Sample	command
Geo_Pool_F_GGCTAC_L006_R1_001	/gscratch/srlab/programs/fastp-0.20.0/fastp --in1 Geo_Pool_F_GGCTAC_L006_R1_001.fastq.gz --in2 Geo_Pool_F_GGCTAC_L006_R2_001.fastq.gz --detect_adapter_for_pe --thread 40 --html Geo_Pool_F_GGCTAC_L006_R1_001.fastp-trim.20220908.report.html --json Geo_Pool_F_GGCTAC_L006_R1_001.fastp-trim.20220908.report.json --out1 Geo_Pool_F_GGCTAC_L006_R1_001.fastp-trim.20220908.fq.gz --out2 Geo_Pool_F_GGCTAC_L006_R2_001.fastp-trim.20220908.fq.gz 
Geo_Pool_M_CTTGTA_L006_R1_001	/gscratch/srlab/programs/fastp-0.20.0/fastp --in1 Geo_Pool_M_CTTGTA_L006_R1_001.fastq.gz --in2 Geo_Pool_M_CTTGTA_L006_R2_001.fastq.gz --detect_adapter_for_pe --thread 40 --html Geo_Pool_M_CTTGTA_L006_R1_001.fastp-trim.20220908.report.html --json Geo_Pool_M_CTTGTA_L006_R1_001.fastp-trim.20220908.report.json --out1 Geo_Pool_M_CTTGTA_L006_R1_001.fastp-trim.20220908.fq.gz --out2 Geo_Pool_M_CTTGTA_L006_R2_001.fastp-trim.20220908.fq.gz 
Geoduck-ctenidia-RNA-1_S3_L001_R1_001	/gscratch/srlab/programs/fastp-0.20.0/fastp --in1 Geoduck-ctenidia-RNA-1_S3_L001_R1_001.fastq.gz --in2 Geoduck-ctenidia-RNA-1_S3_L001_R2_001.fastq.gz --detect_adapter_for_pe --thread 40 --html Geoduck-ctenidia-RNA-1_S3_L001_R1_001.fastp-trim.20220908.report.html --json Geoduck-ctenidia-RNA-1_S3_L001_R1_001.fastp-trim.20220908.report.json --out1 Geoduck-ctenidia-RNA-1_S3_L001_R1_001.fastp-trim.20220908.fq.gz --out2 Geoduck-ctenidia-RNA-1_S3_L001_R2_001.fastp-trim.20220908.fq.gz 
Geoduck-ctenidia-RNA-2_S11_L002_R1_001	/gscratch/srlab/programs/fastp-0.20.0/fastp --in1 Geoduck-ctenidia-RNA-2_S11_L002_R1_001.fastq.gz --in2 Geoduck-ctenidia-RNA-2_S11_L002_R2_001.fastq.gz --detect_adapter_for_pe --thread 40 --html Geoduck-ctenidia-RNA-2_S11_L002_R1_001.fastp-trim.20220908.report.html --json Geoduck-ctenidia-RNA-2_S11_L002_R1_001.fastp-trim.20220908.report.json --out1 Geoduck-ctenidia-RNA-2_S11_L002_R1_001.fastp-trim.20220908.fq.gz --out2 Geoduck-ctenidia-RNA-2_S11_L002_R2_001.fastp-trim.20220908.fq.gz 
Geoduck-ctenidia-RNA-3_S19_L003_R1_001	/gscratch/srlab/programs/fastp-0.20.0/fastp --in1 Geoduck-ctenidia-RNA-3_S19_L003_R1_001.fastq.gz --in2 Geoduck-ctenidia-RNA-3_S19_L003_R2_001.fastq.gz --detect_adapter_for_pe --thread 40 --html Geoduck-ctenidia-RNA-3_S19_L003_R1_001.fastp-trim.20220908.report.html --json Geoduck-ctenidia-RNA-3_S19_L003_R1_001.fastp-trim.20220908.report.json --out1 Geoduck-ctenidia-RNA-3_S19_L003_R1_001.fastp-trim.20220908.fq.gz --out2 Geoduck-ctenidia-RNA-3_S19_L003_R2_001.fastp-trim.20220908.fq.gz 
Geoduck-ctenidia-RNA-4_S27_L004_R1_001	/gscratch/srlab/programs/fastp-0.20.0/fastp --in1 Geoduck-ctenidia-RNA-4_S27_L004_R1_001.fastq.gz --in2 Geoduck-ctenidia-RNA-4_S27_L004_R2_001.fastq.gz --detect_adapter_for_pe --thread 40 --html Geoduck-ctenidia-RNA-4_S27_L004_R1_001.fastp-trim.20220908.report.html --json Geoduck-ctenidia-RNA-4_S27_L004_R1_001.fastp-trim.20220908.report.json --out1 Geoduck-ctenidia-RNA-4_S27_L004_R1_001.fastp-trim.20220908.fq.gz --out2 Geoduck-ctenidia-RNA-4_S27_L004_R2_001.fastp-trim.20220908.fq.gz 
Geoduck-ctenidia-RNA-5_S35_L005_R1_001	/gscratch/srlab/programs/fastp-0.20.0/fastp --in1 Geoduck-ctenidia-RNA-5_S35_L005_R1_001.fastq.gz --in2 Geoduck-ctenidia-RNA-5_S35_L005_R2_001.fastq.gz --detect_adapter_for_pe --thread 40 --html Geoduck-ctenidia-RNA-5_S35_L005_R1_001.fastp-trim.20220908.report.html --json Geoduck-ctenidia-RNA-5_S35_L005_R1_001.fastp-trim.20220908.report.json --out1 Geoduck-ctenidia-RNA-5_S35_L005_R1_001.fastp-trim.20220908.fq.gz --out2 Geoduck-ctenidia-RNA-5_S35_L005_R2_001.fastp-trim.20220908.fq.gz 
Geoduck-ctenidia-RNA-6_S43_L006_R1_001	/gscratch/srlab/programs/fastp-0.20.0/fastp --in1 Geoduck-ctenidia-RNA-6_S43_L006_R1_001.fastq.gz --in2 Geoduck-ctenidia-RNA-6_S43_L006_R2_001.fastq.gz --detect_adapter_for_pe --thread 40 --html Geoduck-ctenidia-RNA-6_S43_L006_R1_001.fastp-trim.20220908.report.html --json Geoduck-ctenidia-RNA-6_S43_L006_R1_001.fastp-trim.20220908.report.json --out1 Geoduck-ctenidia-RNA-6_S43_L006_R1_001.fastp-trim.20220908.fq.gz --out2 Geoduck-ctenidia-RNA-6_S43_L006_R2_001.fastp-trim.20220908.fq.gz 
Geoduck-ctenidia-RNA-7_S51_L007_R1_001	/gscratch/srlab/programs/fastp-0.20.0/fastp --in1 Geoduck-ctenidia-RNA-7_S51_L007_R1_001.fastq.gz --in2 Geoduck-ctenidia-RNA-7_S51_L007_R2_001.fastq.gz --detect_adapter_for_pe --thread 40 --html Geoduck-ctenidia-RNA-7_S51_L007_R1_001.fastp-trim.20220908.report.html --json Geoduck-ctenidia-RNA-7_S51_L007_R1_001.fastp-trim.20220908.report.json --out1 Geoduck-ctenidia-RNA-7_S51_L007_R1_001.fastp-trim.20220908.fq.gz --out2 Geoduck-ctenidia-RNA-7_S51_L007_R2_001.fastp-trim.20220908.fq.gz 
Geoduck-ctenidia-RNA-8_S59_L008_R1_001	/gscratch/srlab/programs/fastp-0.20.0/fastp --in1 Geoduck-ctenidia-RNA-8_S59_L008_R1_001.fastq.gz --in2 Geoduck-ctenidia-RNA-8_S59_L008_R2_001.fastq.gz --detect_adapter_for_pe --thread 40 --html Geoduck-ctenidia-RNA-8_S59_L008_R1_001.fastp-trim.20220908.report.html --json Geoduck-ctenidia-RNA-8_S59_L008_R1_001.fastp-trim.20220908.report.json --out1 Geoduck-ctenidia-RNA-8_S59_L008_R1_001.fastp-trim.20220908.fq.gz --out2 Geoduck-ctenidia-RNA-8_S59_L008_R2_001.fastp-trim.20220908.fq.gz 
Geoduck-gonad-RNA-1_S1_L001_R1_001	/gscratch/srlab/programs/fastp-0.20.0/fastp --in1 Geoduck-gonad-RNA-1_S1_L001_R1_001.fastq.gz --in2 Geoduck-gonad-RNA-1_S1_L001_R2_001.fastq.gz --detect_adapter_for_pe --thread 40 --html Geoduck-gonad-RNA-1_S1_L001_R1_001.fastp-trim.20220908.report.html --json Geoduck-gonad-RNA-1_S1_L001_R1_001.fastp-trim.20220908.report.json --out1 Geoduck-gonad-RNA-1_S1_L001_R1_001.fastp-trim.20220908.fq.gz --out2 Geoduck-gonad-RNA-1_S1_L001_R2_001.fastp-trim.20220908.fq.gz 
Geoduck-gonad-RNA-2_S9_L002_R1_001	/gscratch/srlab/programs/fastp-0.20.0/fastp --in1 Geoduck-gonad-RNA-2_S9_L002_R1_001.fastq.gz --in2 Geoduck-gonad-RNA-2_S9_L002_R2_001.fastq.gz --detect_adapter_for_pe --thread 40 --html Geoduck-gonad-RNA-2_S9_L002_R1_001.fastp-trim.20220908.report.html --json Geoduck-gonad-RNA-2_S9_L002_R1_001.fastp-trim.20220908.report.json --out1 Geoduck-gonad-RNA-2_S9_L002_R1_001.fastp-trim.20220908.fq.gz --out2 Geoduck-gonad-RNA-2_S9_L002_R2_001.fastp-trim.20220908.fq.gz 
Geoduck-gonad-RNA-3_S17_L003_R1_001	/gscratch/srlab/programs/fastp-0.20.0/fastp --in1 Geoduck-gonad-RNA-3_S17_L003_R1_001.fastq.gz --in2 Geoduck-gonad-RNA-3_S17_L003_R2_001.fastq.gz --detect_adapter_for_pe --thread 40 --html Geoduck-gonad-RNA-3_S17_L003_R1_001.fastp-trim.20220908.report.html --json Geoduck-gonad-RNA-3_S17_L003_R1_001.fastp-trim.20220908.report.json --out1 Geoduck-gonad-RNA-3_S17_L003_R1_001.fastp-trim.20220908.fq.gz --out2 Geoduck-gonad-RNA-3_S17_L003_R2_001.fastp-trim.20220908.fq.gz 
Geoduck-gonad-RNA-4_S25_L004_R1_001	/gscratch/srlab/programs/fastp-0.20.0/fastp --in1 Geoduck-gonad-RNA-4_S25_L004_R1_001.fastq.gz --in2 Geoduck-gonad-RNA-4_S25_L004_R2_001.fastq.gz --detect_adapter_for_pe --thread 40 --html Geoduck-gonad-RNA-4_S25_L004_R1_001.fastp-trim.20220908.report.html --json Geoduck-gonad-RNA-4_S25_L004_R1_001.fastp-trim.20220908.report.json --out1 Geoduck-gonad-RNA-4_S25_L004_R1_001.fastp-trim.20220908.fq.gz --out2 Geoduck-gonad-RNA-4_S25_L004_R2_001.fastp-trim.20220908.fq.gz 
Geoduck-gonad-RNA-5_S33_L005_R1_001	/gscratch/srlab/programs/fastp-0.20.0/fastp --in1 Geoduck-gonad-RNA-5_S33_L005_R1_001.fastq.gz --in2 Geoduck-gonad-RNA-5_S33_L005_R2_001.fastq.gz --detect_adapter_for_pe --thread 40 --html Geoduck-gonad-RNA-5_S33_L005_R1_001.fastp-trim.20220908.report.html --json Geoduck-gonad-RNA-5_S33_L005_R1_001.fastp-trim.20220908.report.json --out1 Geoduck-gonad-RNA-5_S33_L005_R1_001.fastp-trim.20220908.fq.gz --out2 Geoduck-gonad-RNA-5_S33_L005_R2_001.fastp-trim.20220908.fq.gz 
Geoduck-gonad-RNA-6_S41_L006_R1_001	/gscratch/srlab/programs/fastp-0.20.0/fastp --in1 Geoduck-gonad-RNA-6_S41_L006_R1_001.fastq.gz --in2 Geoduck-gonad-RNA-6_S41_L006_R2_001.fastq.gz --detect_adapter_for_pe --thread 40 --html Geoduck-gonad-RNA-6_S41_L006_R1_001.fastp-trim.20220908.report.html --json Geoduck-gonad-RNA-6_S41_L006_R1_001.fastp-trim.20220908.report.json --out1 Geoduck-gonad-RNA-6_S41_L006_R1_001.fastp-trim.20220908.fq.gz --out2 Geoduck-gonad-RNA-6_S41_L006_R2_001.fastp-trim.20220908.fq.gz 
Geoduck-gonad-RNA-7_S49_L007_R1_001	/gscratch/srlab/programs/fastp-0.20.0/fastp --in1 Geoduck-gonad-RNA-7_S49_L007_R1_001.fastq.gz --in2 Geoduck-gonad-RNA-7_S49_L007_R2_001.fastq.gz --detect_adapter_for_pe --thread 40 --html Geoduck-gonad-RNA-7_S49_L007_R1_001.fastp-trim.20220908.report.html --json Geoduck-gonad-RNA-7_S49_L007_R1_001.fastp-trim.20220908.report.json --out1 Geoduck-gonad-RNA-7_S49_L007_R1_001.fastp-trim.20220908.fq.gz --out2 Geoduck-gonad-RNA-7_S49_L007_R2_001.fastp-trim.20220908.fq.gz 
Geoduck-gonad-RNA-8_S57_L008_R1_001	/gscratch/srlab/programs/fastp-0.20.0/fastp --in1 Geoduck-gonad-RNA-8_S57_L008_R1_001.fastq.gz --in2 Geoduck-gonad-RNA-8_S57_L008_R2_001.fastq.gz --detect_adapter_for_pe --thread 40 --html Geoduck-gonad-RNA-8_S57_L008_R1_001.fastp-trim.20220908.report.html --json Geoduck-gonad-RNA-8_S57_L008_R1_001.fastp-trim.20220908.report.json --out1 Geoduck-gonad-RNA-8_S57_L008_R1_001.fastp-trim.20220908.fq.gz --out2 Geoduck-gonad-RNA-8_S57_L008_R2_001.fastp-trim.20220908.fq.gz 
Geoduck-heart-RNA-1_S2_L001_R1_001	/gscratch/srlab/programs/fastp-0.20.0/fastp --in1 Geoduck-heart-RNA-1_S2_L001_R1_001.fastq.gz --in2 Geoduck-heart-RNA-1_S2_L001_R2_001.fastq.gz --detect_adapter_for_pe --thread 40 --html Geoduck-heart-RNA-1_S2_L001_R1_001.fastp-trim.20220908.report.html --json Geoduck-heart-RNA-1_S2_L001_R1_001.fastp-trim.20220908.report.json --out1 Geoduck-heart-RNA-1_S2_L001_R1_001.fastp-trim.20220908.fq.gz --out2 Geoduck-heart-RNA-1_S2_L001_R2_001.fastp-trim.20220908.fq.gz 
Geoduck-heart-RNA-2_S10_L002_R1_001	/gscratch/srlab/programs/fastp-0.20.0/fastp --in1 Geoduck-heart-RNA-2_S10_L002_R1_001.fastq.gz --in2 Geoduck-heart-RNA-2_S10_L002_R2_001.fastq.gz --detect_adapter_for_pe --thread 40 --html Geoduck-heart-RNA-2_S10_L002_R1_001.fastp-trim.20220908.report.html --json Geoduck-heart-RNA-2_S10_L002_R1_001.fastp-trim.20220908.report.json --out1 Geoduck-heart-RNA-2_S10_L002_R1_001.fastp-trim.20220908.fq.gz --out2 Geoduck-heart-RNA-2_S10_L002_R2_001.fastp-trim.20220908.fq.gz 
Geoduck-heart-RNA-3_S18_L003_R1_001	/gscratch/srlab/programs/fastp-0.20.0/fastp --in1 Geoduck-heart-RNA-3_S18_L003_R1_001.fastq.gz --in2 Geoduck-heart-RNA-3_S18_L003_R2_001.fastq.gz --detect_adapter_for_pe --thread 40 --html Geoduck-heart-RNA-3_S18_L003_R1_001.fastp-trim.20220908.report.html --json Geoduck-heart-RNA-3_S18_L003_R1_001.fastp-trim.20220908.report.json --out1 Geoduck-heart-RNA-3_S18_L003_R1_001.fastp-trim.20220908.fq.gz --out2 Geoduck-heart-RNA-3_S18_L003_R2_001.fastp-trim.20220908.fq.gz 
Geoduck-heart-RNA-4_S26_L004_R1_001	/gscratch/srlab/programs/fastp-0.20.0/fastp --in1 Geoduck-heart-RNA-4_S26_L004_R1_001.fastq.gz --in2 Geoduck-heart-RNA-4_S26_L004_R2_001.fastq.gz --detect_adapter_for_pe --thread 40 --html Geoduck-heart-RNA-4_S26_L004_R1_001.fastp-trim.20220908.report.html --json Geoduck-heart-RNA-4_S26_L004_R1_001.fastp-trim.20220908.report.json --out1 Geoduck-heart-RNA-4_S26_L004_R1_001.fastp-trim.20220908.fq.gz --out2 Geoduck-heart-RNA-4_S26_L004_R2_001.fastp-trim.20220908.fq.gz 
Geoduck-heart-RNA-5_S34_L005_R1_001	/gscratch/srlab/programs/fastp-0.20.0/fastp --in1 Geoduck-heart-RNA-5_S34_L005_R1_001.fastq.gz --in2 Geoduck-heart-RNA-5_S34_L005_R2_001.fastq.gz --detect_adapter_for_pe --thread 40 --html Geoduck-heart-RNA-5_S34_L005_R1_001.fastp-trim.20220908.report.html --json Geoduck-heart-RNA-5_S34_L005_R1_001.fastp-trim.20220908.report.json --out1 Geoduck-heart-RNA-5_S34_L005_R1_001.fastp-trim.20220908.fq.gz --out2 Geoduck-heart-RNA-5_S34_L005_R2_001.fastp-trim.20220908.fq.gz 
Geoduck-heart-RNA-6_S42_L006_R1_001	/gscratch/srlab/programs/fastp-0.20.0/fastp --in1 Geoduck-heart-RNA-6_S42_L006_R1_001.fastq.gz --in2 Geoduck-heart-RNA-6_S42_L006_R2_001.fastq.gz --detect_adapter_for_pe --thread 40 --html Geoduck-heart-RNA-6_S42_L006_R1_001.fastp-trim.20220908.report.html --json Geoduck-heart-RNA-6_S42_L006_R1_001.fastp-trim.20220908.report.json --out1 Geoduck-heart-RNA-6_S42_L006_R1_001.fastp-trim.20220908.fq.gz --out2 Geoduck-heart-RNA-6_S42_L006_R2_001.fastp-trim.20220908.fq.gz 
Geoduck-heart-RNA-7_S50_L007_R1_001	/gscratch/srlab/programs/fastp-0.20.0/fastp --in1 Geoduck-heart-RNA-7_S50_L007_R1_001.fastq.gz --in2 Geoduck-heart-RNA-7_S50_L007_R2_001.fastq.gz --detect_adapter_for_pe --thread 40 --html Geoduck-heart-RNA-7_S50_L007_R1_001.fastp-trim.20220908.report.html --json Geoduck-heart-RNA-7_S50_L007_R1_001.fastp-trim.20220908.report.json --out1 Geoduck-heart-RNA-7_S50_L007_R1_001.fastp-trim.20220908.fq.gz --out2 Geoduck-heart-RNA-7_S50_L007_R2_001.fastp-trim.20220908.fq.gz 
Geoduck-heart-RNA-8_S58_L008_R1_001	/gscratch/srlab/programs/fastp-0.20.0/fastp --in1 Geoduck-heart-RNA-8_S58_L008_R1_001.fastq.gz --in2 Geoduck-heart-RNA-8_S58_L008_R2_001.fastq.gz --detect_adapter_for_pe --thread 40 --html Geoduck-heart-RNA-8_S58_L008_R1_001.fastp-trim.20220908.report.html --json Geoduck-heart-RNA-8_S58_L008_R1_001.fastp-trim.20220908.report.json --out1 Geoduck-heart-RNA-8_S58_L008_R1_001.fastp-trim.20220908.fq.gz --out2 Geoduck-heart-RNA-8_S58_L008_R2_001.fastp-trim.20220908.fq.gz 
Geoduck-juvenile-OA-exposure-RNA-EPI-115-1_S4_L001_R1_001	/gscratch/srlab/programs/fastp-0.20.0/fastp --in1 Geoduck-juvenile-OA-exposure-RNA-EPI-115-1_S4_L001_R1_001.fastq.gz --in2 Geoduck-juvenile-OA-exposure-RNA-EPI-115-1_S4_L001_R2_001.fastq.gz --detect_adapter_for_pe --thread 40 --html Geoduck-juvenile-OA-exposure-RNA-EPI-115-1_S4_L001_R1_001.fastp-trim.20220908.report.html --json Geoduck-juvenile-OA-exposure-RNA-EPI-115-1_S4_L001_R1_001.fastp-trim.20220908.report.json --out1 Geoduck-juvenile-OA-exposure-RNA-EPI-115-1_S4_L001_R1_001.fastp-trim.20220908.fq.gz --out2 Geoduck-juvenile-OA-exposure-RNA-EPI-115-1_S4_L001_R2_001.fastp-trim.20220908.fq.gz 
Geoduck-juvenile-OA-exposure-RNA-EPI-115-2_S12_L002_R1_001	/gscratch/srlab/programs/fastp-0.20.0/fastp --in1 Geoduck-juvenile-OA-exposure-RNA-EPI-115-2_S12_L002_R1_001.fastq.gz --in2 Geoduck-juvenile-OA-exposure-RNA-EPI-115-2_S12_L002_R2_001.fastq.gz --detect_adapter_for_pe --thread 40 --html Geoduck-juvenile-OA-exposure-RNA-EPI-115-2_S12_L002_R1_001.fastp-trim.20220908.report.html --json Geoduck-juvenile-OA-exposure-RNA-EPI-115-2_S12_L002_R1_001.fastp-trim.20220908.report.json --out1 Geoduck-juvenile-OA-exposure-RNA-EPI-115-2_S12_L002_R1_001.fastp-trim.20220908.fq.gz --out2 Geoduck-juvenile-OA-exposure-RNA-EPI-115-2_S12_L002_R2_001.fastp-trim.20220908.fq.gz 
Geoduck-juvenile-OA-exposure-RNA-EPI-115-3_S20_L003_R1_001	/gscratch/srlab/programs/fastp-0.20.0/fastp --in1 Geoduck-juvenile-OA-exposure-RNA-EPI-115-3_S20_L003_R1_001.fastq.gz --in2 Geoduck-juvenile-OA-exposure-RNA-EPI-115-3_S20_L003_R2_001.fastq.gz --detect_adapter_for_pe --thread 40 --html Geoduck-juvenile-OA-exposure-RNA-EPI-115-3_S20_L003_R1_001.fastp-trim.20220908.report.html --json Geoduck-juvenile-OA-exposure-RNA-EPI-115-3_S20_L003_R1_001.fastp-trim.20220908.report.json --out1 Geoduck-juvenile-OA-exposure-RNA-EPI-115-3_S20_L003_R1_001.fastp-trim.20220908.fq.gz --out2 Geoduck-juvenile-OA-exposure-RNA-EPI-115-3_S20_L003_R2_001.fastp-trim.20220908.fq.gz 
Geoduck-juvenile-OA-exposure-RNA-EPI-115-4_S28_L004_R1_001	/gscratch/srlab/programs/fastp-0.20.0/fastp --in1 Geoduck-juvenile-OA-exposure-RNA-EPI-115-4_S28_L004_R1_001.fastq.gz --in2 Geoduck-juvenile-OA-exposure-RNA-EPI-115-4_S28_L004_R2_001.fastq.gz --detect_adapter_for_pe --thread 40 --html Geoduck-juvenile-OA-exposure-RNA-EPI-115-4_S28_L004_R1_001.fastp-trim.20220908.report.html --json Geoduck-juvenile-OA-exposure-RNA-EPI-115-4_S28_L004_R1_001.fastp-trim.20220908.report.json --out1 Geoduck-juvenile-OA-exposure-RNA-EPI-115-4_S28_L004_R1_001.fastp-trim.20220908.fq.gz --out2 Geoduck-juvenile-OA-exposure-RNA-EPI-115-4_S28_L004_R2_001.fastp-trim.20220908.fq.gz 
Geoduck-juvenile-OA-exposure-RNA-EPI-115-5_S36_L005_R1_001	/gscratch/srlab/programs/fastp-0.20.0/fastp --in1 Geoduck-juvenile-OA-exposure-RNA-EPI-115-5_S36_L005_R1_001.fastq.gz --in2 Geoduck-juvenile-OA-exposure-RNA-EPI-115-5_S36_L005_R2_001.fastq.gz --detect_adapter_for_pe --thread 40 --html Geoduck-juvenile-OA-exposure-RNA-EPI-115-5_S36_L005_R1_001.fastp-trim.20220908.report.html --json Geoduck-juvenile-OA-exposure-RNA-EPI-115-5_S36_L005_R1_001.fastp-trim.20220908.report.json --out1 Geoduck-juvenile-OA-exposure-RNA-EPI-115-5_S36_L005_R1_001.fastp-trim.20220908.fq.gz --out2 Geoduck-juvenile-OA-exposure-RNA-EPI-115-5_S36_L005_R2_001.fastp-trim.20220908.fq.gz 
Geoduck-juvenile-OA-exposure-RNA-EPI-115-6_S44_L006_R1_001	/gscratch/srlab/programs/fastp-0.20.0/fastp --in1 Geoduck-juvenile-OA-exposure-RNA-EPI-115-6_S44_L006_R1_001.fastq.gz --in2 Geoduck-juvenile-OA-exposure-RNA-EPI-115-6_S44_L006_R2_001.fastq.gz --detect_adapter_for_pe --thread 40 --html Geoduck-juvenile-OA-exposure-RNA-EPI-115-6_S44_L006_R1_001.fastp-trim.20220908.report.html --json Geoduck-juvenile-OA-exposure-RNA-EPI-115-6_S44_L006_R1_001.fastp-trim.20220908.report.json --out1 Geoduck-juvenile-OA-exposure-RNA-EPI-115-6_S44_L006_R1_001.fastp-trim.20220908.fq.gz --out2 Geoduck-juvenile-OA-exposure-RNA-EPI-115-6_S44_L006_R2_001.fastp-trim.20220908.fq.gz 
Geoduck-juvenile-OA-exposure-RNA-EPI-115-7_S52_L007_R1_001	/gscratch/srlab/programs/fastp-0.20.0/fastp --in1 Geoduck-juvenile-OA-exposure-RNA-EPI-115-7_S52_L007_R1_001.fastq.gz --in2 Geoduck-juvenile-OA-exposure-RNA-EPI-115-7_S52_L007_R2_001.fastq.gz --detect_adapter_for_pe --thread 40 --html Geoduck-juvenile-OA-exposure-RNA-EPI-115-7_S52_L007_R1_001.fastp-trim.20220908.report.html --json Geoduck-juvenile-OA-exposure-RNA-EPI-115-7_S52_L007_R1_001.fastp-trim.20220908.report.json --out1 Geoduck-juvenile-OA-exposure-RNA-EPI-115-7_S52_L007_R1_001.fastp-trim.20220908.fq.gz --out2 Geoduck-juvenile-OA-exposure-RNA-EPI-115-7_S52_L007_R2_001.fastp-trim.20220908.fq.gz 
Geoduck-juvenile-OA-exposure-RNA-EPI-115-8_S60_L008_R1_001	/gscratch/srlab/programs/fastp-0.20.0/fastp --in1 Geoduck-juvenile-OA-exposure-RNA-EPI-115-8_S60_L008_R1_001.fastq.gz --in2 Geoduck-juvenile-OA-exposure-RNA-EPI-115-8_S60_L008_R2_001.fastq.gz --detect_adapter_for_pe --thread 40 --html Geoduck-juvenile-OA-exposure-RNA-EPI-115-8_S60_L008_R1_001.fastp-trim.20220908.report.html --json Geoduck-juvenile-OA-exposure-RNA-EPI-115-8_S60_L008_R1_001.fastp-trim.20220908.report.json --out1 Geoduck-juvenile-OA-exposure-RNA-EPI-115-8_S60_L008_R1_001.fastp-trim.20220908.fq.gz --out2 Geoduck-juvenile-OA-exposure-RNA-EPI-115-8_S60_L008_R2_001.fastp-trim.20220908.fq.gz 
Geoduck-juvenile-OA-exposure-RNA-EPI-116-1_S5_L001_R1_001	/gscratch/srlab/programs/fastp-0.20.0/fastp --in1 Geoduck-juvenile-OA-exposure-RNA-EPI-116-1_S5_L001_R1_001.fastq.gz --in2 Geoduck-juvenile-OA-exposure-RNA-EPI-116-1_S5_L001_R2_001.fastq.gz --detect_adapter_for_pe --thread 40 --html Geoduck-juvenile-OA-exposure-RNA-EPI-116-1_S5_L001_R1_001.fastp-trim.20220908.report.html --json Geoduck-juvenile-OA-exposure-RNA-EPI-116-1_S5_L001_R1_001.fastp-trim.20220908.report.json --out1 Geoduck-juvenile-OA-exposure-RNA-EPI-116-1_S5_L001_R1_001.fastp-trim.20220908.fq.gz --out2 Geoduck-juvenile-OA-exposure-RNA-EPI-116-1_S5_L001_R2_001.fastp-trim.20220908.fq.gz 
Geoduck-juvenile-OA-exposure-RNA-EPI-116-2_S13_L002_R1_001	/gscratch/srlab/programs/fastp-0.20.0/fastp --in1 Geoduck-juvenile-OA-exposure-RNA-EPI-116-2_S13_L002_R1_001.fastq.gz --in2 Geoduck-juvenile-OA-exposure-RNA-EPI-116-2_S13_L002_R2_001.fastq.gz --detect_adapter_for_pe --thread 40 --html Geoduck-juvenile-OA-exposure-RNA-EPI-116-2_S13_L002_R1_001.fastp-trim.20220908.report.html --json Geoduck-juvenile-OA-exposure-RNA-EPI-116-2_S13_L002_R1_001.fastp-trim.20220908.report.json --out1 Geoduck-juvenile-OA-exposure-RNA-EPI-116-2_S13_L002_R1_001.fastp-trim.20220908.fq.gz --out2 Geoduck-juvenile-OA-exposure-RNA-EPI-116-2_S13_L002_R2_001.fastp-trim.20220908.fq.gz 
Geoduck-juvenile-OA-exposure-RNA-EPI-116-3_S21_L003_R1_001	/gscratch/srlab/programs/fastp-0.20.0/fastp --in1 Geoduck-juvenile-OA-exposure-RNA-EPI-116-3_S21_L003_R1_001.fastq.gz --in2 Geoduck-juvenile-OA-exposure-RNA-EPI-116-3_S21_L003_R2_001.fastq.gz --detect_adapter_for_pe --thread 40 --html Geoduck-juvenile-OA-exposure-RNA-EPI-116-3_S21_L003_R1_001.fastp-trim.20220908.report.html --json Geoduck-juvenile-OA-exposure-RNA-EPI-116-3_S21_L003_R1_001.fastp-trim.20220908.report.json --out1 Geoduck-juvenile-OA-exposure-RNA-EPI-116-3_S21_L003_R1_001.fastp-trim.20220908.fq.gz --out2 Geoduck-juvenile-OA-exposure-RNA-EPI-116-3_S21_L003_R2_001.fastp-trim.20220908.fq.gz 
Geoduck-juvenile-OA-exposure-RNA-EPI-116-4_S29_L004_R1_001	/gscratch/srlab/programs/fastp-0.20.0/fastp --in1 Geoduck-juvenile-OA-exposure-RNA-EPI-116-4_S29_L004_R1_001.fastq.gz --in2 Geoduck-juvenile-OA-exposure-RNA-EPI-116-4_S29_L004_R2_001.fastq.gz --detect_adapter_for_pe --thread 40 --html Geoduck-juvenile-OA-exposure-RNA-EPI-116-4_S29_L004_R1_001.fastp-trim.20220908.report.html --json Geoduck-juvenile-OA-exposure-RNA-EPI-116-4_S29_L004_R1_001.fastp-trim.20220908.report.json --out1 Geoduck-juvenile-OA-exposure-RNA-EPI-116-4_S29_L004_R1_001.fastp-trim.20220908.fq.gz --out2 Geoduck-juvenile-OA-exposure-RNA-EPI-116-4_S29_L004_R2_001.fastp-trim.20220908.fq.gz 
Geoduck-juvenile-OA-exposure-RNA-EPI-116-5_S37_L005_R1_001	/gscratch/srlab/programs/fastp-0.20.0/fastp --in1 Geoduck-juvenile-OA-exposure-RNA-EPI-116-5_S37_L005_R1_001.fastq.gz --in2 Geoduck-juvenile-OA-exposure-RNA-EPI-116-5_S37_L005_R2_001.fastq.gz --detect_adapter_for_pe --thread 40 --html Geoduck-juvenile-OA-exposure-RNA-EPI-116-5_S37_L005_R1_001.fastp-trim.20220908.report.html --json Geoduck-juvenile-OA-exposure-RNA-EPI-116-5_S37_L005_R1_001.fastp-trim.20220908.report.json --out1 Geoduck-juvenile-OA-exposure-RNA-EPI-116-5_S37_L005_R1_001.fastp-trim.20220908.fq.gz --out2 Geoduck-juvenile-OA-exposure-RNA-EPI-116-5_S37_L005_R2_001.fastp-trim.20220908.fq.gz 
Geoduck-juvenile-OA-exposure-RNA-EPI-116-6_S45_L006_R1_001	/gscratch/srlab/programs/fastp-0.20.0/fastp --in1 Geoduck-juvenile-OA-exposure-RNA-EPI-116-6_S45_L006_R1_001.fastq.gz --in2 Geoduck-juvenile-OA-exposure-RNA-EPI-116-6_S45_L006_R2_001.fastq.gz --detect_adapter_for_pe --thread 40 --html Geoduck-juvenile-OA-exposure-RNA-EPI-116-6_S45_L006_R1_001.fastp-trim.20220908.report.html --json Geoduck-juvenile-OA-exposure-RNA-EPI-116-6_S45_L006_R1_001.fastp-trim.20220908.report.json --out1 Geoduck-juvenile-OA-exposure-RNA-EPI-116-6_S45_L006_R1_001.fastp-trim.20220908.fq.gz --out2 Geoduck-juvenile-OA-exposure-RNA-EPI-116-6_S45_L006_R2_001.fastp-trim.20220908.fq.gz 
Geoduck-juvenile-OA-exposure-RNA-EPI-116-7_S53_L007_R1_001	/gscratch/srlab/programs/fastp-0.20.0/fastp --in1 Geoduck-juvenile-OA-exposure-RNA-EPI-116-7_S53_L007_R1_001.fastq.gz --in2 Geoduck-juvenile-OA-exposure-RNA-EPI-116-7_S53_L007_R2_001.fastq.gz --detect_adapter_for_pe --thread 40 --html Geoduck-juvenile-OA-exposure-RNA-EPI-116-7_S53_L007_R1_001.fastp-trim.20220908.report.html --json Geoduck-juvenile-OA-exposure-RNA-EPI-116-7_S53_L007_R1_001.fastp-trim.20220908.report.json --out1 Geoduck-juvenile-OA-exposure-RNA-EPI-116-7_S53_L007_R1_001.fastp-trim.20220908.fq.gz --out2 Geoduck-juvenile-OA-exposure-RNA-EPI-116-7_S53_L007_R2_001.fastp-trim.20220908.fq.gz 
Geoduck-juvenile-OA-exposure-RNA-EPI-116-8_S61_L008_R1_001	/gscratch/srlab/programs/fastp-0.20.0/fastp --in1 Geoduck-juvenile-OA-exposure-RNA-EPI-116-8_S61_L008_R1_001.fastq.gz --in2 Geoduck-juvenile-OA-exposure-RNA-EPI-116-8_S61_L008_R2_001.fastq.gz --detect_adapter_for_pe --thread 40 --html Geoduck-juvenile-OA-exposure-RNA-EPI-116-8_S61_L008_R1_001.fastp-trim.20220908.report.html --json Geoduck-juvenile-OA-exposure-RNA-EPI-116-8_S61_L008_R1_001.fastp-trim.20220908.report.json --out1 Geoduck-juvenile-OA-exposure-RNA-EPI-116-8_S61_L008_R1_001.fastp-trim.20220908.fq.gz --out2 Geoduck-juvenile-OA-exposure-RNA-EPI-116-8_S61_L008_R2_001.fastp-trim.20220908.fq.gz 
Geoduck-juvenile-ambient-exposure-RNA-EPI-123-1_S6_L001_R1_001	/gscratch/srlab/programs/fastp-0.20.0/fastp --in1 Geoduck-juvenile-ambient-exposure-RNA-EPI-123-1_S6_L001_R1_001.fastq.gz --in2 Geoduck-juvenile-ambient-exposure-RNA-EPI-123-1_S6_L001_R2_001.fastq.gz --detect_adapter_for_pe --thread 40 --html Geoduck-juvenile-ambient-exposure-RNA-EPI-123-1_S6_L001_R1_001.fastp-trim.20220908.report.html --json Geoduck-juvenile-ambient-exposure-RNA-EPI-123-1_S6_L001_R1_001.fastp-trim.20220908.report.json --out1 Geoduck-juvenile-ambient-exposure-RNA-EPI-123-1_S6_L001_R1_001.fastp-trim.20220908.fq.gz --out2 Geoduck-juvenile-ambient-exposure-RNA-EPI-123-1_S6_L001_R2_001.fastp-trim.20220908.fq.gz 
Geoduck-juvenile-ambient-exposure-RNA-EPI-123-2_S14_L002_R1_001	/gscratch/srlab/programs/fastp-0.20.0/fastp --in1 Geoduck-juvenile-ambient-exposure-RNA-EPI-123-2_S14_L002_R1_001.fastq.gz --in2 Geoduck-juvenile-ambient-exposure-RNA-EPI-123-2_S14_L002_R2_001.fastq.gz --detect_adapter_for_pe --thread 40 --html Geoduck-juvenile-ambient-exposure-RNA-EPI-123-2_S14_L002_R1_001.fastp-trim.20220908.report.html --json Geoduck-juvenile-ambient-exposure-RNA-EPI-123-2_S14_L002_R1_001.fastp-trim.20220908.report.json --out1 Geoduck-juvenile-ambient-exposure-RNA-EPI-123-2_S14_L002_R1_001.fastp-trim.20220908.fq.gz --out2 Geoduck-juvenile-ambient-exposure-RNA-EPI-123-2_S14_L002_R2_001.fastp-trim.20220908.fq.gz 
Geoduck-juvenile-ambient-exposure-RNA-EPI-123-3_S22_L003_R1_001	/gscratch/srlab/programs/fastp-0.20.0/fastp --in1 Geoduck-juvenile-ambient-exposure-RNA-EPI-123-3_S22_L003_R1_001.fastq.gz --in2 Geoduck-juvenile-ambient-exposure-RNA-EPI-123-3_S22_L003_R2_001.fastq.gz --detect_adapter_for_pe --thread 40 --html Geoduck-juvenile-ambient-exposure-RNA-EPI-123-3_S22_L003_R1_001.fastp-trim.20220908.report.html --json Geoduck-juvenile-ambient-exposure-RNA-EPI-123-3_S22_L003_R1_001.fastp-trim.20220908.report.json --out1 Geoduck-juvenile-ambient-exposure-RNA-EPI-123-3_S22_L003_R1_001.fastp-trim.20220908.fq.gz --out2 Geoduck-juvenile-ambient-exposure-RNA-EPI-123-3_S22_L003_R2_001.fastp-trim.20220908.fq.gz 
Geoduck-juvenile-ambient-exposure-RNA-EPI-123-4_S30_L004_R1_001	/gscratch/srlab/programs/fastp-0.20.0/fastp --in1 Geoduck-juvenile-ambient-exposure-RNA-EPI-123-4_S30_L004_R1_001.fastq.gz --in2 Geoduck-juvenile-ambient-exposure-RNA-EPI-123-4_S30_L004_R2_001.fastq.gz --detect_adapter_for_pe --thread 40 --html Geoduck-juvenile-ambient-exposure-RNA-EPI-123-4_S30_L004_R1_001.fastp-trim.20220908.report.html --json Geoduck-juvenile-ambient-exposure-RNA-EPI-123-4_S30_L004_R1_001.fastp-trim.20220908.report.json --out1 Geoduck-juvenile-ambient-exposure-RNA-EPI-123-4_S30_L004_R1_001.fastp-trim.20220908.fq.gz --out2 Geoduck-juvenile-ambient-exposure-RNA-EPI-123-4_S30_L004_R2_001.fastp-trim.20220908.fq.gz 
Geoduck-juvenile-ambient-exposure-RNA-EPI-123-5_S38_L005_R1_001	/gscratch/srlab/programs/fastp-0.20.0/fastp --in1 Geoduck-juvenile-ambient-exposure-RNA-EPI-123-5_S38_L005_R1_001.fastq.gz --in2 Geoduck-juvenile-ambient-exposure-RNA-EPI-123-5_S38_L005_R2_001.fastq.gz --detect_adapter_for_pe --thread 40 --html Geoduck-juvenile-ambient-exposure-RNA-EPI-123-5_S38_L005_R1_001.fastp-trim.20220908.report.html --json Geoduck-juvenile-ambient-exposure-RNA-EPI-123-5_S38_L005_R1_001.fastp-trim.20220908.report.json --out1 Geoduck-juvenile-ambient-exposure-RNA-EPI-123-5_S38_L005_R1_001.fastp-trim.20220908.fq.gz --out2 Geoduck-juvenile-ambient-exposure-RNA-EPI-123-5_S38_L005_R2_001.fastp-trim.20220908.fq.gz 
Geoduck-juvenile-ambient-exposure-RNA-EPI-123-6_S46_L006_R1_001	/gscratch/srlab/programs/fastp-0.20.0/fastp --in1 Geoduck-juvenile-ambient-exposure-RNA-EPI-123-6_S46_L006_R1_001.fastq.gz --in2 Geoduck-juvenile-ambient-exposure-RNA-EPI-123-6_S46_L006_R2_001.fastq.gz --detect_adapter_for_pe --thread 40 --html Geoduck-juvenile-ambient-exposure-RNA-EPI-123-6_S46_L006_R1_001.fastp-trim.20220908.report.html --json Geoduck-juvenile-ambient-exposure-RNA-EPI-123-6_S46_L006_R1_001.fastp-trim.20220908.report.json --out1 Geoduck-juvenile-ambient-exposure-RNA-EPI-123-6_S46_L006_R1_001.fastp-trim.20220908.fq.gz --out2 Geoduck-juvenile-ambient-exposure-RNA-EPI-123-6_S46_L006_R2_001.fastp-trim.20220908.fq.gz 
Geoduck-juvenile-ambient-exposure-RNA-EPI-123-7_S54_L007_R1_001	/gscratch/srlab/programs/fastp-0.20.0/fastp --in1 Geoduck-juvenile-ambient-exposure-RNA-EPI-123-7_S54_L007_R1_001.fastq.gz --in2 Geoduck-juvenile-ambient-exposure-RNA-EPI-123-7_S54_L007_R2_001.fastq.gz --detect_adapter_for_pe --thread 40 --html Geoduck-juvenile-ambient-exposure-RNA-EPI-123-7_S54_L007_R1_001.fastp-trim.20220908.report.html --json Geoduck-juvenile-ambient-exposure-RNA-EPI-123-7_S54_L007_R1_001.fastp-trim.20220908.report.json --out1 Geoduck-juvenile-ambient-exposure-RNA-EPI-123-7_S54_L007_R1_001.fastp-trim.20220908.fq.gz --out2 Geoduck-juvenile-ambient-exposure-RNA-EPI-123-7_S54_L007_R2_001.fastp-trim.20220908.fq.gz 
Geoduck-juvenile-ambient-exposure-RNA-EPI-123-8_S62_L008_R1_001	/gscratch/srlab/programs/fastp-0.20.0/fastp --in1 Geoduck-juvenile-ambient-exposure-RNA-EPI-123-8_S62_L008_R1_001.fastq.gz --in2 Geoduck-juvenile-ambient-exposure-RNA-EPI-123-8_S62_L008_R2_001.fastq.gz --detect_adapter_for_pe --thread 40 --html Geoduck-juvenile-ambient-exposure-RNA-EPI-123-8_S62_L008_R1_001.fastp-trim.20220908.report.html --json Geoduck-juvenile-ambient-exposure-RNA-EPI-123-8_S62_L008_R1_001.fastp-trim.20220908.report.json --out1 Geoduck-juvenile-ambient-exposure-RNA-EPI-123-8_S62_L008_R1_001.fastp-trim.20220908.fq.gz --out2 Geoduck-juvenile-ambient-exposure-RNA-EPI-123-8_S62_L008_R2_001.fastp-trim.20220908.fq.gz 
Geoduck-juvenile-ambient-exposure-RNA-EPI-124-1_S7_L001_R1_001	/gscratch/srlab/programs/fastp-0.20.0/fastp --in1 Geoduck-juvenile-ambient-exposure-RNA-EPI-124-1_S7_L001_R1_001.fastq.gz --in2 Geoduck-juvenile-ambient-exposure-RNA-EPI-124-1_S7_L001_R2_001.fastq.gz --detect_adapter_for_pe --thread 40 --html Geoduck-juvenile-ambient-exposure-RNA-EPI-124-1_S7_L001_R1_001.fastp-trim.20220908.report.html --json Geoduck-juvenile-ambient-exposure-RNA-EPI-124-1_S7_L001_R1_001.fastp-trim.20220908.report.json --out1 Geoduck-juvenile-ambient-exposure-RNA-EPI-124-1_S7_L001_R1_001.fastp-trim.20220908.fq.gz --out2 Geoduck-juvenile-ambient-exposure-RNA-EPI-124-1_S7_L001_R2_001.fastp-trim.20220908.fq.gz 
Geoduck-juvenile-ambient-exposure-RNA-EPI-124-2_S15_L002_R1_001	/gscratch/srlab/programs/fastp-0.20.0/fastp --in1 Geoduck-juvenile-ambient-exposure-RNA-EPI-124-2_S15_L002_R1_001.fastq.gz --in2 Geoduck-juvenile-ambient-exposure-RNA-EPI-124-2_S15_L002_R2_001.fastq.gz --detect_adapter_for_pe --thread 40 --html Geoduck-juvenile-ambient-exposure-RNA-EPI-124-2_S15_L002_R1_001.fastp-trim.20220908.report.html --json Geoduck-juvenile-ambient-exposure-RNA-EPI-124-2_S15_L002_R1_001.fastp-trim.20220908.report.json --out1 Geoduck-juvenile-ambient-exposure-RNA-EPI-124-2_S15_L002_R1_001.fastp-trim.20220908.fq.gz --out2 Geoduck-juvenile-ambient-exposure-RNA-EPI-124-2_S15_L002_R2_001.fastp-trim.20220908.fq.gz 
Geoduck-juvenile-ambient-exposure-RNA-EPI-124-3_S23_L003_R1_001	/gscratch/srlab/programs/fastp-0.20.0/fastp --in1 Geoduck-juvenile-ambient-exposure-RNA-EPI-124-3_S23_L003_R1_001.fastq.gz --in2 Geoduck-juvenile-ambient-exposure-RNA-EPI-124-3_S23_L003_R2_001.fastq.gz --detect_adapter_for_pe --thread 40 --html Geoduck-juvenile-ambient-exposure-RNA-EPI-124-3_S23_L003_R1_001.fastp-trim.20220908.report.html --json Geoduck-juvenile-ambient-exposure-RNA-EPI-124-3_S23_L003_R1_001.fastp-trim.20220908.report.json --out1 Geoduck-juvenile-ambient-exposure-RNA-EPI-124-3_S23_L003_R1_001.fastp-trim.20220908.fq.gz --out2 Geoduck-juvenile-ambient-exposure-RNA-EPI-124-3_S23_L003_R2_001.fastp-trim.20220908.fq.gz 
Geoduck-juvenile-ambient-exposure-RNA-EPI-124-4_S31_L004_R1_001	/gscratch/srlab/programs/fastp-0.20.0/fastp --in1 Geoduck-juvenile-ambient-exposure-RNA-EPI-124-4_S31_L004_R1_001.fastq.gz --in2 Geoduck-juvenile-ambient-exposure-RNA-EPI-124-4_S31_L004_R2_001.fastq.gz --detect_adapter_for_pe --thread 40 --html Geoduck-juvenile-ambient-exposure-RNA-EPI-124-4_S31_L004_R1_001.fastp-trim.20220908.report.html --json Geoduck-juvenile-ambient-exposure-RNA-EPI-124-4_S31_L004_R1_001.fastp-trim.20220908.report.json --out1 Geoduck-juvenile-ambient-exposure-RNA-EPI-124-4_S31_L004_R1_001.fastp-trim.20220908.fq.gz --out2 Geoduck-juvenile-ambient-exposure-RNA-EPI-124-4_S31_L004_R2_001.fastp-trim.20220908.fq.gz 
Geoduck-juvenile-ambient-exposure-RNA-EPI-124-5_S39_L005_R1_001	/gscratch/srlab/programs/fastp-0.20.0/fastp --in1 Geoduck-juvenile-ambient-exposure-RNA-EPI-124-5_S39_L005_R1_001.fastq.gz --in2 Geoduck-juvenile-ambient-exposure-RNA-EPI-124-5_S39_L005_R2_001.fastq.gz --detect_adapter_for_pe --thread 40 --html Geoduck-juvenile-ambient-exposure-RNA-EPI-124-5_S39_L005_R1_001.fastp-trim.20220908.report.html --json Geoduck-juvenile-ambient-exposure-RNA-EPI-124-5_S39_L005_R1_001.fastp-trim.20220908.report.json --out1 Geoduck-juvenile-ambient-exposure-RNA-EPI-124-5_S39_L005_R1_001.fastp-trim.20220908.fq.gz --out2 Geoduck-juvenile-ambient-exposure-RNA-EPI-124-5_S39_L005_R2_001.fastp-trim.20220908.fq.gz 
Geoduck-juvenile-ambient-exposure-RNA-EPI-124-6_S47_L006_R1_001	/gscratch/srlab/programs/fastp-0.20.0/fastp --in1 Geoduck-juvenile-ambient-exposure-RNA-EPI-124-6_S47_L006_R1_001.fastq.gz --in2 Geoduck-juvenile-ambient-exposure-RNA-EPI-124-6_S47_L006_R2_001.fastq.gz --detect_adapter_for_pe --thread 40 --html Geoduck-juvenile-ambient-exposure-RNA-EPI-124-6_S47_L006_R1_001.fastp-trim.20220908.report.html --json Geoduck-juvenile-ambient-exposure-RNA-EPI-124-6_S47_L006_R1_001.fastp-trim.20220908.report.json --out1 Geoduck-juvenile-ambient-exposure-RNA-EPI-124-6_S47_L006_R1_001.fastp-trim.20220908.fq.gz --out2 Geoduck-juvenile-ambient-exposure-RNA-EPI-124-6_S47_L006_R2_001.fastp-trim.20220908.fq.gz 
Geoduck-juvenile-ambient-exposure-RNA-EPI-124-7_S55_L007_R1_001	/gscratch/srlab/programs/fastp-0.20.0/fastp --in1 Geoduck-juvenile-ambient-exposure-RNA-EPI-124-7_S55_L007_R1_001.fastq.gz --in2 Geoduck-juvenile-ambient-exposure-RNA-EPI-124-7_S55_L007_R2_001.fastq.gz --detect_adapter_for_pe --thread 40 --html Geoduck-juvenile-ambient-exposure-RNA-EPI-124-7_S55_L007_R1_001.fastp-trim.20220908.report.html --json Geoduck-juvenile-ambient-exposure-RNA-EPI-124-7_S55_L007_R1_001.fastp-trim.20220908.report.json --out1 Geoduck-juvenile-ambient-exposure-RNA-EPI-124-7_S55_L007_R1_001.fastp-trim.20220908.fq.gz --out2 Geoduck-juvenile-ambient-exposure-RNA-EPI-124-7_S55_L007_R2_001.fastp-trim.20220908.fq.gz 
Geoduck-juvenile-ambient-exposure-RNA-EPI-124-8_S63_L008_R1_001	/gscratch/srlab/programs/fastp-0.20.0/fastp --in1 Geoduck-juvenile-ambient-exposure-RNA-EPI-124-8_S63_L008_R1_001.fastq.gz --in2 Geoduck-juvenile-ambient-exposure-RNA-EPI-124-8_S63_L008_R2_001.fastq.gz --detect_adapter_for_pe --thread 40 --html Geoduck-juvenile-ambient-exposure-RNA-EPI-124-8_S63_L008_R1_001.fastp-trim.20220908.report.html --json Geoduck-juvenile-ambient-exposure-RNA-EPI-124-8_S63_L008_R1_001.fastp-trim.20220908.report.json --out1 Geoduck-juvenile-ambient-exposure-RNA-EPI-124-8_S63_L008_R1_001.fastp-trim.20220908.fq.gz --out2 Geoduck-juvenile-ambient-exposure-RNA-EPI-124-8_S63_L008_R2_001.fastp-trim.20220908.fq.gz 
Geoduck-larvae-day5-RNA-EPI-99-1_S8_L001_R1_001	/gscratch/srlab/programs/fastp-0.20.0/fastp --in1 Geoduck-larvae-day5-RNA-EPI-99-1_S8_L001_R1_001.fastq.gz --in2 Geoduck-larvae-day5-RNA-EPI-99-1_S8_L001_R2_001.fastq.gz --detect_adapter_for_pe --thread 40 --html Geoduck-larvae-day5-RNA-EPI-99-1_S8_L001_R1_001.fastp-trim.20220908.report.html --json Geoduck-larvae-day5-RNA-EPI-99-1_S8_L001_R1_001.fastp-trim.20220908.report.json --out1 Geoduck-larvae-day5-RNA-EPI-99-1_S8_L001_R1_001.fastp-trim.20220908.fq.gz --out2 Geoduck-larvae-day5-RNA-EPI-99-1_S8_L001_R2_001.fastp-trim.20220908.fq.gz 
Geoduck-larvae-day5-RNA-EPI-99-2_S16_L002_R1_001	/gscratch/srlab/programs/fastp-0.20.0/fastp --in1 Geoduck-larvae-day5-RNA-EPI-99-2_S16_L002_R1_001.fastq.gz --in2 Geoduck-larvae-day5-RNA-EPI-99-2_S16_L002_R2_001.fastq.gz --detect_adapter_for_pe --thread 40 --html Geoduck-larvae-day5-RNA-EPI-99-2_S16_L002_R1_001.fastp-trim.20220908.report.html --json Geoduck-larvae-day5-RNA-EPI-99-2_S16_L002_R1_001.fastp-trim.20220908.report.json --out1 Geoduck-larvae-day5-RNA-EPI-99-2_S16_L002_R1_001.fastp-trim.20220908.fq.gz --out2 Geoduck-larvae-day5-RNA-EPI-99-2_S16_L002_R2_001.fastp-trim.20220908.fq.gz 
Geoduck-larvae-day5-RNA-EPI-99-3_S24_L003_R1_001	/gscratch/srlab/programs/fastp-0.20.0/fastp --in1 Geoduck-larvae-day5-RNA-EPI-99-3_S24_L003_R1_001.fastq.gz --in2 Geoduck-larvae-day5-RNA-EPI-99-3_S24_L003_R2_001.fastq.gz --detect_adapter_for_pe --thread 40 --html Geoduck-larvae-day5-RNA-EPI-99-3_S24_L003_R1_001.fastp-trim.20220908.report.html --json Geoduck-larvae-day5-RNA-EPI-99-3_S24_L003_R1_001.fastp-trim.20220908.report.json --out1 Geoduck-larvae-day5-RNA-EPI-99-3_S24_L003_R1_001.fastp-trim.20220908.fq.gz --out2 Geoduck-larvae-day5-RNA-EPI-99-3_S24_L003_R2_001.fastp-trim.20220908.fq.gz 
Geoduck-larvae-day5-RNA-EPI-99-4_S32_L004_R1_001	/gscratch/srlab/programs/fastp-0.20.0/fastp --in1 Geoduck-larvae-day5-RNA-EPI-99-4_S32_L004_R1_001.fastq.gz --in2 Geoduck-larvae-day5-RNA-EPI-99-4_S32_L004_R2_001.fastq.gz --detect_adapter_for_pe --thread 40 --html Geoduck-larvae-day5-RNA-EPI-99-4_S32_L004_R1_001.fastp-trim.20220908.report.html --json Geoduck-larvae-day5-RNA-EPI-99-4_S32_L004_R1_001.fastp-trim.20220908.report.json --out1 Geoduck-larvae-day5-RNA-EPI-99-4_S32_L004_R1_001.fastp-trim.20220908.fq.gz --out2 Geoduck-larvae-day5-RNA-EPI-99-4_S32_L004_R2_001.fastp-trim.20220908.fq.gz 
Geoduck-larvae-day5-RNA-EPI-99-5_S40_L005_R1_001	/gscratch/srlab/programs/fastp-0.20.0/fastp --in1 Geoduck-larvae-day5-RNA-EPI-99-5_S40_L005_R1_001.fastq.gz --in2 Geoduck-larvae-day5-RNA-EPI-99-5_S40_L005_R2_001.fastq.gz --detect_adapter_for_pe --thread 40 --html Geoduck-larvae-day5-RNA-EPI-99-5_S40_L005_R1_001.fastp-trim.20220908.report.html --json Geoduck-larvae-day5-RNA-EPI-99-5_S40_L005_R1_001.fastp-trim.20220908.report.json --out1 Geoduck-larvae-day5-RNA-EPI-99-5_S40_L005_R1_001.fastp-trim.20220908.fq.gz --out2 Geoduck-larvae-day5-RNA-EPI-99-5_S40_L005_R2_001.fastp-trim.20220908.fq.gz 
Geoduck-larvae-day5-RNA-EPI-99-6_S48_L006_R1_001	/gscratch/srlab/programs/fastp-0.20.0/fastp --in1 Geoduck-larvae-day5-RNA-EPI-99-6_S48_L006_R1_001.fastq.gz --in2 Geoduck-larvae-day5-RNA-EPI-99-6_S48_L006_R2_001.fastq.gz --detect_adapter_for_pe --thread 40 --html Geoduck-larvae-day5-RNA-EPI-99-6_S48_L006_R1_001.fastp-trim.20220908.report.html --json Geoduck-larvae-day5-RNA-EPI-99-6_S48_L006_R1_001.fastp-trim.20220908.report.json --out1 Geoduck-larvae-day5-RNA-EPI-99-6_S48_L006_R1_001.fastp-trim.20220908.fq.gz --out2 Geoduck-larvae-day5-RNA-EPI-99-6_S48_L006_R2_001.fastp-trim.20220908.fq.gz 
Geoduck-larvae-day5-RNA-EPI-99-7_S56_L007_R1_001	/gscratch/srlab/programs/fastp-0.20.0/fastp --in1 Geoduck-larvae-day5-RNA-EPI-99-7_S56_L007_R1_001.fastq.gz --in2 Geoduck-larvae-day5-RNA-EPI-99-7_S56_L007_R2_001.fastq.gz --detect_adapter_for_pe --thread 40 --html Geoduck-larvae-day5-RNA-EPI-99-7_S56_L007_R1_001.fastp-trim.20220908.report.html --json Geoduck-larvae-day5-RNA-EPI-99-7_S56_L007_R1_001.fastp-trim.20220908.report.json --out1 Geoduck-larvae-day5-RNA-EPI-99-7_S56_L007_R1_001.fastp-trim.20220908.fq.gz --out2 Geoduck-larvae-day5-RNA-EPI-99-7_S56_L007_R2_001.fastp-trim.20220908.fq.gz 
Geoduck-larvae-day5-RNA-EPI-99-8_S64_L008_R1_001	/gscratch/srlab/programs/fastp-0.20.0/fastp --in1 Geoduck-larvae-day5-RNA-EPI-99-8_S64_L008_R1_001.fastq.gz --in2 Geoduck-larvae-day5-RNA-EPI-99-8_S64_L008_R2_001.fastq.gz --detect_adapter_for_pe --thread 40 --html Geoduck-larvae-day5-RNA-EPI-99-8_S64_L008_R1_001.fastp-trim.20220908.report.html --json Geoduck-larvae-day5-RNA-EPI-99-8_S64_L008_R1_001.fastp-trim.20220908.report.json --out1 Geoduck-larvae-day5-RNA-EPI-99-8_S64_L008_R1_001.fastp-trim.20220908.fq.gz --out2 Geoduck-larvae-day5-RNA-EPI-99-8_S64_L008_R2_001.fastp-trim.20220908.fq.gz 
Trueseq-stranded-mRNA-libraries-GeoRNA1-A1-NR006_S1_L001_R1_001	/gscratch/srlab/programs/fastp-0.20.0/fastp --in1 Trueseq-stranded-mRNA-libraries-GeoRNA1-A1-NR006_S1_L001_R1_001.fastq.gz --in2 Trueseq-stranded-mRNA-libraries-GeoRNA1-A1-NR006_S1_L001_R2_001.fastq.gz --detect_adapter_for_pe --thread 40 --html Trueseq-stranded-mRNA-libraries-GeoRNA1-A1-NR006_S1_L001_R1_001.fastp-trim.20220908.report.html --json Trueseq-stranded-mRNA-libraries-GeoRNA1-A1-NR006_S1_L001_R1_001.fastp-trim.20220908.report.json --out1 Trueseq-stranded-mRNA-libraries-GeoRNA1-A1-NR006_S1_L001_R1_001.fastp-trim.20220908.fq.gz --out2 Trueseq-stranded-mRNA-libraries-GeoRNA1-A1-NR006_S1_L001_R2_001.fastp-trim.20220908.fq.gz 
Trueseq-stranded-mRNA-libraries-GeoRNA1-A1-NR006_S1_L002_R1_001	/gscratch/srlab/programs/fastp-0.20.0/fastp --in1 Trueseq-stranded-mRNA-libraries-GeoRNA1-A1-NR006_S1_L002_R1_001.fastq.gz --in2 Trueseq-stranded-mRNA-libraries-GeoRNA1-A1-NR006_S1_L002_R2_001.fastq.gz --detect_adapter_for_pe --thread 40 --html Trueseq-stranded-mRNA-libraries-GeoRNA1-A1-NR006_S1_L002_R1_001.fastp-trim.20220908.report.html --json Trueseq-stranded-mRNA-libraries-GeoRNA1-A1-NR006_S1_L002_R1_001.fastp-trim.20220908.report.json --out1 Trueseq-stranded-mRNA-libraries-GeoRNA1-A1-NR006_S1_L002_R1_001.fastp-trim.20220908.fq.gz --out2 Trueseq-stranded-mRNA-libraries-GeoRNA1-A1-NR006_S1_L002_R2_001.fastp-trim.20220908.fq.gz 
Trueseq-stranded-mRNA-libraries-GeoRNA3-C1-NR012_S2_L001_R1_001	/gscratch/srlab/programs/fastp-0.20.0/fastp --in1 Trueseq-stranded-mRNA-libraries-GeoRNA3-C1-NR012_S2_L001_R1_001.fastq.gz --in2 Trueseq-stranded-mRNA-libraries-GeoRNA3-C1-NR012_S2_L001_R2_001.fastq.gz --detect_adapter_for_pe --thread 40 --html Trueseq-stranded-mRNA-libraries-GeoRNA3-C1-NR012_S2_L001_R1_001.fastp-trim.20220908.report.html --json Trueseq-stranded-mRNA-libraries-GeoRNA3-C1-NR012_S2_L001_R1_001.fastp-trim.20220908.report.json --out1 Trueseq-stranded-mRNA-libraries-GeoRNA3-C1-NR012_S2_L001_R1_001.fastp-trim.20220908.fq.gz --out2 Trueseq-stranded-mRNA-libraries-GeoRNA3-C1-NR012_S2_L001_R2_001.fastp-trim.20220908.fq.gz 
Trueseq-stranded-mRNA-libraries-GeoRNA3-C1-NR012_S2_L002_R1_001	/gscratch/srlab/programs/fastp-0.20.0/fastp --in1 Trueseq-stranded-mRNA-libraries-GeoRNA3-C1-NR012_S2_L002_R1_001.fastq.gz --in2 Trueseq-stranded-mRNA-libraries-GeoRNA3-C1-NR012_S2_L002_R2_001.fastq.gz --detect_adapter_for_pe --thread 40 --html Trueseq-stranded-mRNA-libraries-GeoRNA3-C1-NR012_S2_L002_R1_001.fastp-trim.20220908.report.html --json Trueseq-stranded-mRNA-libraries-GeoRNA3-C1-NR012_S2_L002_R1_001.fastp-trim.20220908.report.json --out1 Trueseq-stranded-mRNA-libraries-GeoRNA3-C1-NR012_S2_L002_R1_001.fastp-trim.20220908.fq.gz --out2 Trueseq-stranded-mRNA-libraries-GeoRNA3-C1-NR012_S2_L002_R2_001.fastp-trim.20220908.fq.gz 
Trueseq-stranded-mRNA-libraries-GeoRNA5-E1-NR005_S3_L001_R1_001	/gscratch/srlab/programs/fastp-0.20.0/fastp --in1 Trueseq-stranded-mRNA-libraries-GeoRNA5-E1-NR005_S3_L001_R1_001.fastq.gz --in2 Trueseq-stranded-mRNA-libraries-GeoRNA5-E1-NR005_S3_L001_R2_001.fastq.gz --detect_adapter_for_pe --thread 40 --html Trueseq-stranded-mRNA-libraries-GeoRNA5-E1-NR005_S3_L001_R1_001.fastp-trim.20220908.report.html --json Trueseq-stranded-mRNA-libraries-GeoRNA5-E1-NR005_S3_L001_R1_001.fastp-trim.20220908.report.json --out1 Trueseq-stranded-mRNA-libraries-GeoRNA5-E1-NR005_S3_L001_R1_001.fastp-trim.20220908.fq.gz --out2 Trueseq-stranded-mRNA-libraries-GeoRNA5-E1-NR005_S3_L001_R2_001.fastp-trim.20220908.fq.gz 
Trueseq-stranded-mRNA-libraries-GeoRNA5-E1-NR005_S3_L002_R1_001	/gscratch/srlab/programs/fastp-0.20.0/fastp --in1 Trueseq-stranded-mRNA-libraries-GeoRNA5-E1-NR005_S3_L002_R1_001.fastq.gz --in2 Trueseq-stranded-mRNA-libraries-GeoRNA5-E1-NR005_S3_L002_R2_001.fastq.gz --detect_adapter_for_pe --thread 40 --html Trueseq-stranded-mRNA-libraries-GeoRNA5-E1-NR005_S3_L002_R1_001.fastp-trim.20220908.report.html --json Trueseq-stranded-mRNA-libraries-GeoRNA5-E1-NR005_S3_L002_R1_001.fastp-trim.20220908.report.json --out1 Trueseq-stranded-mRNA-libraries-GeoRNA5-E1-NR005_S3_L002_R1_001.fastp-trim.20220908.fq.gz --out2 Trueseq-stranded-mRNA-libraries-GeoRNA5-E1-NR005_S3_L002_R2_001.fastp-trim.20220908.fq.gz 
Trueseq-stranded-mRNA-libraries-GeoRNA7-G1-NR019_S4_L001_R1_001	/gscratch/srlab/programs/fastp-0.20.0/fastp --in1 Trueseq-stranded-mRNA-libraries-GeoRNA7-G1-NR019_S4_L001_R1_001.fastq.gz --in2 Trueseq-stranded-mRNA-libraries-GeoRNA7-G1-NR019_S4_L001_R2_001.fastq.gz --detect_adapter_for_pe --thread 40 --html Trueseq-stranded-mRNA-libraries-GeoRNA7-G1-NR019_S4_L001_R1_001.fastp-trim.20220908.report.html --json Trueseq-stranded-mRNA-libraries-GeoRNA7-G1-NR019_S4_L001_R1_001.fastp-trim.20220908.report.json --out1 Trueseq-stranded-mRNA-libraries-GeoRNA7-G1-NR019_S4_L001_R1_001.fastp-trim.20220908.fq.gz --out2 Trueseq-stranded-mRNA-libraries-GeoRNA7-G1-NR019_S4_L001_R2_001.fastp-trim.20220908.fq.gz 
Trueseq-stranded-mRNA-libraries-GeoRNA7-G1-NR019_S4_L002_R1_001	/gscratch/srlab/programs/fastp-0.20.0/fastp --in1 Trueseq-stranded-mRNA-libraries-GeoRNA7-G1-NR019_S4_L002_R1_001.fastq.gz --in2 Trueseq-stranded-mRNA-libraries-GeoRNA7-G1-NR019_S4_L002_R2_001.fastq.gz --detect_adapter_for_pe --thread 40 --html Trueseq-stranded-mRNA-libraries-GeoRNA7-G1-NR019_S4_L002_R1_001.fastp-trim.20220908.report.html --json Trueseq-stranded-mRNA-libraries-GeoRNA7-G1-NR019_S4_L002_R1_001.fastp-trim.20220908.report.json --out1 Trueseq-stranded-mRNA-libraries-GeoRNA7-G1-NR019_S4_L002_R1_001.fastp-trim.20220908.fq.gz --out2 Trueseq-stranded-mRNA-libraries-GeoRNA7-G1-NR019_S4_L002_R2_001.fastp-trim.20220908.fq.gz 
Trueseq-stranded-mRNA-libraries-GeoRNA8-H1-NR021_S5_L001_R1_001	/gscratch/srlab/programs/fastp-0.20.0/fastp --in1 Trueseq-stranded-mRNA-libraries-GeoRNA8-H1-NR021_S5_L001_R1_001.fastq.gz --in2 Trueseq-stranded-mRNA-libraries-GeoRNA8-H1-NR021_S5_L001_R2_001.fastq.gz --detect_adapter_for_pe --thread 40 --html Trueseq-stranded-mRNA-libraries-GeoRNA8-H1-NR021_S5_L001_R1_001.fastp-trim.20220908.report.html --json Trueseq-stranded-mRNA-libraries-GeoRNA8-H1-NR021_S5_L001_R1_001.fastp-trim.20220908.report.json --out1 Trueseq-stranded-mRNA-libraries-GeoRNA8-H1-NR021_S5_L001_R1_001.fastp-trim.20220908.fq.gz --out2 Trueseq-stranded-mRNA-libraries-GeoRNA8-H1-NR021_S5_L001_R2_001.fastp-trim.20220908.fq.gz 
Trueseq-stranded-mRNA-libraries-GeoRNA8-H1-NR021_S5_L002_R1_001	/gscratch/srlab/programs/fastp-0.20.0/fastp --in1 Trueseq-stranded-mRNA-libraries-GeoRNA8-H1-NR021_S5_L002_R1_001.fastq.gz --in2 Trueseq-stranded-mRNA-libraries-GeoRNA8-H1-NR021_S5_L002_R2_001.fastq.gz --detect_adapter_for_pe --thread 40 --html Trueseq-stranded-mRNA-libraries-GeoRNA8-H1-NR021_S5_L002_R1_001.fastp-trim.20220908.report.html --json Trueseq-stranded-mRNA-libraries-GeoRNA8-H1-NR021_S5_L002_R1_001.fastp-trim.20220908.report.json --out1 Trueseq-stranded-mRNA-libraries-GeoRNA8-H1-NR021_S5_L002_R1_001.fastp-trim.20220908.fq.gz --out2 Trueseq-stranded-mRNA-libraries-GeoRNA8-H1-NR021_S5_L002_R2_001.fastp-trim.20220908.fq.gz