[2023-01-22 12:03:59,275] multiqc [DEBUG ] No MultiQC config found: /gscratch/srlab/programs/anaconda3/lib/python3.7/site-packages/multiqc_config.yaml [2023-01-22 12:03:59,320] multiqc [DEBUG ] Loading config settings from: /usr/lusers/samwhite/.multiqc_config.yaml [2023-01-22 12:03:59,320] multiqc [DEBUG ] New config 'star': {'fn': '*Log.final.out'} [2023-01-22 12:03:59,320] multiqc [DEBUG ] New config 'star/genecounts': {'fn': '*ReadsPerGene.out.tab'} [2023-01-22 12:03:59,321] multiqc [DEBUG ] Added to filename patterns: {'fastp': {'fn': '*report.json'}} [2023-01-22 12:03:59,321] multiqc [DEBUG ] New config 'hisat2': {'contents': 'HISAT2 summary stats:', 'shared': True} [2023-01-22 12:03:59,321] multiqc [DEBUG ] No MultiQC config found: multiqc_config.yaml [2023-01-22 12:03:59,321] multiqc [DEBUG ] Command used: /gscratch/srlab/programs/anaconda3/bin/multiqc . [2023-01-22 12:04:04,480] multiqc [DEBUG ] Could not connect to multiqc.info for version check: [2023-01-22 12:04:04,480] multiqc [INFO ] This is MultiQC v1.8 [2023-01-22 12:04:04,483] multiqc [DEBUG ] Command : /gscratch/srlab/programs/anaconda3/bin/multiqc . [2023-01-22 12:04:04,483] multiqc [DEBUG ] Working dir : /gscratch/scrubbed/samwhite/outputs/20230119-coral-fastqc-fastp-multiqc-PRJNA744403/data/P_meandrina/BS-seq [2023-01-22 12:04:04,483] multiqc [INFO ] Template : default [2023-01-22 12:04:04,483] multiqc [DEBUG ] Running Python 3.7.3 (default, Mar 27 2019, 22:11:17) [GCC 7.3.0] [2023-01-22 12:04:04,483] multiqc [INFO ] Searching : /gscratch/scrubbed/samwhite/outputs/20230119-coral-fastqc-fastp-multiqc-PRJNA744403/data/P_meandrina/BS-seq [2023-01-22 12:04:04,484] multiqc [DEBUG ] Analysing modules: custom_content, conpair, peddy, methylQA, phantompeakqualtools, qualimap, preseq, quast, qorts, rna_seqc, rsem, rseqc, busco, goleft_indexcov, disambiguate, supernova, deeptools, sargasso, verifybamid, mirtrace, happy, homer, macs2, theta2, snpeff, gatk, htseq, bcftools, featureCounts, fgbio, dedup, damageprofiler, biobambam2, mtnucratio, picard, prokka, samblaster, samtools, sexdeterrmine, bamtools, jellyfish, vcftools, longranger, stacks, bbmap, bismark, biscuit, hicexplorer, hicup, hicpro, salmon, kallisto, slamdunk, star, hisat2, tophat, bowtie2, bowtie1, kat, leehom, adapterRemoval, clipandmerge, cutadapt, flexbar, trimmomatic, skewer, sortmerna, biobloomtools, fastq_screen, afterqc, fastp, fastqc, minionqc, mosdepth, clusterflow, bcl2fastq, interop, flash, seqyclean [2023-01-22 12:04:04,485] multiqc [DEBUG ] Using temporary directory for creating report: /tmp/tmpx7lwgg6v [2023-01-22 12:04:04,857] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRR15101717_2.fastq.gz [2023-01-22 12:04:04,857] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRR15101743_2.fastq.gz [2023-01-22 12:04:04,865] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRR15101709_2_fastqc.html [2023-01-22 12:04:04,865] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRR15101729_2_fastqc.html [2023-01-22 12:04:04,865] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRR15101750_2_fastqc.html [2023-01-22 12:04:04,865] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRR15101730_1_fastqc.html [2023-01-22 12:04:04,866] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRR15101733_2.fastq.gz [2023-01-22 12:04:04,866] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRR15101746_1.fastq.gz [2023-01-22 12:04:04,867] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRR15101736_2_fastqc.html [2023-01-22 12:04:04,867] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRR15101745_2.fastq.gz [2023-01-22 12:04:04,867] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRR15101747_1.fastq.gz [2023-01-22 12:04:04,867] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRR15101733_2_fastqc.html [2023-01-22 12:04:04,867] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRR15101729_2.fastq.gz [2023-01-22 12:04:04,869] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRR15101746_2.fastq.gz [2023-01-22 12:04:04,869] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRR15101742_1.fastq.gz [2023-01-22 12:04:04,869] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRR15101745_1_fastqc.html [2023-01-22 12:04:04,869] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRR15101714_2.fastq.gz [2023-01-22 12:04:04,869] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRR15101717_1_fastqc.html [2023-01-22 12:04:04,869] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRR15101740_2_fastqc.html [2023-01-22 12:04:04,870] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRR15101726_2_fastqc.html [2023-01-22 12:04:04,870] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRR15101709_1_fastqc.html [2023-01-22 12:04:04,870] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRR15101737_2.fastq.gz [2023-01-22 12:04:04,870] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRR15101733_1_fastqc.html [2023-01-22 12:04:04,870] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRR15101717_2_fastqc.html [2023-01-22 12:04:04,870] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRR15101717_1.fastq.gz [2023-01-22 12:04:04,871] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRR15101714_2_fastqc.html [2023-01-22 12:04:04,871] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRR15101738_2_fastqc.html [2023-01-22 12:04:04,871] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRR15101736_1_fastqc.html [2023-01-22 12:04:04,871] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRR15101726_1.fastq.gz [2023-01-22 12:04:04,871] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRR15101737_1.fastq.gz [2023-01-22 12:04:04,872] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRR15101746_2_fastqc.html [2023-01-22 12:04:04,872] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRR15101748_1_fastqc.html [2023-01-22 12:04:04,872] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRR15101714_1.fastq.gz [2023-01-22 12:04:04,873] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRR15101736_2.fastq.gz [2023-01-22 12:04:04,873] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRR15101739_2_fastqc.html [2023-01-22 12:04:04,873] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRR15101747_2.fastq.gz [2023-01-22 12:04:04,873] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRR15101734_2.fastq.gz [2023-01-22 12:04:04,873] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRR15101748_2_fastqc.html [2023-01-22 12:04:04,874] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRR15101740_1.fastq.gz [2023-01-22 12:04:04,874] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRR15101687_1.fastq.gz [2023-01-22 12:04:04,874] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRR15101725_2.fastq.gz [2023-01-22 12:04:04,875] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRR15101731_1_fastqc.html [2023-01-22 12:04:04,875] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRR15101738_1_fastqc.html [2023-01-22 12:04:04,875] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRR15101750_2.fastq.gz [2023-01-22 12:04:04,875] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRR15101698_2_fastqc.html [2023-01-22 12:04:04,875] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRR15101731_2_fastqc.html [2023-01-22 12:04:04,876] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRR15101698_2.fastq.gz [2023-01-22 12:04:04,876] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRR15101743_1_fastqc.html [2023-01-22 12:04:04,876] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRR15101734_1_fastqc.html [2023-01-22 12:04:04,876] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRR15101741_2.fastq.gz [2023-01-22 12:04:04,876] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRR15101731_2.fastq.gz [2023-01-22 12:04:04,876] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRR15101733_1.fastq.gz [2023-01-22 12:04:04,876] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRR15101748_1.fastq.gz [2023-01-22 12:04:04,876] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRR15101740_2.fastq.gz [2023-01-22 12:04:04,877] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRR15101735_1.fastq.gz [2023-01-22 12:04:04,877] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRR15101729_1.fastq.gz [2023-01-22 12:04:04,877] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRR15101714_1_fastqc.html [2023-01-22 12:04:04,878] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRR15101745_1.fastq.gz [2023-01-22 12:04:04,878] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRR15101730_1.fastq.gz [2023-01-22 12:04:04,878] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRR15101726_1_fastqc.html [2023-01-22 12:04:04,878] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRR15101730_2.fastq.gz [2023-01-22 12:04:04,879] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRR15101716_2_fastqc.html [2023-01-22 12:04:04,879] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRR15101731_1.fastq.gz [2023-01-22 12:04:04,879] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRR15101687_1_fastqc.html [2023-01-22 12:04:04,879] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRR15101750_1_fastqc.html [2023-01-22 12:04:04,879] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRR15101735_2_fastqc.html [2023-01-22 12:04:04,879] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRR15101737_2_fastqc.html [2023-01-22 12:04:04,879] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRR15101743_1.fastq.gz [2023-01-22 12:04:04,880] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRR15101709_1.fastq.gz [2023-01-22 12:04:04,880] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRR15101726_2.fastq.gz [2023-01-22 12:04:04,880] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRR15101739_2.fastq.gz [2023-01-22 12:04:04,881] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRR15101747_1_fastqc.html [2023-01-22 12:04:04,881] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRR15101698_1.fastq.gz [2023-01-22 12:04:04,881] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRR15101716_2.fastq.gz [2023-01-22 12:04:04,881] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRR15101741_1.fastq.gz [2023-01-22 12:04:04,881] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRR15101743_2_fastqc.html [2023-01-22 12:04:04,881] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRR15101739_1.fastq.gz [2023-01-22 12:04:04,882] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRR15101746_1_fastqc.html [2023-01-22 12:04:04,882] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRR15101735_2.fastq.gz [2023-01-22 12:04:04,882] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRR15101729_1_fastqc.html [2023-01-22 12:04:04,882] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRR15101687_2_fastqc.html [2023-01-22 12:04:04,882] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRR15101745_2_fastqc.html [2023-01-22 12:04:04,882] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRR15101734_1.fastq.gz [2023-01-22 12:04:04,882] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRR15101716_1.fastq.gz [2023-01-22 12:04:04,882] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRR15101735_1_fastqc.html [2023-01-22 12:04:04,883] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRR15101738_1.fastq.gz [2023-01-22 12:04:04,883] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRR15101725_1.fastq.gz [2023-01-22 12:04:04,883] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: input_fastq_checksums.md5 [2023-01-22 12:04:04,883] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRR15101725_2_fastqc.html [2023-01-22 12:04:04,883] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRR15101738_2.fastq.gz [2023-01-22 12:04:04,883] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRR15101740_1_fastqc.html [2023-01-22 12:04:04,883] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRR15101698_1_fastqc.html [2023-01-22 12:04:04,883] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRR15101736_1.fastq.gz [2023-01-22 12:04:04,884] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRR15101725_1_fastqc.html [2023-01-22 12:04:04,884] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRR15101748_2.fastq.gz [2023-01-22 12:04:04,884] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRR15101750_1.fastq.gz [2023-01-22 12:04:04,884] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRR15101742_2.fastq.gz [2023-01-22 12:04:04,884] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRR15101734_2_fastqc.html [2023-01-22 12:04:04,884] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRR15101709_2.fastq.gz [2023-01-22 12:04:04,886] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRR15101687_2.fastq.gz [2023-01-22 12:04:04,886] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRR15101741_2_fastqc.html [2023-01-22 12:04:04,886] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRR15101739_1_fastqc.html [2023-01-22 12:04:04,886] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRR15101741_1_fastqc.html [2023-01-22 12:04:04,887] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRR15101716_1_fastqc.html [2023-01-22 12:04:04,887] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRR15101730_2_fastqc.html [2023-01-22 12:04:04,887] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRR15101742_2_fastqc.html [2023-01-22 12:04:04,887] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRR15101737_1_fastqc.html [2023-01-22 12:04:04,887] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRR15101747_2_fastqc.html [2023-01-22 12:04:04,887] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRR15101742_1_fastqc.html [2023-01-22 12:04:06,346] multiqc.plots.bargraph [DEBUG ] Using matplotlib version 2.2.4 [2023-01-22 12:04:06,347] multiqc.plots.linegraph [DEBUG ] Using matplotlib version 2.2.4 [2023-01-22 12:04:06,379] multiqc [DEBUG ] No samples found: custom_content [2023-01-22 12:04:06,404] multiqc [DEBUG ] No samples found: conpair [2023-01-22 12:04:06,412] multiqc [DEBUG ] No samples found: peddy [2023-01-22 12:04:06,456] multiqc [DEBUG ] No samples found: methylQA [2023-01-22 12:04:06,464] multiqc [DEBUG ] No samples found: phantompeakqualtools [2023-01-22 12:04:06,515] multiqc [DEBUG ] No samples found: qualimap [2023-01-22 12:04:06,523] multiqc [DEBUG ] No samples found: preseq [2023-01-22 12:04:06,530] multiqc [DEBUG ] No samples found: quast [2023-01-22 12:04:06,564] multiqc [DEBUG ] No samples found: qorts [2023-01-22 12:04:06,596] multiqc [DEBUG ] No samples found: rna_seqc [2023-01-22 12:04:06,616] multiqc [DEBUG ] No samples found: rsem [2023-01-22 12:04:06,707] multiqc [DEBUG ] No samples found: rseqc [2023-01-22 12:04:06,722] multiqc [DEBUG ] No samples found: busco [2023-01-22 12:04:06,730] multiqc [DEBUG ] No samples found: goleft_indexcov [2023-01-22 12:04:06,775] multiqc [DEBUG ] No samples found: disambiguate [2023-01-22 12:04:06,787] multiqc [DEBUG ] No samples found: supernova [2023-01-22 12:04:06,813] multiqc [DEBUG ] No samples found: deeptools [2023-01-22 12:04:06,819] multiqc [DEBUG ] No samples found: sargasso [2023-01-22 12:04:06,863] multiqc [DEBUG ] No samples found: verifybamid [2023-01-22 12:04:06,871] multiqc [DEBUG ] No samples found: mirtrace [2023-01-22 12:04:06,919] multiqc [DEBUG ] No samples found: happy [2023-01-22 12:04:06,980] multiqc [DEBUG ] No samples found: homer [2023-01-22 12:04:06,989] multiqc [DEBUG ] No samples found: macs2 [2023-01-22 12:04:06,997] multiqc [DEBUG ] No samples found: theta2 [2023-01-22 12:04:07,022] multiqc [DEBUG ] No samples found: snpeff [2023-01-22 12:04:07,065] multiqc [DEBUG ] No samples found: gatk [2023-01-22 12:04:07,082] multiqc [DEBUG ] No samples found: htseq [2023-01-22 12:04:07,090] multiqc [DEBUG ] No samples found: bcftools [2023-01-22 12:04:07,095] multiqc [DEBUG ] No samples found: featureCounts [2023-01-22 12:04:07,120] multiqc [DEBUG ] No samples found: fgbio [2023-01-22 12:04:07,126] multiqc [DEBUG ] No samples found: dedup [2023-01-22 12:04:07,144] multiqc [DEBUG ] No samples found: damageprofiler [2023-01-22 12:04:07,272] multiqc [DEBUG ] No samples found: biobambam2 [2023-01-22 12:04:07,280] multiqc [DEBUG ] No samples found: mtnucratio [2023-01-22 12:04:07,287] multiqc [DEBUG ] No samples found: picard [2023-01-22 12:04:07,295] multiqc [DEBUG ] No samples found: prokka [2023-01-22 12:04:07,303] multiqc [DEBUG ] No samples found: samblaster [2023-01-22 12:04:07,323] multiqc [DEBUG ] No samples found: samtools [2023-01-22 12:04:07,339] multiqc [DEBUG ] No samples found: sexdeterrmine [2023-01-22 12:04:07,346] multiqc [DEBUG ] No samples found: bamtools [2023-01-22 12:04:07,352] multiqc [DEBUG ] No samples found: jellyfish [2023-01-22 12:04:07,382] multiqc [DEBUG ] No samples found: vcftools [2023-01-22 12:04:07,431] multiqc [DEBUG ] No samples found: longranger [2023-01-22 12:04:07,437] multiqc [DEBUG ] No samples found: stacks [2023-01-22 12:04:07,450] multiqc [DEBUG ] No samples found: bbmap [2023-01-22 12:04:07,455] multiqc [DEBUG ] No samples found: bismark [2023-01-22 12:04:07,462] multiqc [DEBUG ] No samples found: biscuit [2023-01-22 12:04:07,500] multiqc [DEBUG ] No samples found: hicexplorer [2023-01-22 12:04:07,509] multiqc [DEBUG ] No samples found: hicup [2023-01-22 12:04:07,518] multiqc [DEBUG ] No samples found: hicpro [2023-01-22 12:04:07,527] multiqc [DEBUG ] No samples found: salmon [2023-01-22 12:04:07,550] multiqc [DEBUG ] No samples found: kallisto [2023-01-22 12:04:07,558] multiqc [DEBUG ] No samples found: slamdunk [2023-01-22 12:04:07,565] multiqc [DEBUG ] No samples found: star [2023-01-22 12:04:07,572] multiqc [DEBUG ] No samples found: hisat2 [2023-01-22 12:04:07,589] multiqc [DEBUG ] No samples found: tophat [2023-01-22 12:04:07,622] multiqc [DEBUG ] No samples found: bowtie2 [2023-01-22 12:04:07,630] multiqc [DEBUG ] No samples found: bowtie1 [2023-01-22 12:04:07,641] multiqc [DEBUG ] No samples found: kat [2023-01-22 12:04:07,648] multiqc [DEBUG ] No samples found: leehom [2023-01-22 12:04:07,656] multiqc [DEBUG ] No samples found: adapterRemoval [2023-01-22 12:04:07,664] multiqc [DEBUG ] No samples found: clipandmerge [2023-01-22 12:04:07,670] multiqc [DEBUG ] No samples found: cutadapt [2023-01-22 12:04:07,676] multiqc [DEBUG ] No samples found: flexbar [2023-01-22 12:04:07,705] multiqc [DEBUG ] No samples found: trimmomatic [2023-01-22 12:04:07,711] multiqc [DEBUG ] No samples found: skewer [2023-01-22 12:04:07,716] multiqc [DEBUG ] No samples found: sortmerna [2023-01-22 12:04:07,722] multiqc [DEBUG ] No samples found: biobloomtools [2023-01-22 12:04:07,729] multiqc [DEBUG ] No samples found: fastq_screen [2023-01-22 12:04:07,734] multiqc [DEBUG ] No samples found: afterqc [2023-01-22 12:04:07,749] multiqc [DEBUG ] No samples found: fastp [2023-01-22 12:04:08,185] multiqc.modules.fastqc.fastqc [INFO ] Found 54 reports [2023-01-22 12:04:09,432] multiqc [DEBUG ] No samples found: minionqc [2023-01-22 12:04:09,436] multiqc [DEBUG ] No samples found: mosdepth [2023-01-22 12:04:09,440] multiqc [DEBUG ] No samples found: clusterflow [2023-01-22 12:04:09,444] multiqc [DEBUG ] No samples found: bcl2fastq [2023-01-22 12:04:09,448] multiqc [DEBUG ] No samples found: interop [2023-01-22 12:04:09,451] multiqc [DEBUG ] No samples found: flash [2023-01-22 12:04:09,455] multiqc [DEBUG ] No samples found: seqyclean [2023-01-22 12:04:09,524] multiqc [INFO ] Compressing plot data [2023-01-22 12:04:10,307] multiqc [INFO ] Report : multiqc_report.html [2023-01-22 12:04:10,307] multiqc [INFO ] Data : multiqc_data [2023-01-22 12:04:10,309] multiqc [DEBUG ] Moving data file from '/tmp/tmpx7lwgg6v/multiqc_data/multiqc_qualimap_bamqc_genome_results.txt' to '/gscratch/scrubbed/samwhite/outputs/20230119-coral-fastqc-fastp-multiqc-PRJNA744403/data/P_meandrina/BS-seq/multiqc_data' [2023-01-22 12:04:10,310] multiqc [DEBUG ] Moving data file from '/tmp/tmpx7lwgg6v/multiqc_data/multiqc_fastqc.txt' to '/gscratch/scrubbed/samwhite/outputs/20230119-coral-fastqc-fastp-multiqc-PRJNA744403/data/P_meandrina/BS-seq/multiqc_data' [2023-01-22 12:04:10,311] multiqc [DEBUG ] Moving data file from '/tmp/tmpx7lwgg6v/multiqc_data/multiqc_general_stats.txt' to '/gscratch/scrubbed/samwhite/outputs/20230119-coral-fastqc-fastp-multiqc-PRJNA744403/data/P_meandrina/BS-seq/multiqc_data' [2023-01-22 12:04:10,312] multiqc [DEBUG ] Moving data file from '/tmp/tmpx7lwgg6v/multiqc_data/multiqc_sources.txt' to '/gscratch/scrubbed/samwhite/outputs/20230119-coral-fastqc-fastp-multiqc-PRJNA744403/data/P_meandrina/BS-seq/multiqc_data' [2023-01-22 12:04:10,313] multiqc [DEBUG ] Moving data file from '/tmp/tmpx7lwgg6v/multiqc_data/multiqc_data.json' to '/gscratch/scrubbed/samwhite/outputs/20230119-coral-fastqc-fastp-multiqc-PRJNA744403/data/P_meandrina/BS-seq/multiqc_data' [2023-01-22 12:04:10,656] multiqc [INFO ] MultiQC complete