.751s] Deallocating buffers... [0.014s] Loading trace points... [0.063s] Sorting trace points... [1.04s] Computing alignments... [32.291s] Deallocating buffers... [0.016s] Loading trace points... [0.001s] Sorting trace points... [1.053s] Computing alignments... [31.573s] Deallocating buffers... [0.014s] Loading trace points... [0.121s] Sorting trace points... [1.174s] Computing alignments... [31.409s] Deallocating buffers... [0.013s] Loading trace points... [0.05s] Sorting trace points... [1.154s] Computing alignments... [30.916s] Deallocating buffers... [0.013s] Loading trace points... [0.039s] Sorting trace points... [0.863s] Computing alignments... [30.525s] Deallocating buffers... [0.015s] Loading trace points... [0.092s] Sorting trace points... [1.185s] Computing alignments... [30.151s] Deallocating buffers... [0.016s] Loading trace points... [0.083s] Sorting trace points... [1.195s] Computing alignments... [30.463s] Deallocating buffers... [0.013s] Loading trace points... [0.15s] Sorting trace points... [1.167s] Computing alignments... [31.236s] Deallocating buffers... [0.016s] Loading trace points... [0.063s] Sorting trace points... [0.934s] Computing alignments... [31.092s] Deallocating buffers... [0.014s] Loading trace points... [0.074s] Sorting trace points... [1.171s] Computing alignments... [31.401s] Deallocating buffers... [0.021s] Loading trace points... [0.001s] Sorting trace points... [1.21s] Computing alignments... [31.21s] Deallocating buffers... [0.013s] Loading trace points... [0.081s] Sorting trace points... [1.241s] Computing alignments... [31.369s] Deallocating buffers... [0.017s] Loading trace points... [0.077s] Sorting trace points... [1.201s] Computing alignments... [31.45s] Deallocating buffers... [0.013s] Loading trace points... [0s] Sorting trace points... [1.173s] Computing alignments... [30.961s] Deallocating buffers... [0.014s] Loading trace points... [0s] [525.922s] Deallocating reference... [0.057s] Loading reference sequences... [29.566s] Masking reference... [30.875s] Initializing dictionary... [0.077s] Initializing temporary storage... [0.008s] Building reference histograms... [33.012s] Allocating buffers... [0s] Processing query block 1, reference block 6/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.381s] Building query seed array... [1.9s] Computing hash join... [6.038s] Masking low complexity seeds... [0.236s] Searching alignments... [73.398s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 1/2, index chunk 2/4. Building reference seed array... [13.07s] Building query seed array... [2.744s] Computing hash join... [6.332s] Masking low complexity seeds... [0.247s] Searching alignments... [48.51s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.763s] Building query seed array... [2.531s] Computing hash join... [6.905s] Masking low complexity seeds... [0.23s] Searching alignments... [41.761s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.846s] Building query seed array... [2.163s] Computing hash join... [6.728s] Masking low complexity seeds... [0.239s] Searching alignments... [39.29s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.001s] Building query seed array... [1.835s] Computing hash join... [6.336s] Masking low complexity seeds... [0.23s] Searching alignments... [37.072s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.931s] Building query seed array... [2.199s] Computing hash join... [6.273s] Masking low complexity seeds... [0.227s] Searching alignments... [30.62s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.85s] Building query seed array... [2.353s] Computing hash join... [6.443s] Masking low complexity seeds... [0.202s] Searching alignments... [32.702s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.384s] Building query seed array... [1.898s] Computing hash join... [6.454s] Masking low complexity seeds... [0.198s] Searching alignments... [27.631s] Deallocating memory... [0s] Deallocating buffers... [1.75s] Clearing query masking... [1.515s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [6.864s] Sorting trace points... [1.266s] Computing alignments... [31.872s] Deallocating buffers... [0.015s] Loading trace points... [0.001s] Sorting trace points... [1.288s] Computing alignments... [31.345s] Deallocating buffers... [0.106s] Loading trace points... [0.063s] Sorting trace points... [1.248s] Computing alignments... [31.905s] Deallocating buffers... [0.014s] Loading trace points... [0.083s] Sorting trace points... [1.199s] Computing alignments... [31.379s] Deallocating buffers... [0.014s] Loading trace points... [0.054s] Sorting trace points... [1.018s] Computing alignments... [31.046s] Deallocating buffers... [0.014s] Loading trace points... [0.053s] Sorting trace points... [1.18s] Computing alignments... [30.667s] Deallocating buffers... [0.013s] Loading trace points... [0.095s] Sorting trace points... [0.843s] Computing alignments... [30.51s] Deallocating buffers... [0.014s] Loading trace points... [0.059s] Sorting trace points... [1.135s] Computing alignments... [30.083s] Deallocating buffers... [0.013s] Loading trace points... [0.103s] Sorting trace points... [1.149s] Computing alignments... [30.389s] Deallocating buffers... [0.016s] Loading trace points... [0.049s] Sorting trace points... [0.865s] Computing alignments... [31.122s] Deallocating buffers... [0.015s] Loading trace points... [0.174s] Sorting trace points... [1.18s] Computing alignments... [30.941s] Deallocating buffers... [0.016s] Loading trace points... [0.056s] Sorting trace points... [1.205s] Computing alignments... [31.001s] Deallocating buffers... [0.013s] Loading trace points... [0.088s] Sorting trace points... [1.215s] Computing alignments... [30.991s] Deallocating buffers... [0.016s] Loading trace points... [0.052s] Sorting trace points... [1.133s] Computing alignments... [31.221s] Deallocating buffers... [0.016s] Loading trace points... [0.088s] Sorting trace points... [0.876s] Computing alignments... [31.249s] Deallocating buffers... [0.015s] Loading trace points... [0s] Sorting trace points... [1.187s] Computing alignments... [30.805s] Deallocating buffers... [0.013s] Loading trace points... [0s] [522.849s] Deallocating reference... [0.059s] Loading reference sequences... [30.737s] Masking reference... [30.941s] Initializing dictionary... [0.077s] Initializing temporary storage... [0.006s] Building reference histograms... [33.477s] Allocating buffers... [0.001s] Processing query block 1, reference block 7/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.312s] Building query seed array... [1.979s] Computing hash join... [6.179s] Masking low complexity seeds... [0.217s] Searching alignments... [75.666s] Deallocating memory... [0.001s] Processing query block 1, reference block 7/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.671s] Building query seed array... [2.89s] Computing hash join... [6.802s] Masking low complexity seeds... [0.224s] Searching alignments... [47.463s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.757s] Building query seed array... [2.664s] Computing hash join... [6.316s] Masking low complexity seeds... [0.218s] Searching alignments... [42.593s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.238s] Building query seed array... [2.254s] Computing hash join... [6.649s] Masking low complexity seeds... [0.248s] Searching alignments... [37.56s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.195s] Building query seed array... [1.867s] Computing hash join... [6.528s] Masking low complexity seeds... [0.223s] Searching alignments... [38.026s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.712s] Building query seed array... [2.236s] Computing hash join... [6.758s] Masking low complexity seeds... [0.217s] Searching alignments... [30.674s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.924s] Building query seed array... [2.446s] Computing hash join... [6.432s] Masking low complexity seeds... [0.248s] Searching alignments... [34.826s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.255s] Building query seed array... [1.898s] Computing hash join... [6.503s] Masking low complexity seeds... [0.219s] Searching alignments... [28.373s] Deallocating memory... [0s] Deallocating buffers... [1.796s] Clearing query masking... [1.526s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [6.641s] Sorting trace points... [1.331s] Computing alignments... [32.194s] Deallocating buffers... [0.016s] Loading trace points... [0.058s] Sorting trace points... [1.285s] Computing alignments... [32.455s] Deallocating buffers... [0.281s] Loading trace points... [0.061s] Sorting trace points... [1.254s] Computing alignments... [32.343s] Deallocating buffers... [0.014s] Loading trace points... [0.031s] Sorting trace points... [1.116s] Computing alignments... [31.738s] Deallocating buffers... [0.014s] Loading trace points... [0.058s] Sorting trace points... [1.166s] Computing alignments... [31.614s] Deallocating buffers... [0.013s] Loading trace points... [0.052s] Sorting trace points... [0.878s] Computing alignments... [31.111s] Deallocating buffers... [0.015s] Loading trace points... [0.133s] Sorting trace points... [1.155s] Computing alignments... [30.787s] Deallocating buffers... [0.016s] Loading trace points... [0.07s] Sorting trace points... [1.144s] Computing alignments... [30.341s] Deallocating buffers... [0.016s] Loading trace points... [0.072s] Sorting trace points... [1.045s] Computing alignments... [30.651s] Deallocating buffers... [0.015s] Loading trace points... [0.123s] Sorting trace points... [1.188s] Computing alignments... [31.315s] Deallocating buffers... [0.013s] Loading trace points... [0.079s] Sorting trace points... [1.176s] Computing alignments... [31.196s] Deallocating buffers... [0.016s] Loading trace points... [0.092s] Sorting trace points... [1.203s] Computing alignments... [31.3s] Deallocating buffers... [0.013s] Loading trace points... [0.026s] Sorting trace points... [0.877s] Computing alignments... [31.359s] Deallocating buffers... [0.015s] Loading trace points... [0s] Sorting trace points... [1.045s] Computing alignments... [31.439s] Deallocating buffers... [0.014s] Loading trace points... [0.054s] Sorting trace points... [1.194s] Computing alignments... [31.524s] Deallocating buffers... [0.013s] Loading trace points... [0s] Sorting trace points... [1.16s] Computing alignments... [30.967s] Deallocating buffers... [0.017s] Loading trace points... [0s] [528.845s] Deallocating reference... [0.056s] Loading reference sequences... [29.723s] Masking reference... [32.117s] Initializing dictionary... [0.077s] Initializing temporary storage... [0.008s] Building reference histograms... [32.883s] Allocating buffers... [0.001s] Processing query block 1, reference block 8/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.485s] Building query seed array... [1.987s] Computing hash join... [6.924s] Masking low complexity seeds... [0.536s] Searching alignments... [75.855s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.824s] Building query seed array... [2.805s] Computing hash join... [7.215s] Masking low complexity seeds... [0.288s] Searching alignments... [50.493s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.906s] Building query seed array... [2.62s] Computing hash join... [6.768s] Masking low complexity seeds... [0.234s] Searching alignments... [42.147s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.381s] Building query seed array... [2.092s] Computing hash join... [6.934s] Masking low complexity seeds... [0.309s] Searching alignments... [37.819s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.336s] Building query seed array... [2.007s] Computing hash join... [6.671s] Masking low complexity seeds... [0.274s] Searching alignments... [38.352s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.815s] Building query seed array... [2.304s] Computing hash join... [7.106s] Masking low complexity seeds... [0.204s] Searching alignments... [30.368s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.424s] Building query seed array... [2.538s] Computing hash join... [7.124s] Masking low complexity seeds... [0.294s] Searching alignments... [34.228s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.316s] Building query seed array... [1.909s] Computing hash join... [6.904s] Masking low complexity seeds... [0.333s] Searching alignments... [28.463s] Deallocating memory... [0s] Deallocating buffers... [1.562s] Clearing query masking... [1.642s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [6.519s] Sorting trace points... [1.298s] Computing alignments... [31.984s] Deallocating buffers... [0.014s] Loading trace points... [0.045s] Sorting trace points... [1.144s] Computing alignments... [31.818s] Deallocating buffers... [0.014s] Loading trace points... [0.1s] Sorting trace points... [0.97s] Computing alignments... [32.164s] Deallocating buffers... [0.015s] Loading trace points... [0.053s] Sorting trace points... [1.231s] Computing alignments... [31.445s] Deallocating buffers... [0.017s] Loading trace points... [0.101s] Sorting trace points... [0.922s] Computing alignments... [31.294s] Deallocating buffers... [0.014s] Loading trace points... [0.092s] Sorting trace points... [1.19s] Computing alignments... [30.829s] Deallocating buffers... [0.013s] Loading trace points... [0.136s] Sorting trace points... [1.007s] Computing alignments... [30.574s] Deallocating buffers... [0.016s] Loading trace points... [0.075s] Sorting trace points... [1.12s] Computing alignments... [30.139s] Deallocating buffers... [0.013s] Loading trace points... [0.087s] Sorting trace points... [1.162s] Computing alignments... [30.41s] Deallocating buffers... [0.013s] Loading trace points... [0.184s] Sorting trace points... [0.926s] Computing alignments... [31.101s] Deallocating buffers... [0.015s] Loading trace points... [0.359s] Sorting trace points... [1.183s] Computing alignments... [31.105s] Deallocating buffers... [0.017s] Loading trace points... [0.09s] Sorting trace points... [1.149s] Computing alignments... [31.402s] Deallocating buffers... [0.014s] Loading trace points... [0.051s] Sorting trace points... [1.271s] Computing alignments... [31.19s] Deallocating buffers... [0.017s] Loading trace points... [0.001s] Sorting trace points... [0.948s] Computing alignments... [31.358s] Deallocating buffers... [0.015s] Loading trace points... [0s] Sorting trace points... [1.162s] Computing alignments... [31.502s] Deallocating buffers... [0.013s] Loading trace points... [0s] Sorting trace points... [1.18s] Computing alignments... [31.009s] Deallocating buffers... [0.013s] Loading trace points... [0s] [525.611s] Deallocating reference... [0.06s] Loading reference sequences... [33.085s] Masking reference... [31.695s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.006s] Building reference histograms... [32.572s] Allocating buffers... [0s] Processing query block 1, reference block 9/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.532s] Building query seed array... [1.974s] Computing hash join... [6.311s] Masking low complexity seeds... [0.434s] Searching alignments... [76.097s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 1/2, index chunk 2/4. Building reference seed array... [13.228s] Building query seed array... [2.688s] Computing hash join... [6.269s] Masking low complexity seeds... [0.223s] Searching alignments... [50.005s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.915s] Building query seed array... [2.635s] Computing hash join... [6.175s] Masking low complexity seeds... [0.228s] Searching alignments... [41.246s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.985s] Building query seed array... [2.151s] Computing hash join... [6.168s] Masking low complexity seeds... [0.259s] Searching alignments... [37.823s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.405s] Building query seed array... [1.865s] Computing hash join... [5.733s] Masking low complexity seeds... [0.271s] Searching alignments... [37.936s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.758s] Building query seed array... [2.272s] Computing hash join... [5.935s] Masking low complexity seeds... [0.244s] Searching alignments... [31.416s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.709s] Building query seed array... [2.384s] Computing hash join... [5.846s] Masking low complexity seeds... [0.218s] Searching alignments... [34.857s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.343s] Building query seed array... [1.929s] Computing hash join... [5.843s] Masking low complexity seeds... [0.211s] Searching alignments... [29.123s] Deallocating memory... [0s] Deallocating buffers... [2.117s] Clearing query masking... [1.476s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [6.728s] Sorting trace points... [1.3s] Computing alignments... [32.158s] Deallocating buffers... [0.013s] Loading trace points... [0.767s] Sorting trace points... [1.007s] Computing alignments... [32.331s] Deallocating buffers... [0.023s] Loading trace points... [0.125s] Sorting trace points... [1.052s] Computing alignments... [32.326s] Deallocating buffers... [0.016s] Loading trace points... [0.001s] Sorting trace points... [1.189s] Computing alignments... [31.776s] Deallocating buffers... [0.017s] Loading trace points... [0.076s] Sorting trace points... [0.881s] Computing alignments... [31.515s] Deallocating buffers... [0.015s] Loading trace points... [0.075s] Sorting trace points... [1.179s] Computing alignments... [31.063s] Deallocating buffers... [0.014s] Loading trace points... [0.068s] Sorting trace points... [1.161s] Computing alignments... [30.784s] Deallocating buffers... [0.013s] Loading trace points... [0.104s] Sorting trace points... [0.998s] Computing alignments... [30.401s] Deallocating buffers... [0.015s] Loading trace points... [0.066s] Sorting trace points... [1.177s] Computing alignments... [30.601s] Deallocating buffers... [0.013s] Loading trace points... [0.089s] Sorting trace points... [1.173s] Computing alignments... [31.412s] Deallocating buffers... [0.017s] Loading trace points... [0.097s] Sorting trace points... [1.189s] Computing alignments... [31.239s] Deallocating buffers... [0.013s] Loading trace points... [0.044s] Sorting trace points... [0.991s] Computing alignments... [31.487s] Deallocating buffers... [0.024s] Loading trace points... [0.003s] Sorting trace points... [1.255s] Computing alignments... [31.294s] Deallocating buffers... [0.016s] Loading trace points... [0.12s] Sorting trace points... [0.861s] Computing alignments... [31.392s] Deallocating buffers... [0.015s] Loading trace points... [0.074s] Sorting trace points... [1.196s] Computing alignments... [31.38s] Deallocating buffers... [0.013s] Loading trace points... [0s] Sorting trace points... [0.901s] Computing alignments... [30.956s] Deallocating buffers... [0.015s] Loading trace points... [0s] [528.492s] Deallocating reference... [0.056s] Loading reference sequences... [33.158s] Masking reference... [31.142s] Initializing dictionary... [0.077s] Initializing temporary storage... [0.007s] Building reference histograms... [32.69s] Allocating buffers... [0s] Processing query block 1, reference block 10/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.558s] Building query seed array... [1.986s] Computing hash join... [6.41s] Masking low complexity seeds... [0.224s] Searching alignments... [74.544s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 1/2, index chunk 2/4. Building reference seed array... [13.318s] Building query seed array... [2.81s] Computing hash join... [6.151s] Masking low complexity seeds... [0.248s] Searching alignments... [50.277s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.861s] Building query seed array... [2.56s] Computing hash join... [5.971s] Masking low complexity seeds... [0.233s] Searching alignments... [43.242s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.616s] Building query seed array... [2.093s] Computing hash join... [6.263s] Masking low complexity seeds... [0.239s] Searching alignments... [38.997s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.217s] Building query seed array... [1.827s] Computing hash join... [6.204s] Masking low complexity seeds... [0.244s] Searching alignments... [37.555s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.946s] Building query seed array... [2.364s] Computing hash join... [6.435s] Masking low complexity seeds... [0.231s] Searching alignments... [30.688s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.891s] Building query seed array... [2.336s] Computing hash join... [6.129s] Masking low complexity seeds... [0.258s] Searching alignments... [35.172s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.415s] Building query seed array... [1.858s] Computing hash join... [5.921s] Masking low complexity seeds... [0.205s] Searching alignments... [29.654s] Deallocating memory... [0s] Deallocating buffers... [1.975s] Clearing query masking... [1.488s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [6.47s] Sorting trace points... [1.328s] Computing alignments... [31.987s] Deallocating buffers... [0.015s] Loading trace points... [0.073s] Sorting trace points... [1.287s] Computing alignments... [31.987s] Deallocating buffers... [0.151s] Loading trace points... [0.043s] Sorting trace points... [1.283s] Computing alignments... [32.049s] Deallocating buffers... [0.017s] Loading trace points... [0s] Sorting trace points... [1.229s] Computing alignments... [31.514s] Deallocating buffers... [0.016s] Loading trace points... [0.072s] Sorting trace points... [1.202s] Computing alignments... [31.322s] Deallocating buffers... [0.013s] Loading trace points... [0.082s] Sorting trace points... [1.183s] Computing alignments... [30.976s] Deallocating buffers... [0.013s] Loading trace points... [0.086s] Sorting trace points... [1.186s] Computing alignments... [30.642s] Deallocating buffers... [0.013s] Loading trace points... [0.073s] Sorting trace points... [1.139s] Computing alignments... [30.097s] Deallocating buffers... [0.012s] Loading trace points... [0.071s] Sorting trace points... [1.16s] Computing alignments... [30.421s] Deallocating buffers... [0.013s] Loading trace points... [0.075s] Sorting trace points... [1.17s] Computing alignments... [31.137s] Deallocating buffers... [0.013s] Loading trace points... [0.062s] Sorting trace points... [1.2s] Computing alignments... [30.969s] Deallocating buffers... [0.013s] Loading trace points... [0.142s] Sorting trace points... [0.869s] Computing alignments... [31.309s] Deallocating buffers... [0.023s] Loading trace points... [0.001s] Sorting trace points... [0.959s] Computing alignments... [31.042s] Deallocating buffers... [0.015s] Loading trace points... [0.091s] Sorting trace points... [1.197s] Computing alignments... [31.257s] Deallocating buffers... [0.014s] Loading trace points... [0.09s] Sorting trace points... [0.959s] Computing alignments... [31.409s] Deallocating buffers... [0.016s] Loading trace points... [0s] Sorting trace points... [1.119s] Computing alignments... [30.864s] Deallocating buffers... [0.016s] Loading trace points... [0s] [525.422s] Deallocating reference... [0.061s] Loading reference sequences... [29.403s] Masking reference... [30.879s] Initializing dictionary... [0.077s] Initializing temporary storage... [0.006s] Building reference histograms... [33.068s] Allocating buffers... [0.001s] Processing query block 1, reference block 11/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.332s] Building query seed array... [1.981s] Computing hash join... [6.594s] Masking low complexity seeds... [0.377s] Searching alignments... [75.649s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 1/2, index chunk 2/4. Building reference seed array... [13.103s] Building query seed array... [2.784s] Computing hash join... [6.669s] Masking low complexity seeds... [0.263s] Searching alignments... [49.527s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.462s] Building query seed array... [2.656s] Computing hash join... [6.433s] Masking low complexity seeds... [0.276s] Searching alignments... [42.366s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.92s] Building query seed array... [2.145s] Computing hash join... [7.001s] Masking low complexity seeds... [0.252s] Searching alignments... [38.409s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.634s] Building query seed array... [1.861s] Computing hash join... [6.802s] Masking low complexity seeds... [0.208s] Searching alignments... [38.758s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.689s] Building query seed array... [2.144s] Computing hash join... [6.905s] Masking low complexity seeds... [0.325s] Searching alignments... [31.894s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.805s] Building query seed array... [2.239s] Computing hash join... [7.035s] Masking low complexity seeds... [0.328s] Searching alignments... [33.452s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.355s] Building query seed array... [1.9s] Computing hash join... [6.999s] Masking low complexity seeds... [0.29s] Searching alignments... [29.293s] Deallocating memory... [0s] Deallocating buffers... [2.059s] Clearing query masking... [1.534s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [6.55s] Sorting trace points... [1.289s] Computing alignments... [32.413s] Deallocating buffers... [0.018s] Loading trace points... [0.065s] Sorting trace points... [1.233s] Computing alignments... [32.314s] Deallocating buffers... [0.028s] Loading trace points... [0.07s] Sorting trace points... [1.279s] Computing alignments... [32.416s] Deallocating buffers... [0.017s] Loading trace points... [0.089s] Sorting trace points... [1.188s] Computing alignments... [31.72s] Deallocating buffers... [0.013s] Loading trace points... [0.061s] Sorting trace points... [1.211s] Computing alignments... [31.482s] Deallocating buffers... [0.014s] Loading trace points... [0s] Sorting trace points... [0.86s] Computing alignments... [31.019s] Deallocating buffers... [0.015s] Loading trace points... [0.058s] Sorting trace points... [1.145s] Computing alignments... [30.756s] Deallocating buffers... [0.013s] Loading trace points... [0.067s] Sorting trace points... [1.143s] Computing alignments... [30.285s] Deallocating buffers... [0.013s] Loading trace points... [0.051s] Sorting trace points... [1.143s] Computing alignments... [30.424s] Deallocating buffers... [0.016s] Loading trace points... [0.051s] Sorting trace points... [1.255s] Computing alignments... [31.198s] Deallocating buffers... [0.128s] Loading trace points... [0.119s] Sorting trace points... [1.223s] Computing alignments... [31.044s] Deallocating buffers... [0.016s] Loading trace points... [0.089s] Sorting trace points... [1.26s] Computing alignments... [31.39s] Deallocating buffers... [0.158s] Loading trace points... [0.109s] Sorting trace points... [0.967s] Computing alignments... [31.14s] Deallocating buffers... [0.015s] Loading trace points... [0.088s] Sorting trace points... [1.183s] Computing alignments... [31.192s] Deallocating buffers... [0.013s] Loading trace points... [0.083s] Sorting trace points... [1.188s] Computing alignments... [31.288s] Deallocating buffers... [0.017s] Loading trace points... [0s] Sorting trace points... [1.166s] Computing alignments... [30.919s] Deallocating buffers... [0.013s] Loading trace points... [0s] [527.983s] Deallocating reference... [0.058s] Loading reference sequences... [30.358s] Masking reference... [32.126s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.006s] Building reference histograms... [32.032s] Allocating buffers... [0s] Processing query block 1, reference block 12/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.015s] Building query seed array... [1.96s] Computing hash join... [7.081s] Masking low complexity seeds... [0.221s] Searching alignments... [77.256s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.844s] Building query seed array... [2.837s] Computing hash join... [6.888s] Masking low complexity seeds... [0.235s] Searching alignments... [49.318s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.842s] Building query seed array... [2.633s] Computing hash join... [6.433s] Masking low complexity seeds... [0.261s] Searching alignments... [44.756s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.619s] Building query seed array... [2.132s] Computing hash join... [6.906s] Masking low complexity seeds... [0.219s] Searching alignments... [39.296s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.486s] Building query seed array... [1.997s] Computing hash join... [6.822s] Masking low complexity seeds... [0.216s] Searching alignments... [39.132s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 2/2, index chunk 2/4. Building reference seed array... [13.033s] Building query seed array... [2.212s] Computing hash join... [7.034s] Masking low complexity seeds... [0.325s] Searching alignments... [30.81s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.676s] Building query seed array... [2.264s] Computing hash join... [7.035s] Masking low complexity seeds... [0.282s] Searching alignments... [34.357s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.791s] Building query seed array... [1.99s] Computing hash join... [6.696s] Masking low complexity seeds... [0.227s] Searching alignments... [29.376s] Deallocating memory... [0s] Deallocating buffers... [1.875s] Clearing query masking... [1.57s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [6.826s] Sorting trace points... [1.205s] Computing alignments... [31.705s] Deallocating buffers... [0.015s] Loading trace points... [0.135s] Sorting trace points... [1.197s] Computing alignments... [31.807s] Deallocating buffers... [0.024s] Loading trace points... [0.083s] Sorting trace points... [1.272s] Computing alignments... [31.9s] Deallocating buffers... [0.017s] Loading trace points... [0.034s] Sorting trace points... [1.072s] Computing alignments... [31.155s] Deallocating buffers... [0.016s] Loading trace points... [0.08s] Sorting trace points... [1.229s] Computing alignments... [31.071s] Deallocating buffers... [0.013s] Loading trace points... [0.068s] Sorting trace points... [1.173s] Computing alignments... [30.728s] Deallocating buffers... [0.013s] Loading trace points... [0.088s] Sorting trace points... [1.163s] Computing alignments... [30.402s] Deallocating buffers... [0.013s] Loading trace points... [0.587s] Sorting trace points... [1.288s] Computing alignments... [30.132s] Deallocating buffers... [0.142s] Loading trace points... [0.067s] Sorting trace points... [1.205s] Computing alignments... [30.388s] Deallocating buffers... [0.013s] Loading trace points... [0.093s] Sorting trace points... [1.183s] Computing alignments... [31.169s] Deallocating buffers... [0.013s] Loading trace points... [0.08s] Sorting trace points... [1.048s] Computing alignments... [31.007s] Deallocating buffers... [0.014s] Loading trace points... [0.071s] Sorting trace points... [1.236s] Computing alignments... [31.48s] Deallocating buffers... [0.02s] Loading trace points... [0.039s] Sorting trace points... [1.229s] Computing alignments... [31.344s] Deallocating buffers... [0.013s] Loading trace points... [0s] Sorting trace points... [1.32s] Computing alignments... [31.387s] Deallocating buffers... [0.086s] Loading trace points... [0.106s] Sorting trace points... [1.207s] Computing alignments... [31.406s] Deallocating buffers... [0.013s] Loading trace points... [0s] Sorting trace points... [0.857s] Computing alignments... [31.002s] Deallocating buffers... [0.015s] Loading trace points... [0s] [526.037s] Deallocating reference... [0.062s] Loading reference sequences... [32.729s] Masking reference... [30.92s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.006s] Building reference histograms... [33.393s] Allocating buffers... [0s] Processing query block 1, reference block 13/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.213s] Building query seed array... [1.942s] Computing hash join... [7.417s] Masking low complexity seeds... [0.216s] Searching alignments... [75.417s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 1/2, index chunk 2/4. Building reference seed array... [13.081s] Building query seed array... [2.997s] Computing hash join... [7.019s] Masking low complexity seeds... [0.232s] Searching alignments... [49.101s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.66s] Building query seed array... [2.495s] Computing hash join... [6.807s] Masking low complexity seeds... [0.272s] Searching alignments... [43.392s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.515s] Building query seed array... [2.227s] Computing hash join... [6.894s] Masking low complexity seeds... [0.25s] Searching alignments... [39.291s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.365s] Building query seed array... [2.007s] Computing hash join... [6.575s] Masking low complexity seeds... [0.219s] Searching alignments... [38.611s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.768s] Building query seed array... [2.215s] Computing hash join... [7.189s] Masking low complexity seeds... [0.217s] Searching alignments... [31.088s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.593s] Building query seed array... [2.292s] Computing hash join... [7.053s] Masking low complexity seeds... [0.221s] Searching alignments... [33.96s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.241s] Building query seed array... [1.888s] Computing hash join... [7.013s] Masking low complexity seeds... [0.218s] Searching alignments... [28.921s] Deallocating memory... [0s] Deallocating buffers... [1.808s] Clearing query masking... [1.561s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [6.784s] Sorting trace points... [1.238s] Computing alignments... [31.963s] Deallocating buffers... [0.015s] Loading trace points... [0.058s] Sorting trace points... [1.205s] Computing alignments... [32.013s] Deallocating buffers... [0.021s] Loading trace points... [0.07s] Sorting trace points... [1.275s] Computing alignments... [32.075s] Deallocating buffers... [0.017s] Loading trace points... [0.097s] Sorting trace points... [1.2s] Computing alignments... [31.36s] Deallocating buffers... [0.017s] Loading trace points... [0.047s] Sorting trace points... [1.177s] Computing alignments... [31.207s] Deallocating buffers... [0.014s] Loading trace points... [0.002s] Sorting trace points... [1.202s] Computing alignments... [30.782s] Deallocating buffers... [0.016s] Loading trace points... [0.05s] Sorting trace points... [1.152s] Computing alignments... [30.452s] Deallocating buffers... [0.013s] Loading trace points... [0.093s] Sorting trace points... [1.143s] Computing alignments... [30.095s] Deallocating buffers... [0.013s] Loading trace points... [0.083s] Sorting trace points... [1.249s] Computing alignments... [30.398s] Deallocating buffers... [0.179s] Loading trace points... [0.654s] Sorting trace points... [1.036s] Computing alignments... [31.142s] Deallocating buffers... [0.018s] Loading trace points... [0.096s] Sorting trace points... [1.192s] Computing alignments... [30.911s] Deallocating buffers... [0.013s] Loading trace points... [0.065s] Sorting trace points... [1.186s] Computing alignments... [31.343s] Deallocating buffers... [0.024s] Loading trace points... [0.151s] Sorting trace points... [0.931s] Computing alignments... [31.182s] Deallocating buffers... [0.015s] Loading trace points... [0.101s] Sorting trace points... [1.005s] Computing alignments... [31.205s] Deallocating buffers... [0.014s] Loading trace points... [0.076s] Sorting trace points... [1.189s] Computing alignments... [31.333s] Deallocating buffers... [0.016s] Loading trace points... [0s] Sorting trace points... [1.166s] Computing alignments... [30.878s] Deallocating buffers... [0.014s] Loading trace points... [0s] [526.037s] Deallocating reference... [0.057s] Loading reference sequences... [25.45s] Masking reference... [26.028s] Initializing dictionary... [0.063s] Initializing temporary storage... [0.006s] Building reference histograms... [26.443s] Allocating buffers... [0s] Processing query block 1, reference block 14/14, shape 1/2, index chunk 1/4. Building reference seed array... [8.639s] Building query seed array... [1.962s] Computing hash join... [4.741s] Masking low complexity seeds... [0.24s] Searching alignments... [62.084s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 1/2, index chunk 2/4. Building reference seed array... [10.786s] Building query seed array... [2.783s] Computing hash join... [4.455s] Masking low complexity seeds... [0.209s] Searching alignments... [42.16s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 1/2, index chunk 3/4. Building reference seed array... [11.223s] Building query seed array... [2.552s] Computing hash join... [5.052s] Masking low complexity seeds... [0.315s] Searching alignments... [34.902s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 1/2, index chunk 4/4. Building reference seed array... [8.558s] Building query seed array... [2.164s] Computing hash join... [4.683s] Masking low complexity seeds... [0.209s] Searching alignments... [31.047s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 2/2, index chunk 1/4. Building reference seed array... [8.806s] Building query seed array... [1.998s] Computing hash join... [4.58s] Masking low complexity seeds... [0.207s] Searching alignments... [30.369s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 2/2, index chunk 2/4. Building reference seed array... [10.383s] Building query seed array... [2.267s] Computing hash join... [4.633s] Masking low complexity seeds... [0.201s] Searching alignments... [24.901s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 2/2, index chunk 3/4. Building reference seed array... [11.725s] Building query seed array... [2.337s] Computing hash join... [4.932s] Masking low complexity seeds... [0.206s] Searching alignments... [27.641s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 2/2, index chunk 4/4. Building reference seed array... [8.671s] Building query seed array... [1.978s] Computing hash join... [4.791s] Masking low complexity seeds... [0.236s] Searching alignments... [23.379s] Deallocating memory... [0s] Deallocating buffers... [1.649s] Clearing query masking... [1.475s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [11.601s] Sorting trace points... [1.994s] Computing alignments... [50.468s] Deallocating buffers... [0.028s] Loading trace points... [0.034s] Sorting trace points... [1.737s] Computing alignments... [50.366s] Deallocating buffers... [0.024s] Loading trace points... [0.103s] Sorting trace points... [1.405s] Computing alignments... [49.492s] Deallocating buffers... [0.024s] Loading trace points... [0.092s] Sorting trace points... [1.639s] Computing alignments... [48.411s] Deallocating buffers... [0.024s] Loading trace points... [0.158s] Sorting trace points... [1.565s] Computing alignments... [48.946s] Deallocating buffers... [0.024s] Loading trace points... [0.081s] Sorting trace points... [1.984s] Computing alignments... [49.535s] Deallocating buffers... [0.021s] Loading trace points... [0.118s] Sorting trace points... [2.141s] Computing alignments... [49.849s] Deallocating buffers... [0.286s] Loading trace points... [0s] Sorting trace points... [1.995s] Computing alignments... [49.37s] Deallocating buffers... [0.021s] Loading trace points... [0s] [423.65s] Deallocating reference... [0.053s] Loading reference sequences... [0.095s] Deallocating buffers... [0s] Joining output blocks... Joining output blocks... [2127.7s] [2127.7s] Deallocating queries... [0.068s] Loading query sequences... [0s] Closing the input file... [0s] Closing the output file... Loading dictionary... [3.534s] [4.577s] Closing the database... [0s] Cleaning up... [0s] Total time = 17847.2s Reported 2356276650 pairwise alignments, 2356276650 HSPs. 12482406 queries aligned. DIAMOND BLASTx on /gscratch/srlab/sam/data/P_verrucosa/RNAseq/C18_R1.fastp-trim.20230215.fq.gz complete: C18_R1.blastx.meganized.daa Now MEGANizing C18_R1.blastx.meganized.daa Version MEGAN Community Edition (version 6.22.0, built 19 Feb 2022) Author(s) Daniel H. Huson Copyright (C) 2022 Daniel H. Huson. This program comes with ABSOLUTELY NO WARRANTY. Java version: 17.0.2 Functional classifications to use: EC, EGGNOG, GTDB, INTERPRO2GO, SEED Loading ncbi.map: 2,396,736 Loading ncbi.tre: 2,396,740 Loading ec.map: 8,200 Loading ec.tre: 8,204 Loading eggnog.map: 30,875 Loading eggnog.tre: 30,986 Loading gtdb.map: 240,103 Loading gtdb.tre: 240,107 Loading interpro2go.map: 14,242 Loading interpro2go.tre: 28,907 Loading seed.map: 961 Loading seed.tre: 962 Meganizing: C18_R1.blastx.meganized.daa Meganizing init Annotating DAA file using FAST mode (accession database and first accession per line) Annotating references 10% 20% 30% 40% 50% 60% 70% 100% (487.4s) Writing 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (1.4s) Binning reads Initializing... Initializing binning... Using 'Naive LCA' algorithm for binning: Taxonomy Using Best-Hit algorithm for binning: SEED Using Best-Hit algorithm for binning: EGGNOG Using 'Naive LCA' algorithm for binning: GTDB Using Best-Hit algorithm for binning: EC Using Best-Hit algorithm for binning: INTERPRO2GO Binning reads... Binning reads Analyzing alignments 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (4,474.0s) Total reads: 12,482,406 With hits: 12,482,406 Alignments: 2,341,753,112 Assig. Taxonomy: 11,491,024 Assig. SEED: 98,189 Assig. EGGNOG: 42,418 Assig. GTDB: 345,227 Assig. EC: 2,050,969 Assig. INTERPRO2GO: 1,126,935 MinSupport set to: 6241 Binning reads Applying min-support & disabled filter to Taxonomy... 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (0.5s) Min-supp. changes: 3,540 Binning reads Applying min-support & disabled filter to GTDB... 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (8.7s) Min-supp. changes: 2,698 Binning reads Writing classification tables 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (31.3s) Binning reads Syncing 100% (0.4s) Class. Taxonomy: 74 Class. SEED: 464 Class. EGGNOG: 1,647 Class. GTDB: 17 Class. EC: 2,261 Class. INTERPRO2GO: 7,770 Total time: 5,012s Peak memory: 33.8 of 195.3G MEGANization of C18_R1.blastx.meganized.daa completed. Generating MD5 checksum for /gscratch/srlab/sam/data/P_verrucosa/RNAseq/C18_R2.fastp-trim.20230215.fq.gz... afe6d73006cb91783c83d76fb4cd9fad /gscratch/srlab/sam/data/P_verrucosa/RNAseq/C18_R2.fastp-trim.20230215.fq.gz Running DIAMOND BLASTx on /gscratch/srlab/sam/data/P_verrucosa/RNAseq/C18_R2.fastp-trim.20230215.fq.gz. diamond v2.1.1.155 (C) Max Planck Society for the Advancement of Science Documentation, support and updates available at http://www.diamondsearch.org Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021) #CPU threads: 40 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: Percentage range of top alignment score to report hits: 5 Opening the database... [0.535s] Database: /gscratch/srlab/blastdbs/20230215-ncbi-nr/20230215-ncbi-nr.dmnd (type: Diamond database, sequences: 526308523, letters: 207134680681) Block size = 15000000000 Opening the input file... [0.785s] Opening the output file... [0s] Loading query sequences... [70.11s] Masking queries... [17.781s] Algorithm: Double-indexed Building query histograms... [17.614s] Loading reference sequences... [29.758s] Masking reference... [30.916s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.008s] Building reference histograms... [32.081s] Allocating buffers... [0s] Processing query block 1, reference block 1/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.315s] Building query seed array... [2.01s] Computing hash join... [6.25s] Masking low complexity seeds... [0.255s] Searching alignments... [76.059s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.963s] Building query seed array... [2.617s] Computing hash join... [6.173s] Masking low complexity seeds... [0.329s] Searching alignments... [56.425s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.449s] Building query seed array... [2.641s] Computing hash join... [6.379s] Masking low complexity seeds... [0.271s] Searching alignments... [42.117s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.356s] Building query seed array... [2.191s] Computing hash join... [5.93s] Masking low complexity seeds... [0.259s] Searching alignments... [38.275s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.257s] Building query seed array... [1.882s] Computing hash join... [5.679s] Masking low complexity seeds... [0.244s] Searching alignments... [41.504s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.9s] Building query seed array... [2.224s] Computing hash join... [5.778s] Masking low complexity seeds... [0.261s] Searching alignments... [30.772s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.339s] Building query seed array... [2.351s] Computing hash join... [5.706s] Masking low complexity seeds... [0.256s] Searching alignments... [34.997s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.814s] Building query seed array... [1.937s] Computing hash join... [5.785s] Masking low complexity seeds... [0.236s] Searching alignments... [29.518s] Deallocating memory... [0s] Deallocating buffers... [1.569s] Clearing query masking... [1.583s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [7.07s] Sorting trace points... [1.149s] Computing alignments... [32.116s] Deallocating buffers... [0.015s] Loading trace points... [0.052s] Sorting trace points... [1.171s] Computing alignments... [32.133s] Deallocating buffers... [0.018s] Loading trace points... [0.095s] Sorting trace points... [1.057s] Computing alignments... [32.415s] Deallocating buffers... [0.015s] Loading trace points... [0.051s] Sorting trace points... [1.193s] Computing alignments... [31.523s] Deallocating buffers... [0.014s] Loading trace points... [0.05s] Sorting trace points... [1.2s] Computing alignments... [31.587s] Deallocating buffers... [0.016s] Loading trace points... [0.04s] Sorting trace points... [1.184s] Computing alignments... [30.868s] Deallocating buffers... [0.016s] Loading trace points... [0.057s] Sorting trace points... [1.157s] Computing alignments... [30.874s] Deallocating buffers... [0.016s] Loading trace points... [0.11s] Sorting trace points... [1.169s] Computing alignments... [30.226s] Deallocating buffers... [0.013s] Loading trace points... [0.068s] Sorting trace points... [1.158s] Computing alignments... [31.241s] Deallocating buffers... [0.013s] Loading trace points... [0.079s] Sorting trace points... [1.251s] Computing alignments... [32.106s] Deallocating buffers... [0.017s] Loading trace points... [0.079s] Sorting trace points... [1.27s] Computing alignments... [32.213s] Deallocating buffers... [0.014s] Loading trace points... [0s] Sorting trace points... [1.084s] Computing alignments... [31.948s] Deallocating buffers... [0.016s] Loading trace points... [0.075s] Sorting trace points... [1.22s] Computing alignments... [32.074s] Deallocating buffers... [0.017s] Loading trace points... [0.064s] Sorting trace points... [1.056s] Computing alignments... [32.184s] Deallocating buffers... [0.014s] Loading trace points... [0.063s] Sorting trace points... [1.21s] Computing alignments... [32.436s] Deallocating buffers... [0.014s] Loading trace points... [0s] Sorting trace points... [1.079s] Computing alignments... [31.989s] Deallocating buffers... [0.014s] Loading trace points... [0s] [534.929s] Deallocating reference... [0.078s] Loading reference sequences... [32.053s] Masking reference... [31.03s] Initializing dictionary... [0.079s] Initializing temporary storage... [0.008s] Building reference histograms... [32.473s] Allocating buffers... [0s] Processing query block 1, reference block 2/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.62s] Building query seed array... [1.993s] Computing hash join... [6.42s] Masking low complexity seeds... [0.249s] Searching alignments... [73.148s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.733s] Building query seed array... [2.88s] Computing hash join... [6.593s] Masking low complexity seeds... [0.253s] Searching alignments... [48.704s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.469s] Building query seed array... [2.544s] Computing hash join... [6.355s] Masking low complexity seeds... [0.255s] Searching alignments... [41.155s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.248s] Building query seed array... [2.1s] Computing hash join... [6.554s] Masking low complexity seeds... [0.252s] Searching alignments... [37.896s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.094s] Building query seed array... [1.855s] Computing hash join... [6.424s] Masking low complexity seeds... [0.234s] Searching alignments... [40.66s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.733s] Building query seed array... [2.139s] Computing hash join... [6.445s] Masking low complexity seeds... [0.356s] Searching alignments... [30.911s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.36s] Building query seed array... [2.35s] Computing hash join... [6.612s] Masking low complexity seeds... [0.352s] Searching alignments... [35.224s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.119s] Building query seed array... [1.871s] Computing hash join... [6.676s] Masking low complexity seeds... [0.335s] Searching alignments... [29.559s] Deallocating memory... [0s] Deallocating buffers... [1.195s] Clearing query masking... [1.545s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [6.454s] Sorting trace points... [1.283s] Computing alignments... [31.777s] Deallocating buffers... [0.014s] Loading trace points... [0.161s] Sorting trace points... [1.001s] Computing alignments... [31.905s] Deallocating buffers... [0.014s] Loading trace points... [0.138s] Sorting trace points... [1.216s] Computing alignments... [32.412s] Deallocating buffers... [0.015s] Loading trace points... [0.002s] Sorting trace points... [1.024s] Computing alignments... [31.788s] Deallocating buffers... [0.014s] Loading trace points... [0.001s] Sorting trace points... [0.929s] Computing alignments... [31.461s] Deallocating buffers... [0.014s] Loading trace points... [0.001s] Sorting trace points... [1.15s] Computing alignments... [30.687s] Deallocating buffers... [0.016s] Loading trace points... [0.115s] Sorting trace points... [0.939s] Computing alignments... [30.826s] Deallocating buffers... [0.014s] Loading trace points... [0.051s] Sorting trace points... [1.097s] Computing alignments... [30.036s] Deallocating buffers... [0.016s] Loading trace points... [0.067s] Sorting trace points... [1.154s] Computing alignments... [31.027s] Deallocating buffers... [0.013s] Loading trace points... [0.098s] Sorting trace points... [1.07s] Computing alignments... [31.805s] Deallocating buffers... [0.015s] Loading trace points... [0.097s] Sorting trace points... [1.194s] Computing alignments... [31.942s] Deallocating buffers... [0.014s] Loading trace points... [0.068s] Sorting trace points... [0.873s] Computing alignments... [31.946s] Deallocating buffers... [0.015s] Loading trace points... [0.082s] Sorting trace points... [1.232s] Computing alignments... [32.012s] Deallocating buffers... [0.013s] Loading trace points... [0.098s] Sorting trace points... [0.9s] Computing alignments... [31.91s] Deallocating buffers... [0.015s] Loading trace points... [0.059s] Sorting trace points... [1.284s] Computing alignments... [32.382s] Deallocating buffers... [0.021s] Loading trace points... [0s] Sorting trace points... [1.242s] Computing alignments... [31.997s] Deallocating buffers... [0.017s] Loading trace points... [0s] [531.496s] Deallocating reference... [0.064s] Loading reference sequences... [29.523s] Masking reference... [30.921s] Initializing dictionary... [0.077s] Initializing temporary storage... [0.008s] Building reference histograms... [32.911s] Allocating buffers... [0s] Processing query block 1, reference block 3/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.384s] Building query seed array... [1.995s] Computing hash join... [6.351s] Masking low complexity seeds... [0.442s] Searching alignments... [76.497s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.951s] Building query seed array... [2.753s] Computing hash join... [5.883s] Masking low complexity seeds... [0.263s] Searching alignments... [51.013s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.935s] Building query seed array... [2.644s] Computing hash join... [5.885s] Masking low complexity seeds... [0.28s] Searching alignments... [43.134s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.479s] Building query seed array... [2.161s] Computing hash join... [6.156s] Masking low complexity seeds... [0.324s] Searching alignments... [39.048s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.591s] Building query seed array... [1.922s] Computing hash join... [5.818s] Masking low complexity seeds... [0.245s] Searching alignments... [41.779s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.647s] Building query seed array... [2.334s] Computing hash join... [5.449s] Masking low complexity seeds... [0.248s] Searching alignments... [31.556s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 2/2, index chunk 3/4. Building reference seed array... [14.128s] Building query seed array... [2.373s] Computing hash join... [5.579s] Masking low complexity seeds... [0.231s] Searching alignments... [35.464s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.759s] Building query seed array... [2.058s] Computing hash join... [5.54s] Masking low complexity seeds... [0.229s] Searching alignments... [29.453s] Deallocating memory... [0s] Deallocating buffers... [2.031s] Clearing query masking... [1.517s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [6.671s] Sorting trace points... [1.294s] Computing alignments... [31.805s] Deallocating buffers... [0.016s] Loading trace points... [0.152s] Sorting trace points... [1.268s] Computing alignments... [32.056s] Deallocating buffers... [0.066s] Loading trace points... [0.088s] Sorting trace points... [0.961s] Computing alignments... [32.245s] Deallocating buffers... [0.015s] Loading trace points... [0.061s] Sorting trace points... [1.218s] Computing alignments... [31.61s] Deallocating buffers... [0.013s] Loading trace points... [0.06s] Sorting trace points... [1.242s] Computing alignments... [31.351s] Deallocating buffers... [0.016s] Loading trace points... [0.049s] Sorting trace points... [1.15s] Computing alignments... [30.723s] Deallocating buffers... [0.013s] Loading trace points... [0s] Sorting trace points... [1.209s] Computing alignments... [30.863s] Deallocating buffers... [0.013s] Loading trace points... [0.064s] Sorting trace points... [1.159s] Computing alignments... [30.049s] Deallocating buffers... [0.013s] Loading trace points... [0.061s] Sorting trace points... [1.155s] Computing alignments... [31.063s] Deallocating buffers... [0.016s] Loading trace points... [0.062s] Sorting trace points... [1.201s] Computing alignments... [31.998s] Deallocating buffers... [0.013s] Loading trace points... [0.088s] Sorting trace points... [1.216s] Computing alignments... [31.938s] Deallocating buffers... [0.013s] Loading trace points... [0.084s] Sorting trace points... [1.21s] Computing alignments... [32.007s] Deallocating buffers... [0.014s] Loading trace points... [0.492s] Sorting trace points... [1.063s] Computing alignments... [32.044s] Deallocating buffers... [0.015s] Loading trace points... [0.117s] Sorting trace points... [1.255s] Computing alignments... [32.065s] Deallocating buffers... [0.014s] Loading trace points... [0.114s] Sorting trace points... [1.231s] Computing alignments... [32.637s] Deallocating buffers... [0.026s] Loading trace points... [0s] Sorting trace points... [1.036s] Computing alignments... [31.966s] Deallocating buffers... [0.015s] Loading trace points... [0s] [533.909s] Deallocating reference... [0.06s] Loading reference sequences... [29.506s] Masking reference... [30.914s] Initializing dictionary... [0.077s] Initializing temporary storage... [0.007s] Building reference histograms... [32.526s] Allocating buffers... [0s] Processing query block 1, reference block 4/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.781s] Building query seed array... [2.013s] Computing hash join... [6.132s] Masking low complexity seeds... [0.26s] Searching alignments... [76.159s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 1/2, index chunk 2/4. Building reference seed array... [13.468s] Building query seed array... [2.774s] Computing hash join... [5.869s] Masking low complexity seeds... [0.265s] Searching alignments... [48.69s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.658s] Building query seed array... [2.581s] Computing hash join... [5.829s] Masking low complexity seeds... [0.275s] Searching alignments... [42.702s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.801s] Building query seed array... [2.15s] Computing hash join... [6.146s] Masking low complexity seeds... [0.263s] Searching alignments... [39.2s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.39s] Building query seed array... [1.887s] Computing hash join... [6.067s] Masking low complexity seeds... [0.237s] Searching alignments... [39.911s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.69s] Building query seed array... [2.148s] Computing hash join... [6.229s] Masking low complexity seeds... [0.323s] Searching alignments... [31.36s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.414s] Building query seed array... [2.343s] Computing hash join... [6.252s] Masking low complexity seeds... [0.33s] Searching alignments... [34.566s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.18s] Building query seed array... [1.961s] Computing hash join... [5.957s] Masking low complexity seeds... [0.309s] Searching alignments... [28.667s] Deallocating memory... [0s] Deallocating buffers... [1.939s] Clearing query masking... [1.449s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [6.46s] Sorting trace points... [1.293s] Computing alignments... [31.809s] Deallocating buffers... [0.015s] Loading trace points... [0.043s] Sorting trace points... [1.153s] Computing alignments... [31.945s] Deallocating buffers... [0.037s] Loading trace points... [0.185s] Sorting trace points... [1.331s] Computing alignments... [32.114s] Deallocating buffers... [0.017s] Loading trace points... [0.078s] Sorting trace points... [1.214s] Computing alignments... [31.296s] Deallocating buffers... [0.017s] Loading trace points... [0.058s] Sorting trace points... [1.197s] Computing alignments... [31.271s] Deallocating buffers... [0.017s] Loading trace points... [0.065s] Sorting trace points... [0.852s] Computing alignments... [30.641s] Deallocating buffers... [0.015s] Loading trace points... [0.076s] Sorting trace points... [1.182s] Computing alignments... [30.564s] Deallocating buffers... [0.014s] Loading trace points... [0.095s] Sorting trace points... [1.183s] Computing alignments... [29.952s] Deallocating buffers... [0.019s] Loading trace points... [0.054s] Sorting trace points... [0.854s] Computing alignments... [30.947s] Deallocating buffers... [0.015s] Loading trace points... [0.066s] Sorting trace points... [1.227s] Computing alignments... [31.869s] Deallocating buffers... [0.017s] Loading trace points... [0.122s] Sorting trace points... [1.244s] Computing alignments... [31.845s] Deallocating buffers... [0.014s] Loading trace points... [0.183s] Sorting trace points... [1.22s] Computing alignments... [31.824s] Deallocating buffers... [0.016s] Loading trace points... [0.138s] Sorting trace points... [1.264s] Computing alignments... [31.884s] Deallocating buffers... [0.017s] Loading trace points... [0.113s] Sorting trace points... [1.233s] Computing alignments... [31.946s] Deallocating buffers... [0.013s] Loading trace points... [0.382s] Sorting trace points... [1.269s] Computing alignments... [32.172s] Deallocating buffers... [0.017s] Loading trace points... [0s] Sorting trace points... [0.987s] Computing alignments... [31.699s] Deallocating buffers... [0.016s] Loading trace points... [0s] [531.011s] Deallocating reference... [0.063s] Loading reference sequences... [29.45s] Masking reference... [32.121s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.008s] Building reference histograms... [32.17s] Allocating buffers... [0s] Processing query block 1, reference block 5/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.552s] Building query seed array... [1.952s] Computing hash join... [6.573s] Masking low complexity seeds... [0.467s] Searching alignments... [76.671s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.837s] Building query seed array... [2.739s] Computing hash join... [6.458s] Masking low complexity seeds... [0.297s] Searching alignments... [48.787s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.788s] Building query seed array... [2.591s] Computing hash join... [5.957s] Masking low complexity seeds... [0.319s] Searching alignments... [43.344s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.988s] Building query seed array... [2.13s] Computing hash join... [6.366s] Masking low complexity seeds... [0.278s] Searching alignments... [38.305s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.576s] Building query seed array... [2.002s] Computing hash join... [6.097s] Masking low complexity seeds... [0.255s] Searching alignments... [40.333s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.812s] Building query seed array... [2.208s] Computing hash join... [6.429s] Masking low complexity seeds... [0.329s] Searching alignments... [31.816s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.738s] Building query seed array... [2.246s] Computing hash join... [6.57s] Masking low complexity seeds... [0.311s] Searching alignments... [35.647s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.752s] Building query seed array... [1.914s] Computing hash join... [6.332s] Masking low complexity seeds... [0.299s] Searching alignments... [28.859s] Deallocating memory... [0s] Deallocating buffers... [2.011s] Clearing query masking... [1.463s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [6.506s] Sorting trace points... [1.309s] Computing alignments... [31.821s] Deallocating buffers... [0.016s] Loading trace points... [0.088s] Sorting trace points... [1.187s] Computing alignments... [31.964s] Deallocating buffers... [0.016s] Loading trace points... [0.131s] Sorting trace points... [1.24s] Computing alignments... [32.177s] Deallocating buffers... [0.018s] Loading trace points... [0.09s] Sorting trace points... [1.184s] Computing alignments... [31.221s] Deallocating buffers... [0.017s] Loading trace points... [0.059s] Sorting trace points... [1.053s] Computing alignments... [31.366s] Deallocating buffers... [0.014s] Loading trace points... [0.079s] Sorting trace points... [1.147s] Computing alignments... [30.728s] Deallocating buffers... [0.016s] Loading trace points... [0.105s] Sorting trace points... [1.19s] Computing alignments... [30.654s] Deallocating buffers... [0.013s] Loading trace points... [0.086s] Sorting trace points... [0.898s] Computing alignments... [30.007s] Deallocating buffers... [0.015s] Loading trace points... [0.048s] Sorting trace points... [1.191s] Computing alignments... [30.881s] Deallocating buffers... [0.013s] Loading trace points... [0.097s] Sorting trace points... [1.236s] Computing alignments... [31.863s] Deallocating buffers... [0.014s] Loading trace points... [0.052s] Sorting trace points... [1.223s] Computing alignments... [31.926s] Deallocating buffers... [0.013s] Loading trace points... [0.081s] Sorting trace points... [1.203s] Computing alignments... [31.813s] Deallocating buffers... [0.017s] Loading trace points... [0.001s] Sorting trace points... [1.24s] Computing alignments... [31.924s] Deallocating buffers... [0.014s] Loading trace points... [0.056s] Sorting trace points... [1.228s] Computing alignments... [32.02s] Deallocating buffers... [0.017s] Loading trace points... [0.502s] Sorting trace points... [1.241s] Computing alignments... [32.225s] Deallocating buffers... [0.014s] Loading trace points... [0s] Sorting trace points... [1.068s] Computing alignments... [31.845s] Deallocating buffers... [0.014s] Loading trace points... [0s] [531.601s] Deallocating reference... [0.056s] Loading reference sequences... [35.271s] Masking reference... [31.04s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.008s] Building reference histograms... [32.356s] Allocating buffers... [0s] Processing query block 1, reference block 6/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.667s] Building query seed array... [2.046s] Computing hash join... [6.466s] Masking low complexity seeds... [0.378s] Searching alignments... [77.066s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.362s] Building query seed array... [2.644s] Computing hash join... [6.114s] Masking low complexity seeds... [0.245s] Searching alignments... [49.343s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 1/2, index chunk 3/4. Building reference seed array... [14.036s] Building query seed array... [2.54s] Computing hash join... [6.903s] Masking low complexity seeds... [0.343s] Searching alignments... [42.645s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.219s] Building query seed array... [2.224s] Computing hash join... [6.591s] Masking low complexity seeds... [0.253s] Searching alignments... [38.276s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.014s] Building query seed array... [1.899s] Computing hash join... [6.151s] Masking low complexity seeds... [0.228s] Searching alignments... [39.198s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.676s] Building query seed array... [2.198s] Computing hash join... [6.198s] Masking low complexity seeds... [0.255s] Searching alignments... [31.68s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.781s] Building query seed array... [2.284s] Computing hash join... [6.072s] Masking low complexity seeds... [0.237s] Searching alignments... [33.31s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.461s] Building query seed array... [2.019s] Computing hash join... [6.241s] Masking low complexity seeds... [0.239s] Searching alignments... [28.306s] Deallocating memory... [0s] Deallocating buffers... [1.787s] Clearing query masking... [1.5s] Opening temporary output file... [0.002s] Computing alignments... Loading trace points... [6.688s] Sorting trace points... [1.273s] Computing alignments... [31.244s] Deallocating buffers... [0.014s] Loading trace points... [0.095s] Sorting trace points... [1.19s] Computing alignments... [31.323s] Deallocating buffers... [0.017s] Loading trace points... [0.067s] Sorting trace points... [1.266s] Computing alignments... [31.622s] Deallocating buffers... [0.014s] Loading trace points... [0.102s] Sorting trace points... [1.058s] Computing alignments... [30.812s] Deallocating buffers... [0.015s] Loading trace points... [0.061s] Sorting trace points... [1.213s] Computing alignments... [30.735s] Deallocating buffers... [0.017s] Loading trace points... [0.083s] Sorting trace points... [1.162s] Computing alignments... [30.126s] Deallocating buffers... [0.013s] Loading trace points... [0.069s] Sorting trace points... [1.143s] Computing alignments... [30.165s] Deallocating buffers... [0.016s] Loading trace points... [0.105s] Sorting trace points... [1.144s] Computing alignments... [29.596s] Deallocating buffers... [0.016s] Loading trace points... [0.067s] Sorting trace points... [1.152s] Computing alignments... [30.618s] Deallocating buffers... [0.016s] Loading trace points... [0.073s] Sorting trace points... [0.967s] Computing alignments... [31.507s] Deallocating buffers... [0.014s] Loading trace points... [0.066s] Sorting trace points... [0.956s] Computing alignments... [31.597s] Deallocating buffers... [0.015s] Loading trace points... [0.089s] Sorting trace points... [1.177s] Computing alignments... [31.476s] Deallocating buffers... [0.016s] Loading trace points... [0.099s] Sorting trace points... [1.237s] Computing alignments... [31.566s] Deallocating buffers... [0.014s] Loading trace points... [0.083s] Sorting trace points... [1.202s] Computing alignments... [31.607s] Deallocating buffers... [0.016s] Loading trace points... [0.072s] Sorting trace points... [1.277s] Computing alignments... [31.738s] Deallocating buffers... [0.014s] Loading trace points... [0s] Sorting trace points... [1.259s] Computing alignments... [31.434s] Deallocating buffers... [0.058s] Loading trace points... [0s] [524.06s] Deallocating reference... [0.055s] Loading reference sequences... [29.191s] Masking reference... [32.12s] Initializing dictionary... [0.079s] Initializing temporary storage... [0.008s] Building reference histograms... [32.021s] Allocating buffers... [0s] Processing query block 1, reference block 7/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.711s] Building query seed array... [1.972s] Computing hash join... [7.101s] Masking low complexity seeds... [0.534s] Searching alignments... [83.002s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.833s] Building query seed array... [2.52s] Computing hash join... [6.219s] Masking low complexity seeds... [0.271s] Searching alignments... [52.083s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.696s] Building query seed array... [2.62s] Computing hash join... [6.438s] Masking low complexity seeds... [0.278s] Searching alignments... [44.08s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.182s] Building query seed array... [2.084s] Computing hash join... [6.917s] Masking low complexity seeds... [0.269s] Searching alignments... [39.129s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.161s] Building query seed array... [1.899s] Computing hash join... [6.628s] Masking low complexity seeds... [0.293s] Searching alignments... [41.172s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.699s] Building query seed array... [2.29s] Computing hash join... [6.204s] Masking low complexity seeds... [0.242s] Searching alignments... [31.006s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.576s] Building query seed array... [2.38s] Computing hash join... [6.249s] Masking low complexity seeds... [0.23s] Searching alignments... [35.283s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.154s] Building query seed array... [1.986s] Computing hash join... [6.305s] Masking low complexity seeds... [0.231s] Searching alignments... [29.086s] Deallocating memory... [0s] Deallocating buffers... [1.628s] Clearing query masking... [1.536s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [6.612s] Sorting trace points... [1.31s] Computing alignments... [31.725s] Deallocating buffers... [0.014s] Loading trace points... [0.04s] Sorting trace points... [1.098s] Computing alignments... [32.012s] Deallocating buffers... [0.023s] Loading trace points... [0.103s] Sorting trace points... [1.252s] Computing alignments... [32.179s] Deallocating buffers... [0.014s] Loading trace points... [0.059s] Sorting trace points... [1.191s] Computing alignments... [31.358s] Deallocating buffers... [0.017s] Loading trace points... [0.078s] Sorting trace points... [1.152s] Computing alignments... [31.346s] Deallocating buffers... [0.016s] Loading trace points... [0.075s] Sorting trace points... [1.178s] Computing alignments... [30.723s] Deallocating buffers... [0.016s] Loading trace points... [0.001s] Sorting trace points... [1.19s] Computing alignments... [30.745s] Deallocating buffers... [0.013s] Loading trace points... [0.09s] Sorting trace points... [1.175s] Computing alignments... [30.071s] Deallocating buffers... [0.013s] Loading trace points... [0.094s] Sorting trace points... [1.193s] Computing alignments... [31.056s] Deallocating buffers... [0.014s] Loading trace points... [0.093s] Sorting trace points... [1.096s] Computing alignments... [31.914s] Deallocating buffers... [0.014s] Loading trace points... [0.113s] Sorting trace points... [1.021s] Computing alignments... [32.009s] Deallocating buffers... [0.016s] Loading trace points... [0.095s] Sorting trace points... [1.256s] Computing alignments... [31.821s] Deallocating buffers... [0.014s] Loading trace points... [0.061s] Sorting trace points... [1.229s] Computing alignments... [32.007s] Deallocating buffers... [0.013s] Loading trace points... [0.07s] Sorting trace points... [1.217s] Computing alignments... [32.156s] Deallocating buffers... [0.014s] Loading trace points... [0.843s] Sorting trace points... [1.283s] Computing alignments... [32.294s] Deallocating buffers... [0.014s] Loading trace points... [0s] Sorting trace points... [0.93s] Computing alignments... [32.028s] Deallocating buffers... [0.015s] Loading trace points... [0s] [533.109s] Deallocating reference... [0.063s] Loading reference sequences... [30.414s] Masking reference... [30.886s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.009s] Building reference histograms... [32.564s] Allocating buffers... [0s] Processing query block 1, reference block 8/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.433s] Building query seed array... [1.983s] Computing hash join... [6.304s] Masking low complexity seeds... [0.484s] Searching alignments... [76.95s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.629s] Building query seed array... [2.705s] Computing hash join... [6.358s] Masking low complexity seeds... [0.287s] Searching alignments... [51.171s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.781s] Building query seed array... [2.673s] Computing hash join... [6.321s] Masking low complexity seeds... [0.296s] Searching alignments... [43.932s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.7s] Building query seed array... [2.257s] Computing hash join... [6.223s] Masking low complexity seeds... [0.256s] Searching alignments... [39.944s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.203s] Building query seed array... [1.898s] Computing hash join... [6.077s] Masking low complexity seeds... [0.248s] Searching alignments... [40.727s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.788s] Building query seed array... [2.342s] Computing hash join... [5.966s] Masking low complexity seeds... [0.279s] Searching alignments... [31.837s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 2/2, index chunk 3/4. Building reference seed array... [14.236s] Building query seed array... [2.344s] Computing hash join... [6.225s] Masking low complexity seeds... [0.268s] Searching alignments... [34.764s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.291s] Building query seed array... [2.055s] Computing hash join... [6.021s] Masking low complexity seeds... [0.24s] Searching alignments... [29.441s] Deallocating memory... [0s] Deallocating buffers... [2.007s] Clearing query masking... [1.496s] Opening temporary output file... [0.002s] Computing alignments... Loading trace points... [6.821s] Sorting trace points... [1.28s] Computing alignments... [31.519s] Deallocating buffers... [0.016s] Loading trace points... [0.425s] Sorting trace points... [1.258s] Computing alignments... [31.737s] Deallocating buffers... [0.017s] Loading trace points... [0.11s] Sorting trace points... [1.233s] Computing alignments... [32.088s] Deallocating buffers... [0.017s] Loading trace points... [0.045s] Sorting trace points... [1.137s] Computing alignments... [31.132s] Deallocating buffers... [0.014s] Loading trace points... [0.046s] Sorting trace points... [1.192s] Computing alignments... [31.138s] Deallocating buffers... [0.013s] Loading trace points... [0.16s] Sorting trace points... [1.16s] Computing alignments... [30.499s] Deallocating buffers... [0.013s] Loading trace points... [0.001s] Sorting trace points... [1.137s] Computing alignments... [30.573s] Deallocating buffers... [0.016s] Loading trace points... [0.081s] Sorting trace points... [1.145s] Computing alignments... [29.921s] Deallocating buffers... [0.015s] Loading trace points... [0.123s] Sorting trace points... [1.171s] Computing alignments... [30.886s] Deallocating buffers... [0.016s] Loading trace points... [0.089s] Sorting trace points... [1.251s] Computing alignments... [31.955s] Deallocating buffers... [0.017s] Loading trace points... [0.086s] Sorting trace points... [1.212s] Computing alignments... [31.978s] Deallocating buffers... [0.017s] Loading trace points... [0.131s] Sorting trace points... [1.271s] Computing alignments... [31.911s] Deallocating buffers... [0.014s] Loading trace points... [0.053s] Sorting trace points... [1.206s] Computing alignments... [32.026s] Deallocating buffers... [0.017s] Loading trace points... [0.06s] Sorting trace points... [1.203s] Computing alignments... [32.035s] Deallocating buffers... [0.013s] Loading trace points... [0.131s] Sorting trace points... [1.206s] Computing alignments... [32.326s] Deallocating buffers... [0.014s] Loading trace points... [0s] Sorting trace points... [1.204s] Computing alignments... [31.794s] Deallocating buffers... [0.014s] Loading trace points... [0s] [531.619s] Deallocating reference... [0.056s] Loading reference sequences... [30.349s] Masking reference... [30.909s] Initializing dictionary... [0.077s] Initializing temporary storage... [0.008s] Building reference histograms... [32.975s] Allocating buffers... [0s] Processing query block 1, reference block 9/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.4s] Building query seed array... [1.971s] Computing hash join... [6.547s] Masking low complexity seeds... [0.508s] Searching alignments... [78.194s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.609s] Building query seed array... [2.686s] Computing hash join... [6.777s] Masking low complexity seeds... [0.246s] Searching alignments... [52.843s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 1/2, index chunk 3/4. Building reference seed array... [14.2s] Building query seed array... [2.582s] Computing hash join... [6.672s] Masking low complexity seeds... [0.318s] Searching alignments... [42.987s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.654s] Building query seed array... [2.209s] Computing hash join... [6.129s] Masking low complexity seeds... [0.242s] Searching alignments... [38.434s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.578s] Building query seed array... [1.876s] Computing hash join... [5.96s] Masking low complexity seeds... [0.237s] Searching alignments... [40.807s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 2/2, index chunk 2/4. Building reference seed array... [13.074s] Building query seed array... [2.216s] Computing hash join... [6.076s] Masking low complexity seeds... [0.277s] Searching alignments... [31.111s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 2/2, index chunk 3/4. Building reference seed array... [14.199s] Building query seed array... [2.303s] Computing hash join... [5.924s] Masking low complexity seeds... [0.243s] Searching alignments... [34.638s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.345s] Building query seed array... [1.916s] Computing hash join... [5.982s] Masking low complexity seeds... [0.239s] Searching alignments... [29.71s] Deallocating memory... [0s] Deallocating buffers... [2.046s] Clearing query masking... [1.52s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [6.558s] Sorting trace points... [1.309s] Computing alignments... [31.565s] Deallocating buffers... [0.014s] Loading trace points... [0.076s] Sorting trace points... [1.285s] Computing alignments... [31.694s] Deallocating buffers... [0.017s] Loading trace points... [0.079s] Sorting trace points... [1.028s] Computing alignments... [31.998s] Deallocating buffers... [0.014s] Loading trace points... [0.098s] Sorting trace points... [1.188s] Computing alignments... [31.22s] Deallocating buffers... [0.016s] Loading trace points... [0.06s] Sorting trace points... [0.87s] Computing alignments... [31.088s] Deallocating buffers... [0.015s] Loading trace points... [0.034s] Sorting trace points... [1.185s] Computing alignments... [30.52s] Deallocating buffers... [0.016s] Loading trace points... [0.098s] Sorting trace points... [1.312s] Computing alignments... [30.684s] Deallocating buffers... [0.059s] Loading trace points... [0.162s] Sorting trace points... [1.151s] Computing alignments... [30.045s] Deallocating buffers... [0.043s] Loading trace points... [0.089s] Sorting trace points... [1.165s] Computing alignments... [31.043s] Deallocating buffers... [0.013s] Loading trace points... [0.085s] Sorting trace points... [1.218s] Computing alignments... [32.387s] Deallocating buffers... [0.017s] Loading trace points... [0.069s] Sorting trace points... [1.177s] Computing alignments... [31.948s] Deallocating buffers... [0.014s] Loading trace points... [0.091s] Sorting trace points... [1.045s] Computing alignments... [31.896s] Deallocating buffers... [0.016s] Loading trace points... [0s] Sorting trace points... [1.189s] Computing alignments... [31.908s] Deallocating buffers... [0.013s] Loading trace points... [0.056s] Sorting trace points... [1.2s] Computing alignments... [31.899s] Deallocating buffers... [0.014s] Loading trace points... [0.081s] Sorting trace points... [0.889s] Computing alignments... [32.143s] Deallocating buffers... [0.015s] Loading trace points... [0s] Sorting trace points... [1.234s] Computing alignments... [31.707s] Deallocating buffers... [0.017s] Loading trace points... [0s] [530.342s] Deallocating reference... [0.064s] Loading reference sequences... [30.023s] Masking reference... [31.12s] Initializing dictionary... [0.077s] Initializing temporary storage... [0.007s] Building reference histograms... [32.476s] Allocating buffers... [0s] Processing query block 1, reference block 10/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.152s] Building query seed array... [1.995s] Computing hash join... [7.05s] Masking low complexity seeds... [0.251s] Searching alignments... [81.847s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 1/2, index chunk 2/4. Building reference seed array... [13.186s] Building query seed array... [3.071s] Computing hash join... [6.957s] Masking low complexity seeds... [0.251s] Searching alignments... [53.28s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.582s] Building query seed array... [2.624s] Computing hash join... [7.023s] Masking low complexity seeds... [0.258s] Searching alignments... [42.567s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.998s] Building query seed array... [2.236s] Computing hash join... [6.547s] Masking low complexity seeds... [0.314s] Searching alignments... [37.736s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.591s] Building query seed array... [1.946s] Computing hash join... [6.254s] Masking low complexity seeds... [0.244s] Searching alignments... [40.857s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 2/2, index chunk 2/4. Building reference seed array... [13.022s] Building query seed array... [2.282s] Computing hash join... [6.381s] Masking low complexity seeds... [0.285s] Searching alignments... [30.646s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 2/2, index chunk 3/4. Building reference seed array... [14.137s] Building query seed array... [2.326s] Computing hash join... [6.309s] Masking low complexity seeds... [0.326s] Searching alignments... [35.084s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.366s] Building query seed array... [1.885s] Computing hash join... [6.241s] Masking low complexity seeds... [0.228s] Searching alignments... [29.926s] Deallocating memory... [0s] Deallocating buffers... [1.766s] Clearing query masking... [1.539s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [6.547s] Sorting trace points... [1.301s] Computing alignments... [31.723s] Deallocating buffers... [0.015s] Loading trace points... [0.074s] Sorting trace points... [1.074s] Computing alignments... [31.725s] Deallocating buffers... [0.028s] Loading trace points... [0.113s] Sorting trace points... [1.261s] Computing alignments... [31.982s] Deallocating buffers... [0.014s] Loading trace points... [0.094s] Sorting trace points... [1.211s] Computing alignments... [31.161s] Deallocating buffers... [0.017s] Loading trace points... [0.044s] Sorting trace points... [1.241s] Computing alignments... [31.17s] Deallocating buffers... [0.017s] Loading trace points... [0.066s] Sorting trace points... [0.942s] Computing alignments... [30.55s] Deallocating buffers... [0.014s] Loading trace points... [0.199s] Sorting trace points... [0.858s] Computing alignments... [30.619s] Deallocating buffers... [0.014s] Loading trace points... [0.061s] Sorting trace points... [1.108s] Computing alignments... [29.95s] Deallocating buffers... [0.016s] Loading trace points... [0.155s] Sorting trace points... [0.876s] Computing alignments... [30.87s] Deallocating buffers... [0.015s] Loading trace points... [0.092s] Sorting trace points... [1.177s] Computing alignments... [31.917s] Deallocating buffers... [0.014s] Loading trace points... [0.058s] Sorting trace points... [1.197s] Computing alignments... [31.9s] Deallocating buffers... [0.014s] Loading trace points... [0.134s] Sorting trace points... [0.857s] Computing alignments... [31.732s] Deallocating buffers... [0.015s] Loading trace points... [0.001s] Sorting trace points... [1.237s] Computing alignments... [31.883s] Deallocating buffers... [0.013s] Loading trace points... [0.09s] Sorting trace points... [1.236s] Computing alignments... [32.115s] Deallocating buffers... [0.014s] Loading trace points... [0.067s] Sorting trace points... [1.217s] Computing alignments... [32.211s] Deallocating buffers... [0.014s] Loading trace points... [0s] Sorting trace points... [1.223s] Computing alignments... [31.86s] Deallocating buffers... [0.017s] Loading trace points... [0s] [529.666s] Deallocating reference... [0.063s] Loading reference sequences... [29.47s] Masking reference... [32.117s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.007s] Building reference histograms... [31.826s] Allocating buffers... [0s] Processing query block 1, reference block 11/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.14s] Building query seed array... [1.981s] Computing hash join... [7.034s] Masking low complexity seeds... [0.316s] Searching alignments... [78.63s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 1/2, index chunk 2/4. Building reference seed array... [13.433s] Building query seed array... [2.767s] Computing hash join... [7.121s] Masking low complexity seeds... [0.34s] Searching alignments... [49.57s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 1/2, index chunk 3/4. Building reference seed array... [14.469s] Building query seed array... [2.712s] Computing hash join... [6.815s] Masking low complexity seeds... [0.259s] Searching alignments... [41.577s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.305s] Building query seed array... [2.093s] Computing hash join... [6.931s] Masking low complexity seeds... [0.358s] Searching alignments... [37.219s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.311s] Building query seed array... [1.915s] Computing hash join... [6.532s] Masking low complexity seeds... [0.231s] Searching alignments... [39.573s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.802s] Building query seed array... [2.354s] Computing hash join... [6.408s] Masking low complexity seeds... [0.247s] Searching alignments... [30.845s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.663s] Building query seed array... [2.38s] Computing hash join... [6.283s] Masking low complexity seeds... [0.228s] Searching alignments... [34.315s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.444s] Building query seed array... [2.024s] Computing hash join... [6.305s] Masking low complexity seeds... [0.236s] Searching alignments... [28.867s] Deallocating memory... [0s] Deallocating buffers... [1.881s] Clearing query masking... [1.538s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [6.49s] Sorting trace points... [1.324s] Computing alignments... [31.844s] Deallocating buffers... [0.014s] Loading trace points... [0.044s] Sorting trace points... [1.263s] Computing alignments... [32.026s] Deallocating buffers... [0.017s] Loading trace points... [0.193s] Sorting trace points... [1.235s] Computing alignments... [32.315s] Deallocating buffers... [0.017s] Loading trace points... [0.086s] Sorting trace points... [1.244s] Computing alignments... [31.737s] Deallocating buffers... [0.017s] Loading trace points... [0s] Sorting trace points... [1.235s] Computing alignments... [31.394s] Deallocating buffers... [0.016s] Loading trace points... [0s] Sorting trace points... [1.165s] Computing alignments... [30.696s] Deallocating buffers... [0.016s] Loading trace points... [0.136s] Sorting trace points... [0.934s] Computing alignments... [30.922s] Deallocating buffers... [0.015s] Loading trace points... [0.081s] Sorting trace points... [1.129s] Computing alignments... [30.229s] Deallocating buffers... [0.013s] Loading trace points... [0.085s] Sorting trace points... [1.183s] Computing alignments... [31.094s] Deallocating buffers... [0.013s] Loading trace points... [0.065s] Sorting trace points... [1.34s] Computing alignments... [31.978s] Deallocating buffers... [0.185s] Loading trace points... [0.54s] Sorting trace points... [1.249s] Computing alignments... [31.987s] Deallocating buffers... [0.014s] Loading trace points... [0.088s] Sorting trace points... [1.197s] Computing alignments... [31.971s] Deallocating buffers... [0.013s] Loading trace points... [0.1s] Sorting trace points... [1.186s] Computing alignments... [32.078s] Deallocating buffers... [0.017s] Loading trace points... [0.065s] Sorting trace points... [0.888s] Computing alignments... [32.239s] Deallocating buffers... [0.022s] Loading trace points... [0.001s] Sorting trace points... [1.237s] Computing alignments... [32.302s] Deallocating buffers... [0.014s] Loading trace points... [0s] Sorting trace points... [1.199s] Computing alignments... [31.933s] Deallocating buffers... [0.014s] Loading trace points... [0s] [534.371s] Deallocating reference... [0.059s] Loading reference sequences... [29.491s] Masking reference... [32.006s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.007s] Building reference histograms... [31.943s] Allocating buffers... [0s] Processing query block 1, reference block 12/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.305s] Building query seed array... [1.953s] Computing hash join... [6.485s] Masking low complexity seeds... [0.256s] Searching alignments... [78.494s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.875s] Building query seed array... [2.871s] Computing hash join... [5.835s] Masking low complexity seeds... [0.26s] Searching alignments... [52.644s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.84s] Building query seed array... [2.608s] Computing hash join... [6.028s] Masking low complexity seeds... [0.263s] Searching alignments... [42.569s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 1/2, index chunk 4/4. Building reference seed array... [11.186s] Building query seed array... [2.219s] Computing hash join... [6.062s] Masking low complexity seeds... [0.295s] Searching alignments... [38.553s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.853s] Building query seed array... [1.912s] Computing hash join... [5.955s] Masking low complexity seeds... [0.297s] Searching alignments... [41.039s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 2/2, index chunk 2/4. Building reference seed array... [13.627s] Building query seed array... [2.253s] Computing hash join... [6.536s] Masking low complexity seeds... [0.25s] Searching alignments... [31.166s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.711s] Building query seed array... [2.35s] Computing hash join... [6.377s] Masking low complexity seeds... [0.253s] Searching alignments... [35.52s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.525s] Building query seed array... [1.92s] Computing hash join... [6.183s] Masking low complexity seeds... [0.257s] Searching alignments... [28.749s] Deallocating memory... [0s] Deallocating buffers... [2.181s] Clearing query masking... [1.525s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [6.575s] Sorting trace points... [1.261s] Computing alignments... [31.635s] Deallocating buffers... [0.014s] Loading trace points... [0.1s] Sorting trace points... [1.185s] Computing alignments... [31.855s] Deallocating buffers... [0.082s] Loading trace points... [0.087s] Sorting trace points... [1.282s] Computing alignments... [31.89s] Deallocating buffers... [0.014s] Loading trace points... [0.076s] Sorting trace points... [0.884s] Computing alignments... [31.173s] Deallocating buffers... [0.014s] Loading trace points... [0.052s] Sorting trace points... [1.159s] Computing alignments... [31.105s] Deallocating buffers... [0.017s] Loading trace points... [0.058s] Sorting trace points... [1.138s] Computing alignments... [30.577s] Deallocating buffers... [0.013s] Loading trace points... [0s] Sorting trace points... [1.186s] Computing alignments... [30.599s] Deallocating buffers... [0.013s] Loading trace points... [0.091s] Sorting trace points... [1.073s] Computing alignments... [29.944s] Deallocating buffers... [0.069s] Loading trace points... [0.089s] Sorting trace points... [1.066s] Computing alignments... [30.909s] Deallocating buffers... [0.014s] Loading trace points... [0.108s] Sorting trace points... [1.167s] Computing alignments... [31.963s] Deallocating buffers... [0.014s] Loading trace points... [0.084s] Sorting trace points... [0.914s] Computing alignments... [32.001s] Deallocating buffers... [0.015s] Loading trace points... [0.07s] Sorting trace points... [1.214s] Computing alignments... [31.791s] Deallocating buffers... [0.017s] Loading trace points... [0.11s] Sorting trace points... [1.039s] Computing alignments... [31.95s] Deallocating buffers... [0.014s] Loading trace points... [0.073s] Sorting trace points... [1.236s] Computing alignments... [32.092s] Deallocating buffers... [0.014s] Loading trace points... [0.054s] Sorting trace points... [1.213s] Computing alignments... [32.207s] Deallocating buffers... [0.014s] Loading trace points... [0s] Sorting trace points... [1.234s] Computing alignments... [31.862s] Deallocating buffers... [0.014s] Loading trace points... [0s] [529.939s] Deallocating reference... [0.059s] Loading reference sequences... [29.327s] Masking reference... [32.158s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.008s] Building reference histograms... [31.906s] Allocating buffers... [0s] Processing query block 1, reference block 13/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.565s] Building query seed array... [2.02s] Computing hash join... [7.126s] Masking low complexity seeds... [0.263s] Searching alignments... [78.984s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.595s] Building query seed array... [2.766s] Computing hash join... [7.027s] Masking low complexity seeds... [0.257s] Searching alignments... [50.323s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.497s] Building query seed array... [2.622s] Computing hash join... [6.942s] Masking low complexity seeds... [0.287s] Searching alignments... [42.715s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.723s] Building query seed array... [2.14s] Computing hash join... [6.788s] Masking low complexity seeds... [0.252s] Searching alignments... [39.089s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.436s] Building query seed array... [2.029s] Computing hash join... [6.918s] Masking low complexity seeds... [0.271s] Searching alignments... [40.366s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.9s] Building query seed array... [2.229s] Computing hash join... [6.279s] Masking low complexity seeds... [0.248s] Searching alignments... [31.261s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 2/2, index chunk 3/4. Building reference seed array... [14.046s] Building query seed array... [2.44s] Computing hash join... [6.276s] Masking low complexity seeds... [0.236s] Searching alignments... [36.094s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.258s] Building query seed array... [1.93s] Computing hash join... [6.247s] Masking low complexity seeds... [0.233s] Searching alignments... [29.417s] Deallocating memory... [0s] Deallocating buffers... [2.089s] Clearing query masking... [1.539s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [7.016s] Sorting trace points... [1.25s] Computing alignments... [31.602s] Deallocating buffers... [0.015s] Loading trace points... [0.14s] Sorting trace points... [1.07s] Computing alignments... [31.667s] Deallocating buffers... [0.072s] Loading trace points... [0.085s] Sorting trace points... [0.956s] Computing alignments... [32.045s] Deallocating buffers... [0.015s] Loading trace points... [0.096s] Sorting trace points... [1.182s] Computing alignments... [31.428s] Deallocating buffers... [0.013s] Loading trace points... [0.297s] Sorting trace points... [1.098s] Computing alignments... [31.114s] Deallocating buffers... [0.014s] Loading trace points... [0.048s] Sorting trace points... [1.181s] Computing alignments... [30.449s] Deallocating buffers... [0.016s] Loading trace points... [0.113s] Sorting trace points... [1.145s] Computing alignments... [30.645s] Deallocating buffers... [0.016s] Loading trace points... [0.067s] Sorting trace points... [1.14s] Computing alignments... [29.864s] Deallocating buffers... [0.016s] Loading trace points... [0.096s] Sorting trace points... [1.048s] Computing alignments... [30.821s] Deallocating buffers... [0.014s] Loading trace points... [0.1s] Sorting trace points... [1.223s] Computing alignments... [31.771s] Deallocating buffers... [0.013s] Loading trace points... [0.07s] Sorting trace points... [1.216s] Computing alignments... [31.745s] Deallocating buffers... [0.017s] Loading trace points... [0.129s] Sorting trace points... [1.202s] Computing alignments... [31.763s] Deallocating buffers... [0.088s] Loading trace points... [0.092s] Sorting trace points... [0.92s] Computing alignments... [31.934s] Deallocating buffers... [0.015s] Loading trace points... [0.063s] Sorting trace points... [1.182s] Computing alignments... [31.911s] Deallocating buffers... [0.017s] Loading trace points... [0.057s] Sorting trace points... [1.195s] Computing alignments... [32.432s] Deallocating buffers... [0.017s] Loading trace points... [0s] Sorting trace points... [1.238s] Computing alignments... [31.747s] Deallocating buffers... [0.014s] Loading trace points... [0s] [530.313s] Deallocating reference... [0.067s] Loading reference sequences... [23.544s] Masking reference... [26.061s] Initializing dictionary... [0.063s] Initializing temporary storage... [0.009s] Building reference histograms... [26.592s] Allocating buffers... [0s] Processing query block 1, reference block 14/14, shape 1/2, index chunk 1/4. Building reference seed array... [8.512s] Building query seed array... [1.968s] Computing hash join... [4.874s] Masking low complexity seeds... [0.237s] Searching alignments... [60.063s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 1/2, index chunk 2/4. Building reference seed array... [10.3s] Building query seed array... [2.875s] Computing hash join... [4.768s] Masking low complexity seeds... [0.229s] Searching alignments... [40.122s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 1/2, index chunk 3/4. Building reference seed array... [10.684s] Building query seed array... [2.52s] Computing hash join... [4.752s] Masking low complexity seeds... [0.255s] Searching alignments... [35.08s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 1/2, index chunk 4/4. Building reference seed array... [8.511s] Building query seed array... [2.181s] Computing hash join... [4.735s] Masking low complexity seeds... [0.256s] Searching alignments... [30.56s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 2/2, index chunk 1/4. Building reference seed array... [8.194s] Building query seed array... [1.894s] Computing hash join... [4.675s] Masking low complexity seeds... [0.231s] Searching alignments... [33.4s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 2/2, index chunk 2/4. Building reference seed array... [9.892s] Building query seed array... [2.31s] Computing hash join... [4.632s] Masking low complexity seeds... [0.239s] Searching alignments... [27.197s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 2/2, index chunk 3/4. Building reference seed array... [10.689s] Building query seed array... [2.352s] Computing hash join... [4.919s] Masking low complexity seeds... [0.231s] Searching alignments... [27.667s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 2/2, index chunk 4/4. Building reference seed array... [8.426s] Building query seed array... [1.981s] Computing hash join... [4.746s] Masking low complexity seeds... [0.238s] Searching alignments... [23.687s] Deallocating memory... [0s] Deallocating buffers... [1.024s] Clearing query masking... [1.514s] Opening temporary output file... [0.011s] Computing alignments... Loading trace points... [10.942s] Sorting trace points... [2.136s] Computing alignments... [50.389s] Deallocating buffers... [0.022s] Loading trace points... [0.187s] Sorting trace points... [2.039s] Computing alignments... [50.308s] Deallocating buffers... [0.022s] Loading trace points... [0.202s] Sorting trace points... [1.796s] Computing alignments... [49.765s] Deallocating buffers... [0.209s] Loading trace points... [0.247s] Sorting trace points... [1.904s] Computing alignments... [48.197s] Deallocating buffers... [0.026s] Loading trace points... [0.105s] Sorting trace points... [2.011s] Computing alignments... [50.034s] Deallocating buffers... [0.027s] Loading trace points... [0.095s] Sorting trace points... [2.157s] Computing alignments... [50.764s] Deallocating buffers... [0.327s] Loading trace points... [0.12s] Sorting trace points... [2.059s] Computing alignments... [50.818s] Deallocating buffers... [0.022s] Loading trace points... [0s] Sorting trace points... [2.001s] Computing alignments... [50.585s] Deallocating buffers... [0.027s] Loading trace points... [0s] [429.773s] Deallocating reference... [0.047s] Loading reference sequences... [0.083s] Deallocating buffers... [0s] Joining output blocks... Joining output blocks... [2171.34s] [2171.34s] Deallocating queries... [0.068s] Loading query sequences... [0s] Closing the input file... [0s] Closing the output file... Loading dictionary... [4.431s] [5.456s] Closing the database... [0s] Cleaning up... [0s] Total time = 18038.5s Reported 2302232119 pairwise alignments, 2302232119 HSPs. 12809835 queries aligned. DIAMOND BLASTx on /gscratch/srlab/sam/data/P_verrucosa/RNAseq/C18_R2.fastp-trim.20230215.fq.gz complete: C18_R2.blastx.meganized.daa Now MEGANizing C18_R2.blastx.meganized.daa Version MEGAN Community Edition (version 6.22.0, built 19 Feb 2022) Author(s) Daniel H. Huson Copyright (C) 2022 Daniel H. Huson. This program comes with ABSOLUTELY NO WARRANTY. Java version: 17.0.2 Functional classifications to use: EC, EGGNOG, GTDB, INTERPRO2GO, SEED Loading ncbi.map: 2,396,736 Loading ncbi.tre: 2,396,740 Loading ec.map: 8,200 Loading ec.tre: 8,204 Loading eggnog.map: 30,875 Loading eggnog.tre: 30,986 Loading gtdb.map: 240,103 Loading gtdb.tre: 240,107 Loading interpro2go.map: 14,242 Loading interpro2go.tre: 28,907 Loading seed.map: 961 Loading seed.tre: 962 Meganizing: C18_R2.blastx.meganized.daa Meganizing init Annotating DAA file using FAST mode (accession database and first accession per line) Annotating references 10% 20% 30% 40% 50% 60% 70% 100% (410.0s) Writing 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (1.4s) Binning reads Initializing... Initializing binning... Using 'Naive LCA' algorithm for binning: Taxonomy Using Best-Hit algorithm for binning: SEED Using Best-Hit algorithm for binning: EGGNOG Using 'Naive LCA' algorithm for binning: GTDB Using Best-Hit algorithm for binning: EC Using Best-Hit algorithm for binning: INTERPRO2GO Binning reads... Binning reads Analyzing alignments 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (4,410.6s) Total reads: 12,809,835 With hits: 12,809,835 Alignments: 2,292,127,840 Assig. Taxonomy: 11,773,622 Assig. SEED: 95,426 Assig. EGGNOG: 41,960 Assig. GTDB: 337,071 Assig. EC: 2,093,302 Assig. INTERPRO2GO: 1,126,630 MinSupport set to: 6404 Binning reads Applying min-support & disabled filter to Taxonomy... 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (0.5s) Min-supp. changes: 3,644 Binning reads Applying min-support & disabled filter to GTDB... 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (9.9s) Min-supp. changes: 2,782 Binning reads Writing classification tables 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (26.8s) Binning reads Syncing 100% (0.5s) Class. Taxonomy: 73 Class. SEED: 467 Class. EGGNOG: 1,655 Class. GTDB: 15 Class. EC: 2,269 Class. INTERPRO2GO: 7,849 Total time: 4,869s Peak memory: 37.2 of 195.3G MEGANization of C18_R2.blastx.meganized.daa completed. Generating MD5 checksum for /gscratch/srlab/sam/data/P_verrucosa/RNAseq/C19_R1.fastp-trim.20230215.fq.gz... 00b83460c674d3d9fd368c439acb73a8 /gscratch/srlab/sam/data/P_verrucosa/RNAseq/C19_R1.fastp-trim.20230215.fq.gz Running DIAMOND BLASTx on /gscratch/srlab/sam/data/P_verrucosa/RNAseq/C19_R1.fastp-trim.20230215.fq.gz. diamond v2.1.1.155 (C) Max Planck Society for the Advancement of Science Documentation, support and updates available at http://www.diamondsearch.org Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021) #CPU threads: 40 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: Percentage range of top alignment score to report hits: 5 Opening the database... [0.363s] Database: /gscratch/srlab/blastdbs/20230215-ncbi-nr/20230215-ncbi-nr.dmnd (type: Diamond database, sequences: 526308523, letters: 207134680681) Block size = 15000000000 Opening the input file... [0.858s] Opening the output file... [0s] Loading query sequences... [75.89s] Masking queries... [19.201s] Algorithm: Double-indexed Building query histograms... [17.921s] Loading reference sequences... [29.747s] Masking reference... [31.125s] Initializing dictionary... [0.079s] Initializing temporary storage... [0.007s] Building reference histograms... [32.562s] Allocating buffers... [0s] Processing query block 1, reference block 1/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.54s] Building query seed array... [2.124s] Computing hash join... [6.659s] Masking low complexity seeds... [0.221s] Searching alignments... [86.941s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.336s] Building query seed array... [3.043s] Computing hash join... [5.674s] Masking low complexity seeds... [0.254s] Searching alignments... [58.995s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 1/2, index chunk 3/4. Building reference seed array... [14.417s] Building query seed array... [2.878s] Computing hash join... [6.092s] Masking low complexity seeds... [0.214s] Searching alignments... [47.37s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.535s] Building query seed array... [2.409s] Computing hash join... [5.866s] Masking low complexity seeds... [0.219s] Searching alignments... [42.026s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.751s] Building query seed array... [2.033s] Computing hash join... [5.465s] Masking low complexity seeds... [0.238s] Searching alignments... [41.647s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 2/2, index chunk 2/4. Building reference seed array... [13.23s] Building query seed array... [2.422s] Computing hash join... [5.789s] Masking low complexity seeds... [0.203s] Searching alignments... [34.122s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.546s] Building query seed array... [2.559s] Computing hash join... [5.919s] Masking low complexity seeds... [0.211s] Searching alignments... [37.96s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.543s] Building query seed array... [2.116s] Computing hash join... [5.874s] Masking low complexity seeds... [0.218s] Searching alignments... [31.066s] Deallocating memory... [0s] Deallocating buffers... [1.887s] Clearing query masking... [1.637s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [6.699s] Sorting trace points... [1.334s] Computing alignments... [32.83s] Deallocating buffers... [0.015s] Loading trace points... [0.056s] Sorting trace points... [0.94s] Computing alignments... [33.041s] Deallocating buffers... [0.016s] Loading trace points... [0.001s] Sorting trace points... [0.897s] Computing alignments... [32.662s] Deallocating buffers... [0.015s] Loading trace points... [0.056s] Sorting trace points... [1.115s] Computing alignments... [33.815s] Deallocating buffers... [0.015s] Loading trace points... [0.062s] Sorting trace points... [1.008s] Computing alignments... [33.977s] Deallocating buffers... [0.016s] Loading trace points... [0.927s] Sorting trace points... [1.352s] Computing alignments... [34.664s] Deallocating buffers... [0.015s] Loading trace points... [0.072s] Sorting trace points... [1.307s] Computing alignments... [33.847s] Deallocating buffers... [0.015s] Loading trace points... [0.001s] Sorting trace points... [0.917s] Computing alignments... [33.582s] Deallocating buffers... [0.016s] Loading trace points... [0.105s] Sorting trace points... [1.067s] Computing alignments... [33.593s] Deallocating buffers... [0.017s] Loading trace points... [0.056s] Sorting trace points... [1.275s] Computing alignments... [33.467s] Deallocating buffers... [0.017s] Loading trace points... [0.118s] Sorting trace points... [1.323s] Computing alignments... [33.731s] Deallocating buffers... [0.015s] Loading trace points... [0.066s] Sorting trace points... [1.301s] Computing alignments... [33.342s] Deallocating buffers... [0.014s] Loading trace points... [0.106s] Sorting trace points... [1.246s] Computing alignments... [33.664s] Deallocating buffers... [0.014s] Loading trace points... [0.046s] Sorting trace points... [0.969s] Computing alignments... [33.852s] Deallocating buffers... [0.016s] Loading trace points... [0.037s] Sorting trace points... [0.942s] Computing alignments... [33.74s] Deallocating buffers... [0.016s] Loading trace points... [0s] Sorting trace points... [1.089s] Computing alignments... [33.448s] Deallocating buffers... [0.017s] Loading trace points... [0s] [564.124s] Deallocating reference... [0.056s] Loading reference sequences... [33.715s] Masking reference... [31.652s] Initializing dictionary... [0.077s] Initializing temporary storage... [0.007s] Building reference histograms... [33.419s] Allocating buffers... [0s] Processing query block 1, reference block 2/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.22s] Building query seed array... [2.15s] Computing hash join... [6.765s] Masking low complexity seeds... [0.483s] Searching alignments... [83.402s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.708s] Building query seed array... [2.818s] Computing hash join... [6.252s] Masking low complexity seeds... [0.213s] Searching alignments... [57.976s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.375s] Building query seed array... [2.676s] Computing hash join... [6.558s] Masking low complexity seeds... [0.216s] Searching alignments... [47.745s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.487s] Building query seed array... [2.453s] Computing hash join... [6.43s] Masking low complexity seeds... [0.218s] Searching alignments... [40.17s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.281s] Building query seed array... [2.184s] Computing hash join... [6.307s] Masking low complexity seeds... [0.219s] Searching alignments... [41.131s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 2/2, index chunk 2/4. Building reference seed array... [11.878s] Building query seed array... [2.479s] Computing hash join... [6.351s] Masking low complexity seeds... [0.232s] Searching alignments... [34.167s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.908s] Building query seed array... [2.583s] Computing hash join... [6.159s] Masking low complexity seeds... [0.219s] Searching alignments... [37.348s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.499s] Building query seed array... [2.043s] Computing hash join... [6.064s] Masking low complexity seeds... [0.207s] Searching alignments... [31.671s] Deallocating memory... [0s] Deallocating buffers... [1.428s] Clearing query masking... [1.687s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [6.79s] Sorting trace points... [1.335s] Computing alignments... [32.584s] Deallocating buffers... [0.017s] Loading trace points... [0.078s] Sorting trace points... [1.235s] Computing alignments... [32.779s] Deallocating buffers... [0.015s] Loading trace points... [0.118s] Sorting trace points... [1.205s] Computing alignments... [32.456s] Deallocating buffers... [0.017s] Loading trace points... [0.06s] Sorting trace points... [0.922s] Computing alignments... [33.439s] Deallocating buffers... [0.016s] Loading trace points... [0.002s] Sorting trace points... [0.963s] Computing alignments... [33.652s] Deallocating buffers... [0.022s] Loading trace points... [0.067s] Sorting trace points... [1.292s] Computing alignments... [34.124s] Deallocating buffers... [0.015s] Loading trace points... [0.079s] Sorting trace points... [1.281s] Computing alignments... [33.386s] Deallocating buffers... [0.015s] Loading trace points... [0.098s] Sorting trace points... [1.313s] Computing alignments... [33.416s] Deallocating buffers... [0.017s] Loading trace points... [0.083s] Sorting trace points... [1.251s] Computing alignments... [33.364s] Deallocating buffers... [0.014s] Loading trace points... [0.083s] Sorting trace points... [1.321s] Computing alignments... [33.175s] Deallocating buffers... [0.015s] Loading trace points... [0.13s] Sorting trace points... [1.256s] Computing alignments... [33.515s] Deallocating buffers... [0.017s] Loading trace points... [0.117s] Sorting trace points... [1.265s] Computing alignments... [32.979s] Deallocating buffers... [0.014s] Loading trace points... [0.119s] Sorting trace points... [1.037s] Computing alignments... [33.383s] Deallocating buffers... [0.015s] Loading trace points... [0.097s] Sorting trace points... [1.343s] Computing alignments... [33.588s] Deallocating buffers... [0.018s] Loading trace points... [0.064s] Sorting trace points... [1.088s] Computing alignments... [33.342s] Deallocating buffers... [0.015s] Loading trace points... [0s] Sorting trace points... [1.227s] Computing alignments... [33.138s] Deallocating buffers... [0.017s] Loading trace points... [0s] [560.146s] Deallocating reference... [0.068s] Loading reference sequences... [31.233s] Masking reference... [31.43s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.008s] Building reference histograms... [32.47s] Allocating buffers... [0s] Processing query block 1, reference block 3/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.527s] Building query seed array... [2.166s] Computing hash join... [6.634s] Masking low complexity seeds... [0.524s] Searching alignments... [86.148s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 1/2, index chunk 2/4. Building reference seed array... [13.51s] Building query seed array... [3.046s] Computing hash join... [6.638s] Masking low complexity seeds... [0.231s] Searching alignments... [57.279s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 1/2, index chunk 3/4. Building reference seed array... [14.051s] Building query seed array... [2.867s] Computing hash join... [6.337s] Masking low complexity seeds... [0.239s] Searching alignments... [48.084s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.549s] Building query seed array... [2.327s] Computing hash join... [6.613s] Masking low complexity seeds... [0.224s] Searching alignments... [41.628s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.432s] Building query seed array... [1.993s] Computing hash join... [6.7s] Masking low complexity seeds... [0.317s] Searching alignments... [42.126s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.592s] Building query seed array... [2.381s] Computing hash join... [6.207s] Masking low complexity seeds... [0.212s] Searching alignments... [33.276s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 2/2, index chunk 3/4. Building reference seed array... [14.004s] Building query seed array... [2.67s] Computing hash join... [6.426s] Masking low complexity seeds... [0.213s] Searching alignments... [37.373s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.574s] Building query seed array... [2.174s] Computing hash join... [6.284s] Masking low complexity seeds... [0.204s] Searching alignments... [32.449s] Deallocating memory... [0s] Deallocating buffers... [1.711s] Clearing query masking... [1.596s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [6.635s] Sorting trace points... [1.305s] Computing alignments... [32.331s] Deallocating buffers... [0.014s] Loading trace points... [0.14s] Sorting trace points... [1.17s] Computing alignments... [32.53s] Deallocating buffers... [0.019s] Loading trace points... [0s] Sorting trace points... [1.222s] Computing alignments... [32.4s] Deallocating buffers... [0.017s] Loading trace points... [0.064s] Sorting trace points... [1.267s] Computing alignments... [33.262s] Deallocating buffers... [0.014s] Loading trace points... [0.079s] Sorting trace points... [1.318s] Computing alignments... [33.481s] Deallocating buffers... [0.018s] Loading trace points... [0.073s] Sorting trace points... [1.329s] Computing alignments... [34.168s] Deallocating buffers... [0.015s] Loading trace points... [0.085s] Sorting trace points... [1.314s] Computing alignments... [33.412s] Deallocating buffers... [0.018s] Loading trace points... [0.093s] Sorting trace points... [1.289s] Computing alignments... [33.179s] Deallocating buffers... [0.018s] Loading trace points... [0.1s] Sorting trace points... [1.093s] Computing alignments... [33.072s] Deallocating buffers... [0.015s] Loading trace points... [0.001s] Sorting trace points... [1.264s] Computing alignments... [32.978s] Deallocating buffers... [0.014s] Loading trace points... [0.109s] Sorting trace points... [1.286s] Computing alignments... [33.143s] Deallocating buffers... [0.014s] Loading trace points... [0.001s] Sorting trace points... [1.38s] Computing alignments... [32.835s] Deallocating buffers... [0.116s] Loading trace points... [0.049s] Sorting trace points... [1.292s] Computing alignments... [33.134s] Deallocating buffers... [0.014s] Loading trace points... [0.001s] Sorting trace points... [1.13s] Computing alignments... [33.497s] Deallocating buffers... [0.017s] Loading trace points... [0.076s] Sorting trace points... [1.294s] Computing alignments... [33.245s] Deallocating buffers... [0.014s] Loading trace points... [0s] Sorting trace points... [1.253s] Computing alignments... [32.947s] Deallocating buffers... [0.018s] Loading trace points... [0s] [557.86s] Deallocating reference... [0.058s] Loading reference sequences... [29.522s] Masking reference... [30.875s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.008s] Building reference histograms... [32.638s] Allocating buffers... [0s] Processing query block 1, reference block 4/14, shape 1/2, index chunk 1/4. Building reference seed array... [9.961s] Building query seed array... [2.095s] Computing hash join... [5.692s] Masking low complexity seeds... [0.209s] Searching alignments... [84.016s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 1/2, index chunk 2/4. Building reference seed array... [13.696s] Building query seed array... [3.015s] Computing hash join... [6.333s] Masking low complexity seeds... [0.231s] Searching alignments... [58.474s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 1/2, index chunk 3/4. Building reference seed array... [14.36s] Building query seed array... [2.91s] Computing hash join... [6.568s] Masking low complexity seeds... [0.222s] Searching alignments... [47.749s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.143s] Building query seed array... [2.391s] Computing hash join... [5.89s] Masking low complexity seeds... [0.238s] Searching alignments... [41.341s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.715s] Building query seed array... [2.071s] Computing hash join... [5.694s] Masking low complexity seeds... [0.239s] Searching alignments... [41.113s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.825s] Building query seed array... [2.371s] Computing hash join... [5.963s] Masking low complexity seeds... [0.232s] Searching alignments... [33.07s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.994s] Building query seed array... [2.606s] Computing hash join... [5.967s] Masking low complexity seeds... [0.234s] Searching alignments... [36.816s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.535s] Building query seed array... [2.023s] Computing hash join... [5.64s] Masking low complexity seeds... [0.238s] Searching alignments... [31.75s] Deallocating memory... [0s] Deallocating buffers... [2.055s] Clearing query masking... [1.617s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [6.872s] Sorting trace points... [1.343s] Computing alignments... [32.578s] Deallocating buffers... [0.015s] Loading trace points... [0.059s] Sorting trace points... [1.185s] Computing alignments... [32.606s] Deallocating buffers... [0.018s] Loading trace points... [0.082s] Sorting trace points... [1.232s] Computing alignments... [32.204s] Deallocating buffers... [0.014s] Loading trace points... [0.136s] Sorting trace points... [0.93s] Computing alignments... [33.465s] Deallocating buffers... [0.016s] Loading trace points... [0.074s] Sorting trace points... [1.07s] Computing alignments... [33.565s] Deallocating buffers... [0.017s] Loading trace points... [0.087s] Sorting trace points... [0.96s] Computing alignments... [34.128s] Deallocating buffers... [0.017s] Loading trace points... [0.076s] Sorting trace points... [1.06s] Computing alignments... [33.449s] Deallocating buffers... [0.017s] Loading trace points... [0.101s] Sorting trace points... [1.288s] Computing alignments... [33.214s] Deallocating buffers... [0.015s] Loading trace points... [0.106s] Sorting trace points... [1.325s] Computing alignments... [33.277s] Deallocating buffers... [0.015s] Loading trace points... [0s] Sorting trace points... [1.297s] Computing alignments... [33.129s] Deallocating buffers... [0.014s] Loading trace points... [0.708s] Sorting trace points... [1.294s] Computing alignments... [33.348s] Deallocating buffers... [0.017s] Loading trace points... [0.001s] Sorting trace points... [1.183s] Computing alignments... [32.935s] Deallocating buffers... [0.017s] Loading trace points... [0.108s] Sorting trace points... [1.215s] Computing alignments... [33.346s] Deallocating buffers... [0.015s] Loading trace points... [0s] Sorting trace points... [1.256s] Computing alignments... [33.41s] Deallocating buffers... [0.015s] Loading trace points... [0.094s] Sorting trace points... [1.277s] Computing alignments... [33.473s] Deallocating buffers... [0.014s] Loading trace points... [0s] Sorting trace points... [1.289s] Computing alignments... [33.015s] Deallocating buffers... [0.014s] Loading trace points... [0s] [559.245s] Deallocating reference... [0.064s] Loading reference sequences... [29.298s] Masking reference... [30.876s] Initializing dictionary... [0.077s] Initializing temporary storage... [0.008s] Building reference histograms... [33.462s] Allocating buffers... [0s] Processing query block 1, reference block 5/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.227s] Building query seed array... [2.14s] Computing hash join... [6.563s] Masking low complexity seeds... [0.222s] Searching alignments... [83.043s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 1/2, index chunk 2/4. Building reference seed array... [13.149s] Building query seed array... [3.162s] Computing hash join... [7.08s] Masking low complexity seeds... [0.257s] Searching alignments... [57.128s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.605s] Building query seed array... [2.786s] Computing hash join... [7.031s] Masking low complexity seeds... [0.332s] Searching alignments... [47.347s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.462s] Building query seed array... [2.368s] Computing hash join... [6.421s] Masking low complexity seeds... [0.235s] Searching alignments... [42.59s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.153s] Building query seed array... [2.043s] Computing hash join... [6.338s] Masking low complexity seeds... [0.223s] Searching alignments... [42.979s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.965s] Building query seed array... [2.516s] Computing hash join... [6.756s] Masking low complexity seeds... [0.294s] Searching alignments... [34.199s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.754s] Building query seed array... [2.494s] Computing hash join... [6.875s] Masking low complexity seeds... [0.264s] Searching alignments... [36.418s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.329s] Building query seed array... [2.078s] Computing hash join... [6.429s] Masking low complexity seeds... [0.209s] Searching alignments... [31.517s] Deallocating memory... [0s] Deallocating buffers... [1.714s] Clearing query masking... [1.639s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [6.632s] Sorting trace points... [1.344s] Computing alignments... [32.52s] Deallocating buffers... [0.015s] Loading trace points... [0.101s] Sorting trace points... [1.439s] Computing alignments... [33.082s] Deallocating buffers... [0.364s] Loading trace points... [0.115s] Sorting trace points... [1.172s] Computing alignments... [32.323s] Deallocating buffers... [0.017s] Loading trace points... [0.534s] Sorting trace points... [1.074s] Computing alignments... [33.463s] Deallocating buffers... [0.016s] Loading trace points... [0.091s] Sorting trace points... [1.328s] Computing alignments... [33.718s] Deallocating buffers... [0.018s] Loading trace points... [0.063s] Sorting trace points... [1.095s] Computing alignments... [34.326s] Deallocating buffers... [0.018s] Loading trace points... [0.083s] Sorting trace points... [1.281s] Computing alignments... [33.632s] Deallocating buffers... [0.015s] Loading trace points... [0.091s] Sorting trace points... [1.297s] Computing alignments... [33.363s] Deallocating buffers... [0.014s] Loading trace points... [0.084s] Sorting trace points... [1.005s] Computing alignments... [33.379s] Deallocating buffers... [0.016s] Loading trace points... [0.089s] Sorting trace points... [1.15s] Computing alignments... [33.134s] Deallocating buffers... [0.015s] Loading trace points... [0.079s] Sorting trace points... [1.331s] Computing alignments... [33.263s] Deallocating buffers... [0.014s] Loading trace points... [0.121s] Sorting trace points... [1.264s] Computing alignments... [32.991s] Deallocating buffers... [0.014s] Loading trace points... [0.164s] Sorting trace points... [1.231s] Computing alignments... [33.428s] Deallocating buffers... [0.015s] Loading trace points... [0.093s] Sorting trace points... [1.068s] Computing alignments... [33.603s] Deallocating buffers... [0.015s] Loading trace points... [0.067s] Sorting trace points... [1.311s] Computing alignments... [33.548s] Deallocating buffers... [0.014s] Loading trace points... [0s] Sorting trace points... [1.261s] Computing alignments... [33.077s] Deallocating buffers... [0.018s] Loading trace points... [0s] [561.727s] Deallocating reference... [0.06s] Loading reference sequences... [32.031s] Masking reference... [31.224s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.008s] Building reference histograms... [32.46s] Allocating buffers... [0s] Processing query block 1, reference block 6/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.557s] Building query seed array... [2.219s] Computing hash join... [6.35s] Masking low complexity seeds... [0.402s] Searching alignments... [80.855s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.905s] Building query seed array... [2.787s] Computing hash join... [6.431s] Masking low complexity seeds... [0.257s] Searching alignments... [56.48s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 1/2, index chunk 3/4. Building reference seed array... [14.198s] Building query seed array... [2.894s] Computing hash join... [6.205s] Masking low complexity seeds... [0.21s] Searching alignments... [46.468s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.092s] Building query seed array... [2.422s] Computing hash join... [6.066s] Masking low complexity seeds... [0.227s] Searching alignments... [41.109s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.748s] Building query seed array... [2.032s] Computing hash join... [5.784s] Masking low complexity seeds... [0.22s] Searching alignments... [40.474s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.824s] Building query seed array... [2.358s] Computing hash join... [5.7s] Masking low complexity seeds... [0.238s] Searching alignments... [32.507s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.904s] Building query seed array... [2.549s] Computing hash join... [5.827s] Masking low complexity seeds... [0.24s] Searching alignments... [37.301s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.96s] Building query seed array... [2.086s] Computing hash join... [5.742s] Masking low complexity seeds... [0.224s] Searching alignments... [30.091s] Deallocating memory... [0s] Deallocating buffers... [2.242s] Clearing query masking... [1.75s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [6.322s] Sorting trace points... [1.342s] Computing alignments... [32.032s] Deallocating buffers... [0.017s] Loading trace points... [0.076s] Sorting trace points... [1.169s] Computing alignments... [32.279s] Deallocating buffers... [0.024s] Loading trace points... [0.056s] Sorting trace points... [1.249s] Computing alignments... [31.882s] Deallocating buffers... [0.014s] Loading trace points... [0.036s] Sorting trace points... [1.287s] Computing alignments... [32.908s] Deallocating buffers... [0.014s] Loading trace points... [0.066s] Sorting trace points... [1.344s] Computing alignments... [33.186s] Deallocating buffers... [0.015s] Loading trace points... [0.072s] Sorting trace points... [1.307s] Computing alignments... [33.731s] Deallocating buffers... [0.018s] Loading trace points... [0.147s] Sorting trace points... [1.49s] Computing alignments... [32.945s] Deallocating buffers... [0.189s] Loading trace points... [0.11s] Sorting trace points... [1.299s] Computing alignments... [32.81s] Deallocating buffers... [0.014s] Loading trace points... [0.065s] Sorting trace points... [1.017s] Computing alignments... [32.877s] Deallocating buffers... [0.015s] Loading trace points... [0.077s] Sorting trace points... [1.299s] Computing alignments... [32.749s] Deallocating buffers... [0.017s] Loading trace points... [0.068s] Sorting trace points... [1.117s] Computing alignments... [33.032s] Deallocating buffers... [0.015s] Loading trace points... [0.059s] Sorting trace points... [1.297s] Computing alignments... [32.769s] Deallocating buffers... [0.015s] Loading trace points... [0s] Sorting trace points... [1.271s] Computing alignments... [33.015s] Deallocating buffers... [0.018s] Loading trace points... [0.08s] Sorting trace points... [1.279s] Computing alignments... [33.105s] Deallocating buffers... [0.018s] Loading trace points... [0.092s] Sorting trace points... [1.013s] Computing alignments... [33.106s] Deallocating buffers... [0.016s] Loading trace points... [0s] Sorting trace points... [1.27s] Computing alignments... [32.692s] Deallocating buffers... [0.015s] Loading trace points... [0s] [553.007s] Deallocating reference... [0.057s] Loading reference sequences... [31.068s] Masking reference... [30.901s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.007s] Building reference histograms... [33.381s] Allocating buffers... [0s] Processing query block 1, reference block 7/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.413s] Building query seed array... [2.115s] Computing hash join... [6.479s] Masking low complexity seeds... [0.474s] Searching alignments... [84.587s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 1/2, index chunk 2/4. Building reference seed array... [13.174s] Building query seed array... [3.039s] Computing hash join... [6.31s] Masking low complexity seeds... [0.251s] Searching alignments... [59.649s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 1/2, index chunk 3/4. Building reference seed array... [14.078s] Building query seed array... [2.774s] Computing hash join... [6.648s] Masking low complexity seeds... [0.295s] Searching alignments... [45.746s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 1/2, index chunk 4/4. Building reference seed array... [11.082s] Building query seed array... [2.437s] Computing hash join... [5.946s] Masking low complexity seeds... [0.246s] Searching alignments... [40.972s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 2/2, index chunk 1/4. Building reference seed array... [11.069s] Building query seed array... [2.212s] Computing hash join... [5.701s] Masking low complexity seeds... [0.266s] Searching alignments... [41.706s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 2/2, index chunk 2/4. Building reference seed array... [13.145s] Building query seed array... [2.495s] Computing hash join... [5.851s] Masking low complexity seeds... [0.224s] Searching alignments... [33.102s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.296s] Building query seed array... [2.464s] Computing hash join... [5.669s] Masking low complexity seeds... [0.234s] Searching alignments... [36.779s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.919s] Building query seed array... [2.052s] Computing hash join... [5.53s] Masking low complexity seeds... [0.215s] Searching alignments... [31.181s] Deallocating memory... [0s] Deallocating buffers... [2.282s] Clearing query masking... [1.632s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [6.685s] Sorting trace points... [1.307s] Computing alignments... [32.457s] Deallocating buffers... [0.015s] Loading trace points... [0.069s] Sorting trace points... [1.263s] Computing alignments... [32.763s] Deallocating buffers... [0.017s] Loading trace points... [0.062s] Sorting trace points... [1.25s] Computing alignments... [32.345s] Deallocating buffers... [0.014s] Loading trace points... [0.152s] Sorting trace points... [1.156s] Computing alignments... [33.457s] Deallocating buffers... [0.017s] Loading trace points... [0.196s] Sorting trace points... [1.309s] Computing alignments... [33.696s] Deallocating buffers... [0.018s] Loading trace points... [0.075s] Sorting trace points... [1.277s] Computing alignments... [34.378s] Deallocating buffers... [0.015s] Loading trace points... [0.195s] Sorting trace points... [1.258s] Computing alignments... [33.649s] Deallocating buffers... [0.015s] Loading trace points... [0.001s] Sorting trace points... [1.291s] Computing alignments... [33.367s] Deallocating buffers... [0.017s] Loading trace points... [0.133s] Sorting trace points... [1.295s] Computing alignments... [33.346s] Deallocating buffers... [0.014s] Loading trace points... [0.05s] Sorting trace points... [1.252s] Computing alignments... [33.152s] Deallocating buffers... [0.018s] Loading trace points... [0.068s] Sorting trace points... [1.005s] Computing alignments... [33.267s] Deallocating buffers... [0.016s] Loading trace points... [0.103s] Sorting trace points... [1.276s] Computing alignments... [32.868s] Deallocating buffers... [0.018s] Loading trace points... [0.05s] Sorting trace points... [1.291s] Computing alignments... [33.316s] Deallocating buffers... [0.017s] Loading trace points... [0.047s] Sorting trace points... [1.178s] Computing alignments... [33.598s] Deallocating buffers... [0.017s] Loading trace points... [0.064s] Sorting trace points... [1.317s] Computing alignments... [33.387s] Deallocating buffers... [0.018s] Loading trace points... [0s] Sorting trace points... [1.289s] Computing alignments... [33.072s] Deallocating buffers... [0.014s] Loading trace points... [0s] [560.502s] Deallocating reference... [0.057s] Loading reference sequences... [33.142s] Masking reference... [30.907s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.009s] Building reference histograms... [32.718s] Allocating buffers... [0s] Processing query block 1, reference block 8/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.359s] Building query seed array... [2.083s] Computing hash join... [6.749s] Masking low complexity seeds... [0.536s] Searching alignments... [85.742s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 1/2, index chunk 2/4. Building reference seed array... [13.251s] Building query seed array... [2.933s] Computing hash join... [7.224s] Masking low complexity seeds... [0.223s] Searching alignments... [56.752s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 1/2, index chunk 3/4. Building reference seed array... [14.109s] Building query seed array... [2.789s] Computing hash join... [7.403s] Masking low complexity seeds... [0.22s] Searching alignments... [47.775s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.713s] Building query seed array... [2.392s] Computing hash join... [6.372s] Masking low complexity seeds... [0.232s] Searching alignments... [42.319s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.633s] Building query seed array... [2.125s] Computing hash join... [6.263s] Masking low complexity seeds... [0.261s] Searching alignments... [41.927s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 2/2, index chunk 2/4. Building reference seed array... [13.309s] Building query seed array... [2.441s] Computing hash join... [6.81s] Masking low complexity seeds... [0.212s] Searching alignments... [33.231s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 2/2, index chunk 3/4. Building reference seed array... [14.361s] Building query seed array... [2.568s] Computing hash join... [6.687s] Masking low complexity seeds... [0.208s] Searching alignments... [36.566s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.755s] Building query seed array... [1.997s] Computing hash join... [6.7s] Masking low complexity seeds... [0.212s] Searching alignments... [30.773s] Deallocating memory... [0s] Deallocating buffers... [2.014s] Clearing query masking... [1.659s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [7.446s] Sorting trace points... [1.108s] Computing alignments... [32.353s] Deallocating buffers... [0.015s] Loading trace points... [0.096s] Sorting trace points... [1.158s] Computing alignments... [32.624s] Deallocating buffers... [0.069s] Loading trace points... [0.001s] Sorting trace points... [0.894s] Computing alignments... [32.149s] Deallocating buffers... [0.016s] Loading trace points... [0.072s] Sorting trace points... [1.158s] Computing alignments... [33.309s] Deallocating buffers... [0.017s] Loading trace points... [0.045s] Sorting trace points... [1.326s] Computing alignments... [33.411s] Deallocating buffers... [0.018s] Loading trace points... [0.167s] Sorting trace points... [1.309s] Computing alignments... [34.116s] Deallocating buffers... [0.015s] Loading trace points... [0.241s] Sorting trace points... [1.328s] Computing alignments... [33.316s] Deallocating buffers... [0.014s] Loading trace points... [0.003s] Sorting trace points... [1.286s] Computing alignments... [33.171s] Deallocating buffers... [0.014s] Loading trace points... [0.433s] Sorting trace points... [1.153s] Computing alignments... [33.171s] Deallocating buffers... [0.017s] Loading trace points... [0.282s] Sorting trace points... [0.996s] Computing alignments... [33.078s] Deallocating buffers... [0.016s] Loading trace points... [0.141s] Sorting trace points... [1.27s] Computing alignments... [33.237s] Deallocating buffers... [0.035s] Loading trace points... [0.303s] Sorting trace points... [1.421s] Computing alignments... [32.894s] Deallocating buffers... [0.193s] Loading trace points... [0.152s] Sorting trace points... [1.155s] Computing alignments... [33.245s] Deallocating buffers... [0.017s] Loading trace points... [0.222s] Sorting trace points... [1.328s] Computing alignments... [33.44s] Deallocating buffers... [0.015s] Loading trace points... [0.174s] Sorting trace points... [1.276s] Computing alignments... [33.397s] Deallocating buffers... [0.014s] Loading trace points... [0s] Sorting trace points... [1.3s] Computing alignments... [33.031s] Deallocating buffers... [0.018s] Loading trace points... [0s] [559.958s] Deallocating reference... [0.056s] Loading reference sequences... [56.326s] Masking reference... [30.877s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.007s] Building reference histograms... [33.37s] Allocating buffers... [0s] Processing query block 1, reference block 9/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.417s] Building query seed array... [2.128s] Computing hash join... [7.156s] Masking low complexity seeds... [0.472s] Searching alignments... [131.448s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 1/2, index chunk 2/4. Building reference seed array... [13.271s] Building query seed array... [2.902s] Computing hash join... [6.403s] Masking low complexity seeds... [0.249s] Searching alignments... [71.904s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 1/2, index chunk 3/4. Building reference seed array... [14.048s] Building query seed array... [2.732s] Computing hash join... [6.781s] Masking low complexity seeds... [0.241s] Searching alignments... [57.201s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.695s] Building query seed array... [2.511s] Computing hash join... [6.604s] Masking low complexity seeds... [0.232s] Searching alignments... [47.684s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.506s] Building query seed array... [2.011s] Computing hash join... [6.305s] Masking low complexity seeds... [0.228s] Searching alignments... [42.706s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 2/2, index chunk 2/4. Building reference seed array... [13.017s] Building query seed array... [2.502s] Computing hash join... [6.619s] Masking low complexity seeds... [0.233s] Searching alignments... [34.112s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 2/2, index chunk 3/4. Building reference seed array... [14.304s] Building query seed array... [2.542s] Computing hash join... [6.429s] Masking low complexity seeds... [0.24s] Searching alignments... [38.826s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.64s] Building query seed array... [2.12s] Computing hash join... [6.443s] Masking low complexity seeds... [0.206s] Searching alignments... [32.623s] Deallocating memory... [0s] Deallocating buffers... [2.153s] Clearing query masking... [1.659s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [8.378s] Sorting trace points... [1.365s] Computing alignments... [32.775s] Deallocating buffers... [0.015s] Loading trace points... [0.353s] Sorting trace points... [1.51s] Computing alignments... [33.045s] Deallocating buffers... [0.356s] Loading trace points... [0.097s] Sorting trace points... [1.086s] Computing alignments... [32.269s] Deallocating buffers... [0.015s] Loading trace points... [0.38s] Sorting trace points... [1.06s] Computing alignments... [33.276s] Deallocating buffers... [0.017s] Loading trace points... [0.107s] Sorting trace points... [0.992s] Computing alignments... [33.401s] Deallocating buffers... [0.016s] Loading trace points... [1.317s] Sorting trace points... [1.091s] Computing alignments... [34.018s] Deallocating buffers... [0.017s] Loading trace points... [0.093s] Sorting trace points... [1.067s] Computing alignments... [33.307s] Deallocating buffers... [0.017s] Loading trace points... [0.324s] Sorting trace points... [1.062s] Computing alignments... [33.091s] Deallocating buffers... [0.017s] Loading trace points... [0.335s] Sorting trace points... [1.359s] Computing alignments... [33.366s] Deallocating buffers... [0.163s] Loading trace points... [0.151s] Sorting trace points... [1.223s] Computing alignments... [33.056s] Deallocating buffers... [0.015s] Loading trace points... [0.674s] Sorting trace points... [1.341s] Computing alignments... [33.268s] Deallocating buffers... [0.018s] Loading trace points... [0.29s] Sorting trace points... [1.27s] Computing alignments... [33.573s] Deallocating buffers... [0.014s] Loading trace points... [0.664s] Sorting trace points... [1.339s] Computing alignments... [33.349s] Deallocating buffers... [0.015s] Loading trace points... [0.612s] Sorting trace points... [1.341s] Computing alignments... [33.417s] Deallocating buffers... [0.018s] Loading trace points... [0.117s] Sorting trace points... [1.246s] Computing alignments... [33.415s] Deallocating buffers... [0.015s] Loading trace points... [0s] Sorting trace points... [1.281s] Computing alignments... [33.048s] Deallocating buffers... [0.014s] Loading trace points... [0s] [566.132s] Deallocating reference... [0.057s] Loading reference sequences... [57.813s] Masking reference... [31.039s] Initializing dictionary... [0.077s] Initializing temporary storage... [0.007s] Building reference histograms... [33.11s] Allocating buffers... [0s] Processing query block 1, reference block 10/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.151s] Building query seed array... [2.13s] Computing hash join... [7.29s] Masking low complexity seeds... [0.371s] Searching alignments... [125.175s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.69s] Building query seed array... [3.052s] Computing hash join... [6.195s] Masking low complexity seeds... [0.258s] Searching alignments... [66.969s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.449s] Building query seed array... [2.846s] Computing hash join... [7.313s] Masking low complexity seeds... [0.215s] Searching alignments... [49.884s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.786s] Building query seed array... [2.321s] Computing hash join... [6.375s] Masking low complexity seeds... [0.266s] Searching alignments... [42.109s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.377s] Building query seed array... [2.161s] Computing hash join... [6.512s] Masking low complexity seeds... [0.233s] Searching alignments... [42.135s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.927s] Building query seed array... [2.556s] Computing hash join... [7.063s] Masking low complexity seeds... [0.316s] Searching alignments... [33.304s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.605s] Building query seed array... [2.503s] Computing hash join... [7.089s] Masking low complexity seeds... [0.293s] Searching alignments... [36.551s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.085s] Building query seed array... [2.177s] Computing hash join... [7.07s] Masking low complexity seeds... [0.295s] Searching alignments... [31.267s] Deallocating memory... [0s] Deallocating buffers... [2.025s] Clearing query masking... [1.658s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [7.014s] Sorting trace points... [1.359s] Computing alignments... [32.298s] Deallocating buffers... [0.014s] Loading trace points... [0.167s] Sorting trace points... [1.088s] Computing alignments... [32.512s] Deallocating buffers... [0.019s] Loading trace points... [0.088s] Sorting trace points... [1.226s] Computing alignments... [32.203s] Deallocating buffers... [0.017s] Loading trace points... [0.091s] Sorting trace points... [1.155s] Computing alignments... [33.373s] Deallocating buffers... [0.015s] Loading trace points... [0.062s] Sorting trace points... [1.273s] Computing alignments... [34.017s] Deallocating buffers... [0.018s] Loading trace points... [0.055s] Sorting trace points... [1.288s] Computing alignments... [33.998s] Deallocating buffers... [0.015s] Loading trace points... [0.509s] Sorting trace points... [1.357s] Computing alignments... [33.334s] Deallocating buffers... [0.015s] Loading trace points... [0.097s] Sorting trace points... [1.037s] Computing alignments... [33.006s] Deallocating buffers... [0.017s] Loading trace points... [0.105s] Sorting trace points... [1.273s] Computing alignments... [33.157s] Deallocating buffers... [0.015s] Loading trace points... [0.065s] Sorting trace points... [1.002s] Computing alignments... [32.974s] Deallocating buffers... [0.016s] Loading trace points... [0.045s] Sorting trace points... [1.308s] Computing alignments... [33.228s] Deallocating buffers... [0.052s] Loading trace points... [0.095s] Sorting trace points... [1.339s] Computing alignments... [32.849s] Deallocating buffers... [0.082s] Loading trace points... [0.044s] Sorting trace points... [1.023s] Computing alignments... [33.177s] Deallocating buffers... [0.015s] Loading trace points... [0.188s] Sorting trace points... [1.295s] Computing alignments... [33.421s] Deallocating buffers... [0.015s] Loading trace points... [0.088s] Sorting trace points... [0.953s] Computing alignments... [33.259s] Deallocating buffers... [0.016s] Loading trace points... [0s] Sorting trace points... [1.299s] Computing alignments... [33.015s] Deallocating buffers... [0.015s] Loading trace points... [0s] [558.372s] Deallocating reference... [0.06s] Loading reference sequences... [29.895s] Masking reference... [30.886s] Initializing dictionary... [0.077s] Initializing temporary storage... [0.007s] Building reference histograms... [32.372s] Allocating buffers... [0.001s] Processing query block 1, reference block 11/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.527s] Building query seed array... [2.14s] Computing hash join... [6.44s] Masking low complexity seeds... [0.22s] Searching alignments... [84.509s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 1/2, index chunk 2/4. Building reference seed array... [13.207s] Building query seed array... [3.064s] Computing hash join... [7.204s] Masking low complexity seeds... [0.241s] Searching alignments... [62.254s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 1/2, index chunk 3/4. Building reference seed array... [14.063s] Building query seed array... [2.766s] Computing hash join... [6.595s] Masking low complexity seeds... [0.216s] Searching alignments... [47.568s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.359s] Building query seed array... [2.29s] Computing hash join... [6.856s] Masking low complexity seeds... [0.263s] Searching alignments... [39.486s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.291s] Building query seed array... [2.136s] Computing hash join... [6.927s] Masking low complexity seeds... [0.229s] Searching alignments... [40.353s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.676s] Building query seed array... [2.334s] Computing hash join... [7.026s] Masking low complexity seeds... [0.322s] Searching alignments... [32.484s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.776s] Building query seed array... [2.589s] Computing hash join... [7.171s] Masking low complexity seeds... [0.291s] Searching alignments... [35.828s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.254s] Building query seed array... [2.053s] Computing hash join... [7.151s] Masking low complexity seeds... [0.31s] Searching alignments... [31.061s] Deallocating memory... [0s] Deallocating buffers... [2.095s] Clearing query masking... [1.664s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [7.252s] Sorting trace points... [1.316s] Computing alignments... [32.488s] Deallocating buffers... [0.017s] Loading trace points... [0.075s] Sorting trace points... [1.277s] Computing alignments... [32.863s] Deallocating buffers... [0.231s] Loading trace points... [0.101s] Sorting trace points... [1.252s] Computing alignments... [32.319s] Deallocating buffers... [0.014s] Loading trace points... [0.059s] Sorting trace points... [1.25s] Computing alignments... [33.53s] Deallocating buffers... [0.014s] Loading trace points... [0s] Sorting trace points... [0.92s] Computing alignments... [33.721s] Deallocating buffers... [0.016s] Loading trace points... [0.051s] Sorting trace points... [1.396s] Computing alignments... [34.319s] Deallocating buffers... [0.204s] Loading trace points... [0.092s] Sorting trace points... [1.273s] Computing alignments... [33.493s] Deallocating buffers... [0.018s] Loading trace points... [0.053s] Sorting trace points... [1.257s] Computing alignments... [33.316s] Deallocating buffers... [0.014s] Loading trace points... [0.069s] Sorting trace points... [1.278s] Computing alignments... [33.37s] Deallocating buffers... [0.014s] Loading trace points... [0.138s] Sorting trace points... [1.315s] Computing alignments... [33.083s] Deallocating buffers... [0.015s] Loading trace points... [0.062s] Sorting trace points... [1.269s] Computing alignments... [33.317s] Deallocating buffers... [0.015s] Loading trace points... [0.091s] Sorting trace points... [1.239s] Computing alignments... [32.832s] Deallocating buffers... [0.014s] Loading trace points... [0.119s] Sorting trace points... [1.26s] Computing alignments... [33.38s] Deallocating buffers... [0.015s] Loading trace points... [0.085s] Sorting trace points... [1.467s] Computing alignments... [33.883s] Deallocating buffers... [0.281s] Loading trace points... [0.001s] Sorting trace points... [1.141s] Computing alignments... [33.453s] Deallocating buffers... [0.015s] Loading trace points... [0s] Sorting trace points... [1.257s] Computing alignments... [33.056s] Deallocating buffers... [0.014s] Loading trace points... [0s] [561.961s] Deallocating reference... [0.067s] Loading reference sequences... [39.288s] Masking reference... [31.348s] Initializing dictionary... [0.077s] Initializing temporary storage... [0.007s] Building reference histograms... [33.162s] Allocating buffers... [0s] Processing query block 1, reference block 12/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.71s] Building query seed array... [2.161s] Computing hash join... [7.081s] Masking low complexity seeds... [0.57s] Searching alignments... [88.783s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.605s] Building query seed array... [3.159s] Computing hash join... [6.378s] Masking low complexity seeds... [0.252s] Searching alignments... [60.298s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.82s] Building query seed array... [2.932s] Computing hash join... [6.886s] Masking low complexity seeds... [0.335s] Searching alignments... [46.52s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.6s] Building query seed array... [2.292s] Computing hash join... [6.467s] Masking low complexity seeds... [0.222s] Searching alignments... [40.566s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.869s] Building query seed array... [2.258s] Computing hash join... [6.084s] Masking low complexity seeds... [0.215s] Searching alignments... [41.207s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.967s] Building query seed array... [2.425s] Computing hash join... [6.352s] Masking low complexity seeds... [0.225s] Searching alignments... [32.95s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.615s] Building query seed array... [2.676s] Computing hash join... [6.191s] Masking low complexity seeds... [0.254s] Searching alignments... [36.463s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.828s] Building query seed array... [2.232s] Computing hash join... [6.147s] Masking low complexity seeds... [0.22s] Searching alignments... [31.094s] Deallocating memory... [0s] Deallocating buffers... [2.005s] Clearing query masking... [1.64s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [6.907s] Sorting trace points... [1.314s] Computing alignments... [32.515s] Deallocating buffers... [0.017s] Loading trace points... [0.065s] Sorting trace points... [0.967s] Computing alignments... [32.646s] Deallocating buffers... [0.018s] Loading trace points... [0.001s] Sorting trace points... [0.954s] Computing alignments... [32.307s] Deallocating buffers... [0.015s] Loading trace points... [0.073s] Sorting trace points... [1.301s] Computing alignments... [33.378s] Deallocating buffers... [0.015s] Loading trace points... [0.078s] Sorting trace points... [1.294s] Computing alignments... [33.458s] Deallocating buffers... [0.014s] Loading trace points... [0.06s] Sorting trace points... [1.001s] Computing alignments... [33.953s] Deallocating buffers... [0.017s] Loading trace points... [0.354s] Sorting trace points... [1.287s] Computing alignments... [33.432s] Deallocating buffers... [0.018s] Loading trace points... [0s] Sorting trace points... [0.912s] Computing alignments... [33.062s] Deallocating buffers... [0.016s] Loading trace points... [0.084s] Sorting trace points... [1.187s] Computing alignments... [33.168s] Deallocating buffers... [0.015s] Loading trace points... [0.001s] Sorting trace points... [1.392s] Computing alignments... [33.218s] Deallocating buffers... [0.13s] Loading trace points... [0.055s] Sorting trace points... [1.118s] Computing alignments... [33.373s] Deallocating buffers... [0.017s] Loading trace points... [0.003s] Sorting trace points... [1.276s] Computing alignments... [32.926s] Deallocating buffers... [0.015s] Loading trace points... [0.065s] Sorting trace points... [1.268s] Computing alignments... [33.475s] Deallocating buffers... [0.014s] Loading trace points... [0.001s] Sorting trace points... [1.471s] Computing alignments... [33.85s] Deallocating buffers... [0.253s] Loading trace points... [0.065s] Sorting trace points... [1.285s] Computing alignments... [33.476s] Deallocating buffers... [0.015s] Loading trace points... [0s] Sorting trace points... [1.262s] Computing alignments... [33.182s] Deallocating buffers... [0.015s] Loading trace points... [0s] [559.396s] Deallocating reference... [0.188s] Loading reference sequences... [29.959s] Masking reference... [30.887s] Initializing dictionary... [0.079s] Initializing temporary storage... [0.008s] Building reference histograms... [32.93s] Allocating buffers... [0s] Processing query block 1, reference block 13/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.608s] Building query seed array... [2.155s] Computing hash join... [7.031s] Masking low complexity seeds... [0.325s] Searching alignments... [84.884s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.604s] Building query seed array... [2.866s] Computing hash join... [7.208s] Masking low complexity seeds... [0.292s] Searching alignments... [60.536s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.702s] Building query seed array... [2.775s] Computing hash join... [7.304s] Masking low complexity seeds... [0.259s] Searching alignments... [45.563s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 1/2, index chunk 4/4. Building reference seed array... [11.03s] Building query seed array... [2.347s] Computing hash join... [6.326s] Masking low complexity seeds... [0.232s] Searching alignments... [40.908s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.521s] Building query seed array... [2.256s] Computing hash join... [6.208s] Masking low complexity seeds... [0.228s] Searching alignments... [41.043s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.907s] Building query seed array... [2.439s] Computing hash join... [6.516s] Masking low complexity seeds... [0.228s] Searching alignments... [33.148s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.782s] Building query seed array... [2.655s] Computing hash join... [6.422s] Masking low complexity seeds... [0.229s] Searching alignments... [36.748s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.605s] Building query seed array... [2.206s] Computing hash join... [6.326s] Masking low complexity seeds... [0.208s] Searching alignments... [30.781s] Deallocating memory... [0s] Deallocating buffers... [2.198s] Clearing query masking... [1.646s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [6.6s] Sorting trace points... [1.339s] Computing alignments... [32.372s] Deallocating buffers... [0.015s] Loading trace points... [0.091s] Sorting trace points... [1.409s] Computing alignments... [32.534s] Deallocating buffers... [0.072s] Loading trace points... [0.082s] Sorting trace points... [1.292s] Computing alignments... [32.376s] Deallocating buffers... [0.014s] Loading trace points... [0.057s] Sorting trace points... [1.32s] Computing alignments... [33.464s] Deallocating buffers... [0.057s] Loading trace points... [0.065s] Sorting trace points... [1.294s] Computing alignments... [33.575s] Deallocating buffers... [0.015s] Loading trace points... [0.052s] Sorting trace points... [1.354s] Computing alignments... [34.189s] Deallocating buffers... [0.018s] Loading trace points... [0.107s] Sorting trace points... [1.287s] Computing alignments... [33.34s] Deallocating buffers... [0.018s] Loading trace points... [0.189s] Sorting trace points... [1.373s] Computing alignments... [33.362s] Deallocating buffers... [0.16s] Loading trace points... [0.085s] Sorting trace points... [1.144s] Computing alignments... [33.365s] Deallocating buffers... [0.017s] Loading trace points... [0.107s] Sorting trace points... [1.479s] Computing alignments... [33.117s] Deallocating buffers... [0.109s] Loading trace points... [0.084s] Sorting trace points... [1.216s] Computing alignments... [33.438s] Deallocating buffers... [0.015s] Loading trace points... [0.129s] Sorting trace points... [1.284s] Computing alignments... [33.03s] Deallocating buffers... [0.014s] Loading trace points... [0.052s] Sorting trace points... [1.271s] Computing alignments... [33.326s] Deallocating buffers... [0.018s] Loading trace points... [0.079s] Sorting trace points... [1.357s] Computing alignments... [33.603s] Deallocating buffers... [0.015s] Loading trace points... [0.06s] Sorting trace points... [1.279s] Computing alignments... [33.529s] Deallocating buffers... [0.198s] Loading trace points... [0s] Sorting trace points... [1.312s] Computing alignments... [33.092s] Deallocating buffers... [0.017s] Loading trace points... [0s] [561.563s] Deallocating reference... [0.054s] Loading reference sequences... [24.263s] Masking reference... [26.054s] Initializing dictionary... [0.062s] Initializing temporary storage... [0.009s] Building reference histograms... [26.978s] Allocating buffers... [0s] Processing query block 1, reference block 14/14, shape 1/2, index chunk 1/4. Building reference seed array... [8.36s] Building query seed array... [2.121s] Computing hash join... [4.902s] Masking low complexity seeds... [0.214s] Searching alignments... [69.108s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 1/2, index chunk 2/4. Building reference seed array... [10.516s] Building query seed array... [2.939s] Computing hash join... [4.805s] Masking low complexity seeds... [0.234s] Searching alignments... [49.12s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 1/2, index chunk 3/4. Building reference seed array... [11.159s] Building query seed array... [2.822s] Computing hash join... [4.914s] Masking low complexity seeds... [0.208s] Searching alignments... [37.528s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 1/2, index chunk 4/4. Building reference seed array... [8.469s] Building query seed array... [2.298s] Computing hash join... [5.173s] Masking low complexity seeds... [0.255s] Searching alignments... [32.701s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 2/2, index chunk 1/4. Building reference seed array... [8.19s] Building query seed array... [2.134s] Computing hash join... [4.766s] Masking low complexity seeds... [0.21s] Searching alignments... [33.284s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 2/2, index chunk 2/4. Building reference seed array... [10.434s] Building query seed array... [2.411s] Computing hash join... [4.69s] Masking low complexity seeds... [0.196s] Searching alignments... [27.413s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 2/2, index chunk 3/4. Building reference seed array... [11.251s] Building query seed array... [2.553s] Computing hash join... [4.886s] Masking low complexity seeds... [0.195s] Searching alignments... [31.455s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 2/2, index chunk 4/4. Building reference seed array... [8.392s] Building query seed array... [2.1s] Computing hash join... [4.695s] Masking low complexity seeds... [0.194s] Searching alignments... [24.922s] Deallocating memory... [0s] Deallocating buffers... [1.23s] Clearing query masking... [1.578s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [11.229s] Sorting trace points... [2.206s] Computing alignments... [51.884s] Deallocating buffers... [0.023s] Loading trace points... [0.064s] Sorting trace points... [1.65s] Computing alignments... [52.136s] Deallocating buffers... [0.025s] Loading trace points... [0.266s] Sorting trace points... [1.638s] Computing alignments... [53.753s] Deallocating buffers... [0.026s] Loading trace points... [0.27s] Sorting trace points... [2.44s] Computing alignments... [52.774s] Deallocating buffers... [0.276s] Loading trace points... [0.319s] Sorting trace points... [1.736s] Computing alignments... [52.631s] Deallocating buffers... [0.026s] Loading trace points... [0.196s] Sorting trace points... [2.035s] Computing alignments... [52.489s] Deallocating buffers... [0.061s] Loading trace points... [0.295s] Sorting trace points... [2.042s] Computing alignments... [52.908s] Deallocating buffers... [0.024s] Loading trace points... [0s] Sorting trace points... [2.052s] Computing alignments... [52.35s] Deallocating buffers... [0.028s] Loading trace points... [0s] [450.033s] Deallocating reference... [0.059s] Loading reference sequences... [0.126s] Deallocating buffers... [0s] Joining output blocks... Joining output blocks... [2276.25s] [2276.25s] Deallocating queries... [0.077s] Loading query sequences... [0s] Closing the input file... [0s] Closing the output file... Loading dictionary... [3.98s] [5.451s] Closing the database... [0s] Cleaning up... [0s] Total time = 19198.4s Reported 2378030784 pairwise alignments, 2378030784 HSPs. 13487369 queries aligned. DIAMOND BLASTx on /gscratch/srlab/sam/data/P_verrucosa/RNAseq/C19_R1.fastp-trim.20230215.fq.gz complete: C19_R1.blastx.meganized.daa Now MEGANizing C19_R1.blastx.meganized.daa Version MEGAN Community Edition (version 6.22.0, built 19 Feb 2022) Author(s) Daniel H. Huson Copyright (C) 2022 Daniel H. Huson. This program comes with ABSOLUTELY NO WARRANTY. Java version: 17.0.2 Functional classifications to use: EC, EGGNOG, GTDB, INTERPRO2GO, SEED Loading ncbi.map: 2,396,736 Loading ncbi.tre: 2,396,740 Loading ec.map: 8,200 Loading ec.tre: 8,204 Loading eggnog.map: 30,875 Loading eggnog.tre: 30,986 Loading gtdb.map: 240,103 Loading gtdb.tre: 240,107 Loading interpro2go.map: 14,242 Loading interpro2go.tre: 28,907 Loading seed.map: 961 Loading seed.tre: 962 Meganizing: C19_R1.blastx.meganized.daa Meganizing init Annotating DAA file using FAST mode (accession database and first accession per line) Annotating references 10% 20% 30% 40% 50% 60% 70% 100% (485.6s) Writing 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (1.6s) Binning reads Initializing... Initializing binning... Using 'Naive LCA' algorithm for binning: Taxonomy Using Best-Hit algorithm for binning: SEED Using Best-Hit algorithm for binning: EGGNOG Using 'Naive LCA' algorithm for binning: GTDB Using Best-Hit algorithm for binning: EC Using Best-Hit algorithm for binning: INTERPRO2GO Binning reads... Binning reads Analyzing alignments 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (4,378.7s) Total reads: 13,487,369 With hits: 13,487,369 Alignments: 2,366,362,471 Assig. Taxonomy: 12,707,420 Assig. SEED: 104,908 Assig. EGGNOG: 47,010 Assig. GTDB: 354,000 Assig. EC: 2,121,656 Assig. INTERPRO2GO: 1,132,926 MinSupport set to: 6743 Binning reads Applying min-support & disabled filter to Taxonomy... 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (0.3s) Min-supp. changes: 3,603 Binning reads Applying min-support & disabled filter to GTDB... 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (9.4s) Min-supp. changes: 2,693 Binning reads Writing classification tables 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (29.7s) Binning reads Syncing 100% (0.3s) Class. Taxonomy: 72 Class. SEED: 485 Class. EGGNOG: 1,712 Class. GTDB: 17 Class. EC: 2,337 Class. INTERPRO2GO: 7,968 Total time: 4,914s Peak memory: 34.8 of 195.3G MEGANization of C19_R1.blastx.meganized.daa completed. Generating MD5 checksum for /gscratch/srlab/sam/data/P_verrucosa/RNAseq/C19_R2.fastp-trim.20230215.fq.gz... 1c30e365dc345887ae4103c63d265ae1 /gscratch/srlab/sam/data/P_verrucosa/RNAseq/C19_R2.fastp-trim.20230215.fq.gz Running DIAMOND BLASTx on /gscratch/srlab/sam/data/P_verrucosa/RNAseq/C19_R2.fastp-trim.20230215.fq.gz. diamond v2.1.1.155 (C) Max Planck Society for the Advancement of Science Documentation, support and updates available at http://www.diamondsearch.org Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021) #CPU threads: 40 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: Percentage range of top alignment score to report hits: 5 Opening the database... [0.297s] Database: /gscratch/srlab/blastdbs/20230215-ncbi-nr/20230215-ncbi-nr.dmnd (type: Diamond database, sequences: 526308523, letters: 207134680681) Block size = 15000000000 Opening the input file... [0.743s] Opening the output file... [0s] Loading query sequences... [77.644s] Masking queries... [19.388s] Algorithm: Double-indexed Building query histograms... [18.05s] Loading reference sequences... [29.755s] Masking reference... [30.843s] Initializing dictionary... [0.079s] Initializing temporary storage... [0.008s] Building reference histograms... [32.288s] Allocating buffers... [0s] Processing query block 1, reference block 1/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.716s] Building query seed array... [2.179s] Computing hash join... [6.665s] Masking low complexity seeds... [0.262s] Searching alignments... [80.958s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.757s] Building query seed array... [2.918s] Computing hash join... [7.073s] Masking low complexity seeds... [0.325s] Searching alignments... [56.559s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.425s] Building query seed array... [2.74s] Computing hash join... [6.846s] Masking low complexity seeds... [0.366s] Searching alignments... [45.686s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.048s] Building query seed array... [2.196s] Computing hash join... [6.487s] Masking low complexity seeds... [0.259s] Searching alignments... [40.547s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.73s] Building query seed array... [2.043s] Computing hash join... [6.149s] Masking low complexity seeds... [0.255s] Searching alignments... [44.916s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.723s] Building query seed array... [2.459s] Computing hash join... [6.494s] Masking low complexity seeds... [0.27s] Searching alignments... [33.434s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.748s] Building query seed array... [2.392s] Computing hash join... [6.663s] Masking low complexity seeds... [0.281s] Searching alignments... [38.087s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.221s] Building query seed array... [2.041s] Computing hash join... [6.501s] Masking low complexity seeds... [0.237s] Searching alignments... [31.358s] Deallocating memory... [0s] Deallocating buffers... [1.314s] Clearing query masking... [1.723s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [6.639s] Sorting trace points... [1.34s] Computing alignments... [32.481s] Deallocating buffers... [0.016s] Loading trace points... [0s] Sorting trace points... [0.912s] Computing alignments... [32.318s] Deallocating buffers... [0.016s] Loading trace points... [0.08s] Sorting trace points... [1.068s] Computing alignments... [31.955s] Deallocating buffers... [0.014s] Loading trace points... [0.07s] Sorting trace points... [1.096s] Computing alignments... [33.06s] Deallocating buffers... [0.017s] Loading trace points... [0.073s] Sorting trace points... [1.309s] Computing alignments... [33.73s] Deallocating buffers... [0.018s] Loading trace points... [0.1s] Sorting trace points... [0.984s] Computing alignments... [33.836s] Deallocating buffers... [0.016s] Loading trace points... [0.044s] Sorting trace points... [1.277s] Computing alignments... [32.934s] Deallocating buffers... [0.017s] Loading trace points... [0.071s] Sorting trace points... [0.972s] Computing alignments... [33.021s] Deallocating buffers... [0.016s] Loading trace points... [0.065s] Sorting trace points... [1.274s] Computing alignments... [33.42s] Deallocating buffers... [0.018s] Loading trace points... [0.051s] Sorting trace points... [1.303s] Computing alignments... [34.052s] Deallocating buffers... [0.018s] Loading trace points... [0.061s] Sorting trace points... [1.293s] Computing alignments... [34.176s] Deallocating buffers... [0.015s] Loading trace points... [0.067s] Sorting trace points... [1.189s] Computing alignments... [33.812s] Deallocating buffers... [0.015s] Loading trace points... [1.143s] Sorting trace points... [1.197s] Computing alignments... [34.371s] Deallocating buffers... [0.017s] Loading trace points... [0.079s] Sorting trace points... [1.358s] Computing alignments... [34.5s] Deallocating buffers... [0.015s] Loading trace points... [0.067s] Sorting trace points... [1.338s] Computing alignments... [34.31s] Deallocating buffers... [0.015s] Loading trace points... [0s] Sorting trace points... [0.961s] Computing alignments... [33.845s] Deallocating buffers... [0.016s] Loading trace points... [0s] [563.666s] Deallocating reference... [0.06s] Loading reference sequences... [29.243s] Masking reference... [32.213s] Initializing dictionary... [0.077s] Initializing temporary storage... [0.007s] Building reference histograms... [32.043s] Allocating buffers... [0.001s] Processing query block 1, reference block 2/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.232s] Building query seed array... [2.175s] Computing hash join... [6.417s] Masking low complexity seeds... [0.274s] Searching alignments... [79.586s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 1/2, index chunk 2/4. Building reference seed array... [13.336s] Building query seed array... [3.181s] Computing hash join... [6.516s] Masking low complexity seeds... [0.32s] Searching alignments... [57.709s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.881s] Building query seed array... [2.887s] Computing hash join... [6.872s] Masking low complexity seeds... [0.408s] Searching alignments... [44.719s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.391s] Building query seed array... [2.363s] Computing hash join... [6.33s] Masking low complexity seeds... [0.254s] Searching alignments... [40.358s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.507s] Building query seed array... [2.049s] Computing hash join... [6.166s] Masking low complexity seeds... [0.266s] Searching alignments... [43.336s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.633s] Building query seed array... [2.448s] Computing hash join... [6.511s] Masking low complexity seeds... [0.259s] Searching alignments... [33.278s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.571s] Building query seed array... [2.571s] Computing hash join... [6.346s] Masking low complexity seeds... [0.275s] Searching alignments... [37.618s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.276s] Building query seed array... [2.138s] Computing hash join... [6.382s] Masking low complexity seeds... [0.28s] Searching alignments... [30.411s] Deallocating memory... [0s] Deallocating buffers... [1.511s] Clearing query masking... [1.616s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [6.732s] Sorting trace points... [1.342s] Computing alignments... [32.679s] Deallocating buffers... [0.016s] Loading trace points... [0.055s] Sorting trace points... [1.271s] Computing alignments... [32.395s] Deallocating buffers... [0.02s] Loading trace points... [0.044s] Sorting trace points... [1.24s] Computing alignments... [31.979s] Deallocating buffers... [0.014s] Loading trace points... [0.045s] Sorting trace points... [1.241s] Computing alignments... [33.13s] Deallocating buffers... [0.015s] Loading trace points... [0.077s] Sorting trace points... [1.207s] Computing alignments... [33.967s] Deallocating buffers... [0.015s] Loading trace points... [0.042s] Sorting trace points... [0.92s] Computing alignments... [34.303s] Deallocating buffers... [0.024s] Loading trace points... [0.052s] Sorting trace points... [1.223s] Computing alignments... [33.013s] Deallocating buffers... [0.017s] Loading trace points... [0s] Sorting trace points... [0.887s] Computing alignments... [33.333s] Deallocating buffers... [0.016s] Loading trace points... [0.085s] Sorting trace points... [1.192s] Computing alignments... [33.356s] Deallocating buffers... [0.017s] Loading trace points... [0.084s] Sorting trace points... [1.351s] Computing alignments... [33.948s] Deallocating buffers... [0.018s] Loading trace points... [0.069s] Sorting trace points... [1.355s] Computing alignments... [34.581s] Deallocating buffers... [0.023s] Loading trace points... [0.07s] Sorting trace points... [1.045s] Computing alignments... [33.697s] Deallocating buffers... [0.016s] Loading trace points... [0.056s] Sorting trace points... [1.329s] Computing alignments... [34.362s] Deallocating buffers... [0.018s] Loading trace points... [0.001s] Sorting trace points... [1.391s] Computing alignments... [34.563s] Deallocating buffers... [0.041s] Loading trace points... [0.065s] Sorting trace points... [0.992s] Computing alignments... [34.299s] Deallocating buffers... [0.017s] Loading trace points... [0s] Sorting trace points... [0.95s] Computing alignments... [33.884s] Deallocating buffers... [0.017s] Loading trace points... [0s] [564.272s] Deallocating reference... [0.056s] Loading reference sequences... [29.237s] Masking reference... [32.173s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.008s] Building reference histograms... [32.586s] Allocating buffers... [0.001s] Processing query block 1, reference block 3/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.435s] Building query seed array... [2.145s] Computing hash join... [6.655s] Masking low complexity seeds... [0.528s] Searching alignments... [83.048s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.823s] Building query seed array... [3.018s] Computing hash join... [6.861s] Masking low complexity seeds... [0.795s] Searching alignments... [63.162s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 1/2, index chunk 3/4. Building reference seed array... [14.039s] Building query seed array... [2.764s] Computing hash join... [6.229s] Masking low complexity seeds... [0.293s] Searching alignments... [53.655s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.382s] Building query seed array... [2.342s] Computing hash join... [6.399s] Masking low complexity seeds... [0.258s] Searching alignments... [45.935s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.396s] Building query seed array... [2.148s] Computing hash join... [6.54s] Masking low complexity seeds... [0.254s] Searching alignments... [46.581s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.643s] Building query seed array... [2.501s] Computing hash join... [6.223s] Masking low complexity seeds... [0.252s] Searching alignments... [34.466s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.681s] Building query seed array... [2.519s] Computing hash join... [6.211s] Masking low complexity seeds... [0.27s] Searching alignments... [40.551s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.442s] Building query seed array... [2.153s] Computing hash join... [6.331s] Masking low complexity seeds... [0.27s] Searching alignments... [33.193s] Deallocating memory... [0s] Deallocating buffers... [1.686s] Clearing query masking... [1.634s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [9.329s] Sorting trace points... [1.339s] Computing alignments... [32.661s] Deallocating buffers... [0.015s] Loading trace points... [0.245s] Sorting trace points... [1.303s] Computing alignments... [32.765s] Deallocating buffers... [0.13s] Loading trace points... [0.106s] Sorting trace points... [0.957s] Computing alignments... [32.267s] Deallocating buffers... [0.016s] Loading trace points... [0.069s] Sorting trace points... [1.078s] Computing alignments... [33.264s] Deallocating buffers... [0.015s] Loading trace points... [0.508s] Sorting trace points... [1.101s] Computing alignments... [33.91s] Deallocating buffers... [0.017s] Loading trace points... [0.21s] Sorting trace points... [0.969s] Computing alignments... [34.426s] Deallocating buffers... [0.016s] Loading trace points... [0.074s] Sorting trace points... [0.886s] Computing alignments... [33.283s] Deallocating buffers... [0.016s] Loading trace points... [0.116s] Sorting trace points... [1.146s] Computing alignments... [33.382s] Deallocating buffers... [0.017s] Loading trace points... [0.124s] Sorting trace points... [1.286s] Computing alignments... [33.454s] Deallocating buffers... [0.015s] Loading trace points... [0.108s] Sorting trace points... [1.289s] Computing alignments... [34.103s] Deallocating buffers... [0.018s] Loading trace points... [0.226s] Sorting trace points... [1.067s] Computing alignments... [34.211s] Deallocating buffers... [0.016s] Loading trace points... [0.067s] Sorting trace points... [1.101s] Computing alignments... [33.858s] Deallocating buffers... [0.017s] Loading trace points... [0.576s] Sorting trace points... [1.329s] Computing alignments... [34.37s] Deallocating buffers... [0.015s] Loading trace points... [0.066s] Sorting trace points... [1.249s] Computing alignments... [34.667s] Deallocating buffers... [0.015s] Loading trace points... [0.101s] Sorting trace points... [1.295s] Computing alignments... [34.313s] Deallocating buffers... [0.015s] Loading trace points... [0s] Sorting trace points... [1.342s] Computing alignments... [34.057s] Deallocating buffers... [0.018s] Loading trace points... [0s] [570.122s] Deallocating reference... [0.066s] Loading reference sequences... [53.104s] Masking reference... [30.892s] Initializing dictionary... [0.079s] Initializing temporary storage... [0.007s] Building reference histograms... [32.82s] Allocating buffers... [0s] Processing query block 1, reference block 4/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.463s] Building query seed array... [2.149s] Computing hash join... [6.878s] Masking low complexity seeds... [0.506s] Searching alignments... [112.928s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.545s] Building query seed array... [2.919s] Computing hash join... [6.385s] Masking low complexity seeds... [0.28s] Searching alignments... [69.225s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.615s] Building query seed array... [2.701s] Computing hash join... [6.083s] Masking low complexity seeds... [0.283s] Searching alignments... [50.696s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.894s] Building query seed array... [2.294s] Computing hash join... [6.108s] Masking low complexity seeds... [0.251s] Searching alignments... [43.664s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.577s] Building query seed array... [2.124s] Computing hash join... [6.069s] Masking low complexity seeds... [0.299s] Searching alignments... [44.251s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.772s] Building query seed array... [2.356s] Computing hash join... [6.624s] Masking low complexity seeds... [0.312s] Searching alignments... [33.203s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.925s] Building query seed array... [2.541s] Computing hash join... [7.012s] Masking low complexity seeds... [0.329s] Searching alignments... [37.745s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.601s] Building query seed array... [2.27s] Computing hash join... [6.655s] Masking low complexity seeds... [0.26s] Searching alignments... [31.512s] Deallocating memory... [0s] Deallocating buffers... [1.993s] Clearing query masking... [1.62s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [7.945s] Sorting trace points... [2.087s] Computing alignments... [32.546s] Deallocating buffers... [0.017s] Loading trace points... [0.085s] Sorting trace points... [1.076s] Computing alignments... [32.288s] Deallocating buffers... [0.017s] Loading trace points... [0.13s] Sorting trace points... [0.85s] Computing alignments... [31.938s] Deallocating buffers... [0.016s] Loading trace points... [0.093s] Sorting trace points... [1.174s] Computing alignments... [33.007s] Deallocating buffers... [0.017s] Loading trace points... [0.097s] Sorting trace points... [1.294s] Computing alignments... [33.602s] Deallocating buffers... [0.014s] Loading trace points... [0.151s] Sorting trace points... [1.305s] Computing alignments... [34.1s] Deallocating buffers... [0.017s] Loading trace points... [0.065s] Sorting trace points... [1.245s] Computing alignments... [33.137s] Deallocating buffers... [0.018s] Loading trace points... [0.067s] Sorting trace points... [1.405s] Computing alignments... [33.05s] Deallocating buffers... [0.215s] Loading trace points... [0.093s] Sorting trace points... [0.98s] Computing alignments... [33.401s] Deallocating buffers... [0.018s] Loading trace points... [0.066s] Sorting trace points... [1.3s] Computing alignments... [34.009s] Deallocating buffers... [0.018s] Loading trace points... [0.072s] Sorting trace points... [1.214s] Computing alignments... [34.227s] Deallocating buffers... [0.019s] Loading trace points... [0.072s] Sorting trace points... [1.248s] Computing alignments... [33.65s] Deallocating buffers... [0.015s] Loading trace points... [0.086s] Sorting trace points... [1.32s] Computing alignments... [34.248s] Deallocating buffers... [0.034s] Loading trace points... [0.068s] Sorting trace points... [1.027s] Computing alignments... [34.348s] Deallocating buffers... [0.016s] Loading trace points... [0.093s] Sorting trace points... [1.193s] Computing alignments... [34.169s] Deallocating buffers... [0.016s] Loading trace points... [0s] Sorting trace points... [1.345s] Computing alignments... [33.87s] Deallocating buffers... [0.016s] Loading trace points... [0s] [565.443s] Deallocating reference... [0.058s] Loading reference sequences... [326.826s] Masking reference... [31.197s] Initializing dictionary... [0.077s] Initializing temporary storage... [0.007s] Building reference histograms... [32.908s] Allocating buffers... [0s] Processing query block 1, reference block 5/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.72s] Building query seed array... [2.152s] Computing hash join... [7.072s] Masking low complexity seeds... [0.524s] Searching alignments... [82.232s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 1/2, index chunk 2/4. Building reference seed array... [13.11s] Building query seed array... [2.871s] Computing hash join... [6.884s] Masking low complexity seeds... [0.414s] Searching alignments... [57.525s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.877s] Building query seed array... [2.887s] Computing hash join... [7.131s] Masking low complexity seeds... [0.367s] Searching alignments... [44.63s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.822s] Building query seed array... [2.291s] Computing hash join... [6.318s] Masking low complexity seeds... [0.252s] Searching alignments... [40.84s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.266s] Building query seed array... [2.268s] Computing hash join... [6.297s] Masking low complexity seeds... [0.263s] Searching alignments... [44.913s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.391s] Building query seed array... [2.39s] Computing hash join... [6.66s] Masking low complexity seeds... [0.246s] Searching alignments... [32.814s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.452s] Building query seed array... [2.557s] Computing hash join... [6.509s] Masking low complexity seeds... [0.235s] Searching alignments... [38.296s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.217s] Building query seed array... [2.127s] Computing hash join... [6.424s] Masking low complexity seeds... [0.252s] Searching alignments... [30.516s] Deallocating memory... [0s] Deallocating buffers... [1.839s] Clearing query masking... [1.645s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [6.629s] Sorting trace points... [1.358s] Computing alignments... [32.065s] Deallocating buffers... [0.017s] Loading trace points... [0.063s] Sorting trace points... [1.259s] Computing alignments... [32.224s] Deallocating buffers... [0.016s] Loading trace points... [0.053s] Sorting trace points... [1.242s] Computing alignments... [31.95s] Deallocating buffers... [0.014s] Loading trace points... [0.057s] Sorting trace points... [0.92s] Computing alignments... [32.997s] Deallocating buffers... [0.016s] Loading trace points... [0.066s] Sorting trace points... [1.321s] Computing alignments... [33.639s] Deallocating buffers... [0.015s] Loading trace points... [0.064s] Sorting trace points... [1.299s] Computing alignments... [33.824s] Deallocating buffers... [0.018s] Loading trace points... [0.034s] Sorting trace points... [1.273s] Computing alignments... [32.818s] Deallocating buffers... [0.047s] Loading trace points... [0.062s] Sorting trace points... [0.895s] Computing alignments... [32.953s] Deallocating buffers... [0.016s] Loading trace points... [0.093s] Sorting trace points... [1.276s] Computing alignments... [33.228s] Deallocating buffers... [0.015s] Loading trace points... [0.001s] Sorting trace points... [1.331s] Computing alignments... [33.78s] Deallocating buffers... [0.018s] Loading trace points... [0.074s] Sorting trace points... [0.921s] Computing alignments... [33.907s] Deallocating buffers... [0.017s] Loading trace points... [0.076s] Sorting trace points... [1.09s] Computing alignments... [33.551s] Deallocating buffers... [0.016s] Loading trace points... [0.083s] Sorting trace points... [1.361s] Computing alignments... [34.13s] Deallocating buffers... [0.019s] Loading trace points... [0.053s] Sorting trace points... [1.26s] Computing alignments... [34.379s] Deallocating buffers... [0.015s] Loading trace points... [0.098s] Sorting trace points... [1.316s] Computing alignments... [34.196s] Deallocating buffers... [0.015s] Loading trace points... [0s] Sorting trace points... [1.064s] Computing alignments... [33.69s] Deallocating buffers... [0.018s] Loading trace points... [0s] [560.613s] Deallocating reference... [0.057s] Loading reference sequences... [29.445s] Masking reference... [30.932s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.007s] Building reference histograms... [32.421s] Allocating buffers... [0s] Processing query block 1, reference block 6/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.501s] Building query seed array... [2.221s] Computing hash join... [6.441s] Masking low complexity seeds... [0.296s] Searching alignments... [79.398s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 1/2, index chunk 2/4. Building reference seed array... [13.239s] Building query seed array... [3.035s] Computing hash join... [7.021s] Masking low complexity seeds... [0.339s] Searching alignments... [56.505s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.957s] Building query seed array... [2.725s] Computing hash join... [6.863s] Masking low complexity seeds... [0.305s] Searching alignments... [43.979s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.663s] Building query seed array... [2.39s] Computing hash join... [7.274s] Masking low complexity seeds... [0.245s] Searching alignments... [39.281s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.53s] Building query seed array... [2.084s] Computing hash join... [6.377s] Masking low complexity seeds... [0.235s] Searching alignments... [42.259s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.917s] Building query seed array... [2.4s] Computing hash join... [6.254s] Masking low complexity seeds... [0.254s] Searching alignments... [32.576s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.896s] Building query seed array... [2.666s] Computing hash join... [6.355s] Masking low complexity seeds... [0.26s] Searching alignments... [36.803s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.84s] Building query seed array... [2.071s] Computing hash join... [6.423s] Masking low complexity seeds... [0.248s] Searching alignments... [29.6s] Deallocating memory... [0s] Deallocating buffers... [2.048s] Clearing query masking... [1.657s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [6.605s] Sorting trace points... [1.369s] Computing alignments... [31.934s] Deallocating buffers... [0.014s] Loading trace points... [0.072s] Sorting trace points... [1.408s] Computing alignments... [32.235s] Deallocating buffers... [0.314s] Loading trace points... [0.068s] Sorting trace points... [1.243s] Computing alignments... [31.568s] Deallocating buffers... [0.014s] Loading trace points... [0.054s] Sorting trace points... [1.283s] Computing alignments... [32.593s] Deallocating buffers... [0.015s] Loading trace points... [0.428s] Sorting trace points... [1.319s] Computing alignments... [33.177s] Deallocating buffers... [0.018s] Loading trace points... [0.036s] Sorting trace points... [1.409s] Computing alignments... [33.497s] Deallocating buffers... [0.224s] Loading trace points... [0.09s] Sorting trace points... [1.256s] Computing alignments... [32.633s] Deallocating buffers... [0.015s] Loading trace points... [0.093s] Sorting trace points... [1.252s] Computing alignments... [32.571s] Deallocating buffers... [0.014s] Loading trace points... [0.071s] Sorting trace points... [1.198s] Computing alignments... [32.999s] Deallocating buffers... [0.017s] Loading trace points... [0.081s] Sorting trace points... [1.375s] Computing alignments... [33.594s] Deallocating buffers... [0.14s] Loading trace points... [0.001s] Sorting trace points... [1.315s] Computing alignments... [33.76s] Deallocating buffers... [0.018s] Loading trace points... [0.099s] Sorting trace points... [1.181s] Computing alignments... [33.328s] Deallocating buffers... [0.015s] Loading trace points... [0.082s] Sorting trace points... [1.286s] Computing alignments... [34.01s] Deallocating buffers... [0.015s] Loading trace points... [0.091s] Sorting trace points... [1.057s] Computing alignments... [33.931s] Deallocating buffers... [0.016s] Loading trace points... [0s] Sorting trace points... [1.371s] Computing alignments... [33.882s] Deallocating buffers... [0.014s] Loading trace points... [0s] Sorting trace points... [1.302s] Computing alignments... [33.531s] Deallocating buffers... [0.015s] Loading trace points... [0s] [558.836s] Deallocating reference... [0.056s] Loading reference sequences... [29.261s] Masking reference... [32.071s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.007s] Building reference histograms... [32.169s] Allocating buffers... [0s] Processing query block 1, reference block 7/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.444s] Building query seed array... [2.138s] Computing hash join... [6.951s] Masking low complexity seeds... [0.603s] Searching alignments... [83.011s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 1/2, index chunk 2/4. Building reference seed array... [13.215s] Building query seed array... [3.045s] Computing hash join... [7.226s] Masking low complexity seeds... [0.346s] Searching alignments... [59.261s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 1/2, index chunk 3/4. Building reference seed array... [14.303s] Building query seed array... [2.809s] Computing hash join... [7.381s] Masking low complexity seeds... [0.255s] Searching alignments... [45.746s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.637s] Building query seed array... [2.435s] Computing hash join... [6.575s] Masking low complexity seeds... [0.276s] Searching alignments... [40.506s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.599s] Building query seed array... [2.009s] Computing hash join... [6.234s] Masking low complexity seeds... [0.266s] Searching alignments... [43.611s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 2/2, index chunk 2/4. Building reference seed array... [13.101s] Building query seed array... [2.553s] Computing hash join... [6.887s] Masking low complexity seeds... [0.275s] Searching alignments... [33.29s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 2/2, index chunk 3/4. Building reference seed array... [14.151s] Building query seed array... [2.537s] Computing hash join... [6.709s] Masking low complexity seeds... [0.244s] Searching alignments... [38.941s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.462s] Building query seed array... [2.167s] Computing hash join... [6.86s] Masking low complexity seeds... [0.315s] Searching alignments... [32.002s] Deallocating memory... [0s] Deallocating buffers... [1.93s] Clearing query masking... [1.678s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [6.695s] Sorting trace points... [1.336s] Computing alignments... [32.476s] Deallocating buffers... [0.016s] Loading trace points... [0.001s] Sorting trace points... [1.358s] Computing alignments... [32.723s] Deallocating buffers... [0.233s] Loading trace points... [0.072s] Sorting trace points... [1.271s] Computing alignments... [32.045s] Deallocating buffers... [0.017s] Loading trace points... [0.052s] Sorting trace points... [1.259s] Computing alignments... [33.003s] Deallocating buffers... [0.014s] Loading trace points... [0.099s] Sorting trace points... [0.995s] Computing alignments... [33.837s] Deallocating buffers... [0.016s] Loading trace points... [0.063s] Sorting trace points... [1.305s] Computing alignments... [34.192s] Deallocating buffers... [0.018s] Loading trace points... [0.076s] Sorting trace points... [1.284s] Computing alignments... [33.122s] Deallocating buffers... [0.014s] Loading trace points... [0.049s] Sorting trace points... [1.26s] Computing alignments... [33.121s] Deallocating buffers... [0.024s] Loading trace points... [0s] Sorting trace points... [1.276s] Computing alignments... [33.366s] Deallocating buffers... [0.014s] Loading trace points... [0.06s] Sorting trace points... [1.096s] Computing alignments... [33.859s] Deallocating buffers... [0.017s] Loading trace points... [0.062s] Sorting trace points... [1.115s] Computing alignments... [34.128s] Deallocating buffers... [0.017s] Loading trace points... [0.09s] Sorting trace points... [1.199s] Computing alignments... [33.78s] Deallocating buffers... [0.017s] Loading trace points... [0.078s] Sorting trace points... [1.504s] Computing alignments... [34.578s] Deallocating buffers... [0.133s] Loading trace points... [0.068s] Sorting trace points... [1.386s] Computing alignments... [34.433s] Deallocating buffers... [0.015s] Loading trace points... [0.237s] Sorting trace points... [1.059s] Computing alignments... [34.208s] Deallocating buffers... [0.017s] Loading trace points... [0s] Sorting trace points... [1.267s] Computing alignments... [33.866s] Deallocating buffers... [0.039s] Loading trace points... [0s] [565.269s] Deallocating reference... [0.06s] Loading reference sequences... [29.443s] Masking reference... [31.344s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.007s] Building reference histograms... [32.339s] Allocating buffers... [0s] Processing query block 1, reference block 8/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.532s] Building query seed array... [2.059s] Computing hash join... [7.096s] Masking low complexity seeds... [0.431s] Searching alignments... [80.512s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 1/2, index chunk 2/4. Building reference seed array... [13.207s] Building query seed array... [2.917s] Computing hash join... [6.771s] Masking low complexity seeds... [0.267s] Searching alignments... [58.035s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.242s] Building query seed array... [2.72s] Computing hash join... [6.687s] Masking low complexity seeds... [0.265s] Searching alignments... [44.77s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.84s] Building query seed array... [2.274s] Computing hash join... [6.746s] Masking low complexity seeds... [0.27s] Searching alignments... [40.36s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.871s] Building query seed array... [2.264s] Computing hash join... [6.375s] Masking low complexity seeds... [0.262s] Searching alignments... [42.303s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.963s] Building query seed array... [2.475s] Computing hash join... [6.452s] Masking low complexity seeds... [0.254s] Searching alignments... [32.984s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.682s] Building query seed array... [2.665s] Computing hash join... [6.359s] Masking low complexity seeds... [0.284s] Searching alignments... [37.993s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.585s] Building query seed array... [2.102s] Computing hash join... [6.247s] Masking low complexity seeds... [0.262s] Searching alignments... [31.32s] Deallocating memory... [0s] Deallocating buffers... [1.962s] Clearing query masking... [1.67s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [6.694s] Sorting trace points... [1.333s] Computing alignments... [32.179s] Deallocating buffers... [0.016s] Loading trace points... [0s] Sorting trace points... [1.297s] Computing alignments... [32.098s] Deallocating buffers... [0.139s] Loading trace points... [0.268s] Sorting trace points... [1.1s] Computing alignments... [31.91s] Deallocating buffers... [0.015s] Loading trace points... [0.072s] Sorting trace points... [1.309s] Computing alignments... [32.912s] Deallocating buffers... [0.015s] Loading trace points... [0.082s] Sorting trace points... [1.364s] Computing alignments... [33.43s] Deallocating buffers... [0.018s] Loading trace points... [0.064s] Sorting trace points... [1.063s] Computing alignments... [33.997s] Deallocating buffers... [0.017s] Loading trace points... [0.069s] Sorting trace points... [1.124s] Computing alignments... [32.792s] Deallocating buffers... [0.017s] Loading trace points... [0.058s] Sorting trace points... [1.076s] Computing alignments... [32.84s] Deallocating buffers... [0.017s] Loading trace points... [0s] Sorting trace points... [1.412s] Computing alignments... [33.147s] Deallocating buffers... [0.064s] Loading trace points... [0.035s] Sorting trace points... [1.317s] Computing alignments... [33.773s] Deallocating buffers... [0.018s] Loading trace points... [0.085s] Sorting trace points... [1.068s] Computing alignments... [34.137s] Deallocating buffers... [0.016s] Loading trace points... [0.101s] Sorting trace points... [1.278s] Computing alignments... [33.658s] Deallocating buffers... [0.014s] Loading trace points... [0.101s] Sorting trace points... [1.294s] Computing alignments... [34.244s] Deallocating buffers... [0.015s] Loading trace points... [0.065s] Sorting trace points... [1.232s] Computing alignments... [34.393s] Deallocating buffers... [0.017s] Loading trace points... [0.132s] Sorting trace points... [1.274s] Computing alignments... [34.164s] Deallocating buffers... [0.018s] Loading trace points... [0s] Sorting trace points... [1.323s] Computing alignments... [33.868s] Deallocating buffers... [0.015s] Loading trace points... [0s] [561.844s] Deallocating reference... [0.056s] Loading reference sequences... [29.457s] Masking reference... [32.142s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.007s] Building reference histograms... [31.811s] Allocating buffers... [0s] Processing query block 1, reference block 9/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.593s] Building query seed array... [2.192s] Computing hash join... [7.25s] Masking low complexity seeds... [0.317s] Searching alignments... [81.99s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.932s] Building query seed array... [3.284s] Computing hash join... [6.875s] Masking low complexity seeds... [0.276s] Searching alignments... [56.479s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.996s] Building query seed array... [2.813s] Computing hash join... [6.931s] Masking low complexity seeds... [0.269s] Searching alignments... [45.034s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.747s] Building query seed array... [2.351s] Computing hash join... [6.479s] Masking low complexity seeds... [0.247s] Searching alignments... [40.401s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.395s] Building query seed array... [2.186s] Computing hash join... [6.345s] Masking low complexity seeds... [0.242s] Searching alignments... [43.365s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 2/2, index chunk 2/4. Building reference seed array... [13.14s] Building query seed array... [2.438s] Computing hash join... [6.521s] Masking low complexity seeds... [0.279s] Searching alignments... [32.729s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.929s] Building query seed array... [2.718s] Computing hash join... [6.228s] Masking low complexity seeds... [0.273s] Searching alignments... [38.15s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.487s] Building query seed array... [2.069s] Computing hash join... [6.218s] Masking low complexity seeds... [0.262s] Searching alignments... [30.59s] Deallocating memory... [0s] Deallocating buffers... [2.074s] Clearing query masking... [1.665s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [6.62s] Sorting trace points... [1.33s] Computing alignments... [32.069s] Deallocating buffers... [0.015s] Loading trace points... [0.089s] Sorting trace points... [1.256s] Computing alignments... [32.029s] Deallocating buffers... [0.018s] Loading trace points... [0.802s] Sorting trace points... [0.986s] Computing alignments... [31.755s] Deallocating buffers... [0.015s] Loading trace points... [0.062s] Sorting trace points... [1.285s] Computing alignments... [32.777s] Deallocating buffers... [0.014s] Loading trace points... [0.055s] Sorting trace points... [1.443s] Computing alignments... [33.463s] Deallocating buffers... [0.093s] Loading trace points... [0.079s] Sorting trace points... [1.335s] Computing alignments... [33.976s] Deallocating buffers... [0.015s] Loading trace points... [0.063s] Sorting trace points... [1.019s] Computing alignments... [32.692s] Deallocating buffers... [0.017s] Loading trace points... [0.001s] Sorting trace points... [1.054s] Computing alignments... [32.794s] Deallocating buffers... [0.015s] Loading trace points... [0.132s] Sorting trace points... [1.047s] Computing alignments... [33.082s] Deallocating buffers... [0.017s] Loading trace points... [0s] Sorting trace points... [1.359s] Computing alignments... [33.622s] Deallocating buffers... [0.018s] Loading trace points... [0.056s] Sorting trace points... [1.177s] Computing alignments... [33.824s] Deallocating buffers... [0.018s] Loading trace points... [0.046s] Sorting trace points... [1.02s] Computing alignments... [33.415s] Deallocating buffers... [0.016s] Loading trace points... [0.073s] Sorting trace points... [1.342s] Computing alignments... [33.946s] Deallocating buffers... [0.015s] Loading trace points... [0.046s] Sorting trace points... [1.344s] Computing alignments... [34.127s] Deallocating buffers... [0.015s] Loading trace points... [0.106s] Sorting trace points... [1.343s] Computing alignments... [34.045s] Deallocating buffers... [0.018s] Loading trace points... [0s] Sorting trace points... [1.056s] Computing alignments... [33.687s] Deallocating buffers... [0.017s] Loading trace points... [0s] [559.451s] Deallocating reference... [0.059s] Loading reference sequences... [29.689s] Masking reference... [30.935s] Initializing dictionary... [0.077s] Initializing temporary storage... [0.007s] Building reference histograms... [32.38s] Allocating buffers... [0.001s] Processing query block 1, reference block 10/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.337s] Building query seed array... [2.243s] Computing hash join... [7.107s] Masking low complexity seeds... [0.517s] Searching alignments... [81.188s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.635s] Building query seed array... [2.853s] Computing hash join... [6.55s] Masking low complexity seeds... [0.249s] Searching alignments... [58.123s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.937s] Building query seed array... [2.809s] Computing hash join... [6.853s] Masking low complexity seeds... [0.266s] Searching alignments... [44.987s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.619s] Building query seed array... [2.331s] Computing hash join... [6.61s] Masking low complexity seeds... [0.308s] Searching alignments... [40.287s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.456s] Building query seed array... [2.233s] Computing hash join... [6.591s] Masking low complexity seeds... [0.291s] Searching alignments... [43.842s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.819s] Building query seed array... [2.516s] Computing hash join... [7.061s] Masking low complexity seeds... [0.352s] Searching alignments... [33.299s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.616s] Building query seed array... [2.653s] Computing hash join... [7.226s] Masking low complexity seeds... [0.313s] Searching alignments... [38.794s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 2/2, index chunk 4/4. Building reference seed array... [11.099s] Building query seed array... [2.18s] Computing hash join... [6.529s] Masking low complexity seeds... [0.244s] Searching alignments... [31.087s] Deallocating memory... [0s] Deallocating buffers... [2.171s] Clearing query masking... [1.654s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [7.012s] Sorting trace points... [1.33s] Computing alignments... [32.028s] Deallocating buffers... [0.016s] Loading trace points... [0.076s] Sorting trace points... [1.32s] Computing alignments... [32.143s] Deallocating buffers... [0.171s] Loading trace points... [0.384s] Sorting trace points... [1.154s] Computing alignments... [31.829s] Deallocating buffers... [0.016s] Loading trace points... [0.044s] Sorting trace points... [1.256s] Computing alignments... [32.769s] Deallocating buffers... [0.018s] Loading trace points... [0.159s] Sorting trace points... [0.991s] Computing alignments... [33.389s] Deallocating buffers... [0.016s] Loading trace points... [0.066s] Sorting trace points... [1.326s] Computing alignments... [33.879s] Deallocating buffers... [0.015s] Loading trace points... [0.054s] Sorting trace points... [1.063s] Computing alignments... [32.763s] Deallocating buffers... [0.015s] Loading trace points... [0.001s] Sorting trace points... [1.01s] Computing alignments... [32.877s] Deallocating buffers... [0.016s] Loading trace points... [0.093s] Sorting trace points... [1.289s] Computing alignments... [33.11s] Deallocating buffers... [0.014s] Loading trace points... [0.001s] Sorting trace points... [1.32s] Computing alignments... [33.689s] Deallocating buffers... [0.018s] Loading trace points... [0.074s] Sorting trace points... [1.08s] Computing alignments... [33.972s] Deallocating buffers... [0.017s] Loading trace points... [0.08s] Sorting trace points... [0.942s] Computing alignments... [33.536s] Deallocating buffers... [0.016s] Loading trace points... [0.072s] Sorting trace points... [1.332s] Computing alignments... [34.387s] Deallocating buffers... [0.015s] Loading trace points... [0.057s] Sorting trace points... [0.939s] Computing alignments... [34.185s] Deallocating buffers... [0.016s] Loading trace points... [0.072s] Sorting trace points... [1.341s] Computing alignments... [34.095s] Deallocating buffers... [0.015s] Loading trace points... [0s] Sorting trace points... [1.312s] Computing alignments... [33.737s] Deallocating buffers... [0.015s] Loading trace points... [0s] [560.248s] Deallocating reference... [0.059s] Loading reference sequences... [29.384s] Masking reference... [30.87s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.007s] Building reference histograms... [32.567s] Allocating buffers... [0s] Processing query block 1, reference block 11/14, shape 1/2, index chunk 1/4. Building reference seed array... [9.897s] Building query seed array... [2.121s] Computing hash join... [7.327s] Masking low complexity seeds... [0.435s] Searching alignments... [78.156s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.966s] Building query seed array... [3.03s] Computing hash join... [7.195s] Masking low complexity seeds... [0.308s] Searching alignments... [57.167s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 1/2, index chunk 3/4. Building reference seed array... [14.158s] Building query seed array... [2.648s] Computing hash join... [7.013s] Masking low complexity seeds... [0.26s] Searching alignments... [44.969s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.49s] Building query seed array... [2.33s] Computing hash join... [6.811s] Masking low complexity seeds... [0.25s] Searching alignments... [40.163s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.603s] Building query seed array... [2.17s] Computing hash join... [6.456s] Masking low complexity seeds... [0.241s] Searching alignments... [43.279s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.947s] Building query seed array... [2.454s] Computing hash join... [6.407s] Masking low complexity seeds... [0.265s] Searching alignments... [32.571s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.972s] Building query seed array... [2.588s] Computing hash join... [6.238s] Masking low complexity seeds... [0.28s] Searching alignments... [37.555s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.451s] Building query seed array... [2.19s] Computing hash join... [6.328s] Masking low complexity seeds... [0.254s] Searching alignments... [30.64s] Deallocating memory... [0s] Deallocating buffers... [2.191s] Clearing query masking... [1.669s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [6.623s] Sorting trace points... [1.329s] Computing alignments... [32.37s] Deallocating buffers... [0.015s] Loading trace points... [0.081s] Sorting trace points... [1.104s] Computing alignments... [32.306s] Deallocating buffers... [0.181s] Loading trace points... [0.076s] Sorting trace points... [1.246s] Computing alignments... [31.871s] Deallocating buffers... [0.014s] Loading trace points... [0.054s] Sorting trace points... [1.16s] Computing alignments... [33.207s] Deallocating buffers... [0.015s] Loading trace points... [0.06s] Sorting trace points... [0.987s] Computing alignments... [33.901s] Deallocating buffers... [0.017s] Loading trace points... [0.069s] Sorting trace points... [1.146s] Computing alignments... [34.838s] Deallocating buffers... [0.023s] Loading trace points... [0.055s] Sorting trace points... [1.31s] Computing alignments... [33.1s] Deallocating buffers... [0.017s] Loading trace points... [0.076s] Sorting trace points... [1.234s] Computing alignments... [33.353s] Deallocating buffers... [0.017s] Loading trace points... [0.093s] Sorting trace points... [1.114s] Computing alignments... [33.316s] Deallocating buffers... [0.015s] Loading trace points... [0.109s] Sorting trace points... [1.345s] Computing alignments... [33.986s] Deallocating buffers... [0.017s] Loading trace points... [0.078s] Sorting trace points... [1.293s] Computing alignments... [34.222s] Deallocating buffers... [0.021s] Loading trace points... [0.038s] Sorting trace points... [0.997s] Computing alignments... [33.725s] Deallocating buffers... [0.016s] Loading trace points... [0.048s] Sorting trace points... [1.373s] Computing alignments... [34.14s] Deallocating buffers... [0.015s] Loading trace points... [0.072s] Sorting trace points... [1.335s] Computing alignments... [34.415s] Deallocating buffers... [0.14s] Loading trace points... [0.043s] Sorting trace points... [1.332s] Computing alignments... [34.169s] Deallocating buffers... [0.036s] Loading trace points... [0s] Sorting trace points... [1.317s] Computing alignments... [33.803s] Deallocating buffers... [0.019s] Loading trace points... [0s] [564.687s] Deallocating reference... [0.062s] Loading reference sequences... [30.889s] Masking reference... [30.911s] Initializing dictionary... [0.077s] Initializing temporary storage... [0.007s] Building reference histograms... [32.968s] Allocating buffers... [0s] Processing query block 1, reference block 12/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.463s] Building query seed array... [2.158s] Computing hash join... [7.024s] Masking low complexity seeds... [0.571s] Searching alignments... [79.616s] Deallocating memory... [0.036s] Processing query block 1, reference block 12/14, shape 1/2, index chunk 2/4. Building reference seed array... [13.215s] Building query seed array... [2.939s] Computing hash join... [6.899s] Masking low complexity seeds... [0.257s] Searching alignments... [58.739s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 1/2, index chunk 3/4. Building reference seed array... [14.036s] Building query seed array... [2.893s] Computing hash join... [6.956s] Masking low complexity seeds... [0.333s] Searching alignments... [45.626s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 1/2, index chunk 4/4. Building reference seed array... [11.019s] Building query seed array... [2.352s] Computing hash join... [6.032s] Masking low complexity seeds... [0.27s] Searching alignments... [40.352s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 2/2, index chunk 1/4. Building reference seed array... [11.167s] Building query seed array... [2.187s] Computing hash join... [5.786s] Masking low complexity seeds... [0.271s] Searching alignments... [43.678s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 2/2, index chunk 2/4. Building reference seed array... [13.468s] Building query seed array... [2.458s] Computing hash join... [6.4s] Masking low complexity seeds... [0.266s] Searching alignments... [32.894s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.696s] Building query seed array... [2.653s] Computing hash join... [5.902s] Masking low complexity seeds... [0.291s] Searching alignments... [38.238s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 2/2, index chunk 4/4. Building reference seed array... [11.008s] Building query seed array... [2.183s] Computing hash join... [5.789s] Masking low complexity seeds... [0.283s] Searching alignments... [31.419s] Deallocating memory... [0s] Deallocating buffers... [2.756s] Clearing query masking... [1.601s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [6.531s] Sorting trace points... [1.338s] Computing alignments... [32.177s] Deallocating buffers... [0.016s] Loading trace points... [0.056s] Sorting trace points... [1.461s] Computing alignments... [32.301s] Deallocating buffers... [0.282s] Loading trace points... [1.116s] Sorting trace points... [1.317s] Computing alignments... [31.945s] Deallocating buffers... [0.015s] Loading trace points... [0.041s] Sorting trace points... [1.141s] Computing alignments... [32.694s] Deallocating buffers... [0.015s] Loading trace points... [0.058s] Sorting trace points... [1.337s] Computing alignments... [33.181s] Deallocating buffers... [0.018s] Loading trace points... [0.12s] Sorting trace points... [1.246s] Computing alignments... [33.73s] Deallocating buffers... [0.015s] Loading trace points... [0.035s] Sorting trace points... [1.24s] Computing alignments... [32.689s] Deallocating buffers... [0.015s] Loading trace points... [0.029s] Sorting trace points... [1.474s] Computing alignments... [32.714s] Deallocating buffers... [0.303s] Loading trace points... [0.094s] Sorting trace points... [1.32s] Computing alignments... [33.119s] Deallocating buffers... [0.018s] Loading trace points... [0.148s] Sorting trace points... [1.222s] Computing alignments... [33.765s] Deallocating buffers... [0.017s] Loading trace points... [0.078s] Sorting trace points... [1.451s] Computing alignments... [34.168s] Deallocating buffers... [0.285s] Loading trace points... [0.044s] Sorting trace points... [1.329s] Computing alignments... [33.626s] Deallocating buffers... [0.018s] Loading trace points... [0.063s] Sorting trace points... [1.512s] Computing alignments... [34.019s] Deallocating buffers... [0.142s] Loading trace points... [0.06s] Sorting trace points... [1.359s] Computing alignments... [34.117s] Deallocating buffers... [0.015s] Loading trace points... [0.928s] Sorting trace points... [1.448s] Computing alignments... [34.054s] Deallocating buffers... [0.019s] Loading trace points... [0s] Sorting trace points... [1.236s] Computing alignments... [33.766s] Deallocating buffers... [0.018s] Loading trace points... [0s] [564.187s] Deallocating reference... [0.057s] Loading reference sequences... [29.314s] Masking reference... [31.691s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.007s] Building reference histograms... [32.444s] Allocating buffers... [0.001s] Processing query block 1, reference block 13/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.077s] Building query seed array... [2.103s] Computing hash join... [7.17s] Masking low complexity seeds... [0.273s] Searching alignments... [83.322s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 1/2, index chunk 2/4. Building reference seed array... [13.987s] Building query seed array... [3.032s] Computing hash join... [7.317s] Masking low complexity seeds... [0.363s] Searching alignments... [57.593s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 1/2, index chunk 3/4. Building reference seed array... [14.028s] Building query seed array... [2.951s] Computing hash join... [7.413s] Masking low complexity seeds... [0.374s] Searching alignments... [46.181s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.915s] Building query seed array... [2.387s] Computing hash join... [6.515s] Masking low complexity seeds... [0.26s] Searching alignments... [40.276s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.943s] Building query seed array... [2.021s] Computing hash join... [6.199s] Masking low complexity seeds... [0.248s] Searching alignments... [43.878s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.798s] Building query seed array... [2.533s] Computing hash join... [6.701s] Masking low complexity seeds... [0.255s] Searching alignments... [33.37s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.912s] Building query seed array... [2.588s] Computing hash join... [6.711s] Masking low complexity seeds... [0.267s] Searching alignments... [39.396s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.804s] Building query seed array... [2.126s] Computing hash join... [6.618s] Masking low complexity seeds... [0.273s] Searching alignments... [31.424s] Deallocating memory... [0s] Deallocating buffers... [2.351s] Clearing query masking... [1.689s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [7.317s] Sorting trace points... [1.307s] Computing alignments... [32.461s] Deallocating buffers... [0.014s] Loading trace points... [0.125s] Sorting trace points... [1.45s] Computing alignments... [32.469s] Deallocating buffers... [0.283s] Loading trace points... [0.103s] Sorting trace points... [0.978s] Computing alignments... [31.956s] Deallocating buffers... [0.015s] Loading trace points... [0.061s] Sorting trace points... [0.908s] Computing alignments... [32.922s] Deallocating buffers... [0.016s] Loading trace points... [0.126s] Sorting trace points... [1.305s] Computing alignments... [33.683s] Deallocating buffers... [0.014s] Loading trace points... [0.072s] Sorting trace points... [1.316s] Computing alignments... [34.088s] Deallocating buffers... [0.015s] Loading trace points... [0.051s] Sorting trace points... [1.236s] Computing alignments... [33.046s] Deallocating buffers... [0.018s] Loading trace points... [0.033s] Sorting trace points... [0.998s] Computing alignments... [32.997s] Deallocating buffers... [0.127s] Loading trace points... [0.079s] Sorting trace points... [1.166s] Computing alignments... [33.282s] Deallocating buffers... [0.017s] Loading trace points... [0.001s] Sorting trace points... [1.271s] Computing alignments... [33.807s] Deallocating buffers... [0.015s] Loading trace points... [0.072s] Sorting trace points... [1.329s] Computing alignments... [34.052s] Deallocating buffers... [0.018s] Loading trace points... [0.061s] Sorting trace points... [0.976s] Computing alignments... [33.559s] Deallocating buffers... [0.016s] Loading trace points... [1.399s] Sorting trace points... [1.374s] Computing alignments... [34.195s] Deallocating buffers... [0.067s] Loading trace points... [0.113s] Sorting trace points... [1.25s] Computing alignments... [34.388s] Deallocating buffers... [0.019s] Loading trace points... [0.124s] Sorting trace points... [1.389s] Computing alignments... [34.362s] Deallocating buffers... [0.065s] Loading trace points... [0s] Sorting trace points... [1.379s] Computing alignments... [33.789s] Deallocating buffers... [0.015s] Loading trace points... [0s] [565.357s] Deallocating reference... [0.061s] Loading reference sequences... [25.612s] Masking reference... [25.843s] Initializing dictionary... [0.063s] Initializing temporary storage... [0.007s] Building reference histograms... [25.919s] Allocating buffers... [0s] Processing query block 1, reference block 14/14, shape 1/2, index chunk 1/4. Building reference seed array... [8.334s] Building query seed array... [2.134s] Computing hash join... [4.862s] Masking low complexity seeds... [0.255s] Searching alignments... [67.34s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 1/2, index chunk 2/4. Building reference seed array... [10.62s] Building query seed array... [3.099s] Computing hash join... [5.189s] Masking low complexity seeds... [0.243s] Searching alignments... [45.884s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 1/2, index chunk 3/4. Building reference seed array... [11.029s] Building query seed array... [2.858s] Computing hash join... [5.094s] Masking low complexity seeds... [0.242s] Searching alignments... [37.112s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 1/2, index chunk 4/4. Building reference seed array... [8.219s] Building query seed array... [2.345s] Computing hash join... [5.135s] Masking low complexity seeds... [0.247s] Searching alignments... [33.269s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 2/2, index chunk 1/4. Building reference seed array... [8.231s] Building query seed array... [2.183s] Computing hash join... [4.979s] Masking low complexity seeds... [0.235s] Searching alignments... [35.966s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 2/2, index chunk 2/4. Building reference seed array... [10.275s] Building query seed array... [2.454s] Computing hash join... [5.162s] Masking low complexity seeds... [0.238s] Searching alignments... [27.216s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 2/2, index chunk 3/4. Building reference seed array... [10.897s] Building query seed array... [2.546s] Computing hash join... [5.335s] Masking low complexity seeds... [0.23s] Searching alignments... [30.906s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 2/2, index chunk 4/4. Building reference seed array... [8.175s] Building query seed array... [2.191s] Computing hash join... [5.1s] Masking low complexity seeds... [0.236s] Searching alignments... [25.302s] Deallocating memory... [0s] Deallocating buffers... [1.069s] Clearing query masking... [1.619s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [11.197s] Sorting trace points... [2.192s] Computing alignments... [51.475s] Deallocating buffers... [0.027s] Loading trace points... [0.095s] Sorting trace points... [2.293s] Computing alignments... [51.916s] Deallocating buffers... [0.463s] Loading trace points... [0.154s] Sorting trace points... [1.784s] Computing alignments... [53.604s] Deallocating buffers... [0.026s] Loading trace points... [0.324s] Sorting trace points... [1.834s] Computing alignments... [52.161s] Deallocating buffers... [0.07s] Loading trace points... [0.073s] Sorting trace points... [1.696s] Computing alignments... [53.255s] Deallocating buffers... [0.026s] Loading trace points... [0.234s] Sorting trace points... [1.883s] Computing alignments... [53.574s] Deallocating buffers... [0.067s] Loading trace points... [0.175s] Sorting trace points... [2.192s] Computing alignments... [54.311s] Deallocating buffers... [0.181s] Loading trace points... [0s] Sorting trace points... [1.625s] Computing alignments... [53.551s] Deallocating buffers... [0.054s] Loading trace points... [0s] [452.661s] Deallocating reference... [0.048s] Loading reference sequences... [0.084s] Deallocating buffers... [0s] Joining output blocks... Joining output blocks... [2221.54s] [2221.54s] Deallocating queries... [0.084s] Loading query sequences... [0s] Closing the input file... [0s] Closing the output file... Loading dictionary... [3.742s] [4.81s] Closing the database... [0s] Cleaning up... [0s] Total time = 19336.8s Reported 2330532887 pairwise alignments, 2330532887 HSPs. 13807024 queries aligned. DIAMOND BLASTx on /gscratch/srlab/sam/data/P_verrucosa/RNAseq/C19_R2.fastp-trim.20230215.fq.gz complete: C19_R2.blastx.meganized.daa Now MEGANizing C19_R2.blastx.meganized.daa Version MEGAN Community Edition (version 6.22.0, built 19 Feb 2022) Author(s) Daniel H. Huson Copyright (C) 2022 Daniel H. Huson. This program comes with ABSOLUTELY NO WARRANTY. Java version: 17.0.2 Functional classifications to use: EC, EGGNOG, GTDB, INTERPRO2GO, SEED Loading ncbi.map: 2,396,736 Loading ncbi.tre: 2,396,740 Loading ec.map: 8,200 Loading ec.tre: 8,204 Loading eggnog.map: 30,875 Loading eggnog.tre: 30,986 Loading gtdb.map: 240,103 Loading gtdb.tre: 240,107 Loading interpro2go.map: 14,242 Loading interpro2go.tre: 28,907 Loading seed.map: 961 Loading seed.tre: 962 Meganizing: C19_R2.blastx.meganized.daa Meganizing init Annotating DAA file using FAST mode (accession database and first accession per line) Annotating references 10% 20% 30% 40% 50% 60% 70% 100% (518.4s) Writing 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (1.2s) Binning reads Initializing... Initializing binning... Using 'Naive LCA' algorithm for binning: Taxonomy Using Best-Hit algorithm for binning: SEED Using Best-Hit algorithm for binning: EGGNOG Using 'Naive LCA' algorithm for binning: GTDB Using Best-Hit algorithm for binning: EC Using Best-Hit algorithm for binning: INTERPRO2GO Binning reads... Binning reads Analyzing alignments 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (4,451.7s) Total reads: 13,807,024 With hits: 13,807,024 Alignments: 2,320,473,708 Assig. Taxonomy: 12,981,827 Assig. SEED: 102,227 Assig. EGGNOG: 46,317 Assig. GTDB: 348,272 Assig. EC: 2,158,084 Assig. INTERPRO2GO: 1,133,684 MinSupport set to: 6903 Binning reads Applying min-support & disabled filter to Taxonomy... 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (0.5s) Min-supp. changes: 3,725 Binning reads Applying min-support & disabled filter to GTDB... 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (10.2s) Min-supp. changes: 2,828 Binning reads Writing classification tables 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (27.1s) Binning reads Syncing 100% (0.4s) Class. Taxonomy: 73 Class. SEED: 482 Class. EGGNOG: 1,717 Class. GTDB: 16 Class. EC: 2,317 Class. INTERPRO2GO: 8,037 Total time: 5,018s Peak memory: 35.5 of 195.3G MEGANization of C19_R2.blastx.meganized.daa completed. Generating MD5 checksum for /gscratch/srlab/sam/data/P_verrucosa/RNAseq/C20_R1.fastp-trim.20230215.fq.gz... 0525a384c0b5cbcceb261e1d81f2b100 /gscratch/srlab/sam/data/P_verrucosa/RNAseq/C20_R1.fastp-trim.20230215.fq.gz Running DIAMOND BLASTx on /gscratch/srlab/sam/data/P_verrucosa/RNAseq/C20_R1.fastp-trim.20230215.fq.gz. diamond v2.1.1.155 (C) Max Planck Society for the Advancement of Science Documentation, support and updates available at http://www.diamondsearch.org Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021) #CPU threads: 40 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: Percentage range of top alignment score to report hits: 5 Opening the database... [0.341s] Database: /gscratch/srlab/blastdbs/20230215-ncbi-nr/20230215-ncbi-nr.dmnd (type: Diamond database, sequences: 526308523, letters: 207134680681) Block size = 15000000000 Opening the input file... [0.626s] Opening the output file... [0s] Loading query sequences... [76.224s] Masking queries... [18.73s] Algorithm: Double-indexed Building query histograms... [22.492s] Loading reference sequences... [31.966s] Masking reference... [32.104s] Initializing dictionary... [0.077s] Initializing temporary storage... [0.008s] Building reference histograms... [32.792s] Allocating buffers... [0s] Processing query block 1, reference block 1/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.554s] Building query seed array... [2.11s] Computing hash join... [6.844s] Masking low complexity seeds... [0.222s] Searching alignments... [107.437s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 1/2, index chunk 2/4. Building reference seed array... [13.022s] Building query seed array... [2.879s] Computing hash join... [6.15s] Masking low complexity seeds... [0.248s] Searching alignments... [63.534s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 1/2, index chunk 3/4. Building reference seed array... [14.597s] Building query seed array... [2.87s] Computing hash join... [5.964s] Masking low complexity seeds... [0.244s] Searching alignments... [49.183s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.328s] Building query seed array... [2.25s] Computing hash join... [6.324s] Masking low complexity seeds... [0.281s] Searching alignments... [43.147s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.684s] Building query seed array... [2.067s] Computing hash join... [5.84s] Masking low complexity seeds... [0.214s] Searching alignments... [40.929s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.997s] Building query seed array... [2.389s] Computing hash join... [5.562s] Masking low complexity seeds... [0.245s] Searching alignments... [33.612s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.791s] Building query seed array... [2.605s] Computing hash join... [5.606s] Masking low complexity seeds... [0.253s] Searching alignments... [36.495s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.879s] Building query seed array... [2.047s] Computing hash join... [5.63s] Masking low complexity seeds... [0.244s] Searching alignments... [30.424s] Deallocating memory... [0s] Deallocating buffers... [2.375s] Clearing query masking... [1.669s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [7.956s] Sorting trace points... [1.25s] Computing alignments... [32.185s] Deallocating buffers... [0.017s] Loading trace points... [0.175s] Sorting trace points... [0.957s] Computing alignments... [32.476s] Deallocating buffers... [0.021s] Loading trace points... [0.151s] Sorting trace points... [1.235s] Computing alignments... [32.203s] Deallocating buffers... [0.017s] Loading trace points... [0.074s] Sorting trace points... [1.229s] Computing alignments... [33.531s] Deallocating buffers... [0.018s] Loading trace points... [0.084s] Sorting trace points... [1.247s] Computing alignments... [33.981s] Deallocating buffers... [0.014s] Loading trace points... [0.43s] Sorting trace points... [1.313s] Computing alignments... [34.132s] Deallocating buffers... [0.015s] Loading trace points... [0s] Sorting trace points... [1.212s] Computing alignments... [33.14s] Deallocating buffers... [0.049s] Loading trace points... [0.173s] Sorting trace points... [1.286s] Computing alignments... [33.161s] Deallocating buffers... [0.017s] Loading trace points... [0.379s] Sorting trace points... [1.247s] Computing alignments... [32.914s] Deallocating buffers... [0.017s] Loading trace points... [0.119s] Sorting trace points... [1.204s] Computing alignments... [32.694s] Deallocating buffers... [0.014s] Loading trace points... [0.349s] Sorting trace points... [1.286s] Computing alignments... [33.291s] Deallocating buffers... [0.017s] Loading trace points... [0.104s] Sorting trace points... [1.221s] Computing alignments... [33.122s] Deallocating buffers... [0.017s] Loading trace points... [0.109s] Sorting trace points... [1.269s] Computing alignments... [33.034s] Deallocating buffers... [0.014s] Loading trace points... [0.215s] Sorting trace points... [1.302s] Computing alignments... [33.211s] Deallocating buffers... [0.015s] Loading trace points... [0.08s] Sorting trace points... [1.258s] Computing alignments... [33.026s] Deallocating buffers... [0.014s] Loading trace points... [0s] Sorting trace points... [1.24s] Computing alignments... [32.631s] Deallocating buffers... [0.014s] Loading trace points... [0s] [559.249s] Deallocating reference... [0.153s] Loading reference sequences... [52.542s] Masking reference... [31.156s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.007s] Building reference histograms... [32.76s] Allocating buffers... [0.001s] Processing query block 1, reference block 2/14, shape 1/2, index chunk 1/4. Building reference seed array... [9.955s] Building query seed array... [2.129s] Computing hash join... [6.776s] Masking low complexity seeds... [0.239s] Searching alignments... [111.064s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.546s] Building query seed array... [2.697s] Computing hash join... [6.454s] Masking low complexity seeds... [0.22s] Searching alignments... [61.869s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.719s] Building query seed array... [2.726s] Computing hash join... [7.086s] Masking low complexity seeds... [0.306s] Searching alignments... [50.431s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.59s] Building query seed array... [2.329s] Computing hash join... [6.392s] Masking low complexity seeds... [0.251s] Searching alignments... [43.141s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.544s] Building query seed array... [1.995s] Computing hash join... [6.393s] Masking low complexity seeds... [0.225s] Searching alignments... [41.156s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.637s] Building query seed array... [2.337s] Computing hash join... [6.872s] Masking low complexity seeds... [0.258s] Searching alignments... [32.632s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.306s] Building query seed array... [2.487s] Computing hash join... [6.97s] Masking low complexity seeds... [0.263s] Searching alignments... [35.244s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.082s] Building query seed array... [2.065s] Computing hash join... [6.868s] Masking low complexity seeds... [0.257s] Searching alignments... [31.029s] Deallocating memory... [0s] Deallocating buffers... [1.398s] Clearing query masking... [1.618s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [7.108s] Sorting trace points... [1.233s] Computing alignments... [31.523s] Deallocating buffers... [0.014s] Loading trace points... [0.093s] Sorting trace points... [1.218s] Computing alignments... [31.988s] Deallocating buffers... [0.025s] Loading trace points... [0.004s] Sorting trace points... [1.108s] Computing alignments... [31.753s] Deallocating buffers... [0.016s] Loading trace points... [0.07s] Sorting trace points... [1.241s] Computing alignments... [32.971s] Deallocating buffers... [0.107s] Loading trace points... [0.127s] Sorting trace points... [1.397s] Computing alignments... [33.402s] Deallocating buffers... [0.102s] Loading trace points... [0.066s] Sorting trace points... [1.283s] Computing alignments... [33.56s] Deallocating buffers... [0.014s] Loading trace points... [0.088s] Sorting trace points... [0.908s] Computing alignments... [32.78s] Deallocating buffers... [0.015s] Loading trace points... [0.085s] Sorting trace points... [1.405s] Computing alignments... [32.87s] Deallocating buffers... [0.199s] Loading trace points... [0.083s] Sorting trace points... [1.177s] Computing alignments... [32.583s] Deallocating buffers... [0.014s] Loading trace points... [0.116s] Sorting trace points... [1.256s] Computing alignments... [32.473s] Deallocating buffers... [0.014s] Loading trace points... [0.092s] Sorting trace points... [1.327s] Computing alignments... [32.82s] Deallocating buffers... [0.176s] Loading trace points... [0.106s] Sorting trace points... [1.067s] Computing alignments... [32.795s] Deallocating buffers... [0.017s] Loading trace points... [0.074s] Sorting trace points... [1.357s] Computing alignments... [32.722s] Deallocating buffers... [0.091s] Loading trace points... [0.128s] Sorting trace points... [1.363s] Computing alignments... [32.976s] Deallocating buffers... [0.125s] Loading trace points... [0.094s] Sorting trace points... [1.285s] Computing alignments... [32.945s] Deallocating buffers... [0.014s] Loading trace points... [0s] Sorting trace points... [1.22s] Computing alignments... [32.463s] Deallocating buffers... [0.014s] Loading trace points... [0s] [552.139s] Deallocating reference... [0.06s] Loading reference sequences... [29.41s] Masking reference... [32.128s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.007s] Building reference histograms... [32.334s] Allocating buffers... [0.001s] Processing query block 1, reference block 3/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.501s] Building query seed array... [2.098s] Computing hash join... [6.968s] Masking low complexity seeds... [0.481s] Searching alignments... [81.23s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.743s] Building query seed array... [2.892s] Computing hash join... [6.498s] Masking low complexity seeds... [0.237s] Searching alignments... [53.292s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.624s] Building query seed array... [2.768s] Computing hash join... [6.364s] Masking low complexity seeds... [0.238s] Searching alignments... [45.677s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.278s] Building query seed array... [2.28s] Computing hash join... [6.717s] Masking low complexity seeds... [0.234s] Searching alignments... [42.047s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.211s] Building query seed array... [2.161s] Computing hash join... [6.584s] Masking low complexity seeds... [0.264s] Searching alignments... [40.272s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.495s] Building query seed array... [2.312s] Computing hash join... [6.28s] Masking low complexity seeds... [0.217s] Searching alignments... [32.824s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.876s] Building query seed array... [2.548s] Computing hash join... [6.332s] Masking low complexity seeds... [0.208s] Searching alignments... [37.031s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.391s] Building query seed array... [2.001s] Computing hash join... [6.151s] Masking low complexity seeds... [0.204s] Searching alignments... [30.083s] Deallocating memory... [0s] Deallocating buffers... [1.516s] Clearing query masking... [1.794s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [6.542s] Sorting trace points... [1.333s] Computing alignments... [31.663s] Deallocating buffers... [0.015s] Loading trace points... [0.062s] Sorting trace points... [1.067s] Computing alignments... [32.125s] Deallocating buffers... [0.022s] Loading trace points... [0.038s] Sorting trace points... [1.123s] Computing alignments... [31.795s] Deallocating buffers... [0.014s] Loading trace points... [0.085s] Sorting trace points... [1.204s] Computing alignments... [33.106s] Deallocating buffers... [0.017s] Loading trace points... [0.001s] Sorting trace points... [1.311s] Computing alignments... [33.363s] Deallocating buffers... [0.019s] Loading trace points... [0.095s] Sorting trace points... [1.273s] Computing alignments... [33.601s] Deallocating buffers... [0.015s] Loading trace points... [0.115s] Sorting trace points... [1.277s] Computing alignments... [32.856s] Deallocating buffers... [0.089s] Loading trace points... [0.072s] Sorting trace points... [1.21s] Computing alignments... [32.713s] Deallocating buffers... [0.041s] Loading trace points... [0.055s] Sorting trace points... [1.253s] Computing alignments... [32.707s] Deallocating buffers... [0.014s] Loading trace points... [0.119s] Sorting trace points... [1.255s] Computing alignments... [32.564s] Deallocating buffers... [0.017s] Loading trace points... [0.097s] Sorting trace points... [1.265s] Computing alignments... [32.766s] Deallocating buffers... [0.014s] Loading trace points... [0.072s] Sorting trace points... [0.978s] Computing alignments... [32.738s] Deallocating buffers... [0.016s] Loading trace points... [0.075s] Sorting trace points... [1.265s] Computing alignments... [32.782s] Deallocating buffers... [0.046s] Loading trace points... [0.107s] Sorting trace points... [1.437s] Computing alignments... [33.111s] Deallocating buffers... [0.262s] Loading trace points... [0.076s] Sorting trace points... [1.317s] Computing alignments... [32.876s] Deallocating buffers... [0.015s] Loading trace points... [0s] Sorting trace points... [1.252s] Computing alignments... [32.356s] Deallocating buffers... [0.014s] Loading trace points... [0s] [551.338s] Deallocating reference... [0.066s] Loading reference sequences... [29.779s] Masking reference... [30.876s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.006s] Building reference histograms... [32.429s] Allocating buffers... [0.012s] Processing query block 1, reference block 4/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.194s] Building query seed array... [1.963s] Computing hash join... [6.744s] Masking low complexity seeds... [0.336s] Searching alignments... [77.488s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.314s] Building query seed array... [2.862s] Computing hash join... [6.448s] Masking low complexity seeds... [0.246s] Searching alignments... [52.811s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.801s] Building query seed array... [2.836s] Computing hash join... [6.444s] Masking low complexity seeds... [0.237s] Searching alignments... [43.012s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.366s] Building query seed array... [2.276s] Computing hash join... [6.77s] Masking low complexity seeds... [0.31s] Searching alignments... [39.746s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.529s] Building query seed array... [2.078s] Computing hash join... [6.493s] Masking low complexity seeds... [0.329s] Searching alignments... [39.92s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.601s] Building query seed array... [2.341s] Computing hash join... [6.195s] Masking low complexity seeds... [0.209s] Searching alignments... [33.012s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.683s] Building query seed array... [2.484s] Computing hash join... [6.213s] Masking low complexity seeds... [0.212s] Searching alignments... [35.317s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.474s] Building query seed array... [2.092s] Computing hash join... [6.22s] Masking low complexity seeds... [0.211s] Searching alignments... [29.878s] Deallocating memory... [0s] Deallocating buffers... [1.526s] Clearing query masking... [1.613s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [6.581s] Sorting trace points... [1.297s] Computing alignments... [32.781s] Deallocating buffers... [0.016s] Loading trace points... [0.086s] Sorting trace points... [1.237s] Computing alignments... [32.223s] Deallocating buffers... [0.02s] Loading trace points... [0.072s] Sorting trace points... [1.263s] Computing alignments... [31.969s] Deallocating buffers... [0.017s] Loading trace points... [0.049s] Sorting trace points... [1.23s] Computing alignments... [33.161s] Deallocating buffers... [0.014s] Loading trace points... [0.001s] Sorting trace points... [1.28s] Computing alignments... [33.466s] Deallocating buffers... [0.02s] Loading trace points... [0.092s] Sorting trace points... [1.271s] Computing alignments... [33.807s] Deallocating buffers... [0.231s] Loading trace points... [0.102s] Sorting trace points... [1.123s] Computing alignments... [33.025s] Deallocating buffers... [0.015s] Loading trace points... [0.076s] Sorting trace points... [1.255s] Computing alignments... [33.046s] Deallocating buffers... [0.014s] Loading trace points... [0.071s] Sorting trace points... [1.255s] Computing alignments... [32.921s] Deallocating buffers... [0.017s] Loading trace points... [0.067s] Sorting trace points... [1.188s] Computing alignments... [32.741s] Deallocating buffers... [0.125s] Loading trace points... [0.115s] Sorting trace points... [1.325s] Computing alignments... [32.952s] Deallocating buffers... [0.057s] Loading trace points... [0.088s] Sorting trace points... [1.358s] Computing alignments... [32.892s] Deallocating buffers... [0.224s] Loading trace points... [0.043s] Sorting trace points... [1.288s] Computing alignments... [32.897s] Deallocating buffers... [0.014s] Loading trace points... [0.042s] Sorting trace points... [1.272s] Computing alignments... [33.181s] Deallocating buffers... [0.017s] Loading trace points... [0.064s] Sorting trace points... [1.294s] Computing alignments... [33.146s] Deallocating buffers... [0.014s] Loading trace points... [0s] Sorting trace points... [1.453s] Computing alignments... [32.612s] Deallocating buffers... [0.315s] Loading trace points... [0s] [556.196s] Deallocating reference... [0.061s] Loading reference sequences... [31.281s] Masking reference... [32.05s] Initializing dictionary... [0.077s] Initializing temporary storage... [0.007s] Building reference histograms... [32.123s] Allocating buffers... [0s] Processing query block 1, reference block 5/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.275s] Building query seed array... [2.08s] Computing hash join... [6.588s] Masking low complexity seeds... [0.237s] Searching alignments... [78.252s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 1/2, index chunk 2/4. Building reference seed array... [13.001s] Building query seed array... [2.974s] Computing hash join... [6.51s] Masking low complexity seeds... [0.256s] Searching alignments... [52.716s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 1/2, index chunk 3/4. Building reference seed array... [14.071s] Building query seed array... [2.852s] Computing hash join... [6.578s] Masking low complexity seeds... [0.232s] Searching alignments... [45.023s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.53s] Building query seed array... [2.2s] Computing hash join... [6.454s] Masking low complexity seeds... [0.233s] Searching alignments... [39.645s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.414s] Building query seed array... [2.147s] Computing hash join... [6.061s] Masking low complexity seeds... [0.209s] Searching alignments... [40.382s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.86s] Building query seed array... [2.472s] Computing hash join... [6.186s] Masking low complexity seeds... [0.237s] Searching alignments... [32.799s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.834s] Building query seed array... [2.497s] Computing hash join... [6.214s] Masking low complexity seeds... [0.233s] Searching alignments... [36.338s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.168s] Building query seed array... [2.14s] Computing hash join... [6.118s] Masking low complexity seeds... [0.213s] Searching alignments... [30.719s] Deallocating memory... [0s] Deallocating buffers... [1.613s] Clearing query masking... [1.581s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [6.516s] Sorting trace points... [1.302s] Computing alignments... [31.654s] Deallocating buffers... [0.014s] Loading trace points... [0.074s] Sorting trace points... [1.224s] Computing alignments... [32.287s] Deallocating buffers... [0.019s] Loading trace points... [0.057s] Sorting trace points... [1.251s] Computing alignments... [32.028s] Deallocating buffers... [0.013s] Loading trace points... [0.275s] Sorting trace points... [1.454s] Computing alignments... [33.341s] Deallocating buffers... [0.311s] Loading trace points... [0.074s] Sorting trace points... [1.294s] Computing alignments... [33.509s] Deallocating buffers... [0.023s] Loading trace points... [0.084s] Sorting trace points... [1.12s] Computing alignments... [33.681s] Deallocating buffers... [0.015s] Loading trace points... [0.087s] Sorting trace points... [0.992s] Computing alignments... [32.826s] Deallocating buffers... [0.015s] Loading trace points... [0.058s] Sorting trace points... [1.244s] Computing alignments... [32.799s] Deallocating buffers... [0.072s] Loading trace points... [0.061s] Sorting trace points... [1.264s] Computing alignments... [32.675s] Deallocating buffers... [0.014s] Loading trace points... [0.116s] Sorting trace points... [1.068s] Computing alignments... [32.432s] Deallocating buffers... [0.016s] Loading trace points... [0.098s] Sorting trace points... [1.534s] Computing alignments... [32.897s] Deallocating buffers... [0.287s] Loading trace points... [0.062s] Sorting trace points... [1.289s] Computing alignments... [32.812s] Deallocating buffers... [0.103s] Loading trace points... [0.034s] Sorting trace points... [1.237s] Computing alignments... [32.554s] Deallocating buffers... [0.014s] Loading trace points... [0.059s] Sorting trace points... [1.233s] Computing alignments... [32.914s] Deallocating buffers... [0.014s] Loading trace points... [0.074s] Sorting trace points... [1.265s] Computing alignments... [32.869s] Deallocating buffers... [0.014s] Loading trace points... [0s] Sorting trace points... [1.094s] Computing alignments... [32.305s] Deallocating buffers... [0.016s] Loading trace points... [0s] [552.394s] Deallocating reference... [0.061s] Loading reference sequences... [30.882s] Masking reference... [32.103s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.007s] Building reference histograms... [32.958s] Allocating buffers... [0s] Processing query block 1, reference block 6/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.286s] Building query seed array... [2.044s] Computing hash join... [6.834s] Masking low complexity seeds... [0.565s] Searching alignments... [76.212s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.888s] Building query seed array... [2.701s] Computing hash join... [6.638s] Masking low complexity seeds... [0.229s] Searching alignments... [50.726s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.582s] Building query seed array... [2.953s] Computing hash join... [6.345s] Masking low complexity seeds... [0.235s] Searching alignments... [42.768s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.959s] Building query seed array... [2.342s] Computing hash join... [6.519s] Masking low complexity seeds... [0.228s] Searching alignments... [38.981s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.457s] Building query seed array... [2.059s] Computing hash join... [6.377s] Masking low complexity seeds... [0.22s] Searching alignments... [38.921s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.593s] Building query seed array... [2.437s] Computing hash join... [6.561s] Masking low complexity seeds... [0.217s] Searching alignments... [32.601s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.905s] Building query seed array... [2.543s] Computing hash join... [6.607s] Masking low complexity seeds... [0.232s] Searching alignments... [34.81s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.841s] Building query seed array... [2.157s] Computing hash join... [6.18s] Masking low complexity seeds... [0.22s] Searching alignments... [29.275s] Deallocating memory... [0s] Deallocating buffers... [1.642s] Clearing query masking... [1.6s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [6.678s] Sorting trace points... [1.26s] Computing alignments... [31.343s] Deallocating buffers... [0.015s] Loading trace points... [0.089s] Sorting trace points... [0.985s] Computing alignments... [31.836s] Deallocating buffers... [0.015s] Loading trace points... [0.172s] Sorting trace points... [1.251s] Computing alignments... [31.612s] Deallocating buffers... [0.017s] Loading trace points... [0.077s] Sorting trace points... [1.258s] Computing alignments... [32.67s] Deallocating buffers... [0.014s] Loading trace points... [0.261s] Sorting trace points... [1.429s] Computing alignments... [32.984s] Deallocating buffers... [0.221s] Loading trace points... [0.049s] Sorting trace points... [1.242s] Computing alignments... [33.105s] Deallocating buffers... [0.017s] Loading trace points... [0.071s] Sorting trace points... [1.159s] Computing alignments... [32.386s] Deallocating buffers... [0.017s] Loading trace points... [0.051s] Sorting trace points... [1.249s] Computing alignments... [32.376s] Deallocating buffers... [0.017s] Loading trace points... [0.059s] Sorting trace points... [1.229s] Computing alignments... [32.274s] Deallocating buffers... [0.014s] Loading trace points... [0.1s] Sorting trace points... [0.991s] Computing alignments... [32.259s] Deallocating buffers... [0.016s] Loading trace points... [0.072s] Sorting trace points... [1.474s] Computing alignments... [32.403s] Deallocating buffers... [0.343s] Loading trace points... [0.056s] Sorting trace points... [1.329s] Computing alignments... [32.417s] Deallocating buffers... [0.075s] Loading trace points... [0.074s] Sorting trace points... [1.217s] Computing alignments... [32.392s] Deallocating buffers... [0.013s] Loading trace points... [0.087s] Sorting trace points... [1.245s] Computing alignments... [32.68s] Deallocating buffers... [0.014s] Loading trace points... [0.075s] Sorting trace points... [1.442s] Computing alignments... [32.819s] Deallocating buffers... [0.342s] Loading trace points... [0s] Sorting trace points... [0.982s] Computing alignments... [32.289s] Deallocating buffers... [0.015s] Loading trace points... [0s] [547.004s] Deallocating reference... [0.059s] Loading reference sequences... [29.356s] Masking reference... [32.131s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.007s] Building reference histograms... [32.512s] Allocating buffers... [0s] Processing query block 1, reference block 7/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.11s] Building query seed array... [2.093s] Computing hash join... [6.875s] Masking low complexity seeds... [0.48s] Searching alignments... [79.709s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.974s] Building query seed array... [2.846s] Computing hash join... [6.722s] Masking low complexity seeds... [0.227s] Searching alignments... [51.53s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 1/2, index chunk 3/4. Building reference seed array... [14.101s] Building query seed array... [2.837s] Computing hash join... [6.277s] Masking low complexity seeds... [0.236s] Searching alignments... [44.463s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.58s] Building query seed array... [2.279s] Computing hash join... [6.802s] Masking low complexity seeds... [0.232s] Searching alignments... [40.55s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.179s] Building query seed array... [1.999s] Computing hash join... [6.47s] Masking low complexity seeds... [0.214s] Searching alignments... [40.438s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 2/2, index chunk 2/4. Building reference seed array... [13s] Building query seed array... [2.467s] Computing hash join... [6.882s] Masking low complexity seeds... [0.295s] Searching alignments... [32.699s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.736s] Building query seed array... [2.593s] Computing hash join... [6.961s] Masking low complexity seeds... [0.304s] Searching alignments... [36.421s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.55s] Building query seed array... [2.019s] Computing hash join... [6.897s] Masking low complexity seeds... [0.311s] Searching alignments... [30.237s] Deallocating memory... [0s] Deallocating buffers... [1.59s] Clearing query masking... [1.607s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [6.553s] Sorting trace points... [1.285s] Computing alignments... [31.641s] Deallocating buffers... [0.014s] Loading trace points... [0.083s] Sorting trace points... [0.966s] Computing alignments... [32.324s] Deallocating buffers... [0.024s] Loading trace points... [0.047s] Sorting trace points... [1.271s] Computing alignments... [32.072s] Deallocating buffers... [0.017s] Loading trace points... [0.047s] Sorting trace points... [1.045s] Computing alignments... [33.248s] Deallocating buffers... [0.015s] Loading trace points... [0.068s] Sorting trace points... [1.303s] Computing alignments... [33.652s] Deallocating buffers... [0.272s] Loading trace points... [0.142s] Sorting trace points... [1.27s] Computing alignments... [33.691s] Deallocating buffers... [0.018s] Loading trace points... [0.133s] Sorting trace points... [1.247s] Computing alignments... [32.972s] Deallocating buffers... [0.014s] Loading trace points... [0.073s] Sorting trace points... [1.221s] Computing alignments... [32.977s] Deallocating buffers... [0.014s] Loading trace points... [0.047s] Sorting trace points... [1.229s] Computing alignments... [32.796s] Deallocating buffers... [0.017s] Loading trace points... [0.049s] Sorting trace points... [0.899s] Computing alignments... [32.655s] Deallocating buffers... [0.015s] Loading trace points... [0.073s] Sorting trace points... [1.249s] Computing alignments... [32.86s] Deallocating buffers... [0.014s] Loading trace points... [0.063s] Sorting trace points... [1.041s] Computing alignments... [32.749s] Deallocating buffers... [0.017s] Loading trace points... [0.056s] Sorting trace points... [0.998s] Computing alignments... [32.719s] Deallocating buffers... [0.063s] Loading trace points... [0.048s] Sorting trace points... [1.277s] Computing alignments... [33.074s] Deallocating buffers... [0.017s] Loading trace points... [0.081s] Sorting trace points... [0.914s] Computing alignments... [32.927s] Deallocating buffers... [0.016s] Loading trace points... [0s] Sorting trace points... [1.411s] Computing alignments... [32.533s] Deallocating buffers... [0.142s] Loading trace points... [0s] [551.906s] Deallocating reference... [0.061s] Loading reference sequences... [29.628s] Masking reference... [30.892s] Initializing dictionary... [0.077s] Initializing temporary storage... [0.006s] Building reference histograms... [32.177s] Allocating buffers... [0s] Processing query block 1, reference block 8/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.288s] Building query seed array... [2.081s] Computing hash join... [6.43s] Masking low complexity seeds... [0.257s] Searching alignments... [78.744s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 1/2, index chunk 2/4. Building reference seed array... [13.226s] Building query seed array... [3.022s] Computing hash join... [6.617s] Masking low complexity seeds... [0.26s] Searching alignments... [52.829s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 1/2, index chunk 3/4. Building reference seed array... [14.094s] Building query seed array... [2.912s] Computing hash join... [6.562s] Masking low complexity seeds... [0.233s] Searching alignments... [44.05s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.289s] Building query seed array... [2.297s] Computing hash join... [6.973s] Masking low complexity seeds... [0.363s] Searching alignments... [40.109s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.219s] Building query seed array... [2.064s] Computing hash join... [6.349s] Masking low complexity seeds... [0.209s] Searching alignments... [40.108s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.628s] Building query seed array... [2.38s] Computing hash join... [6.262s] Masking low complexity seeds... [0.214s] Searching alignments... [32.319s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.654s] Building query seed array... [2.575s] Computing hash join... [6.312s] Masking low complexity seeds... [0.21s] Searching alignments... [34.811s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.571s] Building query seed array... [2.072s] Computing hash join... [6.271s] Masking low complexity seeds... [0.207s] Searching alignments... [29.918s] Deallocating memory... [0s] Deallocating buffers... [1.751s] Clearing query masking... [1.612s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [6.471s] Sorting trace points... [1.269s] Computing alignments... [31.596s] Deallocating buffers... [0.015s] Loading trace points... [0.095s] Sorting trace points... [0.91s] Computing alignments... [32.205s] Deallocating buffers... [0.023s] Loading trace points... [0.04s] Sorting trace points... [1.266s] Computing alignments... [32.012s] Deallocating buffers... [0.017s] Loading trace points... [0.056s] Sorting trace points... [0.964s] Computing alignments... [33.057s] Deallocating buffers... [0.016s] Loading trace points... [0.916s] Sorting trace points... [1.278s] Computing alignments... [33.366s] Deallocating buffers... [0.019s] Loading trace points... [0.124s] Sorting trace points... [1.279s] Computing alignments... [33.594s] Deallocating buffers... [0.018s] Loading trace points... [0.112s] Sorting trace points... [0.898s] Computing alignments... [32.889s] Deallocating buffers... [0.016s] Loading trace points... [0.085s] Sorting trace points... [1.266s] Computing alignments... [32.924s] Deallocating buffers... [0.014s] Loading trace points... [0.065s] Sorting trace points... [1.253s] Computing alignments... [32.772s] Deallocating buffers... [0.017s] Loading trace points... [0.078s] Sorting trace points... [1.002s] Computing alignments... [32.627s] Deallocating buffers... [0.015s] Loading trace points... [0.117s] Sorting trace points... [1.22s] Computing alignments... [32.84s] Deallocating buffers... [0.017s] Loading trace points... [0.274s] Sorting trace points... [1.439s] Computing alignments... [32.827s] Deallocating buffers... [0.149s] Loading trace points... [0.041s] Sorting trace points... [1.259s] Computing alignments... [32.763s] Deallocating buffers... [0.014s] Loading trace points... [0.159s] Sorting trace points... [1.236s] Computing alignments... [33.222s] Deallocating buffers... [0.015s] Loading trace points... [0.091s] Sorting trace points... [1.251s] Computing alignments... [33.073s] Deallocating buffers... [0.014s] Loading trace points... [0s] Sorting trace points... [1.187s] Computing alignments... [32.576s] Deallocating buffers... [0.017s] Loading trace points... [0s] [552.617s] Deallocating reference... [0.056s] Loading reference sequences... [31.815s] Masking reference... [30.943s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.007s] Building reference histograms... [32.33s] Allocating buffers... [0s] Processing query block 1, reference block 9/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.201s] Building query seed array... [2.039s] Computing hash join... [7.004s] Masking low complexity seeds... [0.435s] Searching alignments... [78.462s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 1/2, index chunk 2/4. Building reference seed array... [13.125s] Building query seed array... [2.964s] Computing hash join... [6.518s] Masking low complexity seeds... [0.24s] Searching alignments... [53.15s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.886s] Building query seed array... [2.87s] Computing hash join... [6.709s] Masking low complexity seeds... [0.232s] Searching alignments... [44.107s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.317s] Building query seed array... [2.362s] Computing hash join... [7.084s] Masking low complexity seeds... [0.353s] Searching alignments... [40.146s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.448s] Building query seed array... [2.131s] Computing hash join... [6.182s] Masking low complexity seeds... [0.205s] Searching alignments... [40.224s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.742s] Building query seed array... [2.372s] Computing hash join... [6.292s] Masking low complexity seeds... [0.224s] Searching alignments... [32.484s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.732s] Building query seed array... [2.518s] Computing hash join... [6.112s] Masking low complexity seeds... [0.2s] Searching alignments... [35.833s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.471s] Building query seed array... [2.163s] Computing hash join... [6.275s] Masking low complexity seeds... [0.222s] Searching alignments... [30.478s] Deallocating memory... [0s] Deallocating buffers... [1.74s] Clearing query masking... [1.595s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [6.688s] Sorting trace points... [1.313s] Computing alignments... [31.76s] Deallocating buffers... [0.015s] Loading trace points... [0.067s] Sorting trace points... [1.26s] Computing alignments... [32.128s] Deallocating buffers... [0.022s] Loading trace points... [0.059s] Sorting trace points... [1.12s] Computing alignments... [31.775s] Deallocating buffers... [0.014s] Loading trace points... [0.066s] Sorting trace points... [0.891s] Computing alignments... [32.977s] Deallocating buffers... [0.016s] Loading trace points... [0.133s] Sorting trace points... [1.403s] Computing alignments... [33.305s] Deallocating buffers... [0.178s] Loading trace points... [0.134s] Sorting trace points... [1.504s] Computing alignments... [33.57s] Deallocating buffers... [0.182s] Loading trace points... [0.108s] Sorting trace points... [1.54s] Computing alignments... [32.744s] Deallocating buffers... [0.177s] Loading trace points... [0.103s] Sorting trace points... [1.416s] Computing alignments... [32.813s] Deallocating buffers... [0.179s] Loading trace points... [0.07s] Sorting trace points... [1.3s] Computing alignments... [32.667s] Deallocating buffers... [0.017s] Loading trace points... [0.064s] Sorting trace points... [1.288s] Computing alignments... [32.592s] Deallocating buffers... [0.014s] Loading trace points... [0.054s] Sorting trace points... [1.285s] Computing alignments... [32.798s] Deallocating buffers... [0.017s] Loading trace points... [0.056s] Sorting trace points... [1.098s] Computing alignments... [32.756s] Deallocating buffers... [0.017s] Loading trace points... [0.042s] Sorting trace points... [0.995s] Computing alignments... [32.753s] Deallocating buffers... [0.016s] Loading trace points... [0.06s] Sorting trace points... [1.176s] Computing alignments... [33.021s] Deallocating buffers... [0.015s] Loading trace points... [0.098s] Sorting trace points... [1.258s] Computing alignments... [33.059s] Deallocating buffers... [0.017s] Loading trace points... [0s] Sorting trace points... [1.249s] Computing alignments... [32.521s] Deallocating buffers... [0.014s] Loading trace points... [0s] [552.316s] Deallocating reference... [0.064s] Loading reference sequences... [30.957s] Masking reference... [32.111s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.007s] Building reference histograms... [32.335s] Allocating buffers... [0.001s] Processing query block 1, reference block 10/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.301s] Building query seed array... [2.07s] Computing hash join... [6.825s] Masking low complexity seeds... [0.537s] Searching alignments... [80.017s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.683s] Building query seed array... [2.987s] Computing hash join... [6.785s] Masking low complexity seeds... [0.302s] Searching alignments... [51.745s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 1/2, index chunk 3/4. Building reference seed array... [14.304s] Building query seed array... [2.77s] Computing hash join... [6.643s] Masking low complexity seeds... [0.23s] Searching alignments... [43.113s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.353s] Building query seed array... [2.32s] Computing hash join... [6.89s] Masking low complexity seeds... [0.248s] Searching alignments... [39.319s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.639s] Building query seed array... [2.076s] Computing hash join... [6.575s] Masking low complexity seeds... [0.243s] Searching alignments... [40.878s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.309s] Building query seed array... [2.26s] Computing hash join... [6.94s] Masking low complexity seeds... [0.268s] Searching alignments... [32.778s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.658s] Building query seed array... [2.481s] Computing hash join... [7.043s] Masking low complexity seeds... [0.314s] Searching alignments... [36.088s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.389s] Building query seed array... [2.052s] Computing hash join... [6.952s] Masking low complexity seeds... [0.336s] Searching alignments... [29.781s] Deallocating memory... [0s] Deallocating buffers... [1.741s] Clearing query masking... [1.613s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [6.445s] Sorting trace points... [1.302s] Computing alignments... [31.682s] Deallocating buffers... [0.016s] Loading trace points... [0.072s] Sorting trace points... [1.218s] Computing alignments... [32.262s] Deallocating buffers... [0.021s] Loading trace points... [0.041s] Sorting trace points... [1.286s] Computing alignments... [31.998s] Deallocating buffers... [0.014s] Loading trace points... [0.076s] Sorting trace points... [1.249s] Computing alignments... [33.143s] Deallocating buffers... [0.02s] Loading trace points... [0.091s] Sorting trace points... [1.258s] Computing alignments... [33.461s] Deallocating buffers... [0.024s] Loading trace points... [0.059s] Sorting trace points... [1.277s] Computing alignments... [33.616s] Deallocating buffers... [0.018s] Loading trace points... [0.07s] Sorting trace points... [1.11s] Computing alignments... [32.839s] Deallocating buffers... [0.016s] Loading trace points... [0.071s] Sorting trace points... [1.223s] Computing alignments... [32.857s] Deallocating buffers... [0.018s] Loading trace points... [0.068s] Sorting trace points... [1.117s] Computing alignments... [32.713s] Deallocating buffers... [0.016s] Loading trace points... [0.103s] Sorting trace points... [0.94s] Computing alignments... [32.598s] Deallocating buffers... [0.015s] Loading trace points... [0.078s] Sorting trace points... [1.049s] Computing alignments... [32.816s] Deallocating buffers... [0.074s] Loading trace points... [0.053s] Sorting trace points... [1.087s] Computing alignments... [32.811s] Deallocating buffers... [0.021s] Loading trace points... [0.036s] Sorting trace points... [1.138s] Computing alignments... [32.737s] Deallocating buffers... [0.014s] Loading trace points... [0.037s] Sorting trace points... [1.482s] Computing alignments... [33.028s] Deallocating buffers... [0.111s] Loading trace points... [0.103s] Sorting trace points... [1.489s] Computing alignments... [33.094s] Deallocating buffers... [0.294s] Loading trace points... [0s] Sorting trace points... [1.287s] Computing alignments... [32.437s] Deallocating buffers... [0.028s] Loading trace points... [0s] [552.02s] Deallocating reference... [0.065s] Loading reference sequences... [33.546s] Masking reference... [31.467s] Initializing dictionary... [0.079s] Initializing temporary storage... [0.007s] Building reference histograms... [32.488s] Allocating buffers... [0s] Processing query block 1, reference block 11/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.417s] Building query seed array... [2.092s] Computing hash join... [6.32s] Masking low complexity seeds... [0.227s] Searching alignments... [75.081s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.359s] Building query seed array... [2.922s] Computing hash join... [5.718s] Masking low complexity seeds... [0.266s] Searching alignments... [53.56s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.969s] Building query seed array... [2.745s] Computing hash join... [5.913s] Masking low complexity seeds... [0.22s] Searching alignments... [44.782s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.583s] Building query seed array... [2.401s] Computing hash join... [6.158s] Masking low complexity seeds... [0.276s] Searching alignments... [40.296s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.444s] Building query seed array... [2.076s] Computing hash join... [5.946s] Masking low complexity seeds... [0.252s] Searching alignments... [40.12s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.907s] Building query seed array... [2.302s] Computing hash join... [5.852s] Masking low complexity seeds... [0.227s] Searching alignments... [33.457s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.767s] Building query seed array... [2.59s] Computing hash join... [5.721s] Masking low complexity seeds... [0.227s] Searching alignments... [35.241s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.695s] Building query seed array... [2.163s] Computing hash join... [5.803s] Masking low complexity seeds... [0.207s] Searching alignments... [30.427s] Deallocating memory... [0s] Deallocating buffers... [1.717s] Clearing query masking... [1.591s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [6.398s] Sorting trace points... [1.259s] Computing alignments... [31.808s] Deallocating buffers... [0.013s] Loading trace points... [1.064s] Sorting trace points... [0.968s] Computing alignments... [32.185s] Deallocating buffers... [0.017s] Loading trace points... [0s] Sorting trace points... [1.228s] Computing alignments... [32.474s] Deallocating buffers... [0.024s] Loading trace points... [0.127s] Sorting trace points... [1.24s] Computing alignments... [33.433s] Deallocating buffers... [0.015s] Loading trace points... [0.092s] Sorting trace points... [1.313s] Computing alignments... [33.975s] Deallocating buffers... [0.017s] Loading trace points... [0.051s] Sorting trace points... [0.923s] Computing alignments... [33.842s] Deallocating buffers... [0.016s] Loading trace points... [0.088s] Sorting trace points... [1.166s] Computing alignments... [32.939s] Deallocating buffers... [0.014s] Loading trace points... [0.04s] Sorting trace points... [1.239s] Computing alignments... [33.125s] Deallocating buffers... [0.017s] Loading trace points... [0.045s] Sorting trace points... [1.203s] Computing alignments... [32.686s] Deallocating buffers... [0.108s] Loading trace points... [0.052s] Sorting trace points... [1.163s] Computing alignments... [32.709s] Deallocating buffers... [0.015s] Loading trace points... [0.074s] Sorting trace points... [1.256s] Computing alignments... [33.123s] Deallocating buffers... [0.017s] Loading trace points... [0.05s] Sorting trace points... [1.123s] Computing alignments... [33.002s] Deallocating buffers... [0.022s] Loading trace points... [0.001s] Sorting trace points... [1.054s] Computing alignments... [32.769s] Deallocating buffers... [0.015s] Loading trace points... [0s] Sorting trace points... [1.197s] Computing alignments... [32.95s] Deallocating buffers... [0.017s] Loading trace points... [0.075s] Sorting trace points... [1.221s] Computing alignments... [33.058s] Deallocating buffers... [0.017s] Loading trace points... [0s] Sorting trace points... [1.233s] Computing alignments... [32.635s] Deallocating buffers... [0.017s] Loading trace points... [0s] [554.2s] Deallocating reference... [0.464s] Loading reference sequences... [29.378s] Masking reference... [32.13s] Initializing dictionary... [0.079s] Initializing temporary storage... [0.007s] Building reference histograms... [32.818s] Allocating buffers... [0s] Processing query block 1, reference block 12/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.114s] Building query seed array... [2.001s] Computing hash join... [7.098s] Masking low complexity seeds... [0.243s] Searching alignments... [80.518s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.906s] Building query seed array... [2.927s] Computing hash join... [6.664s] Masking low complexity seeds... [0.241s] Searching alignments... [53.021s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 1/2, index chunk 3/4. Building reference seed array... [14.054s] Building query seed array... [2.674s] Computing hash join... [6.323s] Masking low complexity seeds... [0.244s] Searching alignments... [45.254s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.75s] Building query seed array... [2.266s] Computing hash join... [6.924s] Masking low complexity seeds... [0.246s] Searching alignments... [40.783s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.407s] Building query seed array... [2.07s] Computing hash join... [6.692s] Masking low complexity seeds... [0.254s] Searching alignments... [40.001s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.605s] Building query seed array... [2.493s] Computing hash join... [7.078s] Masking low complexity seeds... [0.343s] Searching alignments... [32.407s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.845s] Building query seed array... [2.35s] Computing hash join... [6.842s] Masking low complexity seeds... [0.346s] Searching alignments... [35.984s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.633s] Building query seed array... [2.038s] Computing hash join... [6.921s] Masking low complexity seeds... [0.343s] Searching alignments... [30.421s] Deallocating memory... [0s] Deallocating buffers... [1.836s] Clearing query masking... [1.585s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [6.539s] Sorting trace points... [1.337s] Computing alignments... [31.59s] Deallocating buffers... [0.014s] Loading trace points... [0.076s] Sorting trace points... [0.894s] Computing alignments... [32.32s] Deallocating buffers... [0.015s] Loading trace points... [0.048s] Sorting trace points... [1.239s] Computing alignments... [31.846s] Deallocating buffers... [0.017s] Loading trace points... [0.058s] Sorting trace points... [1.233s] Computing alignments... [32.972s] Deallocating buffers... [0.017s] Loading trace points... [0.001s] Sorting trace points... [1.273s] Computing alignments... [33.22s] Deallocating buffers... [0.018s] Loading trace points... [0.145s] Sorting trace points... [1.295s] Computing alignments... [33.515s] Deallocating buffers... [0.273s] Loading trace points... [0.109s] Sorting trace points... [1.265s] Computing alignments... [32.8s] Deallocating buffers... [0.014s] Loading trace points... [0.048s] Sorting trace points... [0.998s] Computing alignments... [32.751s] Deallocating buffers... [0.016s] Loading trace points... [0.054s] Sorting trace points... [1.557s] Computing alignments... [32.863s] Deallocating buffers... [0.37s] Loading trace points... [0.099s] Sorting trace points... [1.411s] Computing alignments... [32.606s] Deallocating buffers... [0.104s] Loading trace points... [0.058s] Sorting trace points... [1.236s] Computing alignments... [32.867s] Deallocating buffers... [0.024s] Loading trace points... [0.084s] Sorting trace points... [1.02s] Computing alignments... [32.813s] Deallocating buffers... [0.017s] Loading trace points... [0.044s] Sorting trace points... [1.019s] Computing alignments... [32.789s] Deallocating buffers... [0.016s] Loading trace points... [0.036s] Sorting trace points... [1.007s] Computing alignments... [33.075s] Deallocating buffers... [0.016s] Loading trace points... [0.065s] Sorting trace points... [0.949s] Computing alignments... [33.013s] Deallocating buffers... [0.019s] Loading trace points... [0s] Sorting trace points... [1.214s] Computing alignments... [32.556s] Deallocating buffers... [0.017s] Loading trace points... [0s] [551.279s] Deallocating reference... [0.074s] Loading reference sequences... [29.285s] Masking reference... [30.9s] Initializing dictionary... [0.077s] Initializing temporary storage... [0.006s] Building reference histograms... [32.731s] Allocating buffers... [0.001s] Processing query block 1, reference block 13/14, shape 1/2, index chunk 1/4. Building reference seed array... [9.82s] Building query seed array... [2.058s] Computing hash join... [7.114s] Masking low complexity seeds... [0.386s] Searching alignments... [80.994s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 1/2, index chunk 2/4. Building reference seed array... [13.059s] Building query seed array... [2.756s] Computing hash join... [6.754s] Masking low complexity seeds... [0.24s] Searching alignments... [53.083s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.619s] Building query seed array... [2.81s] Computing hash join... [6.256s] Masking low complexity seeds... [0.234s] Searching alignments... [43.616s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.285s] Building query seed array... [2.229s] Computing hash join... [6.628s] Masking low complexity seeds... [0.262s] Searching alignments... [40.32s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.435s] Building query seed array... [2.109s] Computing hash join... [6.507s] Masking low complexity seeds... [0.232s] Searching alignments... [40.536s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.436s] Building query seed array... [2.311s] Computing hash join... [6.728s] Masking low complexity seeds... [0.24s] Searching alignments... [32.245s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.07s] Building query seed array... [2.477s] Computing hash join... [6.613s] Masking low complexity seeds... [0.231s] Searching alignments... [35.21s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.353s] Building query seed array... [1.976s] Computing hash join... [6.355s] Masking low complexity seeds... [0.243s] Searching alignments... [30.477s] Deallocating memory... [0s] Deallocating buffers... [2.05s] Clearing query masking... [1.6s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [6.482s] Sorting trace points... [1.288s] Computing alignments... [31.607s] Deallocating buffers... [0.014s] Loading trace points... [0.072s] Sorting trace points... [1.22s] Computing alignments... [32.035s] Deallocating buffers... [0.021s] Loading trace points... [0.033s] Sorting trace points... [1.144s] Computing alignments... [31.76s] Deallocating buffers... [0.016s] Loading trace points... [0.055s] Sorting trace points... [1.16s] Computing alignments... [33.106s] Deallocating buffers... [0.017s] Loading trace points... [0.079s] Sorting trace points... [1.372s] Computing alignments... [33.404s] Deallocating buffers... [0.071s] Loading trace points... [0.061s] Sorting trace points... [1.288s] Computing alignments... [33.652s] Deallocating buffers... [0.015s] Loading trace points... [0.079s] Sorting trace points... [1.023s] Computing alignments... [32.888s] Deallocating buffers... [0.016s] Loading trace points... [0.054s] Sorting trace points... [1.35s] Computing alignments... [32.869s] Deallocating buffers... [0.268s] Loading trace points... [0.074s] Sorting trace points... [1.438s] Computing alignments... [32.691s] Deallocating buffers... [0.11s] Loading trace points... [0.069s] Sorting trace points... [1.391s] Computing alignments... [32.583s] Deallocating buffers... [0.252s] Loading trace points... [0.069s] Sorting trace points... [1.039s] Computing alignments... [32.867s] Deallocating buffers... [0.021s] Loading trace points... [0.1s] Sorting trace points... [0.962s] Computing alignments... [32.685s] Deallocating buffers... [0.023s] Loading trace points... [0.09s] Sorting trace points... [0.902s] Computing alignments... [32.718s] Deallocating buffers... [0.015s] Loading trace points... [0.058s] Sorting trace points... [1.31s] Computing alignments... [32.902s] Deallocating buffers... [0.014s] Loading trace points... [0.072s] Sorting trace points... [1.03s] Computing alignments... [32.999s] Deallocating buffers... [0.016s] Loading trace points... [0s] Sorting trace points... [0.949s] Computing alignments... [32.498s] Deallocating buffers... [0.015s] Loading trace points... [0s] [550.777s] Deallocating reference... [0.063s] Loading reference sequences... [23.56s] Masking reference... [26.08s] Initializing dictionary... [0.063s] Initializing temporary storage... [0.008s] Building reference histograms... [26.31s] Allocating buffers... [0s] Processing query block 1, reference block 14/14, shape 1/2, index chunk 1/4. Building reference seed array... [8.521s] Building query seed array... [2.101s] Computing hash join... [4.709s] Masking low complexity seeds... [0.213s] Searching alignments... [64.133s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 1/2, index chunk 2/4. Building reference seed array... [10.188s] Building query seed array... [2.85s] Computing hash join... [5.073s] Masking low complexity seeds... [0.217s] Searching alignments... [43.968s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 1/2, index chunk 3/4. Building reference seed array... [10.965s] Building query seed array... [2.827s] Computing hash join... [5.495s] Masking low complexity seeds... [0.22s] Searching alignments... [36.476s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 1/2, index chunk 4/4. Building reference seed array... [8.165s] Building query seed array... [2.362s] Computing hash join... [5.016s] Masking low complexity seeds... [0.218s] Searching alignments... [33.339s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 2/2, index chunk 1/4. Building reference seed array... [8.333s] Building query seed array... [1.98s] Computing hash join... [4.906s] Masking low complexity seeds... [0.212s] Searching alignments... [33.059s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 2/2, index chunk 2/4. Building reference seed array... [9.761s] Building query seed array... [2.455s] Computing hash join... [4.857s] Masking low complexity seeds... [0.196s] Searching alignments... [26.646s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 2/2, index chunk 3/4. Building reference seed array... [10.977s] Building query seed array... [2.535s] Computing hash join... [4.955s] Masking low complexity seeds... [0.216s] Searching alignments... [29.099s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 2/2, index chunk 4/4. Building reference seed array... [8.076s] Building query seed array... [2.04s] Computing hash join... [5.095s] Masking low complexity seeds... [0.212s] Searching alignments... [24.961s] Deallocating memory... [0s] Deallocating buffers... [0.769s] Clearing query masking... [1.515s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [10.732s] Sorting trace points... [2.054s] Computing alignments... [50.9s] Deallocating buffers... [0.023s] Loading trace points... [0.123s] Sorting trace points... [1.943s] Computing alignments... [51.692s] Deallocating buffers... [0.151s] Loading trace points... [0.175s] Sorting trace points... [2.35s] Computing alignments... [53.032s] Deallocating buffers... [0.259s] Loading trace points... [0.19s] Sorting trace points... [1.889s] Computing alignments... [52.093s] Deallocating buffers... [0.027s] Loading trace points... [0.176s] Sorting trace points... [1.709s] Computing alignments... [52.364s] Deallocating buffers... [0.025s] Loading trace points... [0.119s] Sorting trace points... [2.375s] Computing alignments... [52.202s] Deallocating buffers... [0.435s] Loading trace points... [0.138s] Sorting trace points... [1.985s] Computing alignments... [52.223s] Deallocating buffers... [0.023s] Loading trace points... [0s] Sorting trace points... [1.629s] Computing alignments... [51.682s] Deallocating buffers... [0.025s] Loading trace points... [0s] [444.821s] Deallocating reference... [0.053s] Loading reference sequences... [0.089s] Deallocating buffers... [0s] Joining output blocks... Joining output blocks... [2307.46s] [2307.46s] Deallocating queries... [0.072s] Loading query sequences... [0s] Closing the input file... [0s] Closing the output file... Loading dictionary... [5.735s] [6.86s] Closing the database... [0s] Cleaning up... [0s] Total time = 18761s Reported 2451900966 pairwise alignments, 2451900966 HSPs. 13026695 queries aligned. DIAMOND BLASTx on /gscratch/srlab/sam/data/P_verrucosa/RNAseq/C20_R1.fastp-trim.20230215.fq.gz complete: C20_R1.blastx.meganized.daa Now MEGANizing C20_R1.blastx.meganized.daa Version MEGAN Community Edition (version 6.22.0, built 19 Feb 2022) Author(s) Daniel H. Huson Copyright (C) 2022 Daniel H. Huson. This program comes with ABSOLUTELY NO WARRANTY. Java version: 17.0.2 Functional classifications to use: EC, EGGNOG, GTDB, INTERPRO2GO, SEED Loading ncbi.map: 2,396,736 Loading ncbi.tre: 2,396,740 Loading ec.map: 8,200 Loading ec.tre: 8,204 Loading eggnog.map: 30,875 Loading eggnog.tre: 30,986 Loading gtdb.map: 240,103 Loading gtdb.tre: 240,107 Loading interpro2go.map: 14,242 Loading interpro2go.tre: 28,907 Loading seed.map: 961 Loading seed.tre: 962 Meganizing: C20_R1.blastx.meganized.daa Meganizing init Annotating DAA file using FAST mode (accession database and first accession per line) Annotating references 10% 20% 30% 40% 50% 60% 70% 100% (556.0s) Writing 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (1.8s) Binning reads Initializing... Initializing binning... Using 'Naive LCA' algorithm for binning: Taxonomy Using Best-Hit algorithm for binning: SEED Using Best-Hit algorithm for binning: EGGNOG Using 'Naive LCA' algorithm for binning: GTDB Using Best-Hit algorithm for binning: EC Using Best-Hit algorithm for binning: INTERPRO2GO Binning reads... Binning reads Analyzing alignments 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (4,759.1s) Total reads: 13,026,695 With hits: 13,026,695 Alignments: 2,434,967,629 Assig. Taxonomy: 11,973,012 Assig. SEED: 105,122 Assig. EGGNOG: 46,248 Assig. GTDB: 374,105 Assig. EC: 2,074,115 Assig. INTERPRO2GO: 1,165,880 MinSupport set to: 6513 Binning reads Applying min-support & disabled filter to Taxonomy... 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (0.5s) Min-supp. changes: 4,045 Binning reads Applying min-support & disabled filter to GTDB... 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (10.8s) Min-supp. changes: 2,960 Binning reads Writing classification tables 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (37.4s) Binning reads Syncing 100% (0.3s) Class. Taxonomy: 73 Class. SEED: 493 Class. EGGNOG: 1,735 Class. GTDB: 17 Class. EC: 2,320 Class. INTERPRO2GO: 7,994 Total time: 5,375s Peak memory: 35.1 of 195.3G MEGANization of C20_R1.blastx.meganized.daa completed. Generating MD5 checksum for /gscratch/srlab/sam/data/P_verrucosa/RNAseq/C20_R2.fastp-trim.20230215.fq.gz... 21598d567e28774bc6f1afc5ca67de76 /gscratch/srlab/sam/data/P_verrucosa/RNAseq/C20_R2.fastp-trim.20230215.fq.gz Running DIAMOND BLASTx on /gscratch/srlab/sam/data/P_verrucosa/RNAseq/C20_R2.fastp-trim.20230215.fq.gz. diamond v2.1.1.155 (C) Max Planck Society for the Advancement of Science Documentation, support and updates available at http://www.diamondsearch.org Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021) #CPU threads: 40 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: Percentage range of top alignment score to report hits: 5 Opening the database... [0.352s] Database: /gscratch/srlab/blastdbs/20230215-ncbi-nr/20230215-ncbi-nr.dmnd (type: Diamond database, sequences: 526308523, letters: 207134680681) Block size = 15000000000 Opening the input file... [0.74s] Opening the output file... [0s] Loading query sequences... [74.243s] Masking queries... [18.816s] Algorithm: Double-indexed Building query histograms... [22.376s] Loading reference sequences... [32.261s] Masking reference... [31.098s] Initializing dictionary... [0.079s] Initializing temporary storage... [0.008s] Building reference histograms... [32.431s] Allocating buffers... [0s] Processing query block 1, reference block 1/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.619s] Building query seed array... [2.059s] Computing hash join... [6.98s] Masking low complexity seeds... [0.264s] Searching alignments... [79.358s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.577s] Building query seed array... [3.104s] Computing hash join... [6.68s] Masking low complexity seeds... [0.286s] Searching alignments... [54.239s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.542s] Building query seed array... [2.825s] Computing hash join... [6.558s] Masking low complexity seeds... [0.263s] Searching alignments... [44.547s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 1/2, index chunk 4/4. Building reference seed array... [9.913s] Building query seed array... [2.186s] Computing hash join... [6.967s] Masking low complexity seeds... [0.413s] Searching alignments... [40.07s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.348s] Building query seed array... [2.045s] Computing hash join... [6.515s] Masking low complexity seeds... [0.261s] Searching alignments... [44.789s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.625s] Building query seed array... [2.406s] Computing hash join... [6.406s] Masking low complexity seeds... [0.26s] Searching alignments... [33.726s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.502s] Building query seed array... [2.441s] Computing hash join... [6.5s] Masking low complexity seeds... [0.258s] Searching alignments... [37.21s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.007s] Building query seed array... [2.159s] Computing hash join... [6.371s] Masking low complexity seeds... [0.251s] Searching alignments... [32.185s] Deallocating memory... [0s] Deallocating buffers... [1.254s] Clearing query masking... [1.709s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [6.682s] Sorting trace points... [1.039s] Computing alignments... [31.764s] Deallocating buffers... [0.014s] Loading trace points... [0.07s] Sorting trace points... [1.014s] Computing alignments... [31.998s] Deallocating buffers... [0.022s] Loading trace points... [0.121s] Sorting trace points... [0.952s] Computing alignments... [31.834s] Deallocating buffers... [0.015s] Loading trace points... [0.074s] Sorting trace points... [1.258s] Computing alignments... [33.06s] Deallocating buffers... [0.014s] Loading trace points... [0.074s] Sorting trace points... [0.903s] Computing alignments... [33.963s] Deallocating buffers... [0.024s] Loading trace points... [0.116s] Sorting trace points... [1.268s] Computing alignments... [33.671s] Deallocating buffers... [0.015s] Loading trace points... [0.112s] Sorting trace points... [1.246s] Computing alignments... [33.158s] Deallocating buffers... [0.017s] Loading trace points... [0.065s] Sorting trace points... [1.257s] Computing alignments... [32.761s] Deallocating buffers... [0.014s] Loading trace points... [0.38s] Sorting trace points... [1.056s] Computing alignments... [33.035s] Deallocating buffers... [0.016s] Loading trace points... [0.087s] Sorting trace points... [1.001s] Computing alignments... [33.501s] Deallocating buffers... [0.016s] Loading trace points... [0.067s] Sorting trace points... [1.3s] Computing alignments... [33.789s] Deallocating buffers... [0.018s] Loading trace points... [0.084s] Sorting trace points... [1.123s] Computing alignments... [34.163s] Deallocating buffers... [0.015s] Loading trace points... [0.042s] Sorting trace points... [1.288s] Computing alignments... [33.842s] Deallocating buffers... [0.018s] Loading trace points... [0.297s] Sorting trace points... [1.338s] Computing alignments... [33.943s] Deallocating buffers... [0.018s] Loading trace points... [0.189s] Sorting trace points... [1.064s] Computing alignments... [34.123s] Deallocating buffers... [0.016s] Loading trace points... [0s] Sorting trace points... [1.282s] Computing alignments... [33.497s] Deallocating buffers... [0.014s] Loading trace points... [0s] [559.462s] Deallocating reference... [0.063s] Loading reference sequences... [57.704s] Masking reference... [31.428s] Initializing dictionary... [0.077s] Initializing temporary storage... [0.008s] Building reference histograms... [32.452s] Allocating buffers... [0s] Processing query block 1, reference block 2/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.276s] Building query seed array... [2.09s] Computing hash join... [6.636s] Masking low complexity seeds... [0.281s] Searching alignments... [109.669s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.725s] Building query seed array... [2.815s] Computing hash join... [6.771s] Masking low complexity seeds... [0.263s] Searching alignments... [62.45s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.755s] Building query seed array... [2.926s] Computing hash join... [6.692s] Masking low complexity seeds... [0.267s] Searching alignments... [50.395s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.488s] Building query seed array... [2.344s] Computing hash join... [6.628s] Masking low complexity seeds... [0.27s] Searching alignments... [44.603s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.201s] Building query seed array... [2.035s] Computing hash join... [6.446s] Masking low complexity seeds... [0.247s] Searching alignments... [44.481s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.499s] Building query seed array... [2.385s] Computing hash join... [6.3s] Masking low complexity seeds... [0.242s] Searching alignments... [35.146s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.126s] Building query seed array... [2.441s] Computing hash join... [6.359s] Masking low complexity seeds... [0.25s] Searching alignments... [37.45s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.186s] Building query seed array... [2.071s] Computing hash join... [6.247s] Masking low complexity seeds... [0.249s] Searching alignments... [30.278s] Deallocating memory... [0s] Deallocating buffers... [1.274s] Clearing query masking... [1.601s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [7.265s] Sorting trace points... [1.119s] Computing alignments... [31.552s] Deallocating buffers... [0.016s] Loading trace points... [0.075s] Sorting trace points... [1.182s] Computing alignments... [31.959s] Deallocating buffers... [0.024s] Loading trace points... [0.111s] Sorting trace points... [1.205s] Computing alignments... [31.612s] Deallocating buffers... [0.013s] Loading trace points... [0.091s] Sorting trace points... [1.169s] Computing alignments... [32.741s] Deallocating buffers... [0.024s] Loading trace points... [0.069s] Sorting trace points... [1.187s] Computing alignments... [34.08s] Deallocating buffers... [0.036s] Loading trace points... [0.101s] Sorting trace points... [1.189s] Computing alignments... [33.545s] Deallocating buffers... [0.017s] Loading trace points... [0.852s] Sorting trace points... [1.297s] Computing alignments... [33.315s] Deallocating buffers... [0.014s] Loading trace points... [0.072s] Sorting trace points... [1.179s] Computing alignments... [33.044s] Deallocating buffers... [0.017s] Loading trace points... [0.089s] Sorting trace points... [1.24s] Computing alignments... [33.317s] Deallocating buffers... [0.017s] Loading trace points... [0.083s] Sorting trace points... [1.03s] Computing alignments... [33.455s] Deallocating buffers... [0.016s] Loading trace points... [0.101s] Sorting trace points... [0.92s] Computing alignments... [33.699s] Deallocating buffers... [0.023s] Loading trace points... [0.105s] Sorting trace points... [1.269s] Computing alignments... [33.727s] Deallocating buffers... [0.025s] Loading trace points... [0.07s] Sorting trace points... [1.237s] Computing alignments... [33.526s] Deallocating buffers... [0.025s] Loading trace points... [0.064s] Sorting trace points... [0.952s] Computing alignments... [33.743s] Deallocating buffers... [0.016s] Loading trace points... [0.089s] Sorting trace points... [1.138s] Computing alignments... [33.912s] Deallocating buffers... [0.018s] Loading trace points... [0s] Sorting trace points... [1.273s] Computing alignments... [33.158s] Deallocating buffers... [0.014s] Loading trace points... [0s] [558.847s] Deallocating reference... [0.07s] Loading reference sequences... [29.289s] Masking reference... [32.177s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.008s] Building reference histograms... [32.825s] Allocating buffers... [0s] Processing query block 1, reference block 3/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.268s] Building query seed array... [2.027s] Computing hash join... [7.011s] Masking low complexity seeds... [0.43s] Searching alignments... [79.674s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.542s] Building query seed array... [2.676s] Computing hash join... [6.822s] Masking low complexity seeds... [0.265s] Searching alignments... [52.301s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.411s] Building query seed array... [2.703s] Computing hash join... [6.541s] Masking low complexity seeds... [0.262s] Searching alignments... [44.847s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.331s] Building query seed array... [2.218s] Computing hash join... [6.882s] Masking low complexity seeds... [0.275s] Searching alignments... [41.516s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.104s] Building query seed array... [1.968s] Computing hash join... [6.823s] Masking low complexity seeds... [0.301s] Searching alignments... [45.312s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.3s] Building query seed array... [2.259s] Computing hash join... [6.547s] Masking low complexity seeds... [0.254s] Searching alignments... [33.414s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.734s] Building query seed array... [2.439s] Computing hash join... [6.613s] Masking low complexity seeds... [0.263s] Searching alignments... [37.842s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.52s] Building query seed array... [2.067s] Computing hash join... [6.382s] Masking low complexity seeds... [0.259s] Searching alignments... [31.502s] Deallocating memory... [0s] Deallocating buffers... [1.277s] Clearing query masking... [1.601s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [6.488s] Sorting trace points... [1.303s] Computing alignments... [31.98s] Deallocating buffers... [0.016s] Loading trace points... [0.043s] Sorting trace points... [1.211s] Computing alignments... [32.004s] Deallocating buffers... [0.015s] Loading trace points... [0.092s] Sorting trace points... [1.25s] Computing alignments... [31.78s] Deallocating buffers... [0.017s] Loading trace points... [0.062s] Sorting trace points... [1.062s] Computing alignments... [32.89s] Deallocating buffers... [0.022s] Loading trace points... [0.088s] Sorting trace points... [1.27s] Computing alignments... [34.063s] Deallocating buffers... [0.035s] Loading trace points... [0.115s] Sorting trace points... [1.335s] Computing alignments... [33.561s] Deallocating buffers... [0.019s] Loading trace points... [0.126s] Sorting trace points... [1.277s] Computing alignments... [33.168s] Deallocating buffers... [0.02s] Loading trace points... [0.061s] Sorting trace points... [1.314s] Computing alignments... [32.732s] Deallocating buffers... [0.014s] Loading trace points... [0.11s] Sorting trace points... [1.286s] Computing alignments... [33.311s] Deallocating buffers... [0.014s] Loading trace points... [0.078s] Sorting trace points... [1.232s] Computing alignments... [33.536s] Deallocating buffers... [0.017s] Loading trace points... [0.001s] Sorting trace points... [1.287s] Computing alignments... [33.431s] Deallocating buffers... [0.022s] Loading trace points... [0.087s] Sorting trace points... [1.335s] Computing alignments... [33.827s] Deallocating buffers... [0.015s] Loading trace points... [0.041s] Sorting trace points... [1.1s] Computing alignments... [33.632s] Deallocating buffers... [0.016s] Loading trace points... [0.045s] Sorting trace points... [1.268s] Computing alignments... [33.747s] Deallocating buffers... [0.018s] Loading trace points... [0.077s] Sorting trace points... [1.241s] Computing alignments... [34.073s] Deallocating buffers... [0.015s] Loading trace points... [0s] Sorting trace points... [0.931s] Computing alignments... [33.349s] Deallocating buffers... [0.016s] Loading trace points... [0s] [558.865s] Deallocating reference... [0.056s] Loading reference sequences... [29.421s] Masking reference... [30.943s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.008s] Building reference histograms... [33.679s] Allocating buffers... [0s] Processing query block 1, reference block 4/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.368s] Building query seed array... [2.078s] Computing hash join... [6.625s] Masking low complexity seeds... [0.509s] Searching alignments... [76.78s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 1/2, index chunk 2/4. Building reference seed array... [13.047s] Building query seed array... [2.942s] Computing hash join... [6.091s] Masking low complexity seeds... [0.28s] Searching alignments... [51.475s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 1/2, index chunk 3/4. Building reference seed array... [14.128s] Building query seed array... [2.787s] Computing hash join... [6.199s] Masking low complexity seeds... [0.311s] Searching alignments... [45.622s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.206s] Building query seed array... [2.372s] Computing hash join... [6.667s] Masking low complexity seeds... [0.328s] Searching alignments... [40.818s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.666s] Building query seed array... [2.04s] Computing hash join... [6.439s] Masking low complexity seeds... [0.399s] Searching alignments... [42.931s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.532s] Building query seed array... [2.367s] Computing hash join... [6.005s] Masking low complexity seeds... [0.264s] Searching alignments... [32.858s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 2/2, index chunk 3/4. Building reference seed array... [14.079s] Building query seed array... [2.657s] Computing hash join... [5.926s] Masking low complexity seeds... [0.251s] Searching alignments... [37.45s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.365s] Building query seed array... [2.126s] Computing hash join... [5.983s] Masking low complexity seeds... [0.254s] Searching alignments... [30.106s] Deallocating memory... [0s] Deallocating buffers... [1.847s] Clearing query masking... [1.576s] Opening temporary output file... [0.004s] Computing alignments... Loading trace points... [6.443s] Sorting trace points... [1.31s] Computing alignments... [31.662s] Deallocating buffers... [0.014s] Loading trace points... [0.061s] Sorting trace points... [1.228s] Computing alignments... [31.839s] Deallocating buffers... [0.023s] Loading trace points... [0.056s] Sorting trace points... [1.225s] Computing alignments... [31.669s] Deallocating buffers... [0.014s] Loading trace points... [0.05s] Sorting trace points... [1.263s] Computing alignments... [32.786s] Deallocating buffers... [0.018s] Loading trace points... [0.069s] Sorting trace points... [1.243s] Computing alignments... [33.527s] Deallocating buffers... [0.038s] Loading trace points... [0.07s] Sorting trace points... [1.297s] Computing alignments... [33.35s] Deallocating buffers... [0.018s] Loading trace points... [0.061s] Sorting trace points... [1.202s] Computing alignments... [32.698s] Deallocating buffers... [0.015s] Loading trace points... [0.057s] Sorting trace points... [1.222s] Computing alignments... [32.495s] Deallocating buffers... [0.017s] Loading trace points... [0.059s] Sorting trace points... [1.255s] Computing alignments... [32.976s] Deallocating buffers... [0.014s] Loading trace points... [0.081s] Sorting trace points... [1.286s] Computing alignments... [33.465s] Deallocating buffers... [0.015s] Loading trace points... [0.001s] Sorting trace points... [1.338s] Computing alignments... [33.327s] Deallocating buffers... [0.015s] Loading trace points... [0.077s] Sorting trace points... [1.257s] Computing alignments... [33.602s] Deallocating buffers... [0.02s] Loading trace points... [0.04s] Sorting trace points... [1.315s] Computing alignments... [33.513s] Deallocating buffers... [0.018s] Loading trace points... [0.038s] Sorting trace points... [1.405s] Computing alignments... [33.74s] Deallocating buffers... [0.128s] Loading trace points... [0.082s] Sorting trace points... [1.188s] Computing alignments... [33.759s] Deallocating buffers... [0.015s] Loading trace points... [0s] Sorting trace points... [1.284s] Computing alignments... [33.177s] Deallocating buffers... [0.015s] Loading trace points... [0s] [555.671s] Deallocating reference... [0.071s] Loading reference sequences... [29.239s] Masking reference... [32.154s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.008s] Building reference histograms... [33.389s] Allocating buffers... [0s] Processing query block 1, reference block 5/14, shape 1/2, index chunk 1/4. Building reference seed array... [9.981s] Building query seed array... [2.076s] Computing hash join... [7.038s] Masking low complexity seeds... [0.588s] Searching alignments... [77.466s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.776s] Building query seed array... [2.988s] Computing hash join... [7.442s] Masking low complexity seeds... [0.315s] Searching alignments... [52.104s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.772s] Building query seed array... [2.835s] Computing hash join... [6.869s] Masking low complexity seeds... [0.265s] Searching alignments... [44.005s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.518s] Building query seed array... [2.373s] Computing hash join... [7.394s] Masking low complexity seeds... [0.264s] Searching alignments... [38.889s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.644s] Building query seed array... [2.215s] Computing hash join... [6.528s] Masking low complexity seeds... [0.254s] Searching alignments... [43.739s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.595s] Building query seed array... [2.36s] Computing hash join... [6.349s] Masking low complexity seeds... [0.257s] Searching alignments... [32.039s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.663s] Building query seed array... [2.577s] Computing hash join... [6.527s] Masking low complexity seeds... [0.266s] Searching alignments... [36.355s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.448s] Building query seed array... [2.151s] Computing hash join... [6.482s] Masking low complexity seeds... [0.247s] Searching alignments... [30.118s] Deallocating memory... [0s] Deallocating buffers... [1.576s] Clearing query masking... [1.605s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [6.248s] Sorting trace points... [1.267s] Computing alignments... [31.627s] Deallocating buffers... [0.014s] Loading trace points... [0.044s] Sorting trace points... [1.034s] Computing alignments... [31.851s] Deallocating buffers... [0.055s] Loading trace points... [0.119s] Sorting trace points... [1.132s] Computing alignments... [31.629s] Deallocating buffers... [0.015s] Loading trace points... [0.091s] Sorting trace points... [1.304s] Computing alignments... [32.745s] Deallocating buffers... [0.024s] Loading trace points... [0.876s] Sorting trace points... [1.324s] Computing alignments... [33.524s] Deallocating buffers... [0.027s] Loading trace points... [0.099s] Sorting trace points... [1.31s] Computing alignments... [33.543s] Deallocating buffers... [0.017s] Loading trace points... [0.09s] Sorting trace points... [1.226s] Computing alignments... [32.869s] Deallocating buffers... [0.02s] Loading trace points... [0.071s] Sorting trace points... [1.042s] Computing alignments... [32.733s] Deallocating buffers... [0.015s] Loading trace points... [0.086s] Sorting trace points... [1.251s] Computing alignments... [32.86s] Deallocating buffers... [0.014s] Loading trace points... [0.09s] Sorting trace points... [1.306s] Computing alignments... [33.373s] Deallocating buffers... [0.014s] Loading trace points... [0.105s] Sorting trace points... [1.317s] Computing alignments... [33.446s] Deallocating buffers... [0.025s] Loading trace points... [0.105s] Sorting trace points... [1.288s] Computing alignments... [33.608s] Deallocating buffers... [0.014s] Loading trace points... [0.039s] Sorting trace points... [1.306s] Computing alignments... [33.422s] Deallocating buffers... [0.017s] Loading trace points... [0.081s] Sorting trace points... [0.973s] Computing alignments... [33.695s] Deallocating buffers... [0.016s] Loading trace points... [0.064s] Sorting trace points... [1.236s] Computing alignments... [33.592s] Deallocating buffers... [0.018s] Loading trace points... [0s] Sorting trace points... [0.92s] Computing alignments... [33.27s] Deallocating buffers... [0.017s] Loading trace points... [0s] [555.824s] Deallocating reference... [0.065s] Loading reference sequences... [31.492s] Masking reference... [30.895s] Initializing dictionary... [0.077s] Initializing temporary storage... [0.009s] Building reference histograms... [33.431s] Allocating buffers... [0s] Processing query block 1, reference block 6/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.233s] Building query seed array... [2.109s] Computing hash join... [6.799s] Masking low complexity seeds... [0.349s] Searching alignments... [74.43s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.47s] Building query seed array... [2.94s] Computing hash join... [6.544s] Masking low complexity seeds... [0.259s] Searching alignments... [51.304s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 1/2, index chunk 3/4. Building reference seed array... [14.085s] Building query seed array... [2.808s] Computing hash join... [7.418s] Masking low complexity seeds... [0.36s] Searching alignments... [43.491s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.041s] Building query seed array... [2.361s] Computing hash join... [6.761s] Masking low complexity seeds... [0.258s] Searching alignments... [38.711s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.453s] Building query seed array... [2.079s] Computing hash join... [6.373s] Masking low complexity seeds... [0.242s] Searching alignments... [42.05s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.917s] Building query seed array... [2.34s] Computing hash join... [6.484s] Masking low complexity seeds... [0.276s] Searching alignments... [32.294s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.523s] Building query seed array... [2.57s] Computing hash join... [6.32s] Masking low complexity seeds... [0.246s] Searching alignments... [36.981s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.46s] Building query seed array... [2.072s] Computing hash join... [6.442s] Masking low complexity seeds... [0.261s] Searching alignments... [30.926s] Deallocating memory... [0s] Deallocating buffers... [1.759s] Clearing query masking... [1.609s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [9.98s] Sorting trace points... [1.295s] Computing alignments... [31.283s] Deallocating buffers... [0.014s] Loading trace points... [0.048s] Sorting trace points... [1.304s] Computing alignments... [31.755s] Deallocating buffers... [0.243s] Loading trace points... [0.082s] Sorting trace points... [1.022s] Computing alignments... [31.405s] Deallocating buffers... [0.014s] Loading trace points... [0.049s] Sorting trace points... [1.24s] Computing alignments... [32.476s] Deallocating buffers... [0.017s] Loading trace points... [0.257s] Sorting trace points... [0.994s] Computing alignments... [32.86s] Deallocating buffers... [0.017s] Loading trace points... [0.172s] Sorting trace points... [1.079s] Computing alignments... [32.965s] Deallocating buffers... [0.017s] Loading trace points... [0.199s] Sorting trace points... [1.042s] Computing alignments... [32.225s] Deallocating buffers... [0.017s] Loading trace points... [0.267s] Sorting trace points... [1.222s] Computing alignments... [32.095s] Deallocating buffers... [0.014s] Loading trace points... [0.11s] Sorting trace points... [1.269s] Computing alignments... [32.493s] Deallocating buffers... [0.017s] Loading trace points... [0.071s] Sorting trace points... [1.255s] Computing alignments... [33.137s] Deallocating buffers... [0.017s] Loading trace points... [0.534s] Sorting trace points... [1.344s] Computing alignments... [33.025s] Deallocating buffers... [0.014s] Loading trace points... [0.41s] Sorting trace points... [1.301s] Computing alignments... [33.346s] Deallocating buffers... [0.018s] Loading trace points... [0.073s] Sorting trace points... [0.914s] Computing alignments... [33.228s] Deallocating buffers... [0.016s] Loading trace points... [0.001s] Sorting trace points... [1.06s] Computing alignments... [33.469s] Deallocating buffers... [0.015s] Loading trace points... [0.248s] Sorting trace points... [1.294s] Computing alignments... [33.444s] Deallocating buffers... [0.018s] Loading trace points... [0s] Sorting trace points... [1.077s] Computing alignments... [32.836s] Deallocating buffers... [0.016s] Loading trace points... [0s] [553.906s] Deallocating reference... [0.067s] Loading reference sequences... [51.95s] Masking reference... [30.909s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.008s] Building reference histograms... [33.408s] Allocating buffers... [0.001s] Processing query block 1, reference block 7/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.141s] Building query seed array... [2.115s] Computing hash join... [6.797s] Masking low complexity seeds... [0.292s] Searching alignments... [109.324s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 1/2, index chunk 2/4. Building reference seed array... [13.335s] Building query seed array... [2.884s] Computing hash join... [6.958s] Masking low complexity seeds... [0.266s] Searching alignments... [64.579s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.919s] Building query seed array... [2.816s] Computing hash join... [7.443s] Masking low complexity seeds... [0.273s] Searching alignments... [51.621s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.771s] Building query seed array... [2.215s] Computing hash join... [7.136s] Masking low complexity seeds... [0.283s] Searching alignments... [44.638s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.464s] Building query seed array... [2.245s] Computing hash join... [6.798s] Masking low complexity seeds... [0.259s] Searching alignments... [46.405s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.559s] Building query seed array... [2.386s] Computing hash join... [6.675s] Masking low complexity seeds... [0.273s] Searching alignments... [34.234s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.831s] Building query seed array... [2.636s] Computing hash join... [6.882s] Masking low complexity seeds... [0.273s] Searching alignments... [37.967s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.24s] Building query seed array... [2.048s] Computing hash join... [6.715s] Masking low complexity seeds... [0.264s] Searching alignments... [32.811s] Deallocating memory... [0s] Deallocating buffers... [1.829s] Clearing query masking... [1.624s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [8.865s] Sorting trace points... [1.226s] Computing alignments... [31.783s] Deallocating buffers... [0.014s] Loading trace points... [0.169s] Sorting trace points... [1.206s] Computing alignments... [32.105s] Deallocating buffers... [0.014s] Loading trace points... [0.167s] Sorting trace points... [1.236s] Computing alignments... [31.716s] Deallocating buffers... [0.014s] Loading trace points... [0.126s] Sorting trace points... [1.237s] Computing alignments... [32.911s] Deallocating buffers... [0.014s] Loading trace points... [0.377s] Sorting trace points... [1.335s] Computing alignments... [33.368s] Deallocating buffers... [0.098s] Loading trace points... [0.129s] Sorting trace points... [1.253s] Computing alignments... [33.56s] Deallocating buffers... [0.018s] Loading trace points... [0.316s] Sorting trace points... [1.236s] Computing alignments... [33.093s] Deallocating buffers... [0.022s] Loading trace points... [0.22s] Sorting trace points... [1.272s] Computing alignments... [32.704s] Deallocating buffers... [0.014s] Loading trace points... [0.073s] Sorting trace points... [0.89s] Computing alignments... [32.998s] Deallocating buffers... [0.016s] Loading trace points... [0.343s] Sorting trace points... [1.303s] Computing alignments... [33.559s] Deallocating buffers... [0.014s] Loading trace points... [0.065s] Sorting trace points... [1.248s] Computing alignments... [33.468s] Deallocating buffers... [0.014s] Loading trace points... [0.083s] Sorting trace points... [1.428s] Computing alignments... [33.737s] Deallocating buffers... [0.258s] Loading trace points... [0.077s] Sorting trace points... [1.308s] Computing alignments... [33.645s] Deallocating buffers... [0.024s] Loading trace points... [0.093s] Sorting trace points... [1.224s] Computing alignments... [33.793s] Deallocating buffers... [0.015s] Loading trace points... [0.087s] Sorting trace points... [1.165s] Computing alignments... [33.823s] Deallocating buffers... [0.017s] Loading trace points... [0s] Sorting trace points... [1.286s] Computing alignments... [33.215s] Deallocating buffers... [0.014s] Loading trace points... [0s] [561.5s] Deallocating reference... [0.067s] Loading reference sequences... [29.775s] Masking reference... [30.974s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.007s] Building reference histograms... [33.529s] Allocating buffers... [0s] Processing query block 1, reference block 8/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.417s] Building query seed array... [2.102s] Computing hash join... [6.642s] Masking low complexity seeds... [0.539s] Searching alignments... [80.453s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.456s] Building query seed array... [2.771s] Computing hash join... [6.474s] Masking low complexity seeds... [0.263s] Searching alignments... [53.866s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.933s] Building query seed array... [2.803s] Computing hash join... [6.435s] Masking low complexity seeds... [0.268s] Searching alignments... [45.026s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.885s] Building query seed array... [2.371s] Computing hash join... [6.12s] Masking low complexity seeds... [0.264s] Searching alignments... [40.422s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.308s] Building query seed array... [2.014s] Computing hash join... [6.198s] Masking low complexity seeds... [0.258s] Searching alignments... [44.114s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.677s] Building query seed array... [2.353s] Computing hash join... [6.268s] Masking low complexity seeds... [0.286s] Searching alignments... [33.417s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 2/2, index chunk 3/4. Building reference seed array... [14.315s] Building query seed array... [2.621s] Computing hash join... [6.022s] Masking low complexity seeds... [0.285s] Searching alignments... [35.95s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.777s] Building query seed array... [2.035s] Computing hash join... [6.165s] Masking low complexity seeds... [0.307s] Searching alignments... [31.694s] Deallocating memory... [0s] Deallocating buffers... [2.07s] Clearing query masking... [1.576s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [6.639s] Sorting trace points... [1.299s] Computing alignments... [31.639s] Deallocating buffers... [0.014s] Loading trace points... [0.074s] Sorting trace points... [1.277s] Computing alignments... [31.791s] Deallocating buffers... [0.155s] Loading trace points... [0.087s] Sorting trace points... [1.273s] Computing alignments... [31.741s] Deallocating buffers... [0.017s] Loading trace points... [1.064s] Sorting trace points... [1.284s] Computing alignments... [32.695s] Deallocating buffers... [0.021s] Loading trace points... [0.083s] Sorting trace points... [1.295s] Computing alignments... [33.347s] Deallocating buffers... [0.021s] Loading trace points... [0.107s] Sorting trace points... [1.2s] Computing alignments... [33.486s] Deallocating buffers... [0.015s] Loading trace points... [0.129s] Sorting trace points... [0.954s] Computing alignments... [32.874s] Deallocating buffers... [0.016s] Loading trace points... [0.069s] Sorting trace points... [1.23s] Computing alignments... [32.591s] Deallocating buffers... [0.017s] Loading trace points... [0.088s] Sorting trace points... [1.36s] Computing alignments... [33.034s] Deallocating buffers... [0.053s] Loading trace points... [0.068s] Sorting trace points... [1.064s] Computing alignments... [33.561s] Deallocating buffers... [0.015s] Loading trace points... [0.047s] Sorting trace points... [1.243s] Computing alignments... [33.516s] Deallocating buffers... [0.016s] Loading trace points... [0.078s] Sorting trace points... [1.29s] Computing alignments... [33.807s] Deallocating buffers... [0.02s] Loading trace points... [0.067s] Sorting trace points... [1.399s] Computing alignments... [33.858s] Deallocating buffers... [0.139s] Loading trace points... [0.061s] Sorting trace points... [1.259s] Computing alignments... [33.873s] Deallocating buffers... [0.015s] Loading trace points... [0.047s] Sorting trace points... [1.274s] Computing alignments... [33.948s] Deallocating buffers... [0.014s] Loading trace points... [0s] Sorting trace points... [1.221s] Computing alignments... [33.433s] Deallocating buffers... [0.015s] Loading trace points... [0s] [558.566s] Deallocating reference... [0.062s] Loading reference sequences... [29.428s] Masking reference... [30.89s] Initializing dictionary... [0.077s] Initializing temporary storage... [0.007s] Building reference histograms... [33.831s] Allocating buffers... [0s] Processing query block 1, reference block 9/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.335s] Building query seed array... [2.121s] Computing hash join... [7.105s] Masking low complexity seeds... [0.503s] Searching alignments... [78.292s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.864s] Building query seed array... [2.886s] Computing hash join... [7.262s] Masking low complexity seeds... [0.321s] Searching alignments... [53.192s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.997s] Building query seed array... [2.961s] Computing hash join... [7.001s] Masking low complexity seeds... [0.26s] Searching alignments... [45.7s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.343s] Building query seed array... [2.331s] Computing hash join... [7.239s] Masking low complexity seeds... [0.262s] Searching alignments... [40.196s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.391s] Building query seed array... [2.011s] Computing hash join... [6.531s] Masking low complexity seeds... [0.247s] Searching alignments... [43.296s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.809s] Building query seed array... [2.422s] Computing hash join... [6.436s] Masking low complexity seeds... [0.261s] Searching alignments... [32.929s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.559s] Building query seed array... [2.359s] Computing hash join... [6.569s] Masking low complexity seeds... [0.261s] Searching alignments... [36.932s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.251s] Building query seed array... [2.082s] Computing hash join... [6.593s] Masking low complexity seeds... [0.246s] Searching alignments... [29.965s] Deallocating memory... [0s] Deallocating buffers... [1.829s] Clearing query masking... [1.615s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [6.322s] Sorting trace points... [1.265s] Computing alignments... [31.798s] Deallocating buffers... [0.014s] Loading trace points... [0.124s] Sorting trace points... [1.206s] Computing alignments... [31.863s] Deallocating buffers... [0.02s] Loading trace points... [0.102s] Sorting trace points... [1.284s] Computing alignments... [31.707s] Deallocating buffers... [0.014s] Loading trace points... [0.071s] Sorting trace points... [1.27s] Computing alignments... [32.808s] Deallocating buffers... [0.017s] Loading trace points... [0.08s] Sorting trace points... [1.246s] Computing alignments... [33.614s] Deallocating buffers... [0.026s] Loading trace points... [0.108s] Sorting trace points... [1.144s] Computing alignments... [33.48s] Deallocating buffers... [0.017s] Loading trace points... [0.121s] Sorting trace points... [0.955s] Computing alignments... [33.058s] Deallocating buffers... [0.016s] Loading trace points... [0.059s] Sorting trace points... [1.153s] Computing alignments... [32.587s] Deallocating buffers... [0.014s] Loading trace points... [0.097s] Sorting trace points... [1.302s] Computing alignments... [32.894s] Deallocating buffers... [0.054s] Loading trace points... [0.064s] Sorting trace points... [0.921s] Computing alignments... [33.499s] Deallocating buffers... [0.016s] Loading trace points... [0.07s] Sorting trace points... [1.23s] Computing alignments... [33.355s] Deallocating buffers... [0.018s] Loading trace points... [0.101s] Sorting trace points... [1.269s] Computing alignments... [34.013s] Deallocating buffers... [0.015s] Loading trace points... [0.059s] Sorting trace points... [1.269s] Computing alignments... [33.653s] Deallocating buffers... [0.017s] Loading trace points... [0.062s] Sorting trace points... [1.297s] Computing alignments... [33.648s] Deallocating buffers... [0.015s] Loading trace points... [0.063s] Sorting trace points... [1.107s] Computing alignments... [33.78s] Deallocating buffers... [0.015s] Loading trace points... [0s] Sorting trace points... [1.068s] Computing alignments... [33.189s] Deallocating buffers... [0.015s] Loading trace points... [0s] [556.183s] Deallocating reference... [0.059s] Loading reference sequences... [29.352s] Masking reference... [30.92s] Initializing dictionary... [0.079s] Initializing temporary storage... [0.007s] Building reference histograms... [34.008s] Allocating buffers... [0s] Processing query block 1, reference block 10/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.245s] Building query seed array... [2.082s] Computing hash join... [6.686s] Masking low complexity seeds... [0.523s] Searching alignments... [77.414s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.817s] Building query seed array... [2.929s] Computing hash join... [6.483s] Masking low complexity seeds... [0.295s] Searching alignments... [53.996s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 1/2, index chunk 3/4. Building reference seed array... [14.562s] Building query seed array... [2.851s] Computing hash join... [6.376s] Masking low complexity seeds... [0.325s] Searching alignments... [43.471s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.534s] Building query seed array... [2.23s] Computing hash join... [6.759s] Masking low complexity seeds... [0.277s] Searching alignments... [39.15s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.733s] Building query seed array... [2.078s] Computing hash join... [6.82s] Masking low complexity seeds... [0.299s] Searching alignments... [43.646s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 2/2, index chunk 2/4. Building reference seed array... [13.369s] Building query seed array... [2.505s] Computing hash join... [6.318s] Masking low complexity seeds... [0.264s] Searching alignments... [32.952s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.577s] Building query seed array... [2.596s] Computing hash join... [6.412s] Masking low complexity seeds... [0.258s] Searching alignments... [38.079s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.441s] Building query seed array... [2.097s] Computing hash join... [6.376s] Masking low complexity seeds... [0.25s] Searching alignments... [30.258s] Deallocating memory... [0s] Deallocating buffers... [2.188s] Clearing query masking... [1.565s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [6.574s] Sorting trace points... [1.302s] Computing alignments... [31.647s] Deallocating buffers... [0.016s] Loading trace points... [0.078s] Sorting trace points... [1.215s] Computing alignments... [31.639s] Deallocating buffers... [0.02s] Loading trace points... [0.09s] Sorting trace points... [1.208s] Computing alignments... [31.633s] Deallocating buffers... [0.013s] Loading trace points... [0.077s] Sorting trace points... [1.097s] Computing alignments... [32.819s] Deallocating buffers... [0.018s] Loading trace points... [0.056s] Sorting trace points... [1.254s] Computing alignments... [33.329s] Deallocating buffers... [0.021s] Loading trace points... [0.076s] Sorting trace points... [1.266s] Computing alignments... [33.405s] Deallocating buffers... [0.014s] Loading trace points... [0.074s] Sorting trace points... [1.415s] Computing alignments... [32.806s] Deallocating buffers... [0.267s] Loading trace points... [0.065s] Sorting trace points... [1.3s] Computing alignments... [32.669s] Deallocating buffers... [0.014s] Loading trace points... [0.08s] Sorting trace points... [1.175s] Computing alignments... [32.949s] Deallocating buffers... [0.014s] Loading trace points... [0.068s] Sorting trace points... [1.297s] Computing alignments... [33.622s] Deallocating buffers... [0.014s] Loading trace points... [0.087s] Sorting trace points... [1.407s] Computing alignments... [33.638s] Deallocating buffers... [0.261s] Loading trace points... [0.086s] Sorting trace points... [1.383s] Computing alignments... [33.725s] Deallocating buffers... [0.024s] Loading trace points... [0.082s] Sorting trace points... [1.112s] Computing alignments... [33.691s] Deallocating buffers... [0.015s] Loading trace points... [0.053s] Sorting trace points... [1.3s] Computing alignments... [33.841s] Deallocating buffers... [0.014s] Loading trace points... [0.091s] Sorting trace points... [1.275s] Computing alignments... [33.742s] Deallocating buffers... [0.018s] Loading trace points... [0s] Sorting trace points... [1.27s] Computing alignments... [33.272s] Deallocating buffers... [0.015s] Loading trace points... [0s] [557.272s] Deallocating reference... [0.055s] Loading reference sequences... [29.47s] Masking reference... [32.193s] Initializing dictionary... [0.077s] Initializing temporary storage... [0.007s] Building reference histograms... [32.632s] Allocating buffers... [0s] Processing query block 1, reference block 11/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.103s] Building query seed array... [2.08s] Computing hash join... [7.198s] Masking low complexity seeds... [0.264s] Searching alignments... [74.573s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 1/2, index chunk 2/4. Building reference seed array... [13.595s] Building query seed array... [3.116s] Computing hash join... [6.992s] Masking low complexity seeds... [0.299s] Searching alignments... [54.217s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.849s] Building query seed array... [2.886s] Computing hash join... [6.839s] Masking low complexity seeds... [0.284s] Searching alignments... [45.191s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.201s] Building query seed array... [2.433s] Computing hash join... [7.331s] Masking low complexity seeds... [0.393s] Searching alignments... [39.666s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.377s] Building query seed array... [2.099s] Computing hash join... [6.631s] Masking low complexity seeds... [0.252s] Searching alignments... [42.357s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.944s] Building query seed array... [2.372s] Computing hash join... [6.752s] Masking low complexity seeds... [0.264s] Searching alignments... [32.37s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.651s] Building query seed array... [2.436s] Computing hash join... [6.565s] Masking low complexity seeds... [0.251s] Searching alignments... [37.011s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.343s] Building query seed array... [1.979s] Computing hash join... [6.886s] Masking low complexity seeds... [0.25s] Searching alignments... [31.361s] Deallocating memory... [0s] Deallocating buffers... [2.024s] Clearing query masking... [1.586s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [6.508s] Sorting trace points... [1.295s] Computing alignments... [31.666s] Deallocating buffers... [0.016s] Loading trace points... [0.04s] Sorting trace points... [1.242s] Computing alignments... [31.863s] Deallocating buffers... [0.024s] Loading trace points... [0.111s] Sorting trace points... [1.215s] Computing alignments... [31.692s] Deallocating buffers... [0.017s] Loading trace points... [0.092s] Sorting trace points... [1.261s] Computing alignments... [32.764s] Deallocating buffers... [0.022s] Loading trace points... [0.095s] Sorting trace points... [1.264s] Computing alignments... [33.89s] Deallocating buffers... [0.033s] Loading trace points... [0.12s] Sorting trace points... [0.953s] Computing alignments... [33.541s] Deallocating buffers... [0.016s] Loading trace points... [0.922s] Sorting trace points... [1.303s] Computing alignments... [33.186s] Deallocating buffers... [0.02s] Loading trace points... [0.001s] Sorting trace points... [1.244s] Computing alignments... [32.855s] Deallocating buffers... [0.017s] Loading trace points... [0.063s] Sorting trace points... [1.127s] Computing alignments... [33.27s] Deallocating buffers... [0.067s] Loading trace points... [0.056s] Sorting trace points... [1.287s] Computing alignments... [33.519s] Deallocating buffers... [0.014s] Loading trace points... [0.084s] Sorting trace points... [0.916s] Computing alignments... [33.297s] Deallocating buffers... [0.021s] Loading trace points... [0.071s] Sorting trace points... [0.985s] Computing alignments... [33.936s] Deallocating buffers... [0.035s] Loading trace points... [0.037s] Sorting trace points... [1.321s] Computing alignments... [33.57s] Deallocating buffers... [0.023s] Loading trace points... [0.055s] Sorting trace points... [1.33s] Computing alignments... [33.519s] Deallocating buffers... [0.018s] Loading trace points... [0.055s] Sorting trace points... [1.301s] Computing alignments... [33.837s] Deallocating buffers... [0.014s] Loading trace points... [0s] Sorting trace points... [1.039s] Computing alignments... [33.17s] Deallocating buffers... [0.02s] Loading trace points... [0s] [557.655s] Deallocating reference... [0.063s] Loading reference sequences... [29.302s] Masking reference... [32.102s] Initializing dictionary... [0.079s] Initializing temporary storage... [0.007s] Building reference histograms... [33.209s] Allocating buffers... [0s] Processing query block 1, reference block 12/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.612s] Building query seed array... [2.094s] Computing hash join... [7.608s] Masking low complexity seeds... [0.532s] Searching alignments... [78.192s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.697s] Building query seed array... [3s] Computing hash join... [6.769s] Masking low complexity seeds... [0.302s] Searching alignments... [52.133s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.79s] Building query seed array... [2.917s] Computing hash join... [6.66s] Masking low complexity seeds... [0.284s] Searching alignments... [46.054s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.669s] Building query seed array... [2.295s] Computing hash join... [7.081s] Masking low complexity seeds... [0.293s] Searching alignments... [41.724s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.502s] Building query seed array... [2.077s] Computing hash join... [7.35s] Masking low complexity seeds... [0.368s] Searching alignments... [43.49s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.712s] Building query seed array... [2.383s] Computing hash join... [6.52s] Masking low complexity seeds... [0.26s] Searching alignments... [32.827s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 2/2, index chunk 3/4. Building reference seed array... [14.059s] Building query seed array... [2.585s] Computing hash join... [6.526s] Masking low complexity seeds... [0.246s] Searching alignments... [36.141s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.302s] Building query seed array... [2.142s] Computing hash join... [6.393s] Masking low complexity seeds... [0.246s] Searching alignments... [31.948s] Deallocating memory... [0s] Deallocating buffers... [1.975s] Clearing query masking... [1.626s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [6.336s] Sorting trace points... [1.307s] Computing alignments... [31.552s] Deallocating buffers... [0.016s] Loading trace points... [1.06s] Sorting trace points... [1.351s] Computing alignments... [31.635s] Deallocating buffers... [0.113s] Loading trace points... [0.167s] Sorting trace points... [1.324s] Computing alignments... [31.547s] Deallocating buffers... [0.014s] Loading trace points... [0.101s] Sorting trace points... [1.291s] Computing alignments... [32.484s] Deallocating buffers... [0.02s] Loading trace points... [0.09s] Sorting trace points... [1.145s] Computing alignments... [33.1s] Deallocating buffers... [0.02s] Loading trace points... [0.091s] Sorting trace points... [1.319s] Computing alignments... [32.994s] Deallocating buffers... [0.093s] Loading trace points... [0.081s] Sorting trace points... [0.934s] Computing alignments... [32.662s] Deallocating buffers... [0.02s] Loading trace points... [0.06s] Sorting trace points... [1.252s] Computing alignments... [32.326s] Deallocating buffers... [0.022s] Loading trace points... [0.058s] Sorting trace points... [1.364s] Computing alignments... [32.89s] Deallocating buffers... [0.206s] Loading trace points... [0.07s] Sorting trace points... [1.332s] Computing alignments... [33.458s] Deallocating buffers... [0.014s] Loading trace points... [0.001s] Sorting trace points... [1.281s] Computing alignments... [33.335s] Deallocating buffers... [0.02s] Loading trace points... [0.085s] Sorting trace points... [1.343s] Computing alignments... [33.601s] Deallocating buffers... [0.024s] Loading trace points... [0.043s] Sorting trace points... [1.489s] Computing alignments... [33.743s] Deallocating buffers... [0.295s] Loading trace points... [0.051s] Sorting trace points... [1.306s] Computing alignments... [33.715s] Deallocating buffers... [0.014s] Loading trace points... [0.079s] Sorting trace points... [1.347s] Computing alignments... [33.756s] Deallocating buffers... [0.014s] Loading trace points... [0s] Sorting trace points... [1.286s] Computing alignments... [33.242s] Deallocating buffers... [0.018s] Loading trace points... [0s] [556.3s] Deallocating reference... [0.071s] Loading reference sequences... [29.65s] Masking reference... [30.892s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.007s] Building reference histograms... [33.657s] Allocating buffers... [0s] Processing query block 1, reference block 13/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.808s] Building query seed array... [2.139s] Computing hash join... [7.138s] Masking low complexity seeds... [0.441s] Searching alignments... [78.166s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 1/2, index chunk 2/4. Building reference seed array... [13.144s] Building query seed array... [2.952s] Computing hash join... [7.27s] Masking low complexity seeds... [0.297s] Searching alignments... [52.299s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 1/2, index chunk 3/4. Building reference seed array... [14.524s] Building query seed array... [2.873s] Computing hash join... [6.921s] Masking low complexity seeds... [0.311s] Searching alignments... [44.425s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.174s] Building query seed array... [2.34s] Computing hash join... [7.521s] Masking low complexity seeds... [0.34s] Searching alignments... [44.102s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.795s] Building query seed array... [2.121s] Computing hash join... [7.332s] Masking low complexity seeds... [0.34s] Searching alignments... [45.823s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 2/2, index chunk 2/4. Building reference seed array... [13.458s] Building query seed array... [2.476s] Computing hash join... [6.727s] Masking low complexity seeds... [0.278s] Searching alignments... [33.982s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.34s] Building query seed array... [2.467s] Computing hash join... [6.685s] Masking low complexity seeds... [0.27s] Searching alignments... [38.736s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 2/2, index chunk 4/4. Building reference seed array... [11.049s] Building query seed array... [2.137s] Computing hash join... [6.472s] Masking low complexity seeds... [0.271s] Searching alignments... [31.68s] Deallocating memory... [0s] Deallocating buffers... [2.222s] Clearing query masking... [1.592s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [8.447s] Sorting trace points... [1.122s] Computing alignments... [31.666s] Deallocating buffers... [0.017s] Loading trace points... [0.182s] Sorting trace points... [1.127s] Computing alignments... [31.795s] Deallocating buffers... [0.021s] Loading trace points... [0.105s] Sorting trace points... [1.233s] Computing alignments... [31.54s] Deallocating buffers... [0.041s] Loading trace points... [0.12s] Sorting trace points... [1.269s] Computing alignments... [32.716s] Deallocating buffers... [0.021s] Loading trace points... [0.211s] Sorting trace points... [1.261s] Computing alignments... [33.601s] Deallocating buffers... [0.02s] Loading trace points... [0.127s] Sorting trace points... [0.957s] Computing alignments... [33.269s] Deallocating buffers... [0.016s] Loading trace points... [0.09s] Sorting trace points... [1.142s] Computing alignments... [32.878s] Deallocating buffers... [0.022s] Loading trace points... [0.088s] Sorting trace points... [1.245s] Computing alignments... [32.529s] Deallocating buffers... [0.014s] Loading trace points... [0.182s] Sorting trace points... [1.284s] Computing alignments... [33.043s] Deallocating buffers... [0.014s] Loading trace points... [0.088s] Sorting trace points... [1.101s] Computing alignments... [33.359s] Deallocating buffers... [0.017s] Loading trace points... [0.101s] Sorting trace points... [1.305s] Computing alignments... [33.259s] Deallocating buffers... [0.017s] Loading trace points... [0.094s] Sorting trace points... [1.281s] Computing alignments... [33.564s] Deallocating buffers... [0.023s] Loading trace points... [0.097s] Sorting trace points... [1.563s] Computing alignments... [33.552s] Deallocating buffers... [0.32s] Loading trace points... [0.079s] Sorting trace points... [1.276s] Computing alignments... [33.649s] Deallocating buffers... [0.015s] Loading trace points... [0.107s] Sorting trace points... [1.286s] Computing alignments... [33.88s] Deallocating buffers... [0.184s] Loading trace points... [0s] Sorting trace points... [0.909s] Computing alignments... [33.121s] Deallocating buffers... [0.016s] Loading trace points... [0s] [557.891s] Deallocating reference... [0.06s] Loading reference sequences... [35.806s] Masking reference... [25.46s] Initializing dictionary... [0.062s] Initializing temporary storage... [0.007s] Building reference histograms... [26.413s] Allocating buffers... [0s] Processing query block 1, reference block 14/14, shape 1/2, index chunk 1/4. Building reference seed array... [8.808s] Building query seed array... [2.091s] Computing hash join... [5.261s] Masking low complexity seeds... [0.255s] Searching alignments... [85.242s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 1/2, index chunk 2/4. Building reference seed array... [9.969s] Building query seed array... [2.8s] Computing hash join... [5.364s] Masking low complexity seeds... [0.248s] Searching alignments... [46.462s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 1/2, index chunk 3/4. Building reference seed array... [11.06s] Building query seed array... [2.712s] Computing hash join... [5.384s] Masking low complexity seeds... [0.249s] Searching alignments... [38.415s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 1/2, index chunk 4/4. Building reference seed array... [8.451s] Building query seed array... [2.373s] Computing hash join... [5.398s] Masking low complexity seeds... [0.27s] Searching alignments... [34.104s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 2/2, index chunk 1/4. Building reference seed array... [7.992s] Building query seed array... [1.902s] Computing hash join... [5.13s] Masking low complexity seeds... [0.235s] Searching alignments... [36.501s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 2/2, index chunk 2/4. Building reference seed array... [10.13s] Building query seed array... [2.33s] Computing hash join... [5.526s] Masking low complexity seeds... [0.256s] Searching alignments... [27.869s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 2/2, index chunk 3/4. Building reference seed array... [11.046s] Building query seed array... [2.521s] Computing hash join... [5.422s] Masking low complexity seeds... [0.292s] Searching alignments... [31.302s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 2/2, index chunk 4/4. Building reference seed array... [8.393s] Building query seed array... [2.007s] Computing hash join... [5.474s] Masking low complexity seeds... [0.313s] Searching alignments... [24.703s] Deallocating memory... [0s] Deallocating buffers... [0.684s] Clearing query masking... [1.632s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [13.784s] Sorting trace points... [1.877s] Computing alignments... [50.409s] Deallocating buffers... [0.026s] Loading trace points... [0.263s] Sorting trace points... [1.715s] Computing alignments... [51.297s] Deallocating buffers... [0.026s] Loading trace points... [0.23s] Sorting trace points... [1.844s] Computing alignments... [53.027s] Deallocating buffers... [0.027s] Loading trace points... [0.316s] Sorting trace points... [2.008s] Computing alignments... [51.829s] Deallocating buffers... [0.023s] Loading trace points... [0.17s] Sorting trace points... [1.682s] Computing alignments... [52.746s] Deallocating buffers... [0.025s] Loading trace points... [0.193s] Sorting trace points... [2.199s] Computing alignments... [53.283s] Deallocating buffers... [0.023s] Loading trace points... [0.233s] Sorting trace points... [2.377s] Computing alignments... [53.386s] Deallocating buffers... [0.219s] Loading trace points... [0s] Sorting trace points... [2.105s] Computing alignments... [53.016s] Deallocating buffers... [0.028s] Loading trace points... [0s] [450.685s] Deallocating reference... [0.051s] Loading reference sequences... [0.129s] Deallocating buffers... [0s] Joining output blocks... Joining output blocks... [2230.53s] [2230.53s] Deallocating queries... [0.084s] Loading query sequences... [0s] Closing the input file... [0s] Closing the output file... Loading dictionary... [3.78s] [4.86s] Closing the database... [0s] Cleaning up... [0s] Total time = 18943.9s Reported 2392185082 pairwise alignments, 2392185082 HSPs. 13376766 queries aligned. DIAMOND BLASTx on /gscratch/srlab/sam/data/P_verrucosa/RNAseq/C20_R2.fastp-trim.20230215.fq.gz complete: C20_R2.blastx.meganized.daa Now MEGANizing C20_R2.blastx.meganized.daa Version MEGAN Community Edition (version 6.22.0, built 19 Feb 2022) Author(s) Daniel H. Huson Copyright (C) 2022 Daniel H. Huson. This program comes with ABSOLUTELY NO WARRANTY. Java version: 17.0.2 Functional classifications to use: EC, EGGNOG, GTDB, INTERPRO2GO, SEED Loading ncbi.map: 2,396,736 Loading ncbi.tre: 2,396,740 Loading ec.map: 8,200 Loading ec.tre: 8,204 Loading eggnog.map: 30,875 Loading eggnog.tre: 30,986 Loading gtdb.map: 240,103 Loading gtdb.tre: 240,107 Loading interpro2go.map: 14,242 Loading interpro2go.tre: 28,907 Loading seed.map: 961 Loading seed.tre: 962 Meganizing: C20_R2.blastx.meganized.daa Meganizing init Annotating DAA file using FAST mode (accession database and first accession per line) Annotating references 10% 20% 30% 40% 50% 60% 70% 100% (525.5s) Writing 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (1.4s) Binning reads Initializing... Initializing binning... Using 'Naive LCA' algorithm for binning: Taxonomy Using Best-Hit algorithm for binning: SEED Using Best-Hit algorithm for binning: EGGNOG Using 'Naive LCA' algorithm for binning: GTDB Using Best-Hit algorithm for binning: EC Using Best-Hit algorithm for binning: INTERPRO2GO Binning reads... Binning reads Analyzing alignments 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (4,498.2s) Total reads: 13,376,766 With hits: 13,376,766 Alignments: 2,377,750,554 Assig. Taxonomy: 12,260,964 Assig. SEED: 102,988 Assig. EGGNOG: 45,186 Assig. GTDB: 364,465 Assig. EC: 2,118,036 Assig. INTERPRO2GO: 1,165,881 MinSupport set to: 6688 Binning reads Applying min-support & disabled filter to Taxonomy... 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (0.5s) Min-supp. changes: 4,111 Binning reads Applying min-support & disabled filter to GTDB... 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (11.2s) Min-supp. changes: 3,114 Binning reads Writing classification tables 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (31.4s) Binning reads Syncing 100% (0.5s) Class. Taxonomy: 74 Class. SEED: 491 Class. EGGNOG: 1,732 Class. GTDB: 15 Class. EC: 2,322 Class. INTERPRO2GO: 8,079 Total time: 5,077s Peak memory: 36 of 195.3G MEGANization of C20_R2.blastx.meganized.daa completed. Generating MD5 checksum for /gscratch/srlab/sam/data/P_verrucosa/RNAseq/C21_R1.fastp-trim.20230215.fq.gz... 2de10819d2775f678b492a8bee6a3d94 /gscratch/srlab/sam/data/P_verrucosa/RNAseq/C21_R1.fastp-trim.20230215.fq.gz Running DIAMOND BLASTx on /gscratch/srlab/sam/data/P_verrucosa/RNAseq/C21_R1.fastp-trim.20230215.fq.gz. diamond v2.1.1.155 (C) Max Planck Society for the Advancement of Science Documentation, support and updates available at http://www.diamondsearch.org Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021) #CPU threads: 40 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) Temporary directory: Percentage range of top alignment score to report hits: 5 Opening the database... [0.406s] Database: /gscratch/srlab/blastdbs/20230215-ncbi-nr/20230215-ncbi-nr.dmnd (type: Diamond database, sequences: 526308523, letters: 207134680681) Block size = 15000000000 Opening the input file... [0.696s] Opening the output file... [0s] Loading query sequences... [51.999s] Masking queries... [12.865s] Algorithm: Double-indexed Building query histograms... [13.238s] Loading reference sequences... [29.068s] Masking reference... [32.263s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.008s] Building reference histograms... [32.405s] Allocating buffers... [0.001s] Processing query block 1, reference block 1/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.402s] Building query seed array... [1.459s] Computing hash join... [5.844s] Masking low complexity seeds... [0.21s] Searching alignments... [52.825s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.693s] Building query seed array... [2.176s] Computing hash join... [5.507s] Masking low complexity seeds... [0.21s] Searching alignments... [34.268s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.317s] Building query seed array... [1.92s] Computing hash join... [5.738s] Masking low complexity seeds... [0.213s] Searching alignments... [30.417s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.471s] Building query seed array... [1.67s] Computing hash join... [5.68s] Masking low complexity seeds... [0.223s] Searching alignments... [26.779s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.271s] Building query seed array... [1.464s] Computing hash join... [5.801s] Masking low complexity seeds... [0.195s] Searching alignments... [25.996s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.062s] Building query seed array... [1.68s] Computing hash join... [5.614s] Masking low complexity seeds... [0.206s] Searching alignments... [21.556s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.375s] Building query seed array... [1.731s] Computing hash join... [5.594s] Masking low complexity seeds... [0.195s] Searching alignments... [23.852s] Deallocating memory... [0s] Processing query block 1, reference block 1/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.549s] Building query seed array... [1.469s] Computing hash join... [5.484s] Masking low complexity seeds... [0.191s] Searching alignments... [20.232s] Deallocating memory... [0s] Deallocating buffers... [1.056s] Clearing query masking... [1.075s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [9.525s] Sorting trace points... [1.811s] Computing alignments... [43.363s] Deallocating buffers... [0.02s] Loading trace points... [0.1s] Sorting trace points... [1.815s] Computing alignments... [43.511s] Deallocating buffers... [0.114s] Loading trace points... [0.138s] Sorting trace points... [1.645s] Computing alignments... [42.66s] Deallocating buffers... [0.022s] Loading trace points... [0.157s] Sorting trace points... [1.307s] Computing alignments... [42.902s] Deallocating buffers... [0.021s] Loading trace points... [0.142s] Sorting trace points... [1.736s] Computing alignments... [44.776s] Deallocating buffers... [0.024s] Loading trace points... [0.056s] Sorting trace points... [1.692s] Computing alignments... [44.965s] Deallocating buffers... [0.065s] Loading trace points... [0.12s] Sorting trace points... [1.337s] Computing alignments... [45.04s] Deallocating buffers... [0.025s] Loading trace points... [0s] Sorting trace points... [1.69s] Computing alignments... [44.816s] Deallocating buffers... [0.019s] Loading trace points... [0s] [375.692s] Deallocating reference... [0.057s] Loading reference sequences... [33.99s] Masking reference... [31.175s] Initializing dictionary... [0.077s] Initializing temporary storage... [0.008s] Building reference histograms... [32.454s] Allocating buffers... [0s] Processing query block 1, reference block 2/14, shape 1/2, index chunk 1/4. Building reference seed array... [9.923s] Building query seed array... [1.475s] Computing hash join... [6.315s] Masking low complexity seeds... [0.205s] Searching alignments... [50.527s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.566s] Building query seed array... [2.116s] Computing hash join... [6.175s] Masking low complexity seeds... [0.204s] Searching alignments... [33.437s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.288s] Building query seed array... [1.859s] Computing hash join... [6.278s] Masking low complexity seeds... [0.205s] Searching alignments... [29.212s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 1/2, index chunk 4/4. Building reference seed array... [9.988s] Building query seed array... [1.629s] Computing hash join... [6.181s] Masking low complexity seeds... [0.196s] Searching alignments... [28.309s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.179s] Building query seed array... [1.559s] Computing hash join... [6.508s] Masking low complexity seeds... [0.271s] Searching alignments... [26.007s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.1s] Building query seed array... [1.658s] Computing hash join... [6.241s] Masking low complexity seeds... [0.203s] Searching alignments... [21.875s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.433s] Building query seed array... [1.84s] Computing hash join... [6.227s] Masking low complexity seeds... [0.193s] Searching alignments... [23.368s] Deallocating memory... [0s] Processing query block 1, reference block 2/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.364s] Building query seed array... [1.49s] Computing hash join... [6.241s] Masking low complexity seeds... [0.189s] Searching alignments... [20.644s] Deallocating memory... [0s] Deallocating buffers... [0.718s] Clearing query masking... [1.108s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [9.481s] Sorting trace points... [1.814s] Computing alignments... [42.893s] Deallocating buffers... [0.018s] Loading trace points... [0.114s] Sorting trace points... [1.766s] Computing alignments... [43.158s] Deallocating buffers... [0.064s] Loading trace points... [0.127s] Sorting trace points... [1.384s] Computing alignments... [42.337s] Deallocating buffers... [0.019s] Loading trace points... [0.111s] Sorting trace points... [1.551s] Computing alignments... [42.522s] Deallocating buffers... [0.022s] Loading trace points... [0.162s] Sorting trace points... [1.762s] Computing alignments... [44.522s] Deallocating buffers... [0.023s] Loading trace points... [0.199s] Sorting trace points... [1.772s] Computing alignments... [44.8s] Deallocating buffers... [0.019s] Loading trace points... [0.078s] Sorting trace points... [1.372s] Computing alignments... [44.866s] Deallocating buffers... [0.021s] Loading trace points... [0s] Sorting trace points... [1.746s] Computing alignments... [44.625s] Deallocating buffers... [0.02s] Loading trace points... [0s] [373.584s] Deallocating reference... [0.057s] Loading reference sequences... [29.544s] Masking reference... [32.465s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.007s] Building reference histograms... [32.356s] Allocating buffers... [0s] Processing query block 1, reference block 3/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.174s] Building query seed array... [1.482s] Computing hash join... [5.541s] Masking low complexity seeds... [0.202s] Searching alignments... [50.531s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 1/2, index chunk 2/4. Building reference seed array... [13.055s] Building query seed array... [2.161s] Computing hash join... [5.46s] Masking low complexity seeds... [0.212s] Searching alignments... [35s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.976s] Building query seed array... [1.964s] Computing hash join... [5.609s] Masking low complexity seeds... [0.213s] Searching alignments... [29.42s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.289s] Building query seed array... [1.691s] Computing hash join... [5.438s] Masking low complexity seeds... [0.196s] Searching alignments... [26.238s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.419s] Building query seed array... [1.376s] Computing hash join... [5.651s] Masking low complexity seeds... [0.259s] Searching alignments... [26.137s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.724s] Building query seed array... [1.707s] Computing hash join... [5.311s] Masking low complexity seeds... [0.198s] Searching alignments... [22.751s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.717s] Building query seed array... [1.843s] Computing hash join... [5.305s] Masking low complexity seeds... [0.191s] Searching alignments... [23.455s] Deallocating memory... [0s] Processing query block 1, reference block 3/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.22s] Building query seed array... [1.431s] Computing hash join... [5.413s] Masking low complexity seeds... [0.196s] Searching alignments... [20.8s] Deallocating memory... [0s] Deallocating buffers... [1.544s] Clearing query masking... [1.066s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [10.148s] Sorting trace points... [1.716s] Computing alignments... [42.987s] Deallocating buffers... [0.021s] Loading trace points... [0.14s] Sorting trace points... [1.717s] Computing alignments... [43.236s] Deallocating buffers... [0.018s] Loading trace points... [0.144s] Sorting trace points... [1.599s] Computing alignments... [42.618s] Deallocating buffers... [0.018s] Loading trace points... [0.156s] Sorting trace points... [1.392s] Computing alignments... [42.641s] Deallocating buffers... [0.019s] Loading trace points... [0.135s] Sorting trace points... [1.435s] Computing alignments... [44.535s] Deallocating buffers... [0.022s] Loading trace points... [0.079s] Sorting trace points... [1.423s] Computing alignments... [44.913s] Deallocating buffers... [0.02s] Loading trace points... [0.146s] Sorting trace points... [1.782s] Computing alignments... [45.026s] Deallocating buffers... [0.024s] Loading trace points... [0s] Sorting trace points... [1.712s] Computing alignments... [44.888s] Deallocating buffers... [0.019s] Loading trace points... [0s] [374.892s] Deallocating reference... [0.055s] Loading reference sequences... [29.208s] Masking reference... [30.952s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.007s] Building reference histograms... [33.297s] Allocating buffers... [0.001s] Processing query block 1, reference block 4/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.397s] Building query seed array... [1.531s] Computing hash join... [5.665s] Masking low complexity seeds... [0.209s] Searching alignments... [51.524s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 1/2, index chunk 2/4. Building reference seed array... [13.462s] Building query seed array... [2.166s] Computing hash join... [5.649s] Masking low complexity seeds... [0.212s] Searching alignments... [34.406s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.96s] Building query seed array... [1.959s] Computing hash join... [5.615s] Masking low complexity seeds... [0.2s] Searching alignments... [31.044s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.532s] Building query seed array... [1.707s] Computing hash join... [5.727s] Masking low complexity seeds... [0.2s] Searching alignments... [25.841s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.31s] Building query seed array... [1.42s] Computing hash join... [5.875s] Masking low complexity seeds... [0.256s] Searching alignments... [26.053s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 2/2, index chunk 2/4. Building reference seed array... [13.055s] Building query seed array... [1.821s] Computing hash join... [5.699s] Masking low complexity seeds... [0.203s] Searching alignments... [21.625s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.483s] Building query seed array... [1.799s] Computing hash join... [5.629s] Masking low complexity seeds... [0.186s] Searching alignments... [24.355s] Deallocating memory... [0s] Processing query block 1, reference block 4/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.075s] Building query seed array... [1.52s] Computing hash join... [5.918s] Masking low complexity seeds... [0.207s] Searching alignments... [20.354s] Deallocating memory... [0s] Deallocating buffers... [1.243s] Clearing query masking... [1.042s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [10.071s] Sorting trace points... [1.835s] Computing alignments... [43.368s] Deallocating buffers... [0.019s] Loading trace points... [0.122s] Sorting trace points... [1.824s] Computing alignments... [43.605s] Deallocating buffers... [0.176s] Loading trace points... [0.133s] Sorting trace points... [1.678s] Computing alignments... [42.785s] Deallocating buffers... [0.018s] Loading trace points... [0.125s] Sorting trace points... [1.715s] Computing alignments... [42.906s] Deallocating buffers... [0.019s] Loading trace points... [0.145s] Sorting trace points... [1.643s] Computing alignments... [44.78s] Deallocating buffers... [0.022s] Loading trace points... [0.085s] Sorting trace points... [1.703s] Computing alignments... [44.963s] Deallocating buffers... [0.019s] Loading trace points... [0.133s] Sorting trace points... [1.836s] Computing alignments... [45.185s] Deallocating buffers... [0.06s] Loading trace points... [0s] Sorting trace points... [1.714s] Computing alignments... [44.865s] Deallocating buffers... [0.024s] Loading trace points... [0s] [377.834s] Deallocating reference... [0.057s] Loading reference sequences... [29.631s] Masking reference... [31.013s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.007s] Building reference histograms... [32.524s] Allocating buffers... [0s] Processing query block 1, reference block 5/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.307s] Building query seed array... [1.474s] Computing hash join... [6.157s] Masking low complexity seeds... [0.201s] Searching alignments... [49.951s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 1/2, index chunk 2/4. Building reference seed array... [13.287s] Building query seed array... [2.087s] Computing hash join... [5.619s] Masking low complexity seeds... [0.255s] Searching alignments... [33.03s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 1/2, index chunk 3/4. Building reference seed array... [14.487s] Building query seed array... [2.039s] Computing hash join... [5.558s] Masking low complexity seeds... [0.231s] Searching alignments... [29.519s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.47s] Building query seed array... [1.62s] Computing hash join... [5.544s] Masking low complexity seeds... [0.199s] Searching alignments... [26.26s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.372s] Building query seed array... [1.522s] Computing hash join... [5.714s] Masking low complexity seeds... [0.247s] Searching alignments... [26.259s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.459s] Building query seed array... [1.635s] Computing hash join... [5.541s] Masking low complexity seeds... [0.231s] Searching alignments... [21.681s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.958s] Building query seed array... [1.822s] Computing hash join... [5.135s] Masking low complexity seeds... [0.183s] Searching alignments... [23.656s] Deallocating memory... [0s] Processing query block 1, reference block 5/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.279s] Building query seed array... [1.456s] Computing hash join... [5.093s] Masking low complexity seeds... [0.235s] Searching alignments... [21.357s] Deallocating memory... [0s] Deallocating buffers... [1.789s] Clearing query masking... [1.063s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [9.344s] Sorting trace points... [1.771s] Computing alignments... [42.742s] Deallocating buffers... [0.019s] Loading trace points... [0.153s] Sorting trace points... [1.551s] Computing alignments... [43.141s] Deallocating buffers... [0.019s] Loading trace points... [0.101s] Sorting trace points... [1.358s] Computing alignments... [42.417s] Deallocating buffers... [0.019s] Loading trace points... [0.123s] Sorting trace points... [1.552s] Computing alignments... [42.467s] Deallocating buffers... [0.022s] Loading trace points... [0.152s] Sorting trace points... [1.605s] Computing alignments... [44.372s] Deallocating buffers... [0.019s] Loading trace points... [0.145s] Sorting trace points... [1.821s] Computing alignments... [44.683s] Deallocating buffers... [0.024s] Loading trace points... [0.248s] Sorting trace points... [1.425s] Computing alignments... [44.878s] Deallocating buffers... [0.021s] Loading trace points... [0s] Sorting trace points... [1.347s] Computing alignments... [44.498s] Deallocating buffers... [0.021s] Loading trace points... [0s] [372.198s] Deallocating reference... [0.057s] Loading reference sequences... [29.177s] Masking reference... [30.86s] Initializing dictionary... [0.077s] Initializing temporary storage... [0.007s] Building reference histograms... [32.494s] Allocating buffers... [0s] Processing query block 1, reference block 6/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.118s] Building query seed array... [1.481s] Computing hash join... [6.326s] Masking low complexity seeds... [0.209s] Searching alignments... [47.929s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.297s] Building query seed array... [1.958s] Computing hash join... [6.256s] Masking low complexity seeds... [0.206s] Searching alignments... [32.705s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.987s] Building query seed array... [1.962s] Computing hash join... [6.38s] Masking low complexity seeds... [0.215s] Searching alignments... [28.765s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.112s] Building query seed array... [1.693s] Computing hash join... [6.332s] Masking low complexity seeds... [0.196s] Searching alignments... [25.772s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.587s] Building query seed array... [1.443s] Computing hash join... [6.349s] Masking low complexity seeds... [0.241s] Searching alignments... [25.653s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.362s] Building query seed array... [1.624s] Computing hash join... [6.227s] Masking low complexity seeds... [0.201s] Searching alignments... [22.127s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.51s] Building query seed array... [1.711s] Computing hash join... [6.453s] Masking low complexity seeds... [0.194s] Searching alignments... [23.528s] Deallocating memory... [0s] Processing query block 1, reference block 6/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.123s] Building query seed array... [1.55s] Computing hash join... [6.557s] Masking low complexity seeds... [0.209s] Searching alignments... [20.035s] Deallocating memory... [0s] Deallocating buffers... [1.127s] Clearing query masking... [1.106s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [9.279s] Sorting trace points... [1.785s] Computing alignments... [42.85s] Deallocating buffers... [0.02s] Loading trace points... [0.077s] Sorting trace points... [1.643s] Computing alignments... [43.109s] Deallocating buffers... [0.018s] Loading trace points... [0.08s] Sorting trace points... [1.577s] Computing alignments... [42.276s] Deallocating buffers... [0.018s] Loading trace points... [0.188s] Sorting trace points... [1.642s] Computing alignments... [42.489s] Deallocating buffers... [0.022s] Loading trace points... [0.182s] Sorting trace points... [1.639s] Computing alignments... [44.425s] Deallocating buffers... [0.019s] Loading trace points... [0.208s] Sorting trace points... [1.739s] Computing alignments... [44.762s] Deallocating buffers... [0.019s] Loading trace points... [0.184s] Sorting trace points... [1.729s] Computing alignments... [44.815s] Deallocating buffers... [0.019s] Loading trace points... [0s] Sorting trace points... [1.604s] Computing alignments... [44.41s] Deallocating buffers... [0.02s] Loading trace points... [0s] [372.985s] Deallocating reference... [0.061s] Loading reference sequences... [29.558s] Masking reference... [32.172s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.007s] Building reference histograms... [32.141s] Allocating buffers... [0.001s] Processing query block 1, reference block 7/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.153s] Building query seed array... [1.496s] Computing hash join... [6.518s] Masking low complexity seeds... [0.202s] Searching alignments... [53.676s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.641s] Building query seed array... [2.136s] Computing hash join... [6.329s] Masking low complexity seeds... [0.203s] Searching alignments... [35.991s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 1/2, index chunk 3/4. Building reference seed array... [14.021s] Building query seed array... [2.026s] Computing hash join... [6.577s] Masking low complexity seeds... [0.208s] Searching alignments... [30.859s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.366s] Building query seed array... [1.718s] Computing hash join... [6.358s] Masking low complexity seeds... [0.219s] Searching alignments... [26.3s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.254s] Building query seed array... [1.46s] Computing hash join... [6.811s] Masking low complexity seeds... [0.199s] Searching alignments... [26.538s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.475s] Building query seed array... [1.769s] Computing hash join... [6.542s] Masking low complexity seeds... [0.205s] Searching alignments... [21.471s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.469s] Building query seed array... [1.763s] Computing hash join... [6.256s] Masking low complexity seeds... [0.197s] Searching alignments... [23.341s] Deallocating memory... [0s] Processing query block 1, reference block 7/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.321s] Building query seed array... [1.539s] Computing hash join... [6.512s] Masking low complexity seeds... [0.216s] Searching alignments... [20.32s] Deallocating memory... [0s] Deallocating buffers... [1.082s] Clearing query masking... [1.106s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [9.474s] Sorting trace points... [1.768s] Computing alignments... [43.073s] Deallocating buffers... [0.021s] Loading trace points... [0.142s] Sorting trace points... [1.35s] Computing alignments... [43.365s] Deallocating buffers... [0.021s] Loading trace points... [0.192s] Sorting trace points... [1.405s] Computing alignments... [42.597s] Deallocating buffers... [0.019s] Loading trace points... [0.099s] Sorting trace points... [1.549s] Computing alignments... [42.831s] Deallocating buffers... [0.019s] Loading trace points... [0.249s] Sorting trace points... [1.721s] Computing alignments... [44.562s] Deallocating buffers... [0.019s] Loading trace points... [0.213s] Sorting trace points... [1.596s] Computing alignments... [44.82s] Deallocating buffers... [0.023s] Loading trace points... [0.148s] Sorting trace points... [1.425s] Computing alignments... [44.953s] Deallocating buffers... [0.021s] Loading trace points... [0s] Sorting trace points... [1.404s] Computing alignments... [44.636s] Deallocating buffers... [0.022s] Loading trace points... [0s] [373.932s] Deallocating reference... [0.058s] Loading reference sequences... [31.203s] Masking reference... [32.049s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.007s] Building reference histograms... [32.369s] Allocating buffers... [0s] Processing query block 1, reference block 8/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.106s] Building query seed array... [1.476s] Computing hash join... [6.18s] Masking low complexity seeds... [0.208s] Searching alignments... [49.307s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 1/2, index chunk 2/4. Building reference seed array... [13.086s] Building query seed array... [2.118s] Computing hash join... [5.855s] Masking low complexity seeds... [0.24s] Searching alignments... [34.167s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 1/2, index chunk 3/4. Building reference seed array... [14.457s] Building query seed array... [2.014s] Computing hash join... [5.902s] Masking low complexity seeds... [0.257s] Searching alignments... [29.356s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.372s] Building query seed array... [1.633s] Computing hash join... [5.84s] Masking low complexity seeds... [0.217s] Searching alignments... [26.944s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.432s] Building query seed array... [1.457s] Computing hash join... [5.78s] Masking low complexity seeds... [0.197s] Searching alignments... [27.038s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.996s] Building query seed array... [1.707s] Computing hash join... [5.662s] Masking low complexity seeds... [0.243s] Searching alignments... [21.485s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 2/2, index chunk 3/4. Building reference seed array... [14.112s] Building query seed array... [1.761s] Computing hash join... [5.75s] Masking low complexity seeds... [0.194s] Searching alignments... [23.575s] Deallocating memory... [0s] Processing query block 1, reference block 8/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.24s] Building query seed array... [1.4s] Computing hash join... [5.433s] Masking low complexity seeds... [0.211s] Searching alignments... [22.313s] Deallocating memory... [0s] Deallocating buffers... [1.806s] Clearing query masking... [1.1s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [9.66s] Sorting trace points... [1.62s] Computing alignments... [42.915s] Deallocating buffers... [0.022s] Loading trace points... [0.106s] Sorting trace points... [1.344s] Computing alignments... [43.432s] Deallocating buffers... [0.02s] Loading trace points... [1.327s] Sorting trace points... [1.769s] Computing alignments... [42.668s] Deallocating buffers... [0.023s] Loading trace points... [0.097s] Sorting trace points... [1.296s] Computing alignments... [42.856s] Deallocating buffers... [0.019s] Loading trace points... [0.165s] Sorting trace points... [1.749s] Computing alignments... [44.723s] Deallocating buffers... [0.019s] Loading trace points... [0.071s] Sorting trace points... [1.458s] Computing alignments... [45.111s] Deallocating buffers... [0.021s] Loading trace points... [0.126s] Sorting trace points... [1.457s] Computing alignments... [45.276s] Deallocating buffers... [0.021s] Loading trace points... [0s] Sorting trace points... [1.369s] Computing alignments... [44.776s] Deallocating buffers... [0.022s] Loading trace points... [0s] [375.727s] Deallocating reference... [0.063s] Loading reference sequences... [30.327s] Masking reference... [30.864s] Initializing dictionary... [0.078s] Initializing temporary storage... [0.007s] Building reference histograms... [32.845s] Allocating buffers... [0s] Processing query block 1, reference block 9/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.175s] Building query seed array... [1.404s] Computing hash join... [6.435s] Masking low complexity seeds... [0.214s] Searching alignments... [52.205s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.498s] Building query seed array... [2.158s] Computing hash join... [6.645s] Masking low complexity seeds... [0.22s] Searching alignments... [35.456s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.691s] Building query seed array... [2.063s] Computing hash join... [6.487s] Masking low complexity seeds... [0.207s] Searching alignments... [30.073s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.394s] Building query seed array... [1.67s] Computing hash join... [6.496s] Masking low complexity seeds... [0.207s] Searching alignments... [26.284s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.543s] Building query seed array... [1.503s] Computing hash join... [6.961s] Masking low complexity seeds... [0.203s] Searching alignments... [26.074s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.362s] Building query seed array... [1.736s] Computing hash join... [6.344s] Masking low complexity seeds... [0.21s] Searching alignments... [22.252s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.981s] Building query seed array... [1.806s] Computing hash join... [6.42s] Masking low complexity seeds... [0.191s] Searching alignments... [24.205s] Deallocating memory... [0s] Processing query block 1, reference block 9/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.188s] Building query seed array... [1.525s] Computing hash join... [6.544s] Masking low complexity seeds... [0.203s] Searching alignments... [20.595s] Deallocating memory... [0s] Deallocating buffers... [1.192s] Clearing query masking... [1.086s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [9.372s] Sorting trace points... [1.762s] Computing alignments... [43.002s] Deallocating buffers... [0.021s] Loading trace points... [0.115s] Sorting trace points... [1.649s] Computing alignments... [43.203s] Deallocating buffers... [0.023s] Loading trace points... [0.09s] Sorting trace points... [1.282s] Computing alignments... [42.45s] Deallocating buffers... [0.02s] Loading trace points... [0.14s] Sorting trace points... [1.379s] Computing alignments... [42.64s] Deallocating buffers... [0.021s] Loading trace points... [0.165s] Sorting trace points... [1.829s] Computing alignments... [44.553s] Deallocating buffers... [0.019s] Loading trace points... [0.16s] Sorting trace points... [1.746s] Computing alignments... [44.863s] Deallocating buffers... [0.019s] Loading trace points... [0.129s] Sorting trace points... [1.746s] Computing alignments... [45.134s] Deallocating buffers... [0.019s] Loading trace points... [0s] Sorting trace points... [1.33s] Computing alignments... [44.755s] Deallocating buffers... [0.021s] Loading trace points... [0s] [373.822s] Deallocating reference... [0.06s] Loading reference sequences... [34.278s] Masking reference... [30.883s] Initializing dictionary... [0.077s] Initializing temporary storage... [0.007s] Building reference histograms... [32.563s] Allocating buffers... [0s] Processing query block 1, reference block 10/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.397s] Building query seed array... [1.503s] Computing hash join... [6.676s] Masking low complexity seeds... [0.214s] Searching alignments... [51.09s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.47s] Building query seed array... [2.229s] Computing hash join... [6.498s] Masking low complexity seeds... [0.199s] Searching alignments... [33.463s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.875s] Building query seed array... [2.017s] Computing hash join... [6.696s] Masking low complexity seeds... [0.201s] Searching alignments... [29.428s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.164s] Building query seed array... [1.676s] Computing hash join... [6.63s] Masking low complexity seeds... [0.218s] Searching alignments... [26.13s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.176s] Building query seed array... [1.54s] Computing hash join... [6.831s] Masking low complexity seeds... [0.214s] Searching alignments... [26.363s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.845s] Building query seed array... [1.826s] Computing hash join... [6.532s] Masking low complexity seeds... [0.199s] Searching alignments... [21.605s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.868s] Building query seed array... [1.839s] Computing hash join... [6.368s] Masking low complexity seeds... [0.205s] Searching alignments... [23.509s] Deallocating memory... [0s] Processing query block 1, reference block 10/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.174s] Building query seed array... [1.453s] Computing hash join... [6.472s] Masking low complexity seeds... [0.253s] Searching alignments... [21.379s] Deallocating memory... [0s] Deallocating buffers... [1.186s] Clearing query masking... [1.274s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [9.232s] Sorting trace points... [1.722s] Computing alignments... [42.796s] Deallocating buffers... [0.022s] Loading trace points... [0.146s] Sorting trace points... [1.338s] Computing alignments... [43.314s] Deallocating buffers... [0.02s] Loading trace points... [1.218s] Sorting trace points... [1.697s] Computing alignments... [42.428s] Deallocating buffers... [0.018s] Loading trace points... [0.103s] Sorting trace points... [1.622s] Computing alignments... [42.62s] Deallocating buffers... [0.018s] Loading trace points... [0.2s] Sorting trace points... [1.757s] Computing alignments... [44.495s] Deallocating buffers... [0.024s] Loading trace points... [0.201s] Sorting trace points... [2.011s] Computing alignments... [44.741s] Deallocating buffers... [0.207s] Loading trace points... [0.149s] Sorting trace points... [1.899s] Computing alignments... [44.83s] Deallocating buffers... [0.058s] Loading trace points... [0s] Sorting trace points... [1.729s] Computing alignments... [44.414s] Deallocating buffers... [0.19s] Loading trace points... [0s] [375.497s] Deallocating reference... [0.06s] Loading reference sequences... [31.745s] Masking reference... [30.897s] Initializing dictionary... [0.077s] Initializing temporary storage... [0.006s] Building reference histograms... [33.159s] Allocating buffers... [0s] Processing query block 1, reference block 11/14, shape 1/2, index chunk 1/4. Building reference seed array... [9.998s] Building query seed array... [1.475s] Computing hash join... [6.612s] Masking low complexity seeds... [0.199s] Searching alignments... [51.59s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.28s] Building query seed array... [2.208s] Computing hash join... [6.57s] Masking low complexity seeds... [0.207s] Searching alignments... [33.751s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.55s] Building query seed array... [1.968s] Computing hash join... [6.608s] Masking low complexity seeds... [0.204s] Searching alignments... [29.208s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.516s] Building query seed array... [1.598s] Computing hash join... [6.356s] Masking low complexity seeds... [0.22s] Searching alignments... [25.793s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.627s] Building query seed array... [1.56s] Computing hash join... [6.522s] Masking low complexity seeds... [0.253s] Searching alignments... [25.967s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.445s] Building query seed array... [1.697s] Computing hash join... [6.54s] Masking low complexity seeds... [0.196s] Searching alignments... [22.398s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.258s] Building query seed array... [1.837s] Computing hash join... [6.172s] Masking low complexity seeds... [0.198s] Searching alignments... [23.854s] Deallocating memory... [0s] Processing query block 1, reference block 11/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.086s] Building query seed array... [1.467s] Computing hash join... [6.326s] Masking low complexity seeds... [0.186s] Searching alignments... [19.852s] Deallocating memory... [0s] Deallocating buffers... [1.258s] Clearing query masking... [1.078s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [9.852s] Sorting trace points... [1.563s] Computing alignments... [42.993s] Deallocating buffers... [0.019s] Loading trace points... [0.101s] Sorting trace points... [1.602s] Computing alignments... [43.196s] Deallocating buffers... [0.023s] Loading trace points... [0.106s] Sorting trace points... [1.249s] Computing alignments... [42.34s] Deallocating buffers... [0.019s] Loading trace points... [0.118s] Sorting trace points... [1.36s] Computing alignments... [42.566s] Deallocating buffers... [0.021s] Loading trace points... [0.134s] Sorting trace points... [1.326s] Computing alignments... [44.408s] Deallocating buffers... [0.02s] Loading trace points... [0.15s] Sorting trace points... [1.806s] Computing alignments... [44.715s] Deallocating buffers... [0.019s] Loading trace points... [0.152s] Sorting trace points... [1.854s] Computing alignments... [44.849s] Deallocating buffers... [0.219s] Loading trace points... [0s] Sorting trace points... [1.714s] Computing alignments... [44.517s] Deallocating buffers... [0.024s] Loading trace points... [0s] [373.258s] Deallocating reference... [0.059s] Loading reference sequences... [32.679s] Masking reference... [31.185s] Initializing dictionary... [0.077s] Initializing temporary storage... [0.007s] Building reference histograms... [32.963s] Allocating buffers... [0s] Processing query block 1, reference block 12/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.202s] Building query seed array... [1.496s] Computing hash join... [6.708s] Masking low complexity seeds... [0.201s] Searching alignments... [52.238s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 1/2, index chunk 2/4. Building reference seed array... [12.341s] Building query seed array... [2.196s] Computing hash join... [6.639s] Masking low complexity seeds... [0.209s] Searching alignments... [33.845s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.959s] Building query seed array... [1.971s] Computing hash join... [6.651s] Masking low complexity seeds... [0.206s] Searching alignments... [29.163s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.468s] Building query seed array... [1.563s] Computing hash join... [6.308s] Masking low complexity seeds... [0.217s] Searching alignments... [27.772s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.013s] Building query seed array... [1.439s] Computing hash join... [6.636s] Masking low complexity seeds... [0.191s] Searching alignments... [26.94s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.439s] Building query seed array... [1.712s] Computing hash join... [6.543s] Masking low complexity seeds... [0.199s] Searching alignments... [21.631s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.298s] Building query seed array... [1.852s] Computing hash join... [6.234s] Masking low complexity seeds... [0.222s] Searching alignments... [23.177s] Deallocating memory... [0s] Processing query block 1, reference block 12/14, shape 2/2, index chunk 4/4. Building reference seed array... [10.131s] Building query seed array... [1.484s] Computing hash join... [6.458s] Masking low complexity seeds... [0.205s] Searching alignments... [20.51s] Deallocating memory... [0s] Deallocating buffers... [1.359s] Clearing query masking... [1.226s] Opening temporary output file... [0.001s] Computing alignments... Loading trace points... [9.217s] Sorting trace points... [1.759s] Computing alignments... [42.898s] Deallocating buffers... [0.018s] Loading trace points... [0.176s] Sorting trace points... [1.413s] Computing alignments... [43.257s] Deallocating buffers... [0.02s] Loading trace points... [0.149s] Sorting trace points... [1.633s] Computing alignments... [42.509s] Deallocating buffers... [0.018s] Loading trace points... [0.092s] Sorting trace points... [1.673s] Computing alignments... [42.848s] Deallocating buffers... [0.018s] Loading trace points... [0.147s] Sorting trace points... [1.842s] Computing alignments... [44.618s] Deallocating buffers... [0.05s] Loading trace points... [0.181s] Sorting trace points... [1.86s] Computing alignments... [45.053s] Deallocating buffers... [0.069s] Loading trace points... [0.114s] Sorting trace points... [1.396s] Computing alignments... [45.049s] Deallocating buffers... [0.022s] Loading trace points... [0s] Sorting trace points... [1.749s] Computing alignments... [44.743s] Deallocating buffers... [0.019s] Loading trace points... [0s] [374.84s] Deallocating reference... [0.055s] Loading reference sequences... [29.787s] Masking reference... [30.879s] Initializing dictionary... [0.077s] Initializing temporary storage... [0.006s] Building reference histograms... [32.506s] Allocating buffers... [0s] Processing query block 1, reference block 13/14, shape 1/2, index chunk 1/4. Building reference seed array... [10.489s] Building query seed array... [1.5s] Computing hash join... [6.385s] Masking low complexity seeds... [0.2s] Searching alignments... [50.253s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 1/2, index chunk 2/4. Building reference seed array... [13.247s] Building query seed array... [2.003s] Computing hash join... [5.509s] Masking low complexity seeds... [0.202s] Searching alignments... [34.436s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 1/2, index chunk 3/4. Building reference seed array... [13.851s] Building query seed array... [1.98s] Computing hash join... [5.642s] Masking low complexity seeds... [0.255s] Searching alignments... [29.728s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 1/2, index chunk 4/4. Building reference seed array... [10.926s] Building query seed array... [1.639s] Computing hash join... [6.088s] Masking low complexity seeds... [0.204s] Searching alignments... [26.004s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 2/2, index chunk 1/4. Building reference seed array... [10.737s] Building query seed array... [1.483s] Computing hash join... [5.839s] Masking low complexity seeds... [0.196s] Searching alignments... [26.46s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 2/2, index chunk 2/4. Building reference seed array... [12.459s] Building query seed array... [1.664s] Computing hash join... [5.671s] Masking low complexity seeds... [0.194s] Searching alignments... [22.116s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 2/2, index chunk 3/4. Building reference seed array... [13.9s] Building query seed array... [1.795s] Computing hash join... [5.712s] Masking low complexity seeds... [0.197s] Searching alignments... [23.361s] Deallocating memory... [0s] Processing query block 1, reference block 13/14, shape 2/2, index chunk 4/4. Building reference seed array... [11.114s] Building query seed array... [1.537s] Computing hash join... [5.429s] Masking low complexity seeds... [0.252s] Searching alignments... [20.296s] Deallocating memory... [0s] Deallocating buffers... [2.019s] Clearing query masking... [1.059s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [9.562s] Sorting trace points... [1.735s] Computing alignments... [43.081s] Deallocating buffers... [0.021s] Loading trace points... [0.056s] Sorting trace points... [1.64s] Computing alignments... [43.358s] Deallocating buffers... [0.225s] Loading trace points... [0.096s] Sorting trace points... [1.64s] Computing alignments... [42.274s] Deallocating buffers... [0.022s] Loading trace points... [1.1s] Sorting trace points... [1.726s] Computing alignments... [42.596s] Deallocating buffers... [0.018s] Loading trace points... [0.11s] Sorting trace points... [1.737s] Computing alignments... [44.471s] Deallocating buffers... [0.023s] Loading trace points... [0.177s] Sorting trace points... [1.304s] Computing alignments... [44.787s] Deallocating buffers... [0.021s] Loading trace points... [0.066s] Sorting trace points... [1.795s] Computing alignments... [44.757s] Deallocating buffers... [0.024s] Loading trace points... [0s] Sorting trace points... [1.323s] Computing alignments... [44.506s] Deallocating buffers... [0.023s] Loading trace points... [0s] [374.417s] Deallocating reference... [0.06s] Loading reference sequences... [23.64s] Masking reference... [25.012s] Initializing dictionary... [0.062s] Initializing temporary storage... [0.007s] Building reference histograms... [26.488s] Allocating buffers... [0s] Processing query block 1, reference block 14/14, shape 1/2, index chunk 1/4. Building reference seed array... [8.303s] Building query seed array... [1.514s] Computing hash join... [4.438s] Masking low complexity seeds... [0.194s] Searching alignments... [39.947s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 1/2, index chunk 2/4. Building reference seed array... [10.161s] Building query seed array... [2.057s] Computing hash join... [4.438s] Masking low complexity seeds... [0.208s] Searching alignments... [26.868s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 1/2, index chunk 3/4. Building reference seed array... [10.988s] Building query seed array... [1.984s] Computing hash join... [4.618s] Masking low complexity seeds... [0.205s] Searching alignments... [24.157s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 1/2, index chunk 4/4. Building reference seed array... [8.2s] Building query seed array... [1.66s] Computing hash join... [4.544s] Masking low complexity seeds... [0.192s] Searching alignments... [21.254s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 2/2, index chunk 1/4. Building reference seed array... [8.251s] Building query seed array... [1.452s] Computing hash join... [4.458s] Masking low complexity seeds... [0.26s] Searching alignments... [21.913s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 2/2, index chunk 2/4. Building reference seed array... [10.078s] Building query seed array... [1.612s] Computing hash join... [4.286s] Masking low complexity seeds... [0.18s] Searching alignments... [17.805s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 2/2, index chunk 3/4. Building reference seed array... [10.659s] Building query seed array... [1.835s] Computing hash join... [4.337s] Masking low complexity seeds... [0.23s] Searching alignments... [19.161s] Deallocating memory... [0s] Processing query block 1, reference block 14/14, shape 2/2, index chunk 4/4. Building reference seed array... [8.356s] Building query seed array... [1.438s] Computing hash join... [4.42s] Masking low complexity seeds... [0.187s] Searching alignments... [16.745s] Deallocating memory... [0s] Deallocating buffers... [0.587s] Clearing query masking... [1.06s] Opening temporary output file... [0s] Computing alignments... Loading trace points... [11.897s] Sorting trace points... [1.803s] Computing alignments... [51.504s] Deallocating buffers... [0.025s] Loading trace points... [0.232s] Sorting trace points... [1.734s] Computing alignments... [52.125s] Deallocating buffers... [0.023s] Loading trace points... [0.153s] Sorting trace points... [1.636s] Computing alignments... [51.612s] Deallocating buffers... [0.024s] Loading trace points... [0.2s] Sorting trace points... [2.139s] Computing alignments... [53.819s] Deallocating buffers... [0.028s] Loading trace points... [0.044s] Sorting trace points... [1.691s] Computing alignments... [53.255s] Deallocating buffers... [0.026s] Loading trace points... [0s] Sorting trace points... [0.679s] Computing alignments... [17.89s] Deallocating buffers... [0.008s] Loading trace points... [0s] [302.723s] Deallocating reference... [0.046s] Loading reference sequences... [0.083s] Deallocating buffers... [0s] Joining output blocks... Joining output blocks... [1531.52s] [1531.52s] Deallocating queries... [0.052s] Loading query sequences... [0s] Closing the input file... [0s] Closing the output file... Loading dictionary... [4.95s] [6.326s] Closing the database... [0s] Cleaning up... [0s] Total time = 13542.6s Reported 1588940147 pairwise alignments, 1588940147 HSPs. 9304766 queries aligned. DIAMOND BLASTx on /gscratch/srlab/sam/data/P_verrucosa/RNAseq/C21_R1.fastp-trim.20230215.fq.gz complete: C21_R1.blastx.meganized.daa Now MEGANizing C21_R1.blastx.meganized.daa Version MEGAN Community Edition (version 6.22.0, built 19 Feb 2022) Author(s) Daniel H. Huson Copyright (C) 2022 Daniel H. Huson. This program comes with ABSOLUTELY NO WARRANTY. Java version: 17.0.2 Functional classifications to use: EC, EGGNOG, GTDB, INTERPRO2GO, SEED Loading ncbi.map: 2,396,736 Loading ncbi.tre: 2,396,740 Loading ec.map: 8,200 Loading ec.tre: 8,204 Loading eggnog.map: 30,875 Loading eggnog.tre: 30,986 Loading gtdb.map: 240,103 Loading gtdb.tre: 240,107 Loading interpro2go.map: 14,242 Loading interpro2go.tre: 28,907 Loading seed.map: 961 Loading seed.tre: 962 Meganizing: C21_R1.blastx.meganized.daa Meganizing init Annotating DAA file using FAST mode (accession database and first accession per line) Annotating references 10% 20% 30% 40% 50% 60% 70% 100% (535.3s) Writing 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (2.6s) Binning reads Initializing... Initializing binning... Using 'Naive LCA' algorithm for binning: Taxonomy Using Best-Hit algorithm for binning: SEED Using Best-Hit algorithm for binning: EGGNOG Using 'Naive LCA' algorithm for binning: GTDB Using Best-Hit algorithm for binning: EC Using Best-Hit algorithm for binning: INTERPRO2GO Binning reads... Binning reads Analyzing alignments 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (3,063.5s) Total reads: 9,304,766 With hits: 9,304,766 Alignments: 1,585,296,748 Assig. Taxonomy: 7,964,253 Assig. SEED: 75,797 Assig. EGGNOG: 38,995 Assig. GTDB: 269,413 Assig. EC: 1,472,227 Assig. INTERPRO2GO: 844,894 MinSupport set to: 4652 Binning reads Applying min-support & disabled filter to Taxonomy... 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (0.3s) Min-supp. changes: 3,722 Binning reads Applying min-support & disabled filter to GTDB... 10% 20% 30% 40% 50% 60% 70% 80% 90% 100% (7.0s) Min-supp. changes: 2,834 Binning reads Writing classification tables 10% 20% 30% 40% 50% 60% 70% 80% 90% Caught: java.io.IOException: Disk quota exceeded at java.base/java.io.FileOutputStream.writeBytes(Native Method) at java.base/java.io.FileOutputStream.write(FileOutputStream.java:349) at java.base/java.io.BufferedOutputStream.write(BufferedOutputStream.java:123) at megan/megan.daa.io.DAAModifier.appendBlocks(DAAModifier.java:131) at megan/megan.daa.io.ModifyClassificationsDAA.saveClassifications(ModifyClassificationsDAA.java:68) at megan/megan.daa.connector.DAAConnector.updateClassifications(DAAConnector.java:166) at megan/megan.algorithms.DataProcessor.apply(DataProcessor.java:397) at megan/megan.core.Document.processReadHits(Document.java:545) at megan/megan.daa.Meganize.apply(Meganize.java:97) at megan/megan.tools.DAAMeganizer.run(DAAMeganizer.java:262) at megan/megan.tools.DAAMeganizer.main(DAAMeganizer.java:62) Error: Internal error: Data Processor failed: Disk quota exceeded Caught: java.io.IOException: Disk quota exceeded at java.base/java.io.RandomAccessFile.setLength(Native Method) at megan/megan.daa.io.DAAModifier.replaceBlock(DAAModifier.java:103) at megan/megan.daa.connector.DAAConnector.putAuxiliaryData(DAAConnector.java:205) at megan/megan.core.Document.saveAuxiliaryData(Document.java:596) at megan/megan.daa.Meganize.apply(Meganize.java:100) at megan/megan.tools.DAAMeganizer.run(DAAMeganizer.java:262) at megan/megan.tools.DAAMeganizer.main(DAAMeganizer.java:62)