Warning: the current version of HISAT2 (2.1.0) is older than the version (2.2.0) used to build the index.
         Users are strongly recommended to update HISAT2 to the latest version.
Warning: the current version of HISAT2 (2.1.0) is older than the version (2.2.0) used to build the index.
         Users are strongly recommended to update HISAT2 to the latest version.
22356889 reads; of these:
  22356889 (100.00%) were paired; of these:
    17505299 (78.30%) aligned concordantly 0 times
    4655659 (20.82%) aligned concordantly exactly 1 time
    195931 (0.88%) aligned concordantly >1 times
    ----
    17505299 pairs aligned concordantly 0 times; of these:
      5356543 (30.60%) aligned discordantly 1 time
    ----
    12148756 pairs aligned 0 times concordantly or discordantly; of these:
      24297512 mates make up the pairs; of these:
        11900200 (48.98%) aligned 0 times
        11342141 (46.68%) aligned exactly 1 time
        1055171 (4.34%) aligned >1 times
73.39% overall alignment rate