[2023-01-22 15:09:55,976] multiqc [DEBUG ] No MultiQC config found: /gscratch/srlab/programs/anaconda3/lib/python3.7/site-packages/multiqc_config.yaml [2023-01-22 15:09:55,982] multiqc [DEBUG ] Loading config settings from: /usr/lusers/samwhite/.multiqc_config.yaml [2023-01-22 15:09:55,982] multiqc [DEBUG ] New config 'star': {'fn': '*Log.final.out'} [2023-01-22 15:09:55,982] multiqc [DEBUG ] New config 'star/genecounts': {'fn': '*ReadsPerGene.out.tab'} [2023-01-22 15:09:55,983] multiqc [DEBUG ] Added to filename patterns: {'fastp': {'fn': '*report.json'}} [2023-01-22 15:09:55,983] multiqc [DEBUG ] New config 'hisat2': {'contents': 'HISAT2 summary stats:', 'shared': True} [2023-01-22 15:09:55,983] multiqc [DEBUG ] No MultiQC config found: multiqc_config.yaml [2023-01-22 15:09:55,983] multiqc [DEBUG ] Command used: /gscratch/srlab/programs/anaconda3/bin/multiqc . [2023-01-22 15:10:01,146] multiqc [DEBUG ] Could not connect to multiqc.info for version check: [2023-01-22 15:10:01,146] multiqc [INFO ] This is MultiQC v1.8 [2023-01-22 15:10:01,147] multiqc [DEBUG ] Command : /gscratch/srlab/programs/anaconda3/bin/multiqc . [2023-01-22 15:10:01,147] multiqc [DEBUG ] Working dir : /gscratch/scrubbed/samwhite/outputs/20230119-coral-fastqc-fastp-multiqc-PRJNA744403/data/P_meandrina/RNA-seq [2023-01-22 15:10:01,147] multiqc [INFO ] Template : default [2023-01-22 15:10:01,147] multiqc [DEBUG ] Running Python 3.7.3 (default, Mar 27 2019, 22:11:17) [GCC 7.3.0] [2023-01-22 15:10:01,147] multiqc [INFO ] Searching : /gscratch/scrubbed/samwhite/outputs/20230119-coral-fastqc-fastp-multiqc-PRJNA744403/data/P_meandrina/RNA-seq [2023-01-22 15:10:01,148] multiqc [DEBUG ] Analysing modules: custom_content, conpair, peddy, methylQA, phantompeakqualtools, qualimap, preseq, quast, qorts, rna_seqc, rsem, rseqc, busco, goleft_indexcov, disambiguate, supernova, deeptools, sargasso, verifybamid, mirtrace, happy, homer, macs2, theta2, snpeff, gatk, htseq, bcftools, featureCounts, fgbio, dedup, damageprofiler, biobambam2, mtnucratio, picard, prokka, samblaster, samtools, sexdeterrmine, bamtools, jellyfish, vcftools, longranger, stacks, bbmap, bismark, biscuit, hicexplorer, hicup, hicpro, salmon, kallisto, slamdunk, star, hisat2, tophat, bowtie2, bowtie1, kat, leehom, adapterRemoval, clipandmerge, cutadapt, flexbar, trimmomatic, skewer, sortmerna, biobloomtools, fastq_screen, afterqc, fastp, fastqc, minionqc, mosdepth, clusterflow, bcl2fastq, interop, flash, seqyclean [2023-01-22 15:10:01,148] multiqc [DEBUG ] Using temporary directory for creating report: /tmp/tmppwbqu3kb [2023-01-22 15:10:01,627] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRR15101721_1_fastqc.html [2023-01-22 15:10:01,628] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRR15101713_2.fastq.gz [2023-01-22 15:10:01,628] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRR15101722_1.fastq.gz [2023-01-22 15:10:01,628] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRR15101705_1_fastqc.html [2023-01-22 15:10:01,629] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRR15101696_2.fastq.gz [2023-01-22 15:10:01,629] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRR15101694_2.fastq.gz [2023-01-22 15:10:01,629] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRR15101706_2_fastqc.html [2023-01-22 15:10:01,630] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRR15101708_1.fastq.gz [2023-01-22 15:10:01,630] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRR15101703_1.fastq.gz [2023-01-22 15:10:01,631] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRR15101724_1.fastq.gz [2023-01-22 15:10:01,634] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRR15101696_2_fastqc.html [2023-01-22 15:10:01,636] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRR15101692_2.fastq.gz [2023-01-22 15:10:01,636] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRR15101694_2_fastqc.html [2023-01-22 15:10:01,637] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRR15101721_2_fastqc.html [2023-01-22 15:10:01,638] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRR15101703_2.fastq.gz [2023-01-22 15:10:01,638] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRR15101707_1.fastq.gz [2023-01-22 15:10:01,639] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRR15101719_2.fastq.gz [2023-01-22 15:10:01,640] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRR15101695_1_fastqc.html [2023-01-22 15:10:01,640] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRR15101701_2.fastq.gz [2023-01-22 15:10:01,641] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRR15101706_2.fastq.gz [2023-01-22 15:10:01,641] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRR15101691_2.fastq.gz [2023-01-22 15:10:01,642] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRR15101711_1_fastqc.html [2023-01-22 15:10:01,643] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRR15101712_2.fastq.gz [2023-01-22 15:10:01,643] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRR15101704_1.fastq.gz [2023-01-22 15:10:01,644] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRR15101721_1.fastq.gz [2023-01-22 15:10:01,644] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRR15101693_1_fastqc.html [2023-01-22 15:10:01,644] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRR15101701_1_fastqc.html [2023-01-22 15:10:01,645] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRR15101706_1.fastq.gz [2023-01-22 15:10:01,645] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRR15101697_2.fastq.gz [2023-01-22 15:10:01,645] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRR15101711_2_fastqc.html [2023-01-22 15:10:01,646] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRR15101689_2.fastq.gz [2023-01-22 15:10:01,646] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRR15101711_2.fastq.gz [2023-01-22 15:10:01,647] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRR15101704_2.fastq.gz [2023-01-22 15:10:01,647] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRR15101712_2_fastqc.html [2023-01-22 15:10:01,649] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRR15101699_2_fastqc.html [2023-01-22 15:10:01,649] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRR15101693_2_fastqc.html [2023-01-22 15:10:01,649] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRR15101703_2_fastqc.html [2023-01-22 15:10:01,650] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRR15101697_2_fastqc.html [2023-01-22 15:10:01,650] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRR15101696_1_fastqc.html [2023-01-22 15:10:01,651] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRR15101724_2_fastqc.html [2023-01-22 15:10:01,652] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRR15101688_1_fastqc.html [2023-01-22 15:10:01,652] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRR15101688_2_fastqc.html [2023-01-22 15:10:01,653] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRR15101699_1.fastq.gz [2023-01-22 15:10:01,654] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRR15101722_1_fastqc.html [2023-01-22 15:10:01,654] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRR15101688_2.fastq.gz [2023-01-22 15:10:01,654] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRR15101718_2_fastqc.html [2023-01-22 15:10:01,655] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRR15101724_2.fastq.gz [2023-01-22 15:10:01,655] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRR15101703_1_fastqc.html [2023-01-22 15:10:01,655] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRR15101718_1_fastqc.html [2023-01-22 15:10:01,656] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRR15101710_1_fastqc.html [2023-01-22 15:10:01,656] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRR15101688_1.fastq.gz [2023-01-22 15:10:01,656] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRR15101697_1.fastq.gz [2023-01-22 15:10:01,657] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRR15101704_2_fastqc.html [2023-01-22 15:10:01,657] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRR15101692_1.fastq.gz [2023-01-22 15:10:01,657] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRR15101707_2.fastq.gz [2023-01-22 15:10:01,658] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRR15101705_2.fastq.gz [2023-01-22 15:10:01,658] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRR15101722_2.fastq.gz [2023-01-22 15:10:01,658] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRR15101701_2_fastqc.html [2023-01-22 15:10:01,659] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRR15101705_2_fastqc.html [2023-01-22 15:10:01,659] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRR15101692_1_fastqc.html [2023-01-22 15:10:01,659] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRR15101699_1_fastqc.html [2023-01-22 15:10:01,660] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRR15101708_2_fastqc.html [2023-01-22 15:10:01,661] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRR15101691_1.fastq.gz [2023-01-22 15:10:01,661] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRR15101692_2_fastqc.html [2023-01-22 15:10:01,662] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRR15101701_1.fastq.gz [2023-01-22 15:10:01,662] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRR15101689_2_fastqc.html [2023-01-22 15:10:01,663] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRR15101710_1.fastq.gz [2023-01-22 15:10:01,663] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRR15101695_1.fastq.gz [2023-01-22 15:10:01,663] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRR15101694_1_fastqc.html [2023-01-22 15:10:01,664] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRR15101710_2.fastq.gz [2023-01-22 15:10:01,664] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRR15101713_2_fastqc.html [2023-01-22 15:10:01,664] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRR15101708_2.fastq.gz [2023-01-22 15:10:01,664] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRR15101712_1.fastq.gz [2023-01-22 15:10:01,665] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRR15101706_1_fastqc.html [2023-01-22 15:10:01,666] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRR15101705_1.fastq.gz [2023-01-22 15:10:01,666] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRR15101712_1_fastqc.html [2023-01-22 15:10:01,666] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRR15101719_1_fastqc.html [2023-01-22 15:10:01,667] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRR15101695_2.fastq.gz [2023-01-22 15:10:01,667] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRR15101710_2_fastqc.html [2023-01-22 15:10:01,667] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRR15101722_2_fastqc.html [2023-01-22 15:10:01,667] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRR15101695_2_fastqc.html [2023-01-22 15:10:01,668] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRR15101707_2_fastqc.html [2023-01-22 15:10:01,668] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRR15101700_1_fastqc.html [2023-01-22 15:10:01,668] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRR15101719_2_fastqc.html [2023-01-22 15:10:01,669] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: input_fastq_checksums.md5 [2023-01-22 15:10:01,669] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRR15101689_1.fastq.gz [2023-01-22 15:10:01,670] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRR15101696_1.fastq.gz [2023-01-22 15:10:01,670] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRR15101707_1_fastqc.html [2023-01-22 15:10:01,671] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRR15101689_1_fastqc.html [2023-01-22 15:10:01,671] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRR15101718_2.fastq.gz [2023-01-22 15:10:01,672] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRR15101711_1.fastq.gz [2023-01-22 15:10:01,672] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRR15101694_1.fastq.gz [2023-01-22 15:10:01,672] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRR15101713_1_fastqc.html [2023-01-22 15:10:01,673] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRR15101721_2.fastq.gz [2023-01-22 15:10:01,673] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRR15101719_1.fastq.gz [2023-01-22 15:10:01,674] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRR15101724_1_fastqc.html [2023-01-22 15:10:01,674] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRR15101704_1_fastqc.html [2023-01-22 15:10:01,674] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRR15101713_1.fastq.gz [2023-01-22 15:10:01,675] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRR15101693_1.fastq.gz [2023-01-22 15:10:01,676] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRR15101699_2.fastq.gz [2023-01-22 15:10:01,676] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRR15101700_1.fastq.gz [2023-01-22 15:10:01,677] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRR15101700_2_fastqc.html [2023-01-22 15:10:01,678] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRR15101693_2.fastq.gz [2023-01-22 15:10:01,678] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRR15101700_2.fastq.gz [2023-01-22 15:10:01,679] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRR15101718_1.fastq.gz [2023-01-22 15:10:01,679] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRR15101691_2_fastqc.html [2023-01-22 15:10:01,679] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRR15101691_1_fastqc.html [2023-01-22 15:10:01,679] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRR15101708_1_fastqc.html [2023-01-22 15:10:01,680] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRR15101697_1_fastqc.html [2023-01-22 15:10:02,543] multiqc.plots.bargraph [DEBUG ] Using matplotlib version 2.2.4 [2023-01-22 15:10:02,544] multiqc.plots.linegraph [DEBUG ] Using matplotlib version 2.2.4 [2023-01-22 15:10:02,546] multiqc [DEBUG ] No samples found: custom_content [2023-01-22 15:10:02,552] multiqc [DEBUG ] No samples found: conpair [2023-01-22 15:10:02,559] multiqc [DEBUG ] No samples found: peddy [2023-01-22 15:10:02,568] multiqc [DEBUG ] No samples found: methylQA [2023-01-22 15:10:02,573] multiqc [DEBUG ] No samples found: phantompeakqualtools [2023-01-22 15:10:02,592] multiqc [DEBUG ] No samples found: qualimap [2023-01-22 15:10:02,598] multiqc [DEBUG ] No samples found: preseq [2023-01-22 15:10:02,603] multiqc [DEBUG ] No samples found: quast [2023-01-22 15:10:02,608] multiqc [DEBUG ] No samples found: qorts [2023-01-22 15:10:02,615] multiqc [DEBUG ] No samples found: rna_seqc [2023-01-22 15:10:02,621] multiqc [DEBUG ] No samples found: rsem [2023-01-22 15:10:02,629] multiqc [DEBUG ] No samples found: rseqc [2023-01-22 15:10:02,634] multiqc [DEBUG ] No samples found: busco [2023-01-22 15:10:02,640] multiqc [DEBUG ] No samples found: goleft_indexcov [2023-01-22 15:10:02,646] multiqc [DEBUG ] No samples found: disambiguate [2023-01-22 15:10:02,653] multiqc [DEBUG ] No samples found: supernova [2023-01-22 15:10:02,692] multiqc [DEBUG ] No samples found: deeptools [2023-01-22 15:10:02,702] multiqc [DEBUG ] No samples found: sargasso [2023-01-22 15:10:02,711] multiqc [DEBUG ] No samples found: verifybamid [2023-01-22 15:10:02,719] multiqc [DEBUG ] No samples found: mirtrace [2023-01-22 15:10:02,727] multiqc [DEBUG ] No samples found: happy [2023-01-22 15:10:02,737] multiqc [DEBUG ] No samples found: homer [2023-01-22 15:10:02,745] multiqc [DEBUG ] No samples found: macs2 [2023-01-22 15:10:02,751] multiqc [DEBUG ] No samples found: theta2 [2023-01-22 15:10:02,779] multiqc [DEBUG ] No samples found: snpeff [2023-01-22 15:10:02,787] multiqc [DEBUG ] No samples found: gatk [2023-01-22 15:10:02,793] multiqc [DEBUG ] No samples found: htseq [2023-01-22 15:10:02,799] multiqc [DEBUG ] No samples found: bcftools [2023-01-22 15:10:02,804] multiqc [DEBUG ] No samples found: featureCounts [2023-01-22 15:10:02,810] multiqc [DEBUG ] No samples found: fgbio [2023-01-22 15:10:02,816] multiqc [DEBUG ] No samples found: dedup [2023-01-22 15:10:02,822] multiqc [DEBUG ] No samples found: damageprofiler [2023-01-22 15:10:02,889] multiqc [DEBUG ] No samples found: biobambam2 [2023-01-22 15:10:02,896] multiqc [DEBUG ] No samples found: mtnucratio [2023-01-22 15:10:02,900] multiqc [DEBUG ] No samples found: picard [2023-01-22 15:10:02,905] multiqc [DEBUG ] No samples found: prokka [2023-01-22 15:10:02,911] multiqc [DEBUG ] No samples found: samblaster [2023-01-22 15:10:02,918] multiqc [DEBUG ] No samples found: samtools [2023-01-22 15:10:02,924] multiqc [DEBUG ] No samples found: sexdeterrmine [2023-01-22 15:10:02,930] multiqc [DEBUG ] No samples found: bamtools [2023-01-22 15:10:02,936] multiqc [DEBUG ] No samples found: jellyfish [2023-01-22 15:10:02,947] multiqc [DEBUG ] No samples found: vcftools [2023-01-22 15:10:02,973] multiqc [DEBUG ] No samples found: longranger [2023-01-22 15:10:02,979] multiqc [DEBUG ] No samples found: stacks [2023-01-22 15:10:02,987] multiqc [DEBUG ] No samples found: bbmap [2023-01-22 15:10:02,993] multiqc [DEBUG ] No samples found: bismark [2023-01-22 15:10:03,000] multiqc [DEBUG ] No samples found: biscuit [2023-01-22 15:10:03,017] multiqc [DEBUG ] No samples found: hicexplorer [2023-01-22 15:10:03,046] multiqc [DEBUG ] No samples found: hicup [2023-01-22 15:10:03,051] multiqc [DEBUG ] No samples found: hicpro [2023-01-22 15:10:03,058] multiqc [DEBUG ] No samples found: salmon [2023-01-22 15:10:03,064] multiqc [DEBUG ] No samples found: kallisto [2023-01-22 15:10:03,070] multiqc [DEBUG ] No samples found: slamdunk [2023-01-22 15:10:03,075] multiqc [DEBUG ] No samples found: star [2023-01-22 15:10:03,081] multiqc [DEBUG ] No samples found: hisat2 [2023-01-22 15:10:03,086] multiqc [DEBUG ] No samples found: tophat [2023-01-22 15:10:03,108] multiqc [DEBUG ] No samples found: bowtie2 [2023-01-22 15:10:03,129] multiqc [DEBUG ] No samples found: bowtie1 [2023-01-22 15:10:03,135] multiqc [DEBUG ] No samples found: kat [2023-01-22 15:10:03,141] multiqc [DEBUG ] No samples found: leehom [2023-01-22 15:10:03,147] multiqc [DEBUG ] No samples found: adapterRemoval [2023-01-22 15:10:03,153] multiqc [DEBUG ] No samples found: clipandmerge [2023-01-22 15:10:03,157] multiqc [DEBUG ] No samples found: cutadapt [2023-01-22 15:10:03,162] multiqc [DEBUG ] No samples found: flexbar [2023-01-22 15:10:03,167] multiqc [DEBUG ] No samples found: trimmomatic [2023-01-22 15:10:03,174] multiqc [DEBUG ] No samples found: skewer [2023-01-22 15:10:03,180] multiqc [DEBUG ] No samples found: sortmerna [2023-01-22 15:10:03,186] multiqc [DEBUG ] No samples found: biobloomtools [2023-01-22 15:10:03,191] multiqc [DEBUG ] No samples found: fastq_screen [2023-01-22 15:10:03,197] multiqc [DEBUG ] No samples found: afterqc [2023-01-22 15:10:03,202] multiqc [DEBUG ] No samples found: fastp [2023-01-22 15:10:03,401] multiqc.modules.fastqc.fastqc [INFO ] Found 54 reports [2023-01-22 15:10:04,629] multiqc [DEBUG ] No samples found: minionqc [2023-01-22 15:10:04,634] multiqc [DEBUG ] No samples found: mosdepth [2023-01-22 15:10:04,640] multiqc [DEBUG ] No samples found: clusterflow [2023-01-22 15:10:04,644] multiqc [DEBUG ] No samples found: bcl2fastq [2023-01-22 15:10:04,648] multiqc [DEBUG ] No samples found: interop [2023-01-22 15:10:04,653] multiqc [DEBUG ] No samples found: flash [2023-01-22 15:10:04,657] multiqc [DEBUG ] No samples found: seqyclean [2023-01-22 15:10:04,726] multiqc [INFO ] Compressing plot data [2023-01-22 15:10:05,508] multiqc [INFO ] Report : multiqc_report.html [2023-01-22 15:10:05,508] multiqc [INFO ] Data : multiqc_data [2023-01-22 15:10:05,510] multiqc [DEBUG ] Moving data file from '/tmp/tmppwbqu3kb/multiqc_data/multiqc_qualimap_bamqc_genome_results.txt' to '/gscratch/scrubbed/samwhite/outputs/20230119-coral-fastqc-fastp-multiqc-PRJNA744403/data/P_meandrina/RNA-seq/multiqc_data' [2023-01-22 15:10:05,511] multiqc [DEBUG ] Moving data file from '/tmp/tmppwbqu3kb/multiqc_data/multiqc_fastqc.txt' to '/gscratch/scrubbed/samwhite/outputs/20230119-coral-fastqc-fastp-multiqc-PRJNA744403/data/P_meandrina/RNA-seq/multiqc_data' [2023-01-22 15:10:05,512] multiqc [DEBUG ] Moving data file from '/tmp/tmppwbqu3kb/multiqc_data/multiqc_general_stats.txt' to '/gscratch/scrubbed/samwhite/outputs/20230119-coral-fastqc-fastp-multiqc-PRJNA744403/data/P_meandrina/RNA-seq/multiqc_data' [2023-01-22 15:10:05,513] multiqc [DEBUG ] Moving data file from '/tmp/tmppwbqu3kb/multiqc_data/multiqc_sources.txt' to '/gscratch/scrubbed/samwhite/outputs/20230119-coral-fastqc-fastp-multiqc-PRJNA744403/data/P_meandrina/RNA-seq/multiqc_data' [2023-01-22 15:10:05,513] multiqc [DEBUG ] Moving data file from '/tmp/tmppwbqu3kb/multiqc_data/multiqc_data.json' to '/gscratch/scrubbed/samwhite/outputs/20230119-coral-fastqc-fastp-multiqc-PRJNA744403/data/P_meandrina/RNA-seq/multiqc_data' [2023-01-22 15:10:05,638] multiqc [INFO ] MultiQC complete