FastQCFastQC Report
Thu 8 Sep 2022
Geoduck-juvenile-ambient-exposure-RNA-EPI-123-7_S54_L007_R1_001.fastp-trim.20220908.fq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameGeoduck-juvenile-ambient-exposure-RNA-EPI-123-7_S54_L007_R1_001.fastp-trim.20220908.fq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences60770
Sequences flagged as poor quality0
Sequence length31-151
%GC38

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACAAGTCAACAATCTCGTA1170.19252920849103175TruSeq Adapter, Index 15 (97% over 39bp)
CTAAACTTTACTTTATTACTTTCTTAATAAAAATATATAAGCTCGACAGG640.1053151225933849No Hit
GCCGGATTCGTCATATTCCTGCTTGCTGATCCACATCTGTTGGAAGGTGG630.10366957380286326No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)