/volume2/web/Atumefaciens/20230119-coral-fastqc-fastp-multiqc-PRJNA744403/data/P_grandis/RNA-seq/trimmed

Raw P.grandis trimmed RNA-seq data from NCBI BioProject PRJNA744403 and fastp/FastQC/MultiQC results.

FastQs were trimmed using fastp. Paired end adatpers were removed, as well as 20bp from 5' end of all reads.

See notebook for more detailed description(s):

https://robertslab.github.io/sams-notebook/2023/01/13/SRA-Data-Coral-SRA-BioProject-PRJNA744403-Download-and-QC.html

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trimmed_fastq_checksums.md5: MD5 checksums for all FastQ files.

multiqc_data/: Output directory of MultiQC.

multiqc_report.html: HTML MultiQC report summarizing all FastQC data.

pgrandis.rna-seq.trimmed.download.list.txt: A list of URLs for all FastQ files and trimmed_fastq_checksums.md5. Use with wget to
                                       download these files easily.

*.fastqc.html: FastQC HTML reports for each individual FastQ.

*.fastqc.zip: Zip file of FastQC reports for each individual FastQ.

*fastp-trim*.fq.gz: gzip-ed trimmed FastQs.

*fastp-trim*.report.html: fastp trimming report in interactive HTML format.

*fastp-trim*.report.json: fastp trimming report in JSON format. Used by MultiQC to generate MultiQC report.