FastQCFastQC Report
Thu 8 Sep 2022
Geoduck-larvae-day5-RNA-EPI-99-3_S24_L003_R1_001.fastp-trim.20220908.fq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameGeoduck-larvae-day5-RNA-EPI-99-3_S24_L003_R1_001.fastp-trim.20220908.fq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1213
Sequences flagged as poor quality0
Sequence length59-151
%GC62

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC28523.495465787304205No Hit
ACCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC443.6273701566364385No Hit
CCCCCCGCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC181.483924154987634No Hit
ACCCCCGCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC120.9892827699917559No Hit
TCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC60.49464138499587795No Hit
NCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC50.4122011541632316No Hit
TATTTGTCATGTTTTATATTGTACAAATAGATTTGACAGCAAAATTGAGC40.3297609233305853No Hit
AGCGACTGCATCGTACCTTAAACTTCACATTTTCCTTGTTCTTCTTTATT40.3297609233305853No Hit
GCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC40.3297609233305853No Hit
CCCGCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC30.24732069249793898No Hit
CGCAAATCTCAGAACACTGTCCATACACTACACCAACATGATTTCTCTTT30.24732069249793898No Hit
GTACTTAGCGGCATATTGAACAGTAAGTTAATAACACGTATAATTTGTTT20.16488046166529266No Hit
GTTTCTATCAGTAACACTATATAAATTTAGAAATAAATATAATTTAAATA20.16488046166529266No Hit
CCCCCCGCCCCCCCCCCCCACCCCCCCCCCCCCCCCCCCCCCCCCCCCCC20.16488046166529266No Hit
CGCAAACCCTCCTCAAATCCAAGCTACGATGTCAGGCCCAAAATATGGAA20.16488046166529266No Hit
TTTTTCAACTTGAGCCCAAATTTATTTCGTCGCTTATAGACCATCTAACA20.16488046166529266No Hit
AGCAATTTTAATATAAACAATAACAAAACAGTAAGTACACAGTCATATTA20.16488046166529266No Hit
TGGGGAGGGCGTCTTAGACCTGTTGCCACGGAGGACCCTGTAAAGTGTTA20.16488046166529266No Hit
ACCGCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC20.16488046166529266No Hit
TTTTTTTGGTTTCCAATATTTATTTGATATTTCATTTACTAGTATACAAA20.16488046166529266No Hit
ACGCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC20.16488046166529266No Hit
CCCCCGCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC20.16488046166529266No Hit
GTTGACTAGAAGATAATACAAATGTACTTTAAGATGTTTACTGTACAAGC20.16488046166529266No Hit
GGTAGTGTCAATAAGCTGGCAGTTTTGACTTGATAAGGTCAACAAAGCTA20.16488046166529266No Hit
CCGAACTCTGGTGGATGTCATTAGTCGTTTTGTGCAATGAAAGTGCATCA20.16488046166529266No Hit
TTTTTGCGCATACCGGATAAGGACATCTGTTGTTTTACCAGTGTGAGATA20.16488046166529266No Hit
CGTTGTCGACCATGAAGGCGCAGTCGGAGTGCTCAAGGGTGGTATGGGTG20.16488046166529266No Hit
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCACCCCCCCCCCCCC20.16488046166529266No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)