FastQCFastQC Report
Thu 8 Sep 2022
Geoduck-juvenile-ambient-exposure-RNA-EPI-123-8_S62_L008_R1_001.fastp-trim.20220908.fq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameGeoduck-juvenile-ambient-exposure-RNA-EPI-123-8_S62_L008_R1_001.fastp-trim.20220908.fq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences435
Sequences flagged as poor quality0
Sequence length57-151
%GC42

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TTCATCTTCACCTCCAACTGGTCGTGGCACAGCTGCCTCCCGTTCAGCCA286.436781609195402No Hit
CGGAGCGCGCTGAACTTTCCCTAGGGTCAATACAAAGGAAGCATATCATG245.517241379310345No Hit
GCTGAATGCATATCCTAAAAACAATACAAATGTGGCTTGAAGTATGTTGG204.597701149425287No Hit
TTCCAAAAGGAAAATATACAGACCTTTTGGATCCCCTTAGGGTCCAGGGG204.597701149425287No Hit
CGCACACACACAGTTAATTTATTCAAACAATTTGTAAACTTTAATGACAG194.3678160919540225No Hit
CTCAATTTCAGGTGGCACAACTGTTTCGTTTTCCAAGTTTTGGAAACACA184.137931034482759No Hit
CAAATCAACTCTTTTATTGATGACCAACCAAATATTTCTCTTCTTAATGC173.9080459770114944No Hit
GTTTACAGTCCAAAGTTCCAAGATGCCGCAGGATGGTTCTGGGCAGGTTT163.67816091954023No Hit
TCTGGGCAGGTTTTATCAGTCCAAAGTTCCAAGATGCCGCAGGATGGTTC143.218390804597701No Hit
CCAAGACGCCATGCAAGGTAAACTTCCTTGAACTTGTCAAAACCGGACAA132.9885057471264367No Hit
GTTAAAAGGCTCTAACCATATGTTGTATATTCGTGGTAATACAGGTATAT132.9885057471264367No Hit
CAAAGCAATAATGTATAAATACAAATAAATGGTATGAAATAACAAAAAAT132.9885057471264367No Hit
GTTTTTATTCAGCATGTTATTTTTGAGATGTTTAGTATGTATTGTTTCAA122.7586206896551726No Hit
AAACAATCATATGCAACAGGAACTATCAATCTTTTCCGGGTTGACCACCG122.7586206896551726No Hit
TTTCATTTATTTTTTTCCTCTGTACAGACAATTAACTTATTTAGTTGCTA122.7586206896551726No Hit
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC122.7586206896551726No Hit
TGATAGTCCTAATGATATGACAGCTGCAACAAGTAGAATAATTAATGTGA102.2988505747126435No Hit
TTTTCACAACATGTTACACGAAGTACTAGTACTACACTCAGTTATGCTTT102.2988505747126435No Hit
CTTTACACTTCCTTCTCTTCGAACTACTTAATTATATTTCCTCGCCCAAA102.2988505747126435No Hit
GATCGGAAGAGCACACGTCTGAACTCCAGTCACATGTCAGAATCTCGTAT92.0689655172413794TruSeq Adapter, Index 15 (97% over 40bp)
TTTTGACAGAGCTGTATTACTTGTTTTAGCAGGTTTCGCCGCGTTAGACG81.839080459770115No Hit
GAAAGCGTCTTTTGGAATTATTGCAGATATGTATGTTGGAATCGAAACAT40.9195402298850575No Hit
TGTTGACAGAGCTGTATTACTTGTTTTAGCAGGTTTCGCCGCGTTAGACG30.6896551724137931No Hit
TTCCCAAAGGAAAATATACAGACCTTTTGGATCCCCTTAGGGTCCAGGGG30.6896551724137931No Hit
ATCGGAAGAGCACACGTCTGAACTCCAGTCACATGTCAGAATCTCGTATG30.6896551724137931TruSeq Adapter, Index 15 (97% over 39bp)
GCTTACAGTCCAAAGTTCCAAGATGCCGCAGGATGGTTCTGGGCAGGTTT20.45977011494252873No Hit
ACCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC20.45977011494252873No Hit
CGCACCCACACAGTTAATTTATTCAAACAATTTGTAAACTTTAATGACAG20.45977011494252873No Hit
CGGCGCGCGCTGAACTTTCCCTAGGGTCAATACAAAGGAAGCATATCATG20.45977011494252873No Hit
GCTGCATGCATATCCTAAAAACAATACAAATGTGGCTTGAAGTATGTTGG20.45977011494252873No Hit
TAATATTCTAATTTATTATGAGTAAAAGTTATCAATTACAAAAAAGTGAA10.22988505747126436No Hit
TTGGGCTTGTAACCAATCTTTTTGATGTAGGTGGAAACTTCTTTGTTGAT10.22988505747126436No Hit
CCGATACTCTCCATACCCGTGGGAAATTACGCTAGCTCTGTGTCGAACAA10.22988505747126436No Hit
TTGTCATGAAGGTGTTAAACAGGCATTTAACATAAGCTTCTTTAAAACAA10.22988505747126436No Hit
TTTTGCCAGAGCTGTATTACTTGTTTTAGCAGGTTTCGCCGCGTTAGACG10.22988505747126436No Hit
TTCGTCTGAAGGAACAACCTTCTGTGAGTCTGGCCTTGCCTCCGGTTGGC10.22988505747126436No Hit
CATTGAGCATAAGTTGGACACATTTACAGCTGTCTACAAAAAACTTACTG10.22988505747126436No Hit
CCCCCCCCCCCCCCCCCCCCCCCCCCACCCCCCCCCCCCCCCCCCCCCCC10.22988505747126436No Hit
TGATCGTCCTAATGATATGACAGCTGCAACAAGTAGAATAATTAATGTGA10.22988505747126436No Hit
ATCACAGTCTCCATGGTGACAGGTATATGAAGTGTCTCATTGTCACTCAT10.22988505747126436No Hit
GTCAGCAGCAATTGTGGTACCATGTTGGAACACAACCTGACTGTACACGG10.22988505747126436No Hit
CACACCACACTGACGAGTTCGATATAACCGATGTCAAAAAGGAAAAGCCG10.22988505747126436No Hit
GCTGAATGCATATCCTAAAAACAATACAAATGTGGCTTGATGTATGTTGG10.22988505747126436No Hit
GCTGAATGCATATCCTAAAAACAATACAAATGTGGCTTGAGGTATGTTGG10.22988505747126436No Hit
GTTAAGTGTTCAGATATTTCTATTTAATCACTAGTTATGTTTAGTTGATC10.22988505747126436No Hit
AGTATCTCATTTTTTTTCTTTCTAATTTTATACAGATCAAATTTTAAGAC10.22988505747126436No Hit
CCGCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCACCCC10.22988505747126436No Hit
TTTCATTTATTTTTTTCCTCTGTACAGACAATTAACTTATCTAGTTGCTA10.22988505747126436No Hit
GCCGGGCTGTTAGGATTTGGCTCGTCTAACAATGACTGAGAATGTAAAGT10.22988505747126436No Hit
CCTATCCATGCACAAGAACCCTATCCATACACAATGACCCTATCCATACA10.22988505747126436No Hit
ATGCAATTCTGTAATGGTTCCACAGCGACAACCTTGTTCGGGAATCCAGT10.22988505747126436No Hit
CAAAGCAATAATGTATAAATAAAAATAAATGGTATGAAATAACAAAAAAT10.22988505747126436No Hit
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCACCCCCC10.22988505747126436No Hit
CTCATTGTACTTATATGTCGTCACATTCTATCTAAGATTTATGGATCAGT10.22988505747126436No Hit
TACTTAATCACTTGTTGGGTTTAGTTCATCACTTTACCGCCGCTCGCATT10.22988505747126436No Hit
TATTAATATGGGTTAAAACAATAATTAAAGCAATATTTCAGAAAACATAT10.22988505747126436No Hit
AGTAGATATAGGGAGGCTTAAAGCCTTCATCAGGCATAGAGATGGTTTAT10.22988505747126436No Hit
GTTTAAAGCTTCTTATTGCCAGAAAAAAGGCTCAGGTTTCTGTATTTGAG10.22988505747126436No Hit
TTTTTTTTTGTTTTCTGCATCTTTTATTTAAATAGTTTTCTTAGAATCAT10.22988505747126436No Hit
GTCTACAGTCCAAAGTTCCAAGATGCCGCAGGATGGTTCTGGGCAGGACT10.22988505747126436No Hit
CCGGGTTGTCTGTTACCAATCTGTGAATATACTTATAATGTCCAAGAGCT10.22988505747126436No Hit
TTCATCGTCACCTCCAACTGGTCGTGGCACAGCTGCCTCCCGTTCAGCCA10.22988505747126436No Hit
CTCACTTTCAGGTGGCACAACTGTTTCGTTTTCCAAGTTTTGGAAACACA10.22988505747126436No Hit
ATACTTATCTTGTCCCAGTTTTTGTCCATAGAGTAGTCCATAGATTTGCT10.22988505747126436No Hit
GCCATTTCTTGCTCGAAGTCCAGGGCAACATAGCAGAGCTTCTCCTTGAT10.22988505747126436No Hit
CTTGAATCTGTCGAAGTCCGAGAGTGTTGCCCTCAATTCTTTGTTGGCGA10.22988505747126436No Hit
ATTTAATCAACGCCCCTTTAAAAGACGAGCAAACATTTACTACTACTACT10.22988505747126436No Hit
ATTCAGGTAGCATACAATTACAGCAGGTAAAGCTACAAAATAGGTCAACA10.22988505747126436No Hit
GATCGGAAGAGCACACGTCTGAACTTCACGCCAATATCTCGTATGCCGTC10.22988505747126436Illumina Multiplexing PCR Primer 2.01 (96% over 28bp)
GGTTTTATTCAGCATGTTATTTTTGAGATGTTTAGTATGTATTGTTTCAA10.22988505747126436No Hit
TTTTAAAGTATAAAAAAATAATTAACTACATAGACTATTAAGGCTTTGTA10.22988505747126436No Hit
GGGTACCAACAGCTGCACAGGGAGGTTGTTTCTCGGTATTGAACAAGCGCCGTGGTG10.22988505747126436No Hit
GTAGTTTCATAATAGCGTATTTGGTTTACAATAGATAAAATGTTATAAAG10.22988505747126436No Hit
CTCAATGTCAGGTGGCACAACTGTTTCGTTTTCCAAGTTTTGGAAACACA10.22988505747126436No Hit
ACCCGCCCCCCCCCCCCCCCCCCCACCCCCCCACCCCCCCCCCCCACCCC10.22988505747126436No Hit
TTATGGCAATCTGTATGAGAAATCTCATACATGTAAGCAGACAGTACTTC10.22988505747126436No Hit
GTGATTTAACACAAGCAAACAGCTCCTAAAGGTGTTTATTCTGTTAGCAA10.22988505747126436No Hit
GTGAGATGAGGTTTACGAAGACGTGTGTCAGTCGTTTTCGTGAAAATCTG10.22988505747126436No Hit
TTCCACAAGGAAAATATACAGACCTTTTGGATCCCCTTAGGGTCCAGGGG10.22988505747126436No Hit
ACTTAGCATTGTCTCCTCTGCCACTAGTCAGCAATTTACGGTCAGACTGA10.22988505747126436No Hit
CGTGTGAGTAGACATAGAATTGACGTTAATGTTTAATGACAGTAGTATGC10.22988505747126436No Hit
TGTAATTCTTTTATCATTTTAAATTGTGAATTCTCGGGTGTTGCCATTTG10.22988505747126436No Hit
GGACAGTGACGTCAACATATATTGTAGACATTAACGTTATATTATGTTTA10.22988505747126436No Hit
CTTTACCCTTCCTTCTCTTCGAACTACTTAATTATATTTCCTCGCCCAAA10.22988505747126436No Hit
CGCAAAGCTCAGAACACTGCCCATACACTACACCAACATGATTTCTCTTT10.22988505747126436No Hit
NAACCCTCATATGCAACAGGAACTATCAATCTTTTCCGGGTTGACCACCG10.22988505747126436No Hit
CCCACTAATTTTCATGCCGCCTGGGCCCTTTTTATTTTCGCTAAAAAAAT10.22988505747126436No Hit
TTCATTTATTTTTTTCCTCTGTACAGACAATTAACTTATTTAGTTGCTAC10.22988505747126436No Hit
TAATAACCATCCTTATCGTTAGCATTGAGACACGTTCTCTCGCAAAAACT10.22988505747126436No Hit
CAGATACCATCGCAATATAATTGAAAAATTTTGAAAACGACGCTTAACAC10.22988505747126436No Hit
GTTTTATTTGTTAATTCACAAATAAAACTATTCGAAATCCTGAAGGAATT10.22988505747126436No Hit
AAAAGATGCATCTTGAAGAAAAACTACAAGAAGTCGTTTATTCTTTCTCA10.22988505747126436No Hit
TCTTCATCGTCAAATCTCACAGGTCCGTGTTCTTCGTCATCATCAGATAC10.22988505747126436No Hit
AGATCTCGTACATGAAACATATTTAAACAGCATTTCACTTAATTGGCAAA10.22988505747126436No Hit
CTTCACACTTCCTTCTCTTCGAACTACTTAATTATATTTCCTCGCCCAAA10.22988505747126436No Hit
GATACCGTGAAGAGGACACGCAGTTGATAATCTTGTACTTTTTAACTATA10.22988505747126436No Hit
TTTTAAGCTCATGTTTAACAATAACTCTCACCAGCTTAGAATTTTAAATG10.22988505747126436No Hit
CACAGATAAAGTCTCCTCCCTCTCTTTTACCGCTCGAGAAACTTCTAACG10.22988505747126436No Hit
GTAAGCCATGGTTGGCTTGTAATTATCCGACTTGCACACAGTAACTTAAT10.22988505747126436No Hit
CCCCCCGCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC10.22988505747126436No Hit
NCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC10.22988505747126436No Hit
TCCCCCCCCCCCCCCCCCCCCCCACACCCCCCCCAACCCCCCCCCCCCCC10.22988505747126436No Hit
CACAGAACTGCGTACGATTTTCAACATCTCATCTCTGTTAGTTACATCAA10.22988505747126436No Hit
GTTTCACATGGATACATCCTTCGTATCTGCACCAATCACTCTTTGTTACA10.22988505747126436No Hit
TGCACATACATATATTACAACTGTTGTATATTAGAAACAATGTATATTCA10.22988505747126436No Hit
AACAGGGGCCACAATACAATATGTGCAAGAAACAAAATTTGAAAACAAAA10.22988505747126436No Hit
TTTGTTGAACACGATTTAAACTTTTGATTATGTTAAAATGATTATATAAT10.22988505747126436No Hit
TCCATCGTCACCTCCAACTGGTCGTGGCACAGCTGCCTCCCGTTCAGCCA10.22988505747126436No Hit
AGACTCTCAAATACAACAGCAGAACGAGACATATGCCATTGTTTACAGTC10.22988505747126436No Hit
CATTACACTTCCTTCTCTTCGAACTACTTAATTATATTTCCTCGCCCAAA10.22988505747126436No Hit
ACCCCCCCCCCCCCCACCCCCCCCCCCCCCGCACCCCCCCCCCCACCCAC10.22988505747126436No Hit
GGTAAAAGGCTCTAACCATATGTTGTATATTCGTGGTAATACAGGTATAT10.22988505747126436No Hit
TTCCAAAAGGAAAATATACAGACCTTTTGGATCCCCTAGGGTCCAGGGGT10.22988505747126436No Hit
CTTTATTTAGAGAGATGTTACTGTAAATGTAAATTACACAAAGTGTCATG10.22988505747126436No Hit
GCTGACTGCATATCCTAAAAACAATACAAATGTGGCTTGAAGTATGTTGG10.22988505747126436No Hit
GAATATTAACCTAAATAACTATGTGACACTAAAGTGAAAATCTTGCACAC10.22988505747126436No Hit
CTACGACCAGCTCACACCCTGTAAGCGTCATTGGCATCGGGTTCTTGAAA10.22988505747126436No Hit
GCCAAGTGTAGACAAAGGTTTTGTTTCAAATGTGGATACGGTCGTTTTAG10.22988505747126436No Hit
GTTTCAAGAACATATTGAAGTCCGTTAACTAATTTAAAGCTCCAAAAGTG10.22988505747126436No Hit
TCTCATTTATTTTTTTCCTCTGTACAGACAATTAACTTATTTAGTTGCTA10.22988505747126436No Hit
CAAATGTTACAACCATACCAGGTTTGATTATTCCGGTTTCCACACGACCC10.22988505747126436No Hit
GGTTACAGTCCAAAGTTCCAAGATGCCGCAGGATGGTTCTGGGCAGGTTT10.22988505747126436No Hit
AATTAGTCATTGGATAATCTTGGTCTACATTGGTGATAAACAGCAAGCTA10.22988505747126436No Hit
ACCCCCCCCCCCCCCACCCCCCCCCCCCCCACACCCCCCCCCCCCCCCCC10.22988505747126436No Hit
ATGACCGGTCATATACGGTATATCCAATAATATTGACTAGAACGTCATTG10.22988505747126436No Hit
TCCATCTTCACCTCCAACTGGTCGTGGCACAGCTGCCTCCCGTTCAGCCA10.22988505747126436No Hit
CCCGACATTACCTTATACAGCATAAAATACTAGATTACAAATTACGATGA10.22988505747126436No Hit
TGTTAATCATATTTTATAATTATTCATATTTTTTTAATATAATTTTTGTT10.22988505747126436No Hit
TTTGGCAGTATCCAAAATTAAATTGGCATTCATTTACACCTATGACAAAT10.22988505747126436No Hit
TCCAGTTGAAAGTAAATGCATCAAACTTTGTATGTTTTTTTTTCTAAATA10.22988505747126436No Hit
CGGTCCGTTACATATCTATGAGATATTGCAGGTAGATCATTATTACAACA10.22988505747126436No Hit
GTAAATACTCCAGTCTTAGGACTATACATGTCGCTCTCGTTGGTTATCAC10.22988505747126436No Hit

[OK]Adapter Content

Adapter graph