FastQCFastQC Report
Thu 8 Sep 2022
Geoduck-juvenile-ambient-exposure-RNA-EPI-124-1_S7_L001_R1_001.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameGeoduck-juvenile-ambient-exposure-RNA-EPI-124-1_S7_L001_R1_001.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences9398
Sequences flagged as poor quality0
Sequence length35-151
%GC38

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC740.7874015748031495No Hit
ACCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC350.3724196637582464No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA180.1915301127899553No Hit
TTCAACCCTTTTGCTAATTGGTCATATATAAAGCAATGAAATATGTTTAA150.15960842732496275No Hit
GCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC140.14896786550329857No Hit
GCGATGGCAGTTGTGTTGCTCAACATGCACACGGCTCTCTGGACCTTGGC140.14896786550329857No Hit
GCTTGTTCTTTTTTGGTGTGGTGTAATTCTTCTTCTTACGTTTCTTGGCA130.1383273036816344No Hit
TAACAAACACTTTCTAGAATTACCATCTGAGCTTGTTTTTGAGGTTGAAA130.1383273036816344No Hit
GATTAGTTATATATAGTTTTGTAAATACACGCTTTGAACTATAATGTGTT120.1276867418599702No Hit
GCGTTGACATCCTTGGGGACAACATCACCTCTGTACAACATACAACAGGC120.1276867418599702No Hit
TTTCAAACAAAAATACATTATTTTATTTAAATATGAAAACCATACACAAA120.1276867418599702No Hit
GCAATGGCGGCGTTGACATCCTTGGGGACAACATCACCTCTGTACAACAT120.1276867418599702No Hit
AACTTTACCAGTGTGTGATTATAGAACAGAACAGAATTTTGTACAATATA120.1276867418599702No Hit
GTCAACATTCACATATGACAGATTGACAACATTGAATCATCAAATGTTGA110.11704618003830602No Hit
GTGGCTTCGTTGTAGTACACATTTATTCTTTCCAACTGAAGATCTGAATC110.11704618003830602No Hit
CTCTGATAGCCTTCTTCAGGTTCTCAATGTTTCTCTCCATCTGTGTGATC110.11704618003830602No Hit
CTGCTACTCTCAAAAATTTCTTTCTACTCTACATAGCTATGGTACAACTG110.11704618003830602No Hit
CTGCTCTATTCTTCAGAATAACTGAAATAATATCCAAATCTGCTCAATTT110.11704618003830602No Hit
TTTTTTTATCAATCAAACAATTTTATTCATATAATTCCCCTATAACACGT100.10640561821664184No Hit
ACCCTTGTATGGCTTGTCAAGACGACCTTGTTTGATCATTTCATCTTGGT100.10640561821664184No Hit
TAAACATTTACTGTTCACTGGTACTTCCATCGGTATATTTGTGACAAGCG100.10640561821664184No Hit
GAGAGAACAGCACTTTCATGTAGTTACGTTCACATCAATGTCCATCCTTT100.10640561821664184No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)