FastQCFastQC Report
Thu 8 Sep 2022
Geo_Pool_M_CTTGTA_L006_R2_001.fastp-trim.20220908.fq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameGeo_Pool_M_CTTGTA_L006_R2_001.fastp-trim.20220908.fq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences114683744
Sequences flagged as poor quality0
Sequence length15-101
%GC50

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCCGTTCTTAGTTGGTGGAGCGATTTGTCTGGTTAATTCCGATAACGAAC2871100.25034934332105513No Hit
CACGCTTTCACGGTCTGTATTCGTACTGAAAATCAAAATCAAGTGAGCTT2572780.22433693828481918No Hit
CTAACATGTGCGCGAGTCATGGGGTCTTACGAAACCCAAAGGCGCAATGA2399020.20918570638921588No Hit
CTCCTATCTCTTAGGGCCGACTGACCCATGTTCAACTGCTGTTCACATGG2356770.20550166203154302No Hit
AAAGAAACTAACAAGGATTCCCCTAGTAACGGCGAGTGAAGCGGGAAGAG2152940.18772843690907057No Hit
CCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCA1902960.16593110179590928No Hit
GCGATTTGTCTGGTTAATTCCGATAACGAACGAGACTCTAGCCTGCTAAA1763070.15373320912857535No Hit
GGACACTGCAAGGATTGACAGATTGAGAGCTCTTTCTTGATTCGGTGGGT1561060.13611868130151034No Hit
GTCGGATTCCCCTGGTCCGTACCAGTTCTAAGTTGACTGTTAGTCGCCGG1555620.13564433334161116No Hit
GGCCGTTCTTAGTTGGTGGAGCGATTTGTCTGGTTAATTCCGATAACGAA1543970.13462849625837117No Hit
CCAGAATCGAGGAGCTTGCGCCCCGCTCTCCGCTTAACTGAATAAGTAAA1536320.13396144443976296No Hit
CAAGGATTGACAGATTGAGAGCTCTTTCTTGATTCGGTGGGTGGTGGTGC1510050.13167079721429392No Hit
GCCAGTAGTCATATGCTTGTCTCAAAGATTAAGCCATGCATGTCTAAGTA1492690.13015706916579214No Hit
CAGAAATCACATTGCGTCAACACCAGGTGACGGCCATCGCAATGCTTTGT1395110.12164845263510059No Hit
GCTCAATCTCGTGTGGCTAAACGCCACTTGTCCCTCTAAGAAGTTGGCGA1334140.1163320932389511No Hit
CGAGACTACCCGCTGAATTTAAGCATATCAATAAGCGGAGGAAAAGAAAC1314630.11463089311070974No Hit
CGCGTGTGCGGCCCCGAACATCTAAGGGCATCACAGACCTGTTATTGCTC1304890.11378160099133143No Hit
CGCAAGTCGAAATTGAAATACCACTACTTTTATCGTTTCTTTACTTATTC1277800.1114194527866129No Hit
CGAAAGGGAATCGGGTTAATATTCCCGAACCTGGACACGGAGATCGACTC1244680.108531510795462No Hit
CGAAGCGGGACTGGTACGGGCACGGGTTGGGCGAGGCCTCACGGTCGAGC1226510.10694715373087227No Hit
CGGGGAGGTAGTGACGAAAAATAACAATACGGGACTCTTTCGAGGCCCCG1220560.10642833564973254No Hit
GCAGAATTCACCAAGCGTTGGATTGTTCACCCACTAATAGGGAACGTGAG1197010.1043748624042131No Hit
GGAGGACCGACCGATTCGCCACTGACCCTAGGCGTTCCCAGGCGTACGAG1171570.10215658812115518No Hit
GCAGAAATCACATTGCGTCAACACCAGGTGACGGCCATCGCAATGCTTTG1171110.1021164778157225No Hit
GTCGGAACCCGCTAAGGAGTGTGTAACAACTCACCTGCCGAATCAACTAG1164790.10156539709760436No Hit
GTCAACACCAGGTGACGGCCATCGCAATGCTTTGTTTTAATTAGACAGTC1155180.10072744049932655No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)