Warning: the current version of HISAT2 (2.1.0) is older than the version (2.2.0) used to build the index.
         Users are strongly recommended to update HISAT2 to the latest version.
Warning: the current version of HISAT2 (2.1.0) is older than the version (2.2.0) used to build the index.
         Users are strongly recommended to update HISAT2 to the latest version.
20264849 reads; of these:
  20264849 (100.00%) were paired; of these:
    11956216 (59.00%) aligned concordantly 0 times
    7960719 (39.28%) aligned concordantly exactly 1 time
    347914 (1.72%) aligned concordantly >1 times
    ----
    11956216 pairs aligned concordantly 0 times; of these:
      3368840 (28.18%) aligned discordantly 1 time
    ----
    8587376 pairs aligned 0 times concordantly or discordantly; of these:
      17174752 mates make up the pairs; of these:
        11618424 (67.65%) aligned 0 times
        4979280 (28.99%) aligned exactly 1 time
        577048 (3.36%) aligned >1 times
71.33% overall alignment rate