FastQCFastQC Report
Thu 8 Sep 2022
Geoduck-juvenile-OA-exposure-RNA-EPI-115-7_S52_L007_R2_001.fastp-trim.20220908.fq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameGeoduck-juvenile-OA-exposure-RNA-EPI-115-7_S52_L007_R2_001.fastp-trim.20220908.fq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences58683
Sequences flagged as poor quality0
Sequence length15-151
%GC37

[WARN]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC2330.3970485489835216No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA1710.2913961453913399No Hit
CTTCTATCGTGTACGATCTTCCTGCGCCCGTGAATATTTCTGCTATGTGA840.14314196615714944No Hit
CGTGTCTTCTATCGTGTACGATCTTCCTGCGCCCGTGAATATTTCTGCTA760.12950939795170663No Hit
GGCGTGTCTTCTATCGTGTACGATCTTCCTGCGCCCGTGAATATTTCTGC700.11928497179762453No Hit
GTACGATCTTCCTGCGCCCGTGAATATTTCTGCTATGTGAAATTTTGGGT630.10735647461786207No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)