FastQCFastQC Report
Wed 15 Feb 2023
C27_R1.fastp-trim.20230215.fq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameC27_R1.fastp-trim.20230215.fq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences23741291
Sequences flagged as poor quality0
Sequence length15-130
%GC42

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GAACTCCAGTCACGAATTCGTATCTCGTATGCCGTCTTCTGCTTGAAAAA420130.1769617330413919Illumina PCR Primer Index 2 (96% over 27bp)

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)