[2023-01-22 14:53:42,970] multiqc [DEBUG ] No MultiQC config found: /gscratch/srlab/programs/anaconda3/lib/python3.7/site-packages/multiqc_config.yaml
[2023-01-22 14:53:42,994] multiqc [DEBUG ] Loading config settings from: /usr/lusers/samwhite/.multiqc_config.yaml
[2023-01-22 14:53:42,995] multiqc [DEBUG ] New config 'star': {'fn': '*Log.final.out'}
[2023-01-22 14:53:42,995] multiqc [DEBUG ] New config 'star/genecounts': {'fn': '*ReadsPerGene.out.tab'}
[2023-01-22 14:53:42,995] multiqc [DEBUG ] Added to filename patterns: {'fastp': {'fn': '*report.json'}}
[2023-01-22 14:53:42,995] multiqc [DEBUG ] New config 'hisat2': {'contents': 'HISAT2 summary stats:', 'shared': True}
[2023-01-22 14:53:42,996] multiqc [DEBUG ] No MultiQC config found: multiqc_config.yaml
[2023-01-22 14:53:42,996] multiqc [DEBUG ] Command used: /gscratch/srlab/programs/anaconda3/bin/multiqc .
[2023-01-22 14:53:48,241] multiqc [DEBUG ] Could not connect to multiqc.info for version check: <urlopen error timed out>
[2023-01-22 14:53:48,241] multiqc [INFO ] This is MultiQC v1.8
[2023-01-22 14:53:48,242] multiqc [DEBUG ] Command : /gscratch/srlab/programs/anaconda3/bin/multiqc .
[2023-01-22 14:53:48,242] multiqc [DEBUG ] Working dir : /gscratch/scrubbed/samwhite/outputs/20230119-coral-fastqc-fastp-multiqc-PRJNA744403/data/P_meandrina/BS-seq/trimmed
[2023-01-22 14:53:48,242] multiqc [INFO ] Template : default
[2023-01-22 14:53:48,242] multiqc [DEBUG ] Running Python 3.7.3 (default, Mar 27 2019, 22:11:17) [GCC 7.3.0]
[2023-01-22 14:53:48,242] multiqc [INFO ] Searching : /gscratch/scrubbed/samwhite/outputs/20230119-coral-fastqc-fastp-multiqc-PRJNA744403/data/P_meandrina/BS-seq/trimmed
[2023-01-22 14:53:48,243] multiqc [DEBUG ] Analysing modules: custom_content, conpair, peddy, methylQA, phantompeakqualtools, qualimap, preseq, quast, qorts, rna_seqc, rsem, rseqc, busco, goleft_indexcov, disambiguate, supernova, deeptools, sargasso, verifybamid, mirtrace, happy, homer, macs2, theta2, snpeff, gatk, htseq, bcftools, featureCounts, fgbio, dedup, damageprofiler, biobambam2, mtnucratio, picard, prokka, samblaster, samtools, sexdeterrmine, bamtools, jellyfish, vcftools, longranger, stacks, bbmap, bismark, biscuit, hicexplorer, hicup, hicpro, salmon, kallisto, slamdunk, star, hisat2, tophat, bowtie2, bowtie1, kat, leehom, adapterRemoval, clipandmerge, cutadapt, flexbar, trimmomatic, skewer, sortmerna, biobloomtools, fastq_screen, afterqc, fastp, fastqc, minionqc, mosdepth, clusterflow, bcl2fastq, interop, flash, seqyclean
[2023-01-22 14:53:48,244] multiqc [DEBUG ] Using temporary directory for creating report: /tmp/tmpout7ufjy
[2023-01-22 14:53:48,851] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRA-SRR15101740_1.P_meandrina.fastp-trim.20230122_fastqc.html
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[2023-01-22 14:53:48,864] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRA-SRR15101725_1.P_meandrina.fastp-trim.20230122_fastqc.html
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[2023-01-22 14:53:48,866] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRA-SRR15101739_1.P_meandrina.fastp-trim.20230122.fq.gz
[2023-01-22 14:53:48,867] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRA-SRR15101714_1.P_meandrina.fastp-trim.20230122.fq.gz
[2023-01-22 14:53:48,867] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRA-SRR15101746_1.P_meandrina.fastp-trim.20230122.fq.gz
[2023-01-22 14:53:48,867] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRA-SRR15101714_2.P_meandrina.fastp-trim.20230122_fastqc.html
[2023-01-22 14:53:48,868] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRA-SRR15101725_2.P_meandrina.fastp-trim.20230122_fastqc.html
[2023-01-22 14:53:48,868] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRA-SRR15101729_2.P_meandrina.fastp-trim.20230122.fq.gz
[2023-01-22 14:53:48,869] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRA-SRR15101740.P_meandrina.fastp-trim.20230122.report.html
[2023-01-22 14:53:48,869] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRA-SRR15101737_2.P_meandrina.fastp-trim.20230122_fastqc.html
[2023-01-22 14:53:48,870] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRA-SRR15101709_1.P_meandrina.fastp-trim.20230122_fastqc.html
[2023-01-22 14:53:48,870] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRA-SRR15101731_2.P_meandrina.fastp-trim.20230122.fq.gz
[2023-01-22 14:53:48,870] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRA-SRR15101743_1.P_meandrina.fastp-trim.20230122.fq.gz
[2023-01-22 14:53:48,871] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRA-SRR15101747_2.P_meandrina.fastp-trim.20230122.fq.gz
[2023-01-22 14:53:48,871] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRA-SRR15101726_1.P_meandrina.fastp-trim.20230122.fq.gz
[2023-01-22 14:53:48,872] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRA-SRR15101709_2.P_meandrina.fastp-trim.20230122_fastqc.html
[2023-01-22 14:53:48,873] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRA-SRR15101698_2.P_meandrina.fastp-trim.20230122_fastqc.html
[2023-01-22 14:53:48,873] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRA-SRR15101735_1.P_meandrina.fastp-trim.20230122.fq.gz
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[2023-01-22 14:53:48,875] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRA-SRR15101736.P_meandrina.fastp-trim.20230122.report.html
[2023-01-22 14:53:48,875] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRA-SRR15101741_1.P_meandrina.fastp-trim.20230122.fq.gz
[2023-01-22 14:53:48,875] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRA-SRR15101747.P_meandrina.fastp-trim.20230122.report.html
[2023-01-22 14:53:48,875] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: trimmed_fastq_checksums.md5
[2023-01-22 14:53:48,875] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRA-SRR15101745_1.P_meandrina.fastp-trim.20230122_fastqc.html
[2023-01-22 14:53:48,875] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRA-SRR15101738_1.P_meandrina.fastp-trim.20230122.fq.gz
[2023-01-22 14:53:48,876] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRA-SRR15101746_1.P_meandrina.fastp-trim.20230122_fastqc.html
[2023-01-22 14:53:48,876] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRA-SRR15101736_2.P_meandrina.fastp-trim.20230122.fq.gz
[2023-01-22 14:53:48,876] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRA-SRR15101726_2.P_meandrina.fastp-trim.20230122.fq.gz
[2023-01-22 14:53:48,876] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRA-SRR15101687.P_meandrina.fastp-trim.20230122.report.html
[2023-01-22 14:53:48,876] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRA-SRR15101725.P_meandrina.fastp-trim.20230122.report.html
[2023-01-22 14:53:48,877] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRA-SRR15101687_1.P_meandrina.fastp-trim.20230122_fastqc.html
[2023-01-22 14:53:48,877] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRA-SRR15101747_1.P_meandrina.fastp-trim.20230122.fq.gz
[2023-01-22 14:53:48,878] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRA-SRR15101736_1.P_meandrina.fastp-trim.20230122.fq.gz
[2023-01-22 14:53:48,878] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRA-SRR15101698_2.P_meandrina.fastp-trim.20230122.fq.gz
[2023-01-22 14:53:48,879] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRA-SRR15101742.P_meandrina.fastp-trim.20230122.report.html
[2023-01-22 14:53:48,879] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRA-SRR15101745_2.P_meandrina.fastp-trim.20230122_fastqc.html
[2023-01-22 14:53:48,880] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRA-SRR15101735.P_meandrina.fastp-trim.20230122.report.html
[2023-01-22 14:53:48,880] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRA-SRR15101698_1.P_meandrina.fastp-trim.20230122_fastqc.html
[2023-01-22 14:53:48,881] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRA-SRR15101709_1.P_meandrina.fastp-trim.20230122.fq.gz
[2023-01-22 14:53:48,881] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRA-SRR15101750_1.P_meandrina.fastp-trim.20230122.fq.gz
[2023-01-22 14:53:48,881] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRA-SRR15101709.P_meandrina.fastp-trim.20230122.report.html
[2023-01-22 14:53:48,882] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRA-SRR15101742_1.P_meandrina.fastp-trim.20230122_fastqc.html
[2023-01-22 14:53:48,882] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRA-SRR15101741.P_meandrina.fastp-trim.20230122.report.html
[2023-01-22 14:53:48,882] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRA-SRR15101739_1.P_meandrina.fastp-trim.20230122_fastqc.html
[2023-01-22 14:53:48,882] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRA-SRR15101742_1.P_meandrina.fastp-trim.20230122.fq.gz
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[2023-01-22 14:53:48,883] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRA-SRR15101714.P_meandrina.fastp-trim.20230122.report.html
[2023-01-22 14:53:48,883] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRA-SRR15101743_2.P_meandrina.fastp-trim.20230122_fastqc.html
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[2023-01-22 14:53:48,885] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRA-SRR15101733_1.P_meandrina.fastp-trim.20230122_fastqc.html
[2023-01-22 14:53:48,886] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRA-SRR15101745.P_meandrina.fastp-trim.20230122.report.html
[2023-01-22 14:53:48,886] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRA-SRR15101750_2.P_meandrina.fastp-trim.20230122_fastqc.html
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[2023-01-22 14:53:48,888] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRA-SRR15101750.P_meandrina.fastp-trim.20230122.report.html
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[2023-01-22 14:53:48,897] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRA-SRR15101737_2.P_meandrina.fastp-trim.20230122.fq.gz
[2023-01-22 14:53:48,897] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRA-SRR15101737.P_meandrina.fastp-trim.20230122.report.html
[2023-01-22 14:53:48,897] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRA-SRR15101734_1.P_meandrina.fastp-trim.20230122_fastqc.html
[2023-01-22 14:53:48,897] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRA-SRR15101698_1.P_meandrina.fastp-trim.20230122.fq.gz
[2023-01-22 14:53:48,897] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRA-SRR15101735_2.P_meandrina.fastp-trim.20230122.fq.gz
[2023-01-22 14:53:48,898] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRA-SRR15101738_2.P_meandrina.fastp-trim.20230122_fastqc.html
[2023-01-22 14:53:48,899] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRA-SRR15101726_1.P_meandrina.fastp-trim.20230122_fastqc.html
[2023-01-22 14:53:48,899] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRA-SRR15101737_1.P_meandrina.fastp-trim.20230122_fastqc.html
[2023-01-22 14:53:48,900] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRA-SRR15101743_1.P_meandrina.fastp-trim.20230122_fastqc.html
[2023-01-22 14:53:48,900] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRA-SRR15101740_2.P_meandrina.fastp-trim.20230122_fastqc.html
[2023-01-22 14:53:48,901] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRA-SRR15101731_1.P_meandrina.fastp-trim.20230122_fastqc.html
[2023-01-22 14:53:48,901] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRA-SRR15101734.P_meandrina.fastp-trim.20230122.report.html
[2023-01-22 14:53:48,901] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRA-SRR15101729_1.P_meandrina.fastp-trim.20230122_fastqc.html
[2023-01-22 14:53:48,901] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRA-SRR15101730_2.P_meandrina.fastp-trim.20230122_fastqc.html
[2023-01-22 14:53:48,901] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRA-SRR15101725_1.P_meandrina.fastp-trim.20230122.fq.gz
[2023-01-22 14:53:48,902] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRA-SRR15101731_2.P_meandrina.fastp-trim.20230122_fastqc.html
[2023-01-22 14:53:48,903] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRA-SRR15101716_2.P_meandrina.fastp-trim.20230122_fastqc.html
[2023-01-22 14:53:48,903] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRA-SRR15101745_2.P_meandrina.fastp-trim.20230122.fq.gz
[2023-01-22 14:53:48,903] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRA-SRR15101717_1.P_meandrina.fastp-trim.20230122.fq.gz
[2023-01-22 14:53:48,903] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRA-SRR15101742_2.P_meandrina.fastp-trim.20230122_fastqc.html
[2023-01-22 14:53:48,904] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRA-SRR15101738_1.P_meandrina.fastp-trim.20230122_fastqc.html
[2023-01-22 14:53:48,904] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRA-SRR15101687_2.P_meandrina.fastp-trim.20230122.fq.gz
[2023-01-22 14:53:48,904] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRA-SRR15101736_2.P_meandrina.fastp-trim.20230122_fastqc.html
[2023-01-22 14:53:52,511] multiqc.plots.bargraph [DEBUG ] Using matplotlib version 2.2.4
[2023-01-22 14:53:52,512] multiqc.plots.linegraph [DEBUG ] Using matplotlib version 2.2.4
[2023-01-22 14:53:52,529] multiqc [DEBUG ] No samples found: custom_content
[2023-01-22 14:53:52,576] multiqc [DEBUG ] No samples found: conpair
[2023-01-22 14:53:52,630] multiqc [DEBUG ] No samples found: peddy
[2023-01-22 14:53:52,683] multiqc [DEBUG ] No samples found: methylQA
[2023-01-22 14:53:52,734] multiqc [DEBUG ] No samples found: phantompeakqualtools
[2023-01-22 14:53:52,866] multiqc [DEBUG ] No samples found: qualimap
[2023-01-22 14:53:52,912] multiqc [DEBUG ] No samples found: preseq
[2023-01-22 14:53:52,972] multiqc [DEBUG ] No samples found: quast
[2023-01-22 14:53:52,996] multiqc [DEBUG ] No samples found: qorts
[2023-01-22 14:53:53,039] multiqc [DEBUG ] No samples found: rna_seqc
[2023-01-22 14:53:53,070] multiqc [DEBUG ] No samples found: rsem
[2023-01-22 14:53:53,139] multiqc [DEBUG ] No samples found: rseqc
[2023-01-22 14:53:53,158] multiqc [DEBUG ] No samples found: busco
[2023-01-22 14:53:53,196] multiqc [DEBUG ] No samples found: goleft_indexcov
[2023-01-22 14:53:53,208] multiqc [DEBUG ] No samples found: disambiguate
[2023-01-22 14:53:53,246] multiqc [DEBUG ] No samples found: supernova
[2023-01-22 14:53:53,354] multiqc [DEBUG ] No samples found: deeptools
[2023-01-22 14:53:53,389] multiqc [DEBUG ] No samples found: sargasso
[2023-01-22 14:53:53,446] multiqc [DEBUG ] No samples found: verifybamid
[2023-01-22 14:53:53,468] multiqc [DEBUG ] No samples found: mirtrace
[2023-01-22 14:53:53,476] multiqc [DEBUG ] No samples found: happy
[2023-01-22 14:53:53,486] multiqc [DEBUG ] No samples found: homer
[2023-01-22 14:53:53,531] multiqc [DEBUG ] No samples found: macs2
[2023-01-22 14:53:53,536] multiqc [DEBUG ] No samples found: theta2
[2023-01-22 14:53:53,542] multiqc [DEBUG ] No samples found: snpeff
[2023-01-22 14:53:53,604] multiqc [DEBUG ] No samples found: gatk
[2023-01-22 14:53:53,614] multiqc [DEBUG ] No samples found: htseq
[2023-01-22 14:53:53,650] multiqc [DEBUG ] No samples found: bcftools
[2023-01-22 14:53:53,658] multiqc [DEBUG ] No samples found: featureCounts
[2023-01-22 14:53:53,669] multiqc [DEBUG ] No samples found: fgbio
[2023-01-22 14:53:53,677] multiqc [DEBUG ] No samples found: dedup
[2023-01-22 14:53:53,694] multiqc [DEBUG ] No samples found: damageprofiler
[2023-01-22 14:53:53,748] multiqc [DEBUG ] No samples found: biobambam2
[2023-01-22 14:53:53,761] multiqc [DEBUG ] No samples found: mtnucratio
[2023-01-22 14:53:53,765] multiqc [DEBUG ] No samples found: picard
[2023-01-22 14:53:53,773] multiqc [DEBUG ] No samples found: prokka
[2023-01-22 14:53:53,781] multiqc [DEBUG ] No samples found: samblaster
[2023-01-22 14:53:53,875] multiqc [DEBUG ] No samples found: samtools
[2023-01-22 14:53:53,906] multiqc [DEBUG ] No samples found: sexdeterrmine
[2023-01-22 14:53:53,934] multiqc [DEBUG ] No samples found: bamtools
[2023-01-22 14:53:53,943] multiqc [DEBUG ] No samples found: jellyfish
[2023-01-22 14:53:53,952] multiqc [DEBUG ] No samples found: vcftools
[2023-01-22 14:53:53,959] multiqc [DEBUG ] No samples found: longranger
[2023-01-22 14:53:53,993] multiqc [DEBUG ] No samples found: stacks
[2023-01-22 14:53:54,035] multiqc [DEBUG ] No samples found: bbmap
[2023-01-22 14:53:54,046] multiqc [DEBUG ] No samples found: bismark
[2023-01-22 14:53:54,080] multiqc [DEBUG ] No samples found: biscuit
[2023-01-22 14:53:54,087] multiqc [DEBUG ] No samples found: hicexplorer
[2023-01-22 14:53:54,095] multiqc [DEBUG ] No samples found: hicup
[2023-01-22 14:53:54,109] multiqc [DEBUG ] No samples found: hicpro
[2023-01-22 14:53:54,116] multiqc [DEBUG ] No samples found: salmon
[2023-01-22 14:53:54,123] multiqc [DEBUG ] No samples found: kallisto
[2023-01-22 14:53:54,155] multiqc [DEBUG ] No samples found: slamdunk
[2023-01-22 14:53:54,178] multiqc [DEBUG ] No samples found: star
[2023-01-22 14:53:54,216] multiqc [DEBUG ] No samples found: hisat2
[2023-01-22 14:53:54,227] multiqc [DEBUG ] No samples found: tophat
[2023-01-22 14:53:54,236] multiqc [DEBUG ] No samples found: bowtie2
[2023-01-22 14:53:54,245] multiqc [DEBUG ] No samples found: bowtie1
[2023-01-22 14:53:54,254] multiqc [DEBUG ] No samples found: kat
[2023-01-22 14:53:54,262] multiqc [DEBUG ] No samples found: leehom
[2023-01-22 14:53:54,284] multiqc [DEBUG ] No samples found: adapterRemoval
[2023-01-22 14:53:54,293] multiqc [DEBUG ] No samples found: clipandmerge
[2023-01-22 14:53:54,314] multiqc [DEBUG ] No samples found: cutadapt
[2023-01-22 14:53:54,322] multiqc [DEBUG ] No samples found: flexbar
[2023-01-22 14:53:54,330] multiqc [DEBUG ] No samples found: trimmomatic
[2023-01-22 14:53:54,347] multiqc [DEBUG ] No samples found: skewer
[2023-01-22 14:53:54,355] multiqc [DEBUG ] No samples found: sortmerna
[2023-01-22 14:53:54,362] multiqc [DEBUG ] No samples found: biobloomtools
[2023-01-22 14:53:54,382] multiqc [DEBUG ] No samples found: fastq_screen
[2023-01-22 14:53:54,417] multiqc [DEBUG ] No samples found: afterqc
[2023-01-22 14:53:54,466] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: SRA-SRR15101745.P_meandrina.fastp-trim.20230122.report.json
[2023-01-22 14:53:54,497] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: SRA-SRR15101746.P_meandrina.fastp-trim.20230122.report.json
[2023-01-22 14:53:54,503] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: SRA-SRR15101750.P_meandrina.fastp-trim.20230122.report.json
[2023-01-22 14:53:54,508] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: SRA-SRR15101714.P_meandrina.fastp-trim.20230122.report.json
[2023-01-22 14:53:54,514] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: SRA-SRR15101726.P_meandrina.fastp-trim.20230122.report.json
[2023-01-22 14:53:54,520] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: SRA-SRR15101734.P_meandrina.fastp-trim.20230122.report.json
[2023-01-22 14:53:54,554] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: SRA-SRR15101740.P_meandrina.fastp-trim.20230122.report.json
[2023-01-22 14:53:54,575] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: SRA-SRR15101716.P_meandrina.fastp-trim.20230122.report.json
[2023-01-22 14:53:54,600] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: SRA-SRR15101741.P_meandrina.fastp-trim.20230122.report.json
[2023-01-22 14:53:54,606] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: SRA-SRR15101725.P_meandrina.fastp-trim.20230122.report.json
[2023-01-22 14:53:54,612] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: SRA-SRR15101730.P_meandrina.fastp-trim.20230122.report.json
[2023-01-22 14:53:54,650] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: SRA-SRR15101698.P_meandrina.fastp-trim.20230122.report.json
[2023-01-22 14:53:54,672] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: SRA-SRR15101737.P_meandrina.fastp-trim.20230122.report.json
[2023-01-22 14:53:54,697] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: SRA-SRR15101709.P_meandrina.fastp-trim.20230122.report.json
[2023-01-22 14:53:54,705] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: SRA-SRR15101738.P_meandrina.fastp-trim.20230122.report.json
[2023-01-22 14:53:54,712] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: SRA-SRR15101748.P_meandrina.fastp-trim.20230122.report.json
[2023-01-22 14:53:54,719] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: SRA-SRR15101735.P_meandrina.fastp-trim.20230122.report.json
[2023-01-22 14:53:54,726] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: SRA-SRR15101687.P_meandrina.fastp-trim.20230122.report.json
[2023-01-22 14:53:54,733] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: SRA-SRR15101747.P_meandrina.fastp-trim.20230122.report.json
[2023-01-22 14:53:54,739] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: SRA-SRR15101733.P_meandrina.fastp-trim.20230122.report.json
[2023-01-22 14:53:54,753] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: SRA-SRR15101743.P_meandrina.fastp-trim.20230122.report.json
[2023-01-22 14:53:54,759] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: SRA-SRR15101717.P_meandrina.fastp-trim.20230122.report.json
[2023-01-22 14:53:54,781] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: SRA-SRR15101739.P_meandrina.fastp-trim.20230122.report.json
[2023-01-22 14:53:54,787] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: SRA-SRR15101731.P_meandrina.fastp-trim.20230122.report.json
[2023-01-22 14:53:54,825] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: SRA-SRR15101736.P_meandrina.fastp-trim.20230122.report.json
[2023-01-22 14:53:54,860] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: SRA-SRR15101742.P_meandrina.fastp-trim.20230122.report.json
[2023-01-22 14:53:54,867] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: SRA-SRR15101729.P_meandrina.fastp-trim.20230122.report.json
[2023-01-22 14:53:54,869] multiqc.modules.fastp.fastp [INFO ] Found 27 reports
[2023-01-22 14:53:55,812] multiqc.modules.fastqc.fastqc [INFO ] Found 54 reports
[2023-01-22 14:53:56,800] multiqc [DEBUG ] No samples found: minionqc
[2023-01-22 14:53:56,835] multiqc [DEBUG ] No samples found: mosdepth
[2023-01-22 14:53:56,857] multiqc [DEBUG ] No samples found: clusterflow
[2023-01-22 14:53:56,928] multiqc [DEBUG ] No samples found: bcl2fastq
[2023-01-22 14:53:56,956] multiqc [DEBUG ] No samples found: interop
[2023-01-22 14:53:56,980] multiqc [DEBUG ] No samples found: flash
[2023-01-22 14:53:57,015] multiqc [DEBUG ] No samples found: seqyclean
[2023-01-22 14:53:57,146] multiqc [INFO ] Compressing plot data
[2023-01-22 14:53:59,804] multiqc [INFO ] Report : multiqc_report.html
[2023-01-22 14:53:59,804] multiqc [INFO ] Data : multiqc_data
[2023-01-22 14:53:59,806] multiqc [DEBUG ] Moving data file from '/tmp/tmpout7ufjy/multiqc_data/multiqc_qualimap_bamqc_genome_results.txt' to '/gscratch/scrubbed/samwhite/outputs/20230119-coral-fastqc-fastp-multiqc-PRJNA744403/data/P_meandrina/BS-seq/trimmed/multiqc_data'
[2023-01-22 14:53:59,807] multiqc [DEBUG ] Moving data file from '/tmp/tmpout7ufjy/multiqc_data/multiqc_fastp.txt' to '/gscratch/scrubbed/samwhite/outputs/20230119-coral-fastqc-fastp-multiqc-PRJNA744403/data/P_meandrina/BS-seq/trimmed/multiqc_data'
[2023-01-22 14:53:59,808] multiqc [DEBUG ] Moving data file from '/tmp/tmpout7ufjy/multiqc_data/multiqc_fastqc.txt' to '/gscratch/scrubbed/samwhite/outputs/20230119-coral-fastqc-fastp-multiqc-PRJNA744403/data/P_meandrina/BS-seq/trimmed/multiqc_data'
[2023-01-22 14:53:59,809] multiqc [DEBUG ] Moving data file from '/tmp/tmpout7ufjy/multiqc_data/multiqc_general_stats.txt' to '/gscratch/scrubbed/samwhite/outputs/20230119-coral-fastqc-fastp-multiqc-PRJNA744403/data/P_meandrina/BS-seq/trimmed/multiqc_data'
[2023-01-22 14:53:59,810] multiqc [DEBUG ] Moving data file from '/tmp/tmpout7ufjy/multiqc_data/multiqc_sources.txt' to '/gscratch/scrubbed/samwhite/outputs/20230119-coral-fastqc-fastp-multiqc-PRJNA744403/data/P_meandrina/BS-seq/trimmed/multiqc_data'
[2023-01-22 14:53:59,811] multiqc [DEBUG ] Moving data file from '/tmp/tmpout7ufjy/multiqc_data/multiqc_data.json' to '/gscratch/scrubbed/samwhite/outputs/20230119-coral-fastqc-fastp-multiqc-PRJNA744403/data/P_meandrina/BS-seq/trimmed/multiqc_data'
[2023-01-22 14:54:00,429] multiqc [INFO ] MultiQC complete