[2023-02-15 13:50:37,813] multiqc [DEBUG ] No MultiQC config found: /gscratch/srlab/programs/anaconda3/lib/python3.7/site-packages/multiqc_config.yaml [2023-02-15 13:50:37,830] multiqc [DEBUG ] Loading config settings from: /usr/lusers/samwhite/.multiqc_config.yaml [2023-02-15 13:50:37,830] multiqc [DEBUG ] New config 'star': {'fn': '*Log.final.out'} [2023-02-15 13:50:37,830] multiqc [DEBUG ] New config 'star/genecounts': {'fn': '*ReadsPerGene.out.tab'} [2023-02-15 13:50:37,830] multiqc [DEBUG ] Added to filename patterns: {'fastp': {'fn': '*report.json'}} [2023-02-15 13:50:37,830] multiqc [DEBUG ] New config 'hisat2': {'contents': 'HISAT2 summary stats:', 'shared': True} [2023-02-15 13:50:37,831] multiqc [DEBUG ] No MultiQC config found: multiqc_config.yaml [2023-02-15 13:50:37,831] multiqc [DEBUG ] Command used: /gscratch/srlab/programs/anaconda3/bin/multiqc . [2023-02-15 13:50:43,073] multiqc [DEBUG ] Could not connect to multiqc.info for version check: [2023-02-15 13:50:43,073] multiqc [INFO ] This is MultiQC v1.8 [2023-02-15 13:50:43,075] multiqc [DEBUG ] Command : /gscratch/srlab/programs/anaconda3/bin/multiqc . [2023-02-15 13:50:43,075] multiqc [DEBUG ] Working dir : /gscratch/scrubbed/samwhite/outputs/20230215-pver-fastqc-fastp-multiqc-E5-RNAseq [2023-02-15 13:50:43,075] multiqc [INFO ] Template : default [2023-02-15 13:50:43,075] multiqc [DEBUG ] Running Python 3.7.3 (default, Mar 27 2019, 22:11:17) [GCC 7.3.0] [2023-02-15 13:50:43,075] multiqc [INFO ] Searching : /gscratch/scrubbed/samwhite/outputs/20230215-pver-fastqc-fastp-multiqc-E5-RNAseq [2023-02-15 13:50:43,076] multiqc [DEBUG ] Analysing modules: custom_content, conpair, peddy, methylQA, phantompeakqualtools, qualimap, preseq, quast, qorts, rna_seqc, rsem, rseqc, busco, goleft_indexcov, disambiguate, supernova, deeptools, sargasso, verifybamid, mirtrace, happy, homer, macs2, theta2, snpeff, gatk, htseq, bcftools, featureCounts, fgbio, dedup, damageprofiler, biobambam2, mtnucratio, picard, prokka, samblaster, samtools, sexdeterrmine, bamtools, jellyfish, vcftools, longranger, stacks, bbmap, bismark, biscuit, hicexplorer, hicup, hicpro, salmon, kallisto, slamdunk, star, hisat2, tophat, bowtie2, bowtie1, kat, leehom, adapterRemoval, clipandmerge, cutadapt, flexbar, trimmomatic, skewer, sortmerna, biobloomtools, fastq_screen, afterqc, fastp, fastqc, minionqc, mosdepth, clusterflow, bcl2fastq, interop, flash, seqyclean [2023-02-15 13:50:43,076] multiqc [DEBUG ] Using temporary directory for creating report: /tmp/tmpz2k8zr5s [2023-02-15 13:50:43,971] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: E1_R2.fastp-trim.20230215_fastqc.html [2023-02-15 13:50:44,030] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: E9_R2.fastp-trim.20230215.fq.gz [2023-02-15 13:50:44,040] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: E5_R1_001_fastqc.html [2023-02-15 13:50:44,044] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: E10_R2.fastp-trim.20230215_fastqc.html [2023-02-15 13:50:44,044] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: E13_R2_001_fastqc.html [2023-02-15 13:50:44,045] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: E3_R1.fastp-trim.20230215.fq.gz [2023-02-15 13:50:44,046] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: C22_R2.fastp-trim.20230215_fastqc.html [2023-02-15 13:50:44,047] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: E15_R2.fastp-trim.20230215_fastqc.html [2023-02-15 13:50:44,047] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: C20_R1.fastp-trim.20230215.fq.gz [2023-02-15 13:50:44,048] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: E10_R1.fastp-trim.20230215_fastqc.html [2023-02-15 13:50:44,062] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: C28_R2_001_fastqc.html [2023-02-15 13:50:44,062] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: C19_R1_001_fastqc.html [2023-02-15 13:50:44,084] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: E5_R2.fastp-trim.20230215_fastqc.html [2023-02-15 13:50:44,084] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: C18_R2.fastp-trim.20230215.fq.gz [2023-02-15 13:50:44,103] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: E10_R2.fastp-trim.20230215.fq.gz [2023-02-15 13:50:44,104] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: E6_R2.fastp-trim.20230215_fastqc.html [2023-02-15 13:50:44,104] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: C19_R2_001_fastqc.html [2023-02-15 13:50:44,107] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: E6_R1.fastp-trim.20230215.fq.gz [2023-02-15 13:50:44,110] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: E8.fastp-trim.20230215.report.html [2023-02-15 13:50:44,110] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: E15_R1.fastp-trim.20230215.fq.gz [2023-02-15 13:50:44,110] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: E12_R1.fastp-trim.20230215.fq.gz [2023-02-15 13:50:44,110] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: E8_R1_001_fastqc.html [2023-02-15 13:50:44,125] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: E2_R1.fastp-trim.20230215.fq.gz [2023-02-15 13:50:44,125] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: E8_R2_001_fastqc.html [2023-02-15 13:50:44,126] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: E1.fastp-trim.20230215.report.html [2023-02-15 13:50:44,126] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: C24_R1_001_fastqc.html [2023-02-15 13:50:44,129] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: E5_R2.fastp-trim.20230215.fq.gz [2023-02-15 13:50:44,130] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: C19_R1.fastp-trim.20230215.fq.gz [2023-02-15 13:50:44,130] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: E1_R2_001_fastqc.html [2023-02-15 13:50:44,130] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: C30_R1.fastp-trim.20230215_fastqc.html [2023-02-15 13:50:44,131] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: C20_R1.fastp-trim.20230215_fastqc.html [2023-02-15 13:50:44,132] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: E8_R2.fastp-trim.20230215.fq.gz [2023-02-15 13:50:44,132] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: C29_R2.fastp-trim.20230215_fastqc.html [2023-02-15 13:50:44,132] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: C24_R1.fastp-trim.20230215.fq.gz [2023-02-15 13:50:44,132] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: C27_R2.fastp-trim.20230215_fastqc.html [2023-02-15 13:50:44,132] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: C21_R1_001_fastqc.html [2023-02-15 13:50:44,133] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: E13_R2.fastp-trim.20230215_fastqc.html [2023-02-15 13:50:44,133] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: E6_R1_001_fastqc.html [2023-02-15 13:50:44,134] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: C32_R1_001_fastqc.html [2023-02-15 13:50:44,135] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: C32_R2_001_fastqc.html [2023-02-15 13:50:44,135] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: E12_R1.fastp-trim.20230215_fastqc.html [2023-02-15 13:50:44,136] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: E12_R2.fastp-trim.20230215_fastqc.html [2023-02-15 13:50:44,136] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: E3_R1_001_fastqc.html [2023-02-15 13:50:44,137] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: E12.fastp-trim.20230215.report.html [2023-02-15 13:50:44,137] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: C22_R1.fastp-trim.20230215_fastqc.html [2023-02-15 13:50:44,138] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: C19_R2.fastp-trim.20230215.fq.gz [2023-02-15 13:50:44,139] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: E14_R2.fastp-trim.20230215_fastqc.html [2023-02-15 13:50:44,161] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: C26_R2.fastp-trim.20230215.fq.gz [2023-02-15 13:50:44,162] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: E4_R1.fastp-trim.20230215_fastqc.html [2023-02-15 13:50:44,163] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: C23_R1.fastp-trim.20230215.fq.gz [2023-02-15 13:50:44,163] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: C18_R1.fastp-trim.20230215_fastqc.html [2023-02-15 13:50:44,163] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: E4_R1_001_fastqc.html [2023-02-15 13:50:44,163] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: E14_R2.fastp-trim.20230215.fq.gz [2023-02-15 13:50:44,164] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: C22_R1_001_fastqc.html [2023-02-15 13:50:44,164] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: E11_R2.fastp-trim.20230215.fq.gz [2023-02-15 13:50:44,165] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: C19_R2.fastp-trim.20230215_fastqc.html [2023-02-15 13:50:44,165] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: C21_R1.fastp-trim.20230215.fq.gz [2023-02-15 13:50:44,166] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: E9_R2_001_fastqc.html [2023-02-15 13:50:44,167] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: E16_R2.fastp-trim.20230215_fastqc.html [2023-02-15 13:50:44,167] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: C24.fastp-trim.20230215.report.html [2023-02-15 13:50:44,167] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: E9_R1_001_fastqc.html [2023-02-15 13:50:44,167] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: C24_R1.fastp-trim.20230215_fastqc.html [2023-02-15 13:50:44,168] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: E11_R1.fastp-trim.20230215.fq.gz [2023-02-15 13:50:44,168] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: E2.fastp-trim.20230215.report.html [2023-02-15 13:50:44,168] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: E6_R2_001_fastqc.html [2023-02-15 13:50:44,169] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: C28_R1.fastp-trim.20230215.fq.gz [2023-02-15 13:50:44,169] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: E14_R1.fastp-trim.20230215_fastqc.html [2023-02-15 13:50:44,169] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: C18_R1_001_fastqc.html [2023-02-15 13:50:44,169] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: E10_R1_001_fastqc.html [2023-02-15 13:50:44,170] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: C20_R2_001_fastqc.html [2023-02-15 13:50:44,170] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: C17_R1.fastp-trim.20230215.fq.gz [2023-02-15 13:50:44,170] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: E10_R2_001_fastqc.html [2023-02-15 13:50:44,171] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: E15.fastp-trim.20230215.report.html [2023-02-15 13:50:44,171] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: E2_R2_001_fastqc.html [2023-02-15 13:50:44,172] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: C24_R2.fastp-trim.20230215.fq.gz [2023-02-15 13:50:44,172] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: E8_R2.fastp-trim.20230215_fastqc.html [2023-02-15 13:50:44,172] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: C31_R1.fastp-trim.20230215_fastqc.html [2023-02-15 13:50:44,172] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: E1_R1.fastp-trim.20230215_fastqc.html [2023-02-15 13:50:44,173] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: E14_R1.fastp-trim.20230215.fq.gz [2023-02-15 13:50:44,173] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: E13_R1.fastp-trim.20230215_fastqc.html [2023-02-15 13:50:44,174] multiqc [DEBUG ] Ignoring file as matched 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13:50:44,178] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: E13_R2.fastp-trim.20230215.fq.gz [2023-02-15 13:50:44,178] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: C21_R2_001_fastqc.html [2023-02-15 13:50:44,179] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: E7_R1_001_fastqc.html [2023-02-15 13:50:44,179] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: E3_R2_001_fastqc.html [2023-02-15 13:50:44,180] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: E7_R2_001_fastqc.html [2023-02-15 13:50:44,180] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: E2_R2.fastp-trim.20230215_fastqc.html [2023-02-15 13:50:44,180] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: C29_R1.fastp-trim.20230215_fastqc.html [2023-02-15 13:50:44,181] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: C25_R1_001_fastqc.html [2023-02-15 13:50:44,182] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: E4_R2.fastp-trim.20230215.fq.gz [2023-02-15 13:50:44,182] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: E1_R2.fastp-trim.20230215.fq.gz [2023-02-15 13:50:44,182] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: C18_R2.fastp-trim.20230215_fastqc.html [2023-02-15 13:50:44,182] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: C20_R2.fastp-trim.20230215.fq.gz [2023-02-15 13:50:44,183] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: E7.fastp-trim.20230215.report.html [2023-02-15 13:50:44,184] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: E16_R2.fastp-trim.20230215.fq.gz [2023-02-15 13:50:44,185] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: C23_R1.fastp-trim.20230215_fastqc.html [2023-02-15 13:50:44,185] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: C21_R2.fastp-trim.20230215.fq.gz [2023-02-15 13:50:44,185] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: C25_R2.fastp-trim.20230215.fq.gz [2023-02-15 13:50:44,186] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: C17.fastp-trim.20230215.report.html [2023-02-15 13:50:44,186] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: E6_R2.fastp-trim.20230215.fq.gz [2023-02-15 13:50:44,186] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: E13_R1.fastp-trim.20230215.fq.gz [2023-02-15 13:50:44,186] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: E9_R1.fastp-trim.20230215_fastqc.html [2023-02-15 13:50:44,186] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: E6.fastp-trim.20230215.report.html [2023-02-15 13:50:44,187] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: C25_R2_001_fastqc.html [2023-02-15 13:50:44,188] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: C17_R2.fastp-trim.20230215_fastqc.html [2023-02-15 13:50:44,188] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: C26.fastp-trim.20230215.report.html [2023-02-15 13:50:44,211] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: slurm-4460589.out [2023-02-15 13:50:44,214] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: slurm-4460589.out [2023-02-15 13:50:44,371] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: C29_R1_001_fastqc.html [2023-02-15 13:50:44,371] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: C25_R2.fastp-trim.20230215_fastqc.html [2023-02-15 13:50:44,371] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: E7_R2.fastp-trim.20230215.fq.gz [2023-02-15 13:50:44,372] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: trimmed_fastq_checksums.md5 [2023-02-15 13:50:44,372] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: E8_R1.fastp-trim.20230215.fq.gz [2023-02-15 13:50:44,373] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: E12_R1_001_fastqc.html [2023-02-15 13:50:44,373] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: C20_R1_001_fastqc.html [2023-02-15 13:50:44,373] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: E16_R1.fastp-trim.20230215.fq.gz [2023-02-15 13:50:44,373] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: E3.fastp-trim.20230215.report.html [2023-02-15 13:50:44,374] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: E4_R2.fastp-trim.20230215_fastqc.html [2023-02-15 13:50:44,374] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: E11_R1.fastp-trim.20230215_fastqc.html [2023-02-15 13:50:44,375] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: C23_R2.fastp-trim.20230215.fq.gz [2023-02-15 13:50:44,375] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: C31_R1_001_fastqc.html [2023-02-15 13:50:44,375] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: E7_R1.fastp-trim.20230215.fq.gz [2023-02-15 13:50:44,375] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: E11_R1_001_fastqc.html [2023-02-15 13:50:44,376] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: C30_R1.fastp-trim.20230215.fq.gz [2023-02-15 13:50:44,376] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: C30_R2.fastp-trim.20230215_fastqc.html [2023-02-15 13:50:44,376] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: C29_R2.fastp-trim.20230215.fq.gz [2023-02-15 13:50:44,376] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: C20_R2.fastp-trim.20230215_fastqc.html [2023-02-15 13:50:44,377] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: C21_R1.fastp-trim.20230215_fastqc.html [2023-02-15 13:50:44,377] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: C29_R2_001_fastqc.html [2023-02-15 13:50:44,378] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: C27_R1.fastp-trim.20230215_fastqc.html [2023-02-15 13:50:44,378] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: E4_R2_001_fastqc.html [2023-02-15 13:50:44,378] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: C30_R2.fastp-trim.20230215.fq.gz [2023-02-15 13:50:44,379] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: E16_R1_001_fastqc.html [2023-02-15 13:50:44,379] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: E15_R1_001_fastqc.html [2023-02-15 13:50:44,379] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: C19_R1.fastp-trim.20230215_fastqc.html [2023-02-15 13:50:44,380] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: E16_R2_001_fastqc.html [2023-02-15 13:50:44,380] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: C28_R2.fastp-trim.20230215_fastqc.html [2023-02-15 13:50:44,380] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: E8_R1.fastp-trim.20230215_fastqc.html [2023-02-15 13:50:44,380] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: C32_R2.fastp-trim.20230215_fastqc.html [2023-02-15 13:50:44,380] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: E11_R2.fastp-trim.20230215_fastqc.html [2023-02-15 13:50:44,381] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: C30.fastp-trim.20230215.report.html [2023-02-15 13:50:44,381] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: E2_R1.fastp-trim.20230215_fastqc.html [2023-02-15 13:50:44,381] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: E5_R2_001_fastqc.html [2023-02-15 13:50:44,381] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: E15_R2.fastp-trim.20230215.fq.gz [2023-02-15 13:50:44,381] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: C21_R2.fastp-trim.20230215_fastqc.html [2023-02-15 13:50:44,381] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: C32.fastp-trim.20230215.report.html [2023-02-15 13:50:44,382] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: C25_R1.fastp-trim.20230215_fastqc.html [2023-02-15 13:50:44,382] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: E10_R1.fastp-trim.20230215.fq.gz [2023-02-15 13:50:44,382] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: C20.fastp-trim.20230215.report.html [2023-02-15 13:50:44,383] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: C28.fastp-trim.20230215.report.html [2023-02-15 13:50:44,383] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: C31_R2_001_fastqc.html [2023-02-15 13:50:44,384] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: C27_R1_001_fastqc.html [2023-02-15 13:50:44,384] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: E14_R2_001_fastqc.html [2023-02-15 13:50:44,384] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: C26_R1_001_fastqc.html [2023-02-15 13:50:44,384] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: E15_R1.fastp-trim.20230215_fastqc.html [2023-02-15 13:50:44,384] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: E3_R2.fastp-trim.20230215_fastqc.html [2023-02-15 13:50:44,385] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: E6_R1.fastp-trim.20230215_fastqc.html [2023-02-15 13:50:44,385] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: C18.fastp-trim.20230215.report.html [2023-02-15 13:50:44,385] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: C31_R1.fastp-trim.20230215.fq.gz [2023-02-15 13:50:44,385] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: C22_R2_001_fastqc.html [2023-02-15 13:50:44,385] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: C31_R2.fastp-trim.20230215.fq.gz [2023-02-15 13:50:44,418] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 20230215-pver-fastqc-fastp-multiqc-E5-RNAseq.sh [2023-02-15 13:50:44,420] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 20230215-pver-fastqc-fastp-multiqc-E5-RNAseq.sh [2023-02-15 13:50:44,442] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: E1_R1.fastp-trim.20230215.fq.gz [2023-02-15 13:50:44,442] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: C26_R2.fastp-trim.20230215_fastqc.html [2023-02-15 13:50:44,443] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: E3_R2.fastp-trim.20230215.fq.gz [2023-02-15 13:50:44,443] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: C21.fastp-trim.20230215.report.html [2023-02-15 13:50:44,443] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: C22_R2.fastp-trim.20230215.fq.gz [2023-02-15 13:50:44,444] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: input_fastq_checksums.md5 [2023-02-15 13:50:44,444] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: C26_R1.fastp-trim.20230215_fastqc.html [2023-02-15 13:50:44,445] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: E10.fastp-trim.20230215.report.html [2023-02-15 13:50:44,445] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: C24_R2_001_fastqc.html [2023-02-15 13:50:44,446] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: E13_R1_001_fastqc.html [2023-02-15 13:50:44,446] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: C25.fastp-trim.20230215.report.html [2023-02-15 13:50:44,446] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: E15_R2_001_fastqc.html [2023-02-15 13:50:44,447] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: C30_R1_001_fastqc.html [2023-02-15 13:50:44,447] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: E9.fastp-trim.20230215.report.html [2023-02-15 13:50:44,447] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: C19.fastp-trim.20230215.report.html [2023-02-15 13:50:44,448] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: C23_R2_001_fastqc.html [2023-02-15 13:50:44,448] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: C26_R2_001_fastqc.html [2023-02-15 13:50:44,448] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: C17_R2_001_fastqc.html [2023-02-15 13:50:44,448] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: E12_R2.fastp-trim.20230215.fq.gz [2023-02-15 13:50:44,449] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: C23_R2.fastp-trim.20230215_fastqc.html [2023-02-15 13:50:44,449] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: C28_R1_001_fastqc.html [2023-02-15 13:50:44,449] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: E3_R1.fastp-trim.20230215_fastqc.html [2023-02-15 13:50:44,449] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: E2_R1_001_fastqc.html [2023-02-15 13:50:44,450] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: E16_R1.fastp-trim.20230215_fastqc.html [2023-02-15 13:50:44,450] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: E13.fastp-trim.20230215.report.html [2023-02-15 13:50:44,451] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: C32_R2.fastp-trim.20230215.fq.gz [2023-02-15 13:50:44,452] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: C27_R2.fastp-trim.20230215.fq.gz [2023-02-15 13:50:44,452] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: C23_R1_001_fastqc.html [2023-02-15 13:50:44,452] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: E5.fastp-trim.20230215.report.html [2023-02-15 13:50:44,452] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: E9_R2.fastp-trim.20230215_fastqc.html [2023-02-15 13:50:44,452] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: C28_R1.fastp-trim.20230215_fastqc.html [2023-02-15 13:50:44,453] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: E2_R2.fastp-trim.20230215.fq.gz [2023-02-15 13:50:44,453] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: C27_R2_001_fastqc.html [2023-02-15 13:50:44,454] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: C22_R1.fastp-trim.20230215.fq.gz [2023-02-15 13:50:44,454] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: C31_R2.fastp-trim.20230215_fastqc.html [2023-02-15 13:50:44,454] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: E14.fastp-trim.20230215.report.html [2023-02-15 13:50:44,455] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: C17_R2.fastp-trim.20230215.fq.gz [2023-02-15 13:50:44,455] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: C29_R1.fastp-trim.20230215.fq.gz [2023-02-15 13:50:44,455] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: E5_R1.fastp-trim.20230215.fq.gz [2023-02-15 13:50:44,455] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: E7_R2.fastp-trim.20230215_fastqc.html [2023-02-15 13:50:44,456] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: E11_R2_001_fastqc.html [2023-02-15 13:50:44,456] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: E1_R1_001_fastqc.html [2023-02-15 13:50:44,457] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: C28_R2.fastp-trim.20230215.fq.gz [2023-02-15 13:50:44,458] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: C18_R1.fastp-trim.20230215.fq.gz [2023-02-15 13:50:44,458] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: E16.fastp-trim.20230215.report.html [2023-02-15 13:50:44,458] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: E4.fastp-trim.20230215.report.html [2023-02-15 13:50:44,458] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: C23.fastp-trim.20230215.report.html [2023-02-15 13:50:44,458] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: C32_R1.fastp-trim.20230215_fastqc.html [2023-02-15 13:50:44,458] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: E14_R1_001_fastqc.html [2023-02-15 13:50:44,459] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: E5_R1.fastp-trim.20230215_fastqc.html [2023-02-15 13:50:44,460] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: C22.fastp-trim.20230215.report.html [2023-02-15 13:50:44,460] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: E4_R1.fastp-trim.20230215.fq.gz [2023-02-15 13:50:44,460] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: C27.fastp-trim.20230215.report.html [2023-02-15 13:50:44,460] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: C25_R1.fastp-trim.20230215.fq.gz [2023-02-15 13:50:44,461] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: E11.fastp-trim.20230215.report.html [2023-02-15 13:50:44,462] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: C18_R2_001_fastqc.html [2023-02-15 13:50:44,462] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: C24_R2.fastp-trim.20230215_fastqc.html [2023-02-15 13:50:44,462] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: C31.fastp-trim.20230215.report.html [2023-02-15 13:50:44,463] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: C17_R1.fastp-trim.20230215_fastqc.html [2023-02-15 13:50:49,491] multiqc.plots.bargraph [DEBUG ] Using matplotlib version 2.2.4 [2023-02-15 13:50:49,515] multiqc.plots.linegraph [DEBUG ] Using matplotlib version 2.2.4 [2023-02-15 13:50:49,554] multiqc [DEBUG ] No samples found: custom_content [2023-02-15 13:50:49,583] multiqc [DEBUG ] No samples found: conpair [2023-02-15 13:50:49,610] multiqc [DEBUG ] No samples found: peddy [2023-02-15 13:50:49,639] multiqc [DEBUG ] No samples found: methylQA [2023-02-15 13:50:49,663] multiqc [DEBUG ] No samples found: phantompeakqualtools [2023-02-15 13:50:49,757] multiqc [DEBUG ] No samples found: qualimap [2023-02-15 13:50:49,790] multiqc [DEBUG ] No samples found: preseq [2023-02-15 13:50:49,817] multiqc [DEBUG ] No samples found: quast [2023-02-15 13:50:49,838] multiqc [DEBUG ] No samples found: qorts [2023-02-15 13:50:49,906] multiqc [DEBUG ] No samples found: rna_seqc [2023-02-15 13:50:49,967] multiqc [DEBUG ] No samples found: rsem [2023-02-15 13:50:50,034] multiqc [DEBUG ] No samples found: rseqc [2023-02-15 13:50:50,065] multiqc [DEBUG ] No samples found: busco [2023-02-15 13:50:50,110] multiqc [DEBUG ] No samples found: goleft_indexcov [2023-02-15 13:50:50,127] multiqc [DEBUG ] No samples found: disambiguate [2023-02-15 13:50:50,161] multiqc [DEBUG ] No samples found: supernova [2023-02-15 13:50:50,210] multiqc [DEBUG ] No samples found: deeptools [2023-02-15 13:50:50,228] multiqc [DEBUG ] No samples found: sargasso [2023-02-15 13:50:50,255] multiqc [DEBUG ] No samples found: verifybamid [2023-02-15 13:50:50,281] multiqc [DEBUG ] No samples found: mirtrace [2023-02-15 13:50:50,313] multiqc [DEBUG ] No samples found: happy [2023-02-15 13:50:50,352] multiqc [DEBUG ] No samples found: homer [2023-02-15 13:50:50,362] multiqc [DEBUG ] No samples found: macs2 [2023-02-15 13:50:50,369] multiqc [DEBUG ] No samples found: theta2 [2023-02-15 13:50:50,384] multiqc [DEBUG ] No samples found: snpeff [2023-02-15 13:50:50,451] multiqc [DEBUG ] No samples found: gatk [2023-02-15 13:50:50,463] multiqc [DEBUG ] No samples found: htseq [2023-02-15 13:50:50,493] multiqc [DEBUG ] No samples found: bcftools [2023-02-15 13:50:50,503] multiqc [DEBUG ] No samples found: featureCounts [2023-02-15 13:50:50,515] multiqc [DEBUG ] No samples found: fgbio [2023-02-15 13:50:50,525] multiqc [DEBUG ] No samples found: dedup [2023-02-15 13:50:50,541] multiqc [DEBUG ] No samples found: damageprofiler [2023-02-15 13:50:50,679] multiqc [DEBUG ] No samples found: biobambam2 [2023-02-15 13:50:50,690] multiqc [DEBUG ] No samples found: mtnucratio [2023-02-15 13:50:50,696] multiqc [DEBUG ] No samples found: picard [2023-02-15 13:50:50,707] multiqc [DEBUG ] No samples found: prokka [2023-02-15 13:50:50,717] multiqc [DEBUG ] No samples found: samblaster [2023-02-15 13:50:50,809] multiqc [DEBUG ] No samples found: samtools [2023-02-15 13:50:50,834] multiqc [DEBUG ] No samples found: sexdeterrmine [2023-02-15 13:50:50,871] multiqc [DEBUG ] No samples found: bamtools [2023-02-15 13:50:50,880] multiqc [DEBUG ] No samples found: jellyfish [2023-02-15 13:50:50,896] multiqc [DEBUG ] No samples found: vcftools [2023-02-15 13:50:50,923] multiqc [DEBUG ] No samples found: longranger [2023-02-15 13:50:50,961] multiqc [DEBUG ] No samples found: stacks [2023-02-15 13:50:51,020] multiqc [DEBUG ] No samples found: bbmap [2023-02-15 13:50:51,040] multiqc [DEBUG ] No samples found: bismark [2023-02-15 13:50:51,073] multiqc [DEBUG ] No samples found: biscuit [2023-02-15 13:50:51,085] multiqc [DEBUG ] No samples found: hicexplorer [2023-02-15 13:50:51,154] multiqc [DEBUG ] No samples found: hicup [2023-02-15 13:50:51,167] multiqc [DEBUG ] No samples found: hicpro [2023-02-15 13:50:51,177] multiqc [DEBUG ] No samples found: salmon [2023-02-15 13:50:51,209] multiqc [DEBUG ] No samples found: kallisto [2023-02-15 13:50:51,234] multiqc [DEBUG ] No samples found: slamdunk [2023-02-15 13:50:51,261] multiqc [DEBUG ] No samples found: star [2023-02-15 13:50:51,296] multiqc [DEBUG ] No samples found: hisat2 [2023-02-15 13:50:51,314] multiqc [DEBUG ] No samples found: tophat [2023-02-15 13:50:51,326] multiqc [DEBUG ] No samples found: bowtie2 [2023-02-15 13:50:51,364] multiqc [DEBUG ] No samples found: bowtie1 [2023-02-15 13:50:51,376] multiqc [DEBUG ] No samples found: kat [2023-02-15 13:50:51,387] multiqc [DEBUG ] No samples found: leehom [2023-02-15 13:50:51,415] multiqc [DEBUG ] No samples found: adapterRemoval [2023-02-15 13:50:51,425] multiqc [DEBUG ] No samples found: clipandmerge [2023-02-15 13:50:51,460] multiqc [DEBUG ] No samples found: cutadapt [2023-02-15 13:50:51,473] multiqc [DEBUG ] No samples found: flexbar [2023-02-15 13:50:51,495] multiqc [DEBUG ] No samples found: trimmomatic [2023-02-15 13:50:51,529] multiqc [DEBUG ] No samples found: skewer [2023-02-15 13:50:51,541] multiqc [DEBUG ] No samples found: sortmerna [2023-02-15 13:50:51,567] multiqc [DEBUG ] No samples found: biobloomtools [2023-02-15 13:50:51,612] multiqc [DEBUG ] No samples found: fastq_screen [2023-02-15 13:50:51,664] multiqc [DEBUG ] No samples found: afterqc [2023-02-15 13:50:51,701] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: E3.fastp-trim.20230215.report.json [2023-02-15 13:50:51,708] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: C27.fastp-trim.20230215.report.json [2023-02-15 13:50:51,714] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: E4.fastp-trim.20230215.report.json [2023-02-15 13:50:51,720] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: E14.fastp-trim.20230215.report.json [2023-02-15 13:50:51,727] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: C30.fastp-trim.20230215.report.json [2023-02-15 13:50:51,733] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: C26.fastp-trim.20230215.report.json [2023-02-15 13:50:51,739] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: C23.fastp-trim.20230215.report.json [2023-02-15 13:50:51,745] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: C32.fastp-trim.20230215.report.json [2023-02-15 13:50:51,750] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: C22.fastp-trim.20230215.report.json [2023-02-15 13:50:51,755] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: C18.fastp-trim.20230215.report.json [2023-02-15 13:50:51,761] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: E7.fastp-trim.20230215.report.json [2023-02-15 13:50:51,766] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: C31.fastp-trim.20230215.report.json [2023-02-15 13:50:51,771] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: E8.fastp-trim.20230215.report.json [2023-02-15 13:50:51,776] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: C17.fastp-trim.20230215.report.json [2023-02-15 13:50:51,781] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: C28.fastp-trim.20230215.report.json [2023-02-15 13:50:51,786] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: C20.fastp-trim.20230215.report.json [2023-02-15 13:50:51,791] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: E6.fastp-trim.20230215.report.json [2023-02-15 13:50:51,796] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: E1.fastp-trim.20230215.report.json [2023-02-15 13:50:51,811] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: C24.fastp-trim.20230215.report.json [2023-02-15 13:50:51,818] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: E10.fastp-trim.20230215.report.json [2023-02-15 13:50:51,826] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: E16.fastp-trim.20230215.report.json [2023-02-15 13:50:51,834] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: E12.fastp-trim.20230215.report.json [2023-02-15 13:50:51,865] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: C19.fastp-trim.20230215.report.json [2023-02-15 13:50:51,872] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: E13.fastp-trim.20230215.report.json [2023-02-15 13:50:51,879] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: C21.fastp-trim.20230215.report.json [2023-02-15 13:50:51,886] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: E5.fastp-trim.20230215.report.json [2023-02-15 13:50:51,893] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: E9.fastp-trim.20230215.report.json [2023-02-15 13:50:51,899] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: C29.fastp-trim.20230215.report.json [2023-02-15 13:50:51,905] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: E2.fastp-trim.20230215.report.json [2023-02-15 13:50:51,911] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: E15.fastp-trim.20230215.report.json [2023-02-15 13:50:51,917] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: C25.fastp-trim.20230215.report.json [2023-02-15 13:50:51,922] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: E11.fastp-trim.20230215.report.json [2023-02-15 13:50:51,924] multiqc.modules.fastp.fastp [INFO ] Found 32 reports [2023-02-15 13:51:17,638] multiqc.modules.fastqc.fastqc [INFO ] Found 128 reports [2023-02-15 13:51:29,126] multiqc [DEBUG ] No samples found: minionqc [2023-02-15 13:51:29,157] multiqc [DEBUG ] No samples found: mosdepth [2023-02-15 13:51:29,184] multiqc [DEBUG ] No samples found: clusterflow [2023-02-15 13:51:29,218] multiqc [DEBUG ] No samples found: bcl2fastq [2023-02-15 13:51:29,257] multiqc [DEBUG ] No samples found: interop [2023-02-15 13:51:29,281] multiqc [DEBUG ] No samples found: flash [2023-02-15 13:51:29,301] multiqc [DEBUG ] No samples found: seqyclean [2023-02-15 13:51:29,568] multiqc [INFO ] Compressing plot data [2023-02-15 13:51:32,109] multiqc [INFO ] Report : multiqc_report.html [2023-02-15 13:51:32,111] multiqc [INFO ] Data : multiqc_data [2023-02-15 13:51:32,113] multiqc [DEBUG ] Moving data file from '/tmp/tmpz2k8zr5s/multiqc_data/multiqc_qualimap_bamqc_genome_results.txt' to '/gscratch/scrubbed/samwhite/outputs/20230215-pver-fastqc-fastp-multiqc-E5-RNAseq/multiqc_data' [2023-02-15 13:51:32,114] multiqc [DEBUG ] Moving data file from '/tmp/tmpz2k8zr5s/multiqc_data/multiqc_fastp.txt' to '/gscratch/scrubbed/samwhite/outputs/20230215-pver-fastqc-fastp-multiqc-E5-RNAseq/multiqc_data' [2023-02-15 13:51:32,115] multiqc [DEBUG ] Moving data file from '/tmp/tmpz2k8zr5s/multiqc_data/multiqc_fastqc.txt' to '/gscratch/scrubbed/samwhite/outputs/20230215-pver-fastqc-fastp-multiqc-E5-RNAseq/multiqc_data' [2023-02-15 13:51:32,116] multiqc [DEBUG ] Moving data file from '/tmp/tmpz2k8zr5s/multiqc_data/mqc_fastqc_sequence_counts_plot_1.txt' to '/gscratch/scrubbed/samwhite/outputs/20230215-pver-fastqc-fastp-multiqc-E5-RNAseq/multiqc_data' [2023-02-15 13:51:32,117] multiqc [DEBUG ] Moving data file from '/tmp/tmpz2k8zr5s/multiqc_data/mqc_fastqc_per_base_sequence_quality_plot_1.txt' to '/gscratch/scrubbed/samwhite/outputs/20230215-pver-fastqc-fastp-multiqc-E5-RNAseq/multiqc_data' [2023-02-15 13:51:32,118] multiqc [DEBUG ] Moving data file from '/tmp/tmpz2k8zr5s/multiqc_data/mqc_fastqc_per_sequence_quality_scores_plot_1.txt' to '/gscratch/scrubbed/samwhite/outputs/20230215-pver-fastqc-fastp-multiqc-E5-RNAseq/multiqc_data' [2023-02-15 13:51:32,119] multiqc [DEBUG ] Moving data file from '/tmp/tmpz2k8zr5s/multiqc_data/mqc_fastqc_per_sequence_gc_content_plot_Percentages.txt' to '/gscratch/scrubbed/samwhite/outputs/20230215-pver-fastqc-fastp-multiqc-E5-RNAseq/multiqc_data' [2023-02-15 13:51:32,120] multiqc [DEBUG ] Moving data file from '/tmp/tmpz2k8zr5s/multiqc_data/mqc_fastqc_per_sequence_gc_content_plot_Counts.txt' to '/gscratch/scrubbed/samwhite/outputs/20230215-pver-fastqc-fastp-multiqc-E5-RNAseq/multiqc_data' [2023-02-15 13:51:32,121] multiqc [DEBUG ] Moving data file from '/tmp/tmpz2k8zr5s/multiqc_data/mqc_fastqc_per_base_n_content_plot_1.txt' to '/gscratch/scrubbed/samwhite/outputs/20230215-pver-fastqc-fastp-multiqc-E5-RNAseq/multiqc_data' [2023-02-15 13:51:32,122] multiqc [DEBUG ] Moving data file from '/tmp/tmpz2k8zr5s/multiqc_data/mqc_fastqc_sequence_length_distribution_plot_1.txt' to '/gscratch/scrubbed/samwhite/outputs/20230215-pver-fastqc-fastp-multiqc-E5-RNAseq/multiqc_data' [2023-02-15 13:51:32,123] multiqc [DEBUG ] Moving data file from '/tmp/tmpz2k8zr5s/multiqc_data/mqc_fastqc_sequence_duplication_levels_plot_1.txt' to '/gscratch/scrubbed/samwhite/outputs/20230215-pver-fastqc-fastp-multiqc-E5-RNAseq/multiqc_data' [2023-02-15 13:51:32,124] multiqc [DEBUG ] Moving data file from '/tmp/tmpz2k8zr5s/multiqc_data/mqc_fastqc_overrepresented_sequencesi_plot_1.txt' to '/gscratch/scrubbed/samwhite/outputs/20230215-pver-fastqc-fastp-multiqc-E5-RNAseq/multiqc_data' [2023-02-15 13:51:32,125] multiqc [DEBUG ] Moving data file from '/tmp/tmpz2k8zr5s/multiqc_data/multiqc_general_stats.txt' to '/gscratch/scrubbed/samwhite/outputs/20230215-pver-fastqc-fastp-multiqc-E5-RNAseq/multiqc_data' [2023-02-15 13:51:32,126] multiqc [DEBUG ] Moving data file from '/tmp/tmpz2k8zr5s/multiqc_data/multiqc_sources.txt' to '/gscratch/scrubbed/samwhite/outputs/20230215-pver-fastqc-fastp-multiqc-E5-RNAseq/multiqc_data' [2023-02-15 13:51:32,127] multiqc [DEBUG ] Moving data file from '/tmp/tmpz2k8zr5s/multiqc_data/multiqc_data.json' to '/gscratch/scrubbed/samwhite/outputs/20230215-pver-fastqc-fastp-multiqc-E5-RNAseq/multiqc_data' [2023-02-15 13:51:32,803] multiqc [INFO ] MultiQC complete